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Transfer RNA Biogenesis - Thermococcus paralvinellae
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
D TES1_0200 Ribonuclease P component 1 K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5]
D TES1_0253 Ribonuclease P component 2 K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
D TES1_0245 Ribonuclease P component 3 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
D TES1_1167 Ribonuclease P component 4 K03540 RPR2; ribonuclease P protein subunit RPR2 [EC:3.1.26.5]
B 3'processing and CCA adding factors
C 3'processing factors
D TES1_0125 Ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
C CCA adding factors
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
D TES1_0931 RNA terminal phosphate cyclase K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D TES1_0930 Hypothetical protein K24956 ZBTB8OS; protein archease
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
D TES1_0925 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D TES1_0301 Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D TES1_0827 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D TES1_0040 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D TES1_0241 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D TES1_0818 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D TES1_0887 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D TES1_0763 aspartyl-tRNA synthetase K22503 DARS1; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D TES1_1717 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D TES1_0369 alanyl-tRNA synthetase-like protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D TES1_1069 alanyl-tRNA synthetase domain-containing protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D TES1_1695 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D TES1_0160 Aspartyl/asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D TES1_1251 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D TES1_0372 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D TES1_0907 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D TES1_1166 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D TES1_0997 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D TES1_0837 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D TES1_1721 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D TES1_0469 phenylalanyl-tRNA synthetase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D TES1_0470 Phenylalanyl-tRNA synthetase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D TES1_1248 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D TES1_1847 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
D TES1_0279 Hypothetical protein K09716 dtdA; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
C AARS associated factors
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
D TES1_1504 2-methylthioadenine synthetase K15865 CDKAL1; threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:2.8.4.5]
C Methyltransferases
D TES1_0378 tRNA N2,N2-dimethyl(Guanine26-N2)-methyltransferase K00555 TRMT1; tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase [EC:2.1.1.215 2.1.1.216]
D TES1_1795 nol1-nop2-sun family nucleolar protein K21971 NSUN6; methyltransferase NSUN6 [EC:2.1.1.-]
D TES1_0562 methyltransferase-like protein K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D TES1_0653 tRNA (Guanine37-N1) -methyltransferase K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D TES1_1518 putative tRNA methyltransferase K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D TES1_1969 tRNA-modifying protein K15449 TYW1; tRNA wybutosine-synthesizing protein 1 [EC:4.1.3.44]
D TES1_0720 Hypothetical protein K07055 TRM12; tRNA wybutosine-synthesizing protein 2 [EC:2.5.1.114]
D TES1_2000 Hypothetical protein K15450 TYW3; tRNA wybutosine-synthesizing protein 3 [EC:2.1.1.282]
D TES1_1580 Hypothetical protein K15450 TYW3; tRNA wybutosine-synthesizing protein 3 [EC:2.1.1.282]
C Psudouridine synthases
D TES1_0472 putative pseudouridylate synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D TES1_0222 H/ACA RNA-protein complex component Cbf5p K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D TES1_0766 tRNA pseudouridine synthase K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D TES1_0459 putative pseudouridylate synthase K07583 PUS10; tRNA pseudouridine synthase 10 [EC:5.4.99.25]
C Thiolation factors
D TES1_0854 putative cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
D TES1_1791 putative DNA-binding/iron metalloprotein/AP endonuclease K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234]
C Elongator complex
D TES1_1714 Histone acetyltransferase K07739 ELP3; elongator complex protein 3 (tRNA carboxymethyluridine synthase) [EC:2.3.1.311]
C Elongator related proteins
C Other tRNA modification factors
D TES1_1132 putative translation factor, sua5 family K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D TES1_0905 Hypothetical protein K06963 TAN1; tRNA acetyltransferase TAN1
D TES1_1530 RNA-binding protein, containing THUMP domain K06963 TAN1; tRNA acetyltransferase TAN1
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
C Other tRNA degradation factors
#
AProkaryotic type
B 5'processing factors
C Ribonucrease P
D TES1_0273 Hypothetical protein K09006 K09006; RNA-free ribonuclease P [EC:3.1.26.5]
B 3'processing and CCA adding factors
C 3'processing factors
D TES1_0125 Ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
C CCA adding factors
D TES1_0023 Archaeal tRNA nucleotidyltransferase K07558 K07558; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72]
B tRNA spricing factors
C tRNA splicing endonucleases
D TES1_0569 tRNA-splicing endonuclease subunit alpha K01170 endA; tRNA-intron endonuclease, archaea type [EC:4.6.1.16]
C tRNA splicing ligases
D TES1_0931 RNA terminal phosphate cyclase K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
C Other tRNA splicing factors
D TES1_0021 Putative 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D TES1_1047 RNA 2'-phosphotransferase-like protein K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-]
B tRNA transport factors
C tRNA export factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D TES1_0241 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D TES1_1027 lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D TES1_0827 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D TES1_1248 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D TES1_1847 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D TES1_0907 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D TES1_0040 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D TES1_1717 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D TES1_0369 alanyl-tRNA synthetase-like protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D TES1_1069 alanyl-tRNA synthetase domain-containing protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D TES1_1695 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D TES1_0837 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D TES1_0818 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D TES1_1166 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D TES1_0997 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D TES1_0971 putative cysteinyl-tRNA synthetase K01884 cysS1; cysteinyl-tRNA synthetase, unknown class [EC:6.1.1.16]
D TES1_0301 Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D TES1_0887 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D TES1_0469 phenylalanyl-tRNA synthetase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D TES1_0470 Phenylalanyl-tRNA synthetase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D TES1_1721 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D TES1_0160 Aspartyl/asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D TES1_1251 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
C Trans-editing factors
D TES1_0279 Hypothetical protein K09716 dtdA; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferases
C Methyltransferases
D TES1_1564 putative tRNA/rRNA methyltransferase K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
D TES1_1908 tRNA (uracil(54)-C5)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D TES1_0609 Hypothetical protein K16317 trmY; tRNA (pseudouridine54-N1)-methyltransferase [EC:2.1.1.257]
D TES1_0150 Hypothetical protein K22901 trm4; tRNA (cytosine40_48-C5)-methyltransferase [EC:2.1.1.-]
D TES1_0839 tRNA m(1)G methyltransferase K15566 trm10; tRNA (adenine9-N1/guanine9-N1)-methyltransferase [EC:2.1.1.218 2.1.1.221]
D TES1_1851 N6-adenine-specific RNA methylase K16318 trm14; tRNA (guanine6-N2)-methyltransferase [EC:2.1.1.256]
D TES1_0358 tRNA-(G10-N2) methyltransferase K07446 trm-G10; tRNA (guanine10-N2)-dimethyltransferase [EC:2.1.1.213]
D TES1_1266 tRNA 2'-O-methylase K07254 atrm56; tRNA (cytidine56-2'-O)-methyltransferase [EC:2.1.1.206]
C Psudouridine synthases
D TES1_0472 putative pseudouridylate synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D TES1_0222 H/ACA RNA-protein complex component Cbf5p K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D TES1_0766 tRNA pseudouridine synthase K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
C Thiolation factors
D TES1_1901 ATPase, PP-loop superfamily protein K21947 ttuA; tRNA-5-methyluridine54 2-sulfurtransferase [EC:2.8.1.15]
D TES1_0854 putative cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
D TES1_1791 putative DNA-binding/iron metalloprotein/AP endonuclease K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234]
D TES1_1312 Hypothetical protein K09119 cgi121; KEOPS complex subunit Cgi121
D TES1_0262 Hypothetical protein K09741 pcc1; KEOPS complex subunit Pcc1
C Other tRNA modification factors
D TES1_1528 hypothetical protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D TES1_1085 putative 6-pyruvoyl-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D TES1_0619 hypothetical protein containing SAM domain K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D TES1_0575 archaeosine tRNA-ribosyltransferase K18779 tgtA; 7-cyano-7-deazaguanine tRNA-ribosyltransferase [EC:2.4.2.48]
D TES1_1409 thiamine biosynthesis ThiI-like protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D TES1_1222 thiamine biosynthesis ThiI-like protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D TES1_1223 thiamine biosynthesis ThiI-like protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D TES1_0950 OB-fold nucleic acid binding domain protein K06932 tiaS; tRNA(Ile2)-agmatinylcytidine synthase [EC:6.3.4.22]
D TES1_1742 P-loop ATPase K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
D TES1_1132 putative translation factor, sua5 family K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
B tRNA degradation factors
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024