+D GENES KO #

  KEGG Orthology (KO) - Thiomicrorhabdus immobilis

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:tib00010] D THMIRHAM_05070 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D THMIRHAM_14760 pfp; pyrophosphate--fructose 6-phosphate 1-phosphotransferase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D THMIRHAM_07260 fbp; fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D THMIRHAM_02900 fba; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D THMIRHAM_15040 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D THMIRHAM_02870 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D THMIRHAM_02880 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D THMIRHAM_20170 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D THMIRHAM_12010 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D THMIRHAM_02890 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D THMIRHAM_16720 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D THMIRHAM_13170 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D THMIRHAM_13160 hypothetical protein K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D THMIRHAM_07290 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D THMIRHAM_13150 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D THMIRHAM_10640 acsA; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D THMIRHAM_20460 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D THMIRHAM_05050 xanA; phosphohexose mutases K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D THMIRHAM_21970 D-hexose-6-phosphate mutarotase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15] C 00020 Citrate cycle (TCA cycle) [PATH:tib00020] D THMIRHAM_04120 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D THMIRHAM_10820 acnB; aconitate hydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D THMIRHAM_10270 icd; isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D THMIRHAM_07290 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D THMIRHAM_13150 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D THMIRHAM_13340 sucD; succinate--CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D THMIRHAM_13350 sucC; succinate--CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D THMIRHAM_10550 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D THMIRHAM_10540 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D THMIRHAM_09220 fumC-2; fumarate hydratase class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D THMIRHAM_19380 mqo; putative malate:quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4] D THMIRHAM_13170 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D THMIRHAM_13160 hypothetical protein K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway [PATH:tib00030] D THMIRHAM_05070 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D THMIRHAM_21780 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D THMIRHAM_21790 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D THMIRHAM_03170 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D THMIRHAM_02860 tkt1; transketolase 1 K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D THMIRHAM_14690 rpiA; ribose-5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D THMIRHAM_20460 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D THMIRHAM_05050 xanA; phosphohexose mutases K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D THMIRHAM_04430 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D THMIRHAM_02900 fba; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D THMIRHAM_07260 fbp; fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D THMIRHAM_14760 pfp; pyrophosphate--fructose 6-phosphate 1-phosphotransferase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] C 00040 Pentose and glucuronate interconversions [PATH:tib00040] D THMIRHAM_05060 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D THMIRHAM_05080 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D THMIRHAM_03170 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] C 00051 Fructose and mannose metabolism [PATH:tib00051] D THMIRHAM_09150 fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D THMIRHAM_05050 xanA; phosphohexose mutases K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D THMIRHAM_21170 xanB; xanthan biosynthesis protein XanB K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D THMIRHAM_14760 pfp; pyrophosphate--fructose 6-phosphate 1-phosphotransferase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D THMIRHAM_07260 fbp; fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D THMIRHAM_02900 fba; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D THMIRHAM_15040 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 00052 Galactose metabolism [PATH:tib00052] D THMIRHAM_05080 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D THMIRHAM_20460 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D THMIRHAM_05050 xanA; phosphohexose mutases K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D THMIRHAM_14760 pfp; pyrophosphate--fructose 6-phosphate 1-phosphotransferase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] C 00053 Ascorbate and aldarate metabolism D THMIRHAM_05060 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] C 00500 Starch and sucrose metabolism [PATH:tib00500] D THMIRHAM_21760 sps; sucrose-phosphate synthase K00696 E2.4.1.14; sucrose-phosphate synthase [EC:2.4.1.14] D THMIRHAM_21740 alpha-amylase K05341 E2.4.1.4; amylosucrase [EC:2.4.1.4] D THMIRHAM_05080 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D THMIRHAM_04680 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D THMIRHAM_04720 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21] D THMIRHAM_04710 glgB; 1,4-alpha-glucan branching enzyme GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D THMIRHAM_04730 glgP; alpha-1,4 glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D THMIRHAM_04700 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25] D THMIRHAM_20460 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D THMIRHAM_05050 xanA; phosphohexose mutases K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D THMIRHAM_05070 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D THMIRHAM_09150 fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:tib00520] D THMIRHAM_12400 nagZ; beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D THMIRHAM_09150 fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D THMIRHAM_04750 glmS; glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D THMIRHAM_15050 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D THMIRHAM_22180 glmU; bifunctional protein GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D THMIRHAM_04130 anmK; anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] D THMIRHAM_11280 gph2; phosphoglycolate phosphatase K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105] D THMIRHAM_06400 aminoglycoside phosphotransferase K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221] D THMIRHAM_06410 mannose-1-phosphate guanylyltransferase K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99] D THMIRHAM_05880 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D THMIRHAM_12380 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D THMIRHAM_04760 pseB; UDP-N-acetylglucosamine 4,6-dehydratase (inverting) K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-] D THMIRHAM_04780 rkpN; pseudaminic acid cytidylyltransferase K15899 pseF; pseudaminic acid cytidylyltransferase [EC:2.7.7.81] D THMIRHAM_20460 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D THMIRHAM_05050 xanA; phosphohexose mutases K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D THMIRHAM_05080 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D THMIRHAM_05060 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D THMIRHAM_05070 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D THMIRHAM_21170 xanB; xanthan biosynthesis protein XanB K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D THMIRHAM_04680 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] C 00620 Pyruvate metabolism [PATH:tib00620] D THMIRHAM_10640 acsA; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D THMIRHAM_13170 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D THMIRHAM_13160 hypothetical protein K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D THMIRHAM_07290 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D THMIRHAM_13150 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D THMIRHAM_02890 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D THMIRHAM_12050 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D THMIRHAM_17750 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D THMIRHAM_17760 acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D THMIRHAM_15140 accD; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D THMIRHAM_20340 ldhA; lactate dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28] D THMIRHAM_15380 gloA; lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D THMIRHAM_13580 gloB; hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D THMIRHAM_20310 malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D THMIRHAM_19380 mqo; putative malate:quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4] D THMIRHAM_09220 fumC-2; fumarate hydratase class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D THMIRHAM_07240 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D THMIRHAM_16720 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D THMIRHAM_00420 leuA-2; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D THMIRHAM_16070 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:tib00630] D THMIRHAM_10640 acsA; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D THMIRHAM_04120 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D THMIRHAM_10820 acnB; aconitate hydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D THMIRHAM_00710 glycolate oxidase subunit GlcD K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D THMIRHAM_00700 glcE; glycolate oxidase subunit GlcE K11472 glcE; glycolate dehydrogenase FAD-binding subunit [EC:1.1.99.14] D THMIRHAM_00690 glcF; glycolate oxidase iron-sulfur subunit K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14] D THMIRHAM_03180 gph1; phosphoglycolate phosphatase 1 K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D THMIRHAM_08340 hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D THMIRHAM_02990 cbbL_1; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] D THMIRHAM_03020 cbbM; ribulose bisphosphate carboxylase K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] D THMIRHAM_21650 cbbL_2; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] D THMIRHAM_02980 rbcS_1; ribulose bisphosphate carboxylase small subunit K01602 rbcS; ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] D THMIRHAM_21640 rbcS_2; ribulose bisphosphate carboxylase small subunit K01602 rbcS; ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] D THMIRHAM_00720 agxT; serine--pyruvate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D THMIRHAM_06200 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D THMIRHAM_14060 glyA1; serine hydroxymethyltransferase 1 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D THMIRHAM_08160 gcvP; glycine dehydrogenase (decarboxylating) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D THMIRHAM_08140 gcvT2; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D THMIRHAM_07290 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D THMIRHAM_13150 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D THMIRHAM_08150 gcvH_1; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D THMIRHAM_19220 gcvH_2; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D THMIRHAM_02690 glxK; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D THMIRHAM_01220 purU1; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] C 00640 Propanoate metabolism [PATH:tib00640] D THMIRHAM_10640 acsA; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D THMIRHAM_07290 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D THMIRHAM_13150 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D THMIRHAM_12050 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D THMIRHAM_17750 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D THMIRHAM_17760 acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D THMIRHAM_15140 accD; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D THMIRHAM_13350 sucC; succinate--CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D THMIRHAM_13340 sucD; succinate--CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D THMIRHAM_10820 acnB; aconitate hydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] C 00650 Butanoate metabolism [PATH:tib00650] D THMIRHAM_10550 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D THMIRHAM_10540 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D THMIRHAM_19460 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D THMIRHAM_16930 hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D THMIRHAM_00270 ilvB_1; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D THMIRHAM_15850 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D THMIRHAM_17970 ilvB_2; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D THMIRHAM_15840 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism [PATH:tib00660] D THMIRHAM_00270 ilvB_1; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D THMIRHAM_15850 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D THMIRHAM_17970 ilvB_2; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D THMIRHAM_15840 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D THMIRHAM_13350 sucC; succinate--CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D THMIRHAM_13340 sucD; succinate--CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D THMIRHAM_15240 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D THMIRHAM_15230 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D THMIRHAM_15220 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:tib00562] D THMIRHAM_05980 phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D THMIRHAM_16040 suhB; inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D THMIRHAM_15040 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:tib00190] D THMIRHAM_15020 nuoA; NADH-quinone oxidoreductase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D THMIRHAM_15010 nuoB1; NADH-quinone oxidoreductase subunit B 1 K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D THMIRHAM_15000 nuoC; NADH-quinone oxidoreductase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2] D THMIRHAM_14990 nuoD; NADH-quinone oxidoreductase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2] D THMIRHAM_14980 NADH dehydrogenase subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D THMIRHAM_14970 nuoF; NADH-quinone oxidoreductase subunit F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D THMIRHAM_14960 nuoG; NADH-quinone oxidoreductase K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D THMIRHAM_14950 nuoH; NADH-quinone oxidoreductase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D THMIRHAM_14940 nuoI; NADH-quinone oxidoreductase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D THMIRHAM_14930 nuoJ; NADH-quinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D THMIRHAM_14920 nuoK; NADH-quinone oxidoreductase subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D THMIRHAM_14910 nuoL; NADH-quinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D THMIRHAM_14900 nuoM; NADH-quinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D THMIRHAM_14890 nuoN; NADH-quinone oxidoreductase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D THMIRHAM_10550 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D THMIRHAM_10540 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D THMIRHAM_05920 petA; ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D THMIRHAM_05930 petB; cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D THMIRHAM_05940 petC; cytochrome c K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D THMIRHAM_01970 cytochrome c oxidase, cbb3-type subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D THMIRHAM_01980 ccoO2; cbb3-type cytochrome c oxidase subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D THMIRHAM_02000 fixP; Cbb3-type cytochrome c oxidase subunit FixP K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D THMIRHAM_18750 atpA1; ATP synthase subunit alpha 1 K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D THMIRHAM_22220 atpA; ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D THMIRHAM_18810 atpD; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D THMIRHAM_22200 atpD1; ATP synthase subunit beta 1 K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D THMIRHAM_22210 atpG; ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D THMIRHAM_22230 atpH; ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D THMIRHAM_18800 hypothetical protein K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D THMIRHAM_22190 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D THMIRHAM_18780 atpB_1; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a D THMIRHAM_22260 atpB_2; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a D THMIRHAM_22240 atpF_2; ATP synthase subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b D THMIRHAM_18770 hypothetical protein K02110 ATPF0C; F-type H+-transporting ATPase subunit c D THMIRHAM_22250 hypothetical protein K02110 ATPF0C; F-type H+-transporting ATPase subunit c D THMIRHAM_07250 ppa; inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] D THMIRHAM_19520 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D THMIRHAM_19020 hypothetical protein K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation by Calvin cycle [PATH:tib00710] D THMIRHAM_02990 cbbL_1; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] D THMIRHAM_03020 cbbM; ribulose bisphosphate carboxylase K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] D THMIRHAM_21650 cbbL_2; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] D THMIRHAM_02980 rbcS_1; ribulose bisphosphate carboxylase small subunit K01602 rbcS; ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] D THMIRHAM_21640 rbcS_2; ribulose bisphosphate carboxylase small subunit K01602 rbcS; ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] D THMIRHAM_02880 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D THMIRHAM_02870 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D THMIRHAM_02900 fba; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D THMIRHAM_07260 fbp; fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D THMIRHAM_02860 tkt1; transketolase 1 K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D THMIRHAM_14690 rpiA; ribose-5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D THMIRHAM_00070 prk; phosphoribulokinase K00855 PRK; phosphoribulokinase [EC:2.7.1.19] D THMIRHAM_15040 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D THMIRHAM_03170 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D THMIRHAM_07240 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D THMIRHAM_20310 malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] C 00720 Other carbon fixation pathways [PATH:tib00720] D THMIRHAM_16720 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D THMIRHAM_07240 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D THMIRHAM_09220 fumC-2; fumarate hydratase class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D THMIRHAM_10550 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D THMIRHAM_10540 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D THMIRHAM_13340 sucD; succinate--CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D THMIRHAM_13350 sucC; succinate--CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D THMIRHAM_10270 icd; isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D THMIRHAM_10820 acnB; aconitate hydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D THMIRHAM_12050 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D THMIRHAM_17750 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D THMIRHAM_17760 acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D THMIRHAM_15140 accD; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D THMIRHAM_00680 fhs; formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D THMIRHAM_08510 folD; bifunctional protein FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D THMIRHAM_18880 metF; methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D THMIRHAM_10640 acsA; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] C 00680 Methane metabolism [PATH:tib00680] D THMIRHAM_14060 glyA1; serine hydroxymethyltransferase 1 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D THMIRHAM_00720 agxT; serine--pyruvate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D THMIRHAM_12010 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D THMIRHAM_07240 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D THMIRHAM_02900 fba; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D THMIRHAM_07260 fbp; fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D THMIRHAM_14760 pfp; pyrophosphate--fructose 6-phosphate 1-phosphotransferase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D THMIRHAM_10640 acsA; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D THMIRHAM_16720 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D THMIRHAM_20170 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D THMIRHAM_11310 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D THMIRHAM_06770 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 00910 Nitrogen metabolism [PATH:tib00910] D THMIRHAM_08660 glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D THMIRHAM_06200 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D THMIRHAM_20200 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D THMIRHAM_20210 gltD; glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D THMIRHAM_01590 cynS; cyanate hydratase K01725 cynS; cyanate lyase [EC:4.2.1.104] D THMIRHAM_03070 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D THMIRHAM_19950 carbonic anhydrase K01674 cah; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:tib00920] D THMIRHAM_05440 cysN; sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D THMIRHAM_05420 cysD; sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D THMIRHAM_05460 cysC; adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D THMIRHAM_05470 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D THMIRHAM_18340 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D THMIRHAM_16150 soxA; SoxAX cytochrome complex subunit A K17222 soxA; L-cysteine S-thiosulfotransferase [EC:2.8.5.2] D THMIRHAM_16120 hypothetical protein K17223 soxX; L-cysteine S-thiosulfotransferase [EC:2.8.5.2] D THMIRHAM_20260 soxY_2; thiosulfate oxidation carrier protein SoxY K17226 soxY; sulfur-oxidizing protein SoxY D THMIRHAM_16130 soxY_1; thiosulfate oxidation carrier protein SoxY K17226 soxY; sulfur-oxidizing protein SoxY D THMIRHAM_16140 thiosulfate oxidation carrier complex protein SoxZ K17227 soxZ; sulfur-oxidizing protein SoxZ D THMIRHAM_20250 thiosulfate oxidation carrier complex protein SoxZ K17227 soxZ; sulfur-oxidizing protein SoxZ D THMIRHAM_14130 soxB; thiosulfohydrolase SoxB K17224 soxB; S-sulfosulfanyl-L-cysteine sulfohydrolase [EC:3.1.6.20] D THMIRHAM_01490 soxC; sulfite dehydrogenase K17225 soxC; sulfane dehydrogenase subunit SoxC D THMIRHAM_01500 hypothetical protein K22622 soxD; S-disulfanyl-L-cysteine oxidoreductase SoxD [EC:1.8.2.6] D THMIRHAM_11030 sqr; pyridine nucleotide-disulfide oxidoreductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4] D THMIRHAM_09610 hypothetical protein K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4] D THMIRHAM_15750 fccB-2_1; cytochrome c K17229 fccB; sulfide dehydrogenase [flavocytochrome c] flavoprotein chain [EC:1.8.2.3] D THMIRHAM_19730 fccB-2_2; cytochrome c K17229 fccB; sulfide dehydrogenase [flavocytochrome c] flavoprotein chain [EC:1.8.2.3] D THMIRHAM_19770 fccB-2_3; cytochrome c K17229 fccB; sulfide dehydrogenase [flavocytochrome c] flavoprotein chain [EC:1.8.2.3] D THMIRHAM_15740 hypothetical protein K17230 fccA; cytochrome subunit of sulfide dehydrogenase D THMIRHAM_13510 Zn-dependent hydrolase K17725 ETHE1; sulfur dioxygenase [EC:1.13.11.18] D THMIRHAM_06090 thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D THMIRHAM_16020 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D THMIRHAM_19080 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D THMIRHAM_15100 metZ; O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:tib00061] D THMIRHAM_12050 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D THMIRHAM_17750 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D THMIRHAM_17760 acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D THMIRHAM_15140 accD; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D THMIRHAM_08740 acpC; acyl carrier protein K02078 acpP; acyl carrier protein D THMIRHAM_08420 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D THMIRHAM_08400 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D THMIRHAM_08390 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D THMIRHAM_08860 fabF_2; beta-ketoacyl-[acyl-carrier-protein] synthase II K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D THMIRHAM_20070 fabB; beta-ketoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D THMIRHAM_08430 fabF_1; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D THMIRHAM_08830 fabG_2; 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D THMIRHAM_08410 fabG_1; beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D THMIRHAM_20080 fabA; 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D THMIRHAM_12180 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D THMIRHAM_11140 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:tib00071] D THMIRHAM_00600 hypothetical protein K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20] D THMIRHAM_01620 norW; nitric oxide reductase FlRd-NAD(+) reductase K05297 rubB; rubredoxin---NAD+ reductase [EC:1.18.1.1] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:tib00561] D THMIRHAM_02690 glxK; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D THMIRHAM_08380 plsX; phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D THMIRHAM_18670 plsY; glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D THMIRHAM_04190 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D THMIRHAM_17360 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] C 00564 Glycerophospholipid metabolism [PATH:tib00564] D THMIRHAM_20130 gpsA; glycerol-3-phosphate dehydrogenase [NAD(P)+] K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D THMIRHAM_18670 plsY; glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D THMIRHAM_04190 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D THMIRHAM_17360 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D THMIRHAM_00600 hypothetical protein K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20] D THMIRHAM_12230 cdsA; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D THMIRHAM_16080 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D THMIRHAM_13710 psd; phosphatidylserine decarboxylase proenzyme K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D THMIRHAM_10860 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D THMIRHAM_13680 pgpA; phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27] D THMIRHAM_02680 S-adenosylmethionine--diacylglycerol 3-amino-3-carboxypropyl transferase K13622 btaA; S-adenosylmethionine-diacylglycerol 3-amino-3-carboxypropyl transferase C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids D THMIRHAM_15520 tesA; arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:tib00230] D THMIRHAM_11470 nudF; ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D THMIRHAM_18350 nudE; ADP compounds hydrolase NudE K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-] D THMIRHAM_20460 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D THMIRHAM_05050 xanA; phosphohexose mutases K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D THMIRHAM_04430 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D THMIRHAM_15110 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D THMIRHAM_17820 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D THMIRHAM_14580 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D THMIRHAM_21880 purT; phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21] D THMIRHAM_14140 purL; phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] D THMIRHAM_14570 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D THMIRHAM_18820 purK; N5-carboxyaminoimidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D THMIRHAM_18830 purE; N5-carboxyaminoimidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D THMIRHAM_03150 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D THMIRHAM_10800 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D THMIRHAM_17800 purH; bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D THMIRHAM_01100 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D THMIRHAM_11980 surE; 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D THMIRHAM_18360 haloacid dehalogenase K20881 yrfG; GMP/IMP 5'-nucleotidase [EC:3.1.3.-] D THMIRHAM_15370 UPF0345 protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2] D THMIRHAM_13300 laccase domain protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D THMIRHAM_06800 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D THMIRHAM_15990 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D THMIRHAM_20790 rdgB; non-canonical purine NTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D THMIRHAM_21520 non-canonical purine NTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D THMIRHAM_06810 guaA; GMP synthase [glutamine-hydrolyzing] K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D THMIRHAM_22000 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D THMIRHAM_18320 nrdA; ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D THMIRHAM_18420 nrdB; ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D THMIRHAM_14300 deoxyguanosinetriphosphate triphosphohydrolase-like protein K01129 dgt; dGTPase [EC:3.1.5.1] D THMIRHAM_22060 spoT; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D THMIRHAM_19530 ppx; exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D THMIRHAM_11610 relA; GTP pyrophosphokinase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5] D THMIRHAM_12480 CYTH domain-containing protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D THMIRHAM_10200 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D THMIRHAM_19430 LOG family protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-] D THMIRHAM_20840 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D THMIRHAM_06350 apaH; bis(5'-nucleosyl)-tetraphosphatase, symmetrical K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41] D THMIRHAM_05460 cysC; adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D THMIRHAM_05440 cysN; sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D THMIRHAM_05420 cysD; sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D THMIRHAM_21290 gamma-glutamyltransferase K22602 hpxW; oxamate amidohydrolase [EC:3.5.1.126] C 00240 Pyrimidine metabolism [PATH:tib00240] D THMIRHAM_09090 carB; carbamoyl-phosphate synthase (glutamine-hydrolyzing) K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D THMIRHAM_09080 carA; carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D THMIRHAM_18980 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D THMIRHAM_19480 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D THMIRHAM_18990 pyrC; dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D THMIRHAM_20110 pyrD; dihydroorotate dehydrogenase K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14] D THMIRHAM_19570 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D THMIRHAM_11400 pyrF; orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D THMIRHAM_12260 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D THMIRHAM_15990 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D THMIRHAM_17240 Maf-like protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D THMIRHAM_12030 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D THMIRHAM_11360 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D THMIRHAM_11980 surE; 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D THMIRHAM_15370 UPF0345 protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2] D THMIRHAM_18970 pyrR; bifunctional protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D THMIRHAM_19430 LOG family protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-] D THMIRHAM_14600 dcd; dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D THMIRHAM_18320 nrdA; ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D THMIRHAM_18420 nrdB; ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D THMIRHAM_08470 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D THMIRHAM_19650 dut_2; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D THMIRHAM_16490 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D THMIRHAM_14380 NAD(P)-dependent oxidoreductase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:tib00250] D THMIRHAM_04930 aatA; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D THMIRHAM_09370 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D THMIRHAM_11750 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D THMIRHAM_16230 asparagine synthetase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D THMIRHAM_00720 agxT; serine--pyruvate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D THMIRHAM_13690 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D THMIRHAM_01130 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D THMIRHAM_10200 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D THMIRHAM_10800 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D THMIRHAM_18980 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D THMIRHAM_19460 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D THMIRHAM_20200 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D THMIRHAM_20210 gltD; glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D THMIRHAM_08660 glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D THMIRHAM_06200 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D THMIRHAM_09090 carB; carbamoyl-phosphate synthase (glutamine-hydrolyzing) K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D THMIRHAM_09080 carA; carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D THMIRHAM_04750 glmS; glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D THMIRHAM_15110 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:tib00260] D THMIRHAM_02750 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D THMIRHAM_07080 lysC; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D THMIRHAM_15190 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D THMIRHAM_11920 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D THMIRHAM_00170 thrB; homoserine kinase K02204 thrB2; homoserine kinase type II [EC:2.7.1.39] D THMIRHAM_11900 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D THMIRHAM_14060 glyA1; serine hydroxymethyltransferase 1 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D THMIRHAM_00720 agxT; serine--pyruvate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D THMIRHAM_02690 glxK; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D THMIRHAM_20170 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D THMIRHAM_11310 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D THMIRHAM_06770 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D THMIRHAM_14380 NAD(P)-dependent oxidoreductase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-] D THMIRHAM_08160 gcvP; glycine dehydrogenase (decarboxylating) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D THMIRHAM_08140 gcvT2; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D THMIRHAM_07290 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D THMIRHAM_13150 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D THMIRHAM_08150 gcvH_1; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D THMIRHAM_19220 gcvH_2; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D THMIRHAM_16080 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D THMIRHAM_19680 sdaA; L-serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D THMIRHAM_14640 ilvA1; L-threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D THMIRHAM_15150 trpA; tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D THMIRHAM_06710 trpB_1; tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D THMIRHAM_15160 trpB_2; tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D THMIRHAM_02730 ectB; diaminobutyrate--2-oxoglutarate transaminase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76] D THMIRHAM_02720 ectA; L-2,4-diaminobutyric acid acetyltransferase K06718 ectA; L-2,4-diaminobutyric acid acetyltransferase [EC:2.3.1.178] D THMIRHAM_02740 ectC; L-ectoine synthase K06720 ectC; L-ectoine synthase [EC:4.2.1.108] C 00270 Cysteine and methionine metabolism [PATH:tib00270] D THMIRHAM_16020 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D THMIRHAM_21950 patB; cystathionine beta-lyase PatB K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D THMIRHAM_02200 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D THMIRHAM_18870 metK; S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D THMIRHAM_03270 speH; S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D THMIRHAM_03280 speE; polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16] D THMIRHAM_21850 mtnN; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D THMIRHAM_13300 laccase domain protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D THMIRHAM_21840 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D THMIRHAM_02750 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D THMIRHAM_07080 lysC; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D THMIRHAM_15190 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D THMIRHAM_11920 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D THMIRHAM_19080 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D THMIRHAM_15100 metZ; O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-] D THMIRHAM_17420 ilvE; branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D THMIRHAM_18910 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D THMIRHAM_14610 gshB_1; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3] D THMIRHAM_18920 gshB_2; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3] D THMIRHAM_04930 aatA; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D THMIRHAM_06090 thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D THMIRHAM_09620 acdS; 1-aminocyclopropane-1-carboxylate deaminase K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15] D THMIRHAM_19680 sdaA; L-serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D THMIRHAM_12490 cysM; cysteine synthase K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144] D THMIRHAM_11310 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:tib00280] D THMIRHAM_17420 ilvE; branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D THMIRHAM_07290 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D THMIRHAM_13150 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D THMIRHAM_16930 hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:tib00290] D THMIRHAM_14640 ilvA1; L-threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D THMIRHAM_15240 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D THMIRHAM_15230 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D THMIRHAM_15220 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D THMIRHAM_00270 ilvB_1; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D THMIRHAM_15850 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D THMIRHAM_17970 ilvB_2; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D THMIRHAM_15840 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D THMIRHAM_15830 ilvC; ketol-acid reductoisomerase (NADP(+)) K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D THMIRHAM_16190 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D THMIRHAM_17420 ilvE; branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D THMIRHAM_00420 leuA-2; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D THMIRHAM_16070 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:tib00300] D THMIRHAM_11920 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D THMIRHAM_02750 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D THMIRHAM_07080 lysC; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D THMIRHAM_15190 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D THMIRHAM_14160 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D THMIRHAM_09030 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D THMIRHAM_12320 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D THMIRHAM_17440 argD; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D THMIRHAM_12340 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D THMIRHAM_04540 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D THMIRHAM_19190 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] C 00310 Lysine degradation [PATH:tib00310] D THMIRHAM_07290 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D THMIRHAM_13150 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D THMIRHAM_19460 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D THMIRHAM_06550 cytochrome c550 K00824 dat; D-alanine transaminase [EC:2.6.1.21] C 00220 Arginine biosynthesis [PATH:tib00220] D THMIRHAM_17450 argF; ornithine carbamoyltransferase, catabolic K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D THMIRHAM_13690 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D THMIRHAM_01130 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D THMIRHAM_08580 urea carboxylase K01941 uca; urea carboxylase [EC:6.3.4.6] D THMIRHAM_08570 allophanate hydrolase K01457 atzF; allophanate hydrolase [EC:3.5.1.54] D THMIRHAM_06200 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D THMIRHAM_09090 carB; carbamoyl-phosphate synthase (glutamine-hydrolyzing) K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D THMIRHAM_09080 carA; carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D THMIRHAM_08660 glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D THMIRHAM_04930 aatA; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D THMIRHAM_16200 argA; amino-acid acetyltransferase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1] D THMIRHAM_16300 argJ; arginine biosynthesis bifunctional protein ArgJ K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] D THMIRHAM_19620 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D THMIRHAM_04100 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D THMIRHAM_17440 argD; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] C 00330 Arginine and proline metabolism [PATH:tib00330] D THMIRHAM_03290 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D THMIRHAM_03280 speE; polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16] D THMIRHAM_03270 speH; S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D THMIRHAM_19060 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D THMIRHAM_04030 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D THMIRHAM_18040 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D THMIRHAM_02110 proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D THMIRHAM_04930 aatA; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D THMIRHAM_06550 cytochrome c550 K00824 dat; D-alanine transaminase [EC:2.6.1.21] C 00340 Histidine metabolism [PATH:tib00340] D THMIRHAM_05890 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D THMIRHAM_10190 hisZ; ATP phosphoribosyltransferase regulatory subunit K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit D THMIRHAM_01920 hisE; phosphoribosyl-ATP pyrophosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31] D THMIRHAM_02640 hisI; phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19] D THMIRHAM_01940 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D THMIRHAM_01950 hisH1; imidazole glycerol phosphate synthase subunit HisH 1 K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D THMIRHAM_01930 hisF1; imidazole glycerol phosphate synthase subunit hisF1 K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D THMIRHAM_01960 hisB; imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D THMIRHAM_11330 hisC2; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D THMIRHAM_16290 hisC1; histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D THMIRHAM_05900 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] C 00350 Tyrosine metabolism [PATH:tib00350] D THMIRHAM_04930 aatA; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D THMIRHAM_11330 hisC2; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D THMIRHAM_16290 hisC1; histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D THMIRHAM_19460 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00360 Phenylalanine metabolism [PATH:tib00360] D THMIRHAM_04930 aatA; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D THMIRHAM_11330 hisC2; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D THMIRHAM_16290 hisC1; histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D THMIRHAM_06550 cytochrome c550 K00824 dat; D-alanine transaminase [EC:2.6.1.21] D THMIRHAM_15810 katG1; catalase-peroxidase 1 K03782 katG; catalase-peroxidase [EC:1.11.1.21] D THMIRHAM_17290 hypothetical protein K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] C 00380 Tryptophan metabolism [PATH:tib00380] D THMIRHAM_07290 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D THMIRHAM_13150 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D THMIRHAM_15810 katG1; catalase-peroxidase 1 K03782 katG; catalase-peroxidase [EC:1.11.1.21] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:tib00400] D THMIRHAM_13980 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D THMIRHAM_21980 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D THMIRHAM_17740 aroQ1; 3-dehydroquinate dehydratase 1 K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D THMIRHAM_01460 aroE; shikimate dehydrogenase (NADP(+)) K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D THMIRHAM_21990 aroK; shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D THMIRHAM_11350 hypothetical protein K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D THMIRHAM_15400 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D THMIRHAM_03200 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D THMIRHAM_03210 glutamine amidotransferase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D THMIRHAM_03220 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D THMIRHAM_15170 trpF; N-(5'-phosphoribosyl)anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D THMIRHAM_03240 trpC; indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D THMIRHAM_15150 trpA; tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D THMIRHAM_06710 trpB_1; tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D THMIRHAM_15160 trpB_2; tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D THMIRHAM_11320 pheA; chorismate mutase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51] D THMIRHAM_04930 aatA; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D THMIRHAM_11330 hisC2; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D THMIRHAM_16290 hisC1; histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:tib00410] D THMIRHAM_07230 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D THMIRHAM_07200 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] C 00430 Taurine and hypotaurine metabolism D THMIRHAM_16850 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] C 00440 Phosphonate and phosphinate metabolism C 00450 Selenocompound metabolism [PATH:tib00450] D THMIRHAM_21950 patB; cystathionine beta-lyase PatB K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D THMIRHAM_02200 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D THMIRHAM_16390 csdB; cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D THMIRHAM_08090 trxB; thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D THMIRHAM_05440 cysN; sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D THMIRHAM_05420 cysD; sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D THMIRHAM_10420 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D THMIRHAM_10090 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:tib00460] D THMIRHAM_16850 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D THMIRHAM_11750 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D THMIRHAM_14060 glyA1; serine hydroxymethyltransferase 1 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:tib00470] D THMIRHAM_11460 alr1; alanine racemase 1 K01775 alr; alanine racemase [EC:5.1.1.1] D THMIRHAM_06550 cytochrome c550 K00824 dat; D-alanine transaminase [EC:2.6.1.21] D THMIRHAM_16360 ddlB; D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D THMIRHAM_16550 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D THMIRHAM_09620 acdS; 1-aminocyclopropane-1-carboxylate deaminase K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15] D THMIRHAM_04540 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D THMIRHAM_19190 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] C 00480 Glutathione metabolism [PATH:tib00480] D THMIRHAM_16850 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D THMIRHAM_18910 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D THMIRHAM_14610 gshB_1; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3] D THMIRHAM_18920 gshB_2; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3] D THMIRHAM_05020 pepA; putative cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D THMIRHAM_07350 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D THMIRHAM_12530 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D THMIRHAM_01400 glutathione-disulfide reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7] D THMIRHAM_10270 icd; isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D THMIRHAM_21790 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D THMIRHAM_21780 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D THMIRHAM_01390 glutathione amide-dependent peroxidase K24136 pgdX; glutathione-dependent peroxiredoxin [EC:1.11.1.27] D THMIRHAM_03290 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D THMIRHAM_03280 speE; polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis [PATH:tib00540] D THMIRHAM_12170 lpxA; acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D THMIRHAM_16330 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D THMIRHAM_12190 lpxD; UDP-3-O-acylglucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D THMIRHAM_13640 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D THMIRHAM_12160 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D THMIRHAM_09700 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D THMIRHAM_04620 kpsF; arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D THMIRHAM_12020 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D THMIRHAM_05770 hypothetical protein K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D THMIRHAM_09720 kdsB_1; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D THMIRHAM_22030 kdsB_3; 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D THMIRHAM_04630 hypothetical protein K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-] D THMIRHAM_04660 gmhA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D THMIRHAM_04650 hldE; bifunctional protein HldE K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D THMIRHAM_04180 D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D THMIRHAM_17350 hldD; ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D THMIRHAM_17340 waaC; ADP-heptose--LPS heptosyltransferase K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:tib00541] D THMIRHAM_05080 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D THMIRHAM_05060 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D THMIRHAM_05240 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D THMIRHAM_05310 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D THMIRHAM_05260 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D THMIRHAM_05280 rmlD; NAD(P)-dependent oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D THMIRHAM_21170 xanB; xanthan biosynthesis protein XanB K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D THMIRHAM_22180 glmU; bifunctional protein GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D THMIRHAM_04760 pseB; UDP-N-acetylglucosamine 4,6-dehydratase (inverting) K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-] D THMIRHAM_04780 rkpN; pseudaminic acid cytidylyltransferase K15899 pseF; pseudaminic acid cytidylyltransferase [EC:2.7.7.81] C 00550 Peptidoglycan biosynthesis [PATH:tib00550] D THMIRHAM_05880 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D THMIRHAM_12380 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D THMIRHAM_16370 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D THMIRHAM_16550 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D THMIRHAM_16360 ddlB; D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D THMIRHAM_12240 uppS; isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D THMIRHAM_18720 uppP; undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D THMIRHAM_16560 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D THMIRHAM_16530 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D THMIRHAM_20820 ponA; peptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D THMIRHAM_06580 pbpA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D THMIRHAM_16590 ftsI; penicillin-binding protein 3 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D THMIRHAM_06560 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] C 00552 Teichoic acid biosynthesis [PATH:tib00552] D THMIRHAM_18720 uppP; undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:tib00543] D THMIRHAM_04890 undecaprenyl-phosphate glucose phosphotransferase K03606 wcaJ; undecaprenyl-phosphate glucose phosphotransferase [EC:2.7.8.31] D THMIRHAM_16020 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:tib00730] D THMIRHAM_10910 thiC; phosphomethylpyrimidine synthase K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D THMIRHAM_01300 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D THMIRHAM_07270 thiI; tRNA sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D THMIRHAM_10920 oxidoreductase K03153 thiO; glycine oxidase [EC:1.4.3.19] D THMIRHAM_10940 thiG; thiazole synthase K03149 thiG; thiazole synthase [EC:2.8.1.10] D THMIRHAM_14710 thiE; thiamine-phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D THMIRHAM_13990 thiL; thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D THMIRHAM_15890 rsgA; putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D THMIRHAM_20840 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:tib00740] D THMIRHAM_14020 ribB; 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D THMIRHAM_14040 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D THMIRHAM_14010 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D THMIRHAM_14030 ribC; riboflavin synthase subunit alpha K00793 ribE; riboflavin synthase [EC:2.5.1.9] D THMIRHAM_17950 riboflavin biosynthesis protein K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D THMIRHAM_11470 nudF; ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] C 00750 Vitamin B6 metabolism [PATH:tib00750] D THMIRHAM_04270 pdxH_1; pyridoxine/pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D THMIRHAM_21270 pdxH_2; pyridoxine/pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D THMIRHAM_11310 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D THMIRHAM_06370 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D THMIRHAM_09450 pdxJ; pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2] D THMIRHAM_11900 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:tib00760] D THMIRHAM_09370 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D THMIRHAM_13930 nadA; quinolinate synthase A K03517 nadA; quinolinate synthase [EC:2.5.1.72] D THMIRHAM_13240 nadC; nicotinate-nucleotide diphosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D THMIRHAM_11980 surE; 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D THMIRHAM_18030 nadD; putative nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D THMIRHAM_13330 nadE2; NAD+ synthase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] D THMIRHAM_07040 hypothetical protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D THMIRHAM_08980 nadK; NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D THMIRHAM_19460 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:tib00770] D THMIRHAM_00270 ilvB_1; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D THMIRHAM_15850 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D THMIRHAM_17970 ilvB_2; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D THMIRHAM_15840 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D THMIRHAM_15830 ilvC; ketol-acid reductoisomerase (NADP(+)) K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D THMIRHAM_16190 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D THMIRHAM_07190 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D THMIRHAM_07200 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D THMIRHAM_19700 coaBC; coenzyme A biosynthesis bifunctional protein CoaBC K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D THMIRHAM_19940 coaD; phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D THMIRHAM_16260 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D THMIRHAM_09460 acpS; holo-[acyl-carrier-protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D THMIRHAM_17420 ilvE; branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D THMIRHAM_07230 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] C 00780 Biotin metabolism [PATH:tib00780] D THMIRHAM_01770 bioC; malonyl-[acyl-carrier protein] O-methyltransferase K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197] D THMIRHAM_08860 fabF_2; beta-ketoacyl-[acyl-carrier-protein] synthase II K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D THMIRHAM_20070 fabB; beta-ketoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D THMIRHAM_08430 fabF_1; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D THMIRHAM_08830 fabG_2; 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D THMIRHAM_08410 fabG_1; beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D THMIRHAM_12180 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D THMIRHAM_11140 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D THMIRHAM_01800 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D THMIRHAM_03330 bioA; adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D THMIRHAM_01810 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6] C 00785 Lipoic acid metabolism [PATH:tib00785] D THMIRHAM_06530 lipB; octanoyltransferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D THMIRHAM_06520 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D THMIRHAM_07290 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D THMIRHAM_13150 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D THMIRHAM_13170 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D THMIRHAM_13160 hypothetical protein K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D THMIRHAM_08160 gcvP; glycine dehydrogenase (decarboxylating) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D THMIRHAM_08140 gcvT2; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D THMIRHAM_08150 gcvH_1; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D THMIRHAM_19220 gcvH_2; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:tib00790] D THMIRHAM_19400 folE2; GTP cyclohydrolase FolE2 K09007 folE2; GTP cyclohydrolase IB [EC:3.5.4.16] D THMIRHAM_18680 folB; 7,8-dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D THMIRHAM_07180 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D THMIRHAM_15060 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D THMIRHAM_16480 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D THMIRHAM_15130 folC; bifunctional folylpolyglutamate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D THMIRHAM_14020 ribB; 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D THMIRHAM_08440 trpE; hypothetical protein K25578 pabB; 4-amino-4-deoxychorismate synthase (2-amino-4-deoxychorismate-forming) component I [EC:2.6.1.123] D THMIRHAM_19370 dihydromonapterin reductase K13938 folM; dihydromonapterin reductase / dihydrofolate reductase [EC:1.5.1.50 1.5.1.3] D THMIRHAM_09330 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D THMIRHAM_15880 hypothetical protein K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D THMIRHAM_15250 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D THMIRHAM_13830 queC; 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D THMIRHAM_22360 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D THMIRHAM_01510 moaA; GTP 3',8-cyclase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D THMIRHAM_01550 moaC; cyclic pyranopterin monophosphate synthase accessory protein K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D THMIRHAM_01530 moaE; molybdopterin converting factor subunit 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D THMIRHAM_15480 mogA; molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D THMIRHAM_01540 moeA1; molybdopterin molybdenumtransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] C 00670 One carbon pool by folate [PATH:tib00670] D THMIRHAM_16480 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D THMIRHAM_19370 dihydromonapterin reductase K13938 folM; dihydromonapterin reductase / dihydrofolate reductase [EC:1.5.1.50 1.5.1.3] D THMIRHAM_00680 fhs; formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D THMIRHAM_08510 folD; bifunctional protein FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D THMIRHAM_14060 glyA1; serine hydroxymethyltransferase 1 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D THMIRHAM_14580 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D THMIRHAM_17800 purH; bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D THMIRHAM_02380 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D THMIRHAM_08140 gcvT2; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D THMIRHAM_02200 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D THMIRHAM_16490 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D THMIRHAM_01220 purU1; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D THMIRHAM_18880 metF; methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D THMIRHAM_14260 ygfA; 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:tib00860] D THMIRHAM_11620 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D THMIRHAM_04410 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D THMIRHAM_14720 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D THMIRHAM_01470 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D THMIRHAM_01150 hemC; porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D THMIRHAM_20690 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D THMIRHAM_00110 hemF; oxygen-dependent coproporphyrinogen-III oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3] D THMIRHAM_17860 hemN; coproporphyrinogen-III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3] D THMIRHAM_12630 membrane protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-] D THMIRHAM_19360 hemH2_1; ferrochelatase 2 K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D THMIRHAM_21360 hemH2_2; ferrochelatase 2 K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D THMIRHAM_09810 cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D THMIRHAM_09830 hypothetical protein K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D THMIRHAM_09740 cobP; adenosylcobinamide kinase/adenosylcobinamide phosphate guanyltransferase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] D THMIRHAM_09770 cobS; adenosylcobinamide-GDP ribazoletransferase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D THMIRHAM_09750 cobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:tib00130] D THMIRHAM_22160 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D THMIRHAM_14210 2-octaprenyl-6-methoxyphenol hydroxylase K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240] D THMIRHAM_11290 ubiG; ubiquinone biosynthesis O-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D THMIRHAM_04510 ubiE; ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:tib00900] D THMIRHAM_16930 hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D THMIRHAM_16910 hydroxymethylglutaryl-CoA reductase (NADPH) K00021 HMGCR; hydroxymethylglutaryl-CoA reductase (NADPH) [EC:1.1.1.34] D THMIRHAM_16960 hypothetical protein K01597 MVD; diphosphomevalonate decarboxylase [EC:4.1.1.33] D THMIRHAM_16920 fni; isopentenyl-diphosphate delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] D THMIRHAM_09340 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D THMIRHAM_03990 ispB; octaprenyl-diphosphate synthase IspB K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D THMIRHAM_12240 uppS; isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D THMIRHAM_15870 peptidase K06013 STE24; STE24 endopeptidase [EC:3.4.24.84] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D THMIRHAM_02860 tkt1; transketolase 1 K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:tib00523] D THMIRHAM_05240 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D THMIRHAM_05310 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D THMIRHAM_05260 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D THMIRHAM_05280 rmlD; NAD(P)-dependent oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics D THMIRHAM_05310 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis [PATH:tib00332] D THMIRHAM_04030 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D THMIRHAM_18040 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:tib00261] D THMIRHAM_05440 cysN; sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D THMIRHAM_05420 cysD; sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D THMIRHAM_02750 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D THMIRHAM_07080 lysC; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D THMIRHAM_15190 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D THMIRHAM_14160 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D THMIRHAM_09030 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:tib00521] D THMIRHAM_20460 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D THMIRHAM_05050 xanA; phosphohexose mutases K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D THMIRHAM_05980 phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D THMIRHAM_16040 suhB; inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D THMIRHAM_05240 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D THMIRHAM_05310 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D THMIRHAM_05260 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D THMIRHAM_05280 rmlD; NAD(P)-dependent oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis C 00525 Acarbose and validamycin biosynthesis [PATH:tib00525] D THMIRHAM_05240 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D THMIRHAM_05310 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:tib00401] D THMIRHAM_04930 aatA; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D THMIRHAM_11330 hisC2; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D THMIRHAM_16290 hisC1; histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis D THMIRHAM_03200 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D THMIRHAM_03210 glutamine amidotransferase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D THMIRHAM_08400 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D THMIRHAM_08830 fabG_2; 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D THMIRHAM_08410 fabG_1; beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D THMIRHAM_11140 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D THMIRHAM_08740 acpC; acyl carrier protein K02078 acpP; acyl carrier protein D THMIRHAM_08420 acpP; acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites [PATH:tib00999] D THMIRHAM_18870 metK; S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D THMIRHAM_01460 aroE; shikimate dehydrogenase (NADP(+)) K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation D THMIRHAM_17290 hypothetical protein K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] C 00627 Aminobenzoate degradation C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation C 00361 Chlorocyclohexane and chlorobenzene degradation C 00623 Toluene degradation C 00622 Xylene degradation D THMIRHAM_17290 hypothetical protein K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] C 00633 Nitrotoluene degradation [PATH:tib00633] D THMIRHAM_12830 alkene reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-] C 00642 Ethylbenzene degradation C 00643 Styrene degradation C 00791 Atrazine degradation [PATH:tib00791] D THMIRHAM_08570 allophanate hydrolase K01457 atzF; allophanate hydrolase [EC:3.5.1.54] D THMIRHAM_08580 urea carboxylase K01941 uca; urea carboxylase [EC:6.3.4.6] C 00930 Caprolactam degradation C 00363 Bisphenol degradation C 00621 Dioxin degradation D THMIRHAM_17290 hypothetical protein K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] C 00626 Naphthalene degradation C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:tib03020] D THMIRHAM_03420 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D THMIRHAM_03430 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D THMIRHAM_03730 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D THMIRHAM_22050 hypothetical protein K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:tib03010] D THMIRHAM_11370 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D THMIRHAM_12280 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D THMIRHAM_03550 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D THMIRHAM_03720 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D THMIRHAM_03660 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D THMIRHAM_11410 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D THMIRHAM_03450 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D THMIRHAM_03630 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D THMIRHAM_18220 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D THMIRHAM_03480 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D THMIRHAM_03710 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D THMIRHAM_03440 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D THMIRHAM_03700 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D THMIRHAM_03620 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D THMIRHAM_10760 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D THMIRHAM_06020 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D THMIRHAM_03580 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D THMIRHAM_11420 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D THMIRHAM_03530 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D THMIRHAM_18000 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D THMIRHAM_18650 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D THMIRHAM_03390 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D THMIRHAM_03520 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D THMIRHAM_03490 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D THMIRHAM_03500 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D THMIRHAM_03610 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D THMIRHAM_03640 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D THMIRHAM_03410 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D THMIRHAM_11440 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D THMIRHAM_03400 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D THMIRHAM_03380 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D THMIRHAM_18230 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D THMIRHAM_03590 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D THMIRHAM_03680 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D THMIRHAM_03560 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D THMIRHAM_03740 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D THMIRHAM_03650 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D THMIRHAM_06050 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D THMIRHAM_15600 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D THMIRHAM_04000 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D THMIRHAM_03540 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D THMIRHAM_03510 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D THMIRHAM_03600 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D THMIRHAM_04440 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D THMIRHAM_04010 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D THMIRHAM_19820 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D THMIRHAM_03570 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D THMIRHAM_03670 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D THMIRHAM_20670 rpmE2; 50S ribosomal protein L31 type B K02909 RP-L31; large subunit ribosomal protein L31 D THMIRHAM_08370 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D THMIRHAM_19830 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D THMIRHAM_22490 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D THMIRHAM_15610 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D THMIRHAM_12130 hypothetical protein K02919 RP-L36; large subunit ribosomal protein L36 C 00970 Aminoacyl-tRNA biosynthesis [PATH:tib00970] D THMIRHAM_t00330 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D THMIRHAM_t00400 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D THMIRHAM_t00450 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D THMIRHAM_t00270 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D THMIRHAM_t00200 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D THMIRHAM_t00220 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D THMIRHAM_t00240 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D THMIRHAM_t00260 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D THMIRHAM_t00160 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D THMIRHAM_t00250 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D THMIRHAM_t00340 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D THMIRHAM_t00410 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D THMIRHAM_t00460 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D THMIRHAM_t00310 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D THMIRHAM_t00090 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D THMIRHAM_t00280 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D THMIRHAM_t00290 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D THMIRHAM_t00300 tRNA-Met K14230 tRNA-Met; tRNA Met D THMIRHAM_t00370 tRNA-Met K14230 tRNA-Met; tRNA Met D THMIRHAM_t00100 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D THMIRHAM_t00040 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D THMIRHAM_t00010 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D THMIRHAM_t00080 tRNA-Val K14237 tRNA-Val; tRNA Val D THMIRHAM_11620 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D THMIRHAM_06630 gatA; glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D THMIRHAM_06640 gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D THMIRHAM_06620 gatC; glutamyl-tRNA(Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D THMIRHAM_09910 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D THMIRHAM_07070 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D THMIRHAM_13940 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D THMIRHAM_04160 glyQ; glycine--tRNA ligase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D THMIRHAM_04170 glyS; glycine--tRNA ligase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D THMIRHAM_15630 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D THMIRHAM_08180 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D THMIRHAM_13610 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D THMIRHAM_10090 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D THMIRHAM_02380 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D THMIRHAM_06110 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D THMIRHAM_18070 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D THMIRHAM_17940 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D THMIRHAM_09270 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D THMIRHAM_02430 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D THMIRHAM_14400 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D THMIRHAM_15960 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D THMIRHAM_15590 pheS; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D THMIRHAM_15580 pheT; phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D THMIRHAM_20100 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D THMIRHAM_07120 trpS-2; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:tib03060] D THMIRHAM_03690 secY; protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D THMIRHAM_03360 secE; protein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D THMIRHAM_15030 secG; protein-export membrane protein SecG K03075 secG; preprotein translocase subunit SecG D THMIRHAM_05680 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D THMIRHAM_05690 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D THMIRHAM_05670 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D THMIRHAM_22470 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D THMIRHAM_16310 secA; protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D THMIRHAM_20140 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB D THMIRHAM_06010 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D THMIRHAM_20040 ftsY; signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor D THMIRHAM_01900 tatA; Sec-independent protein translocase protein TatA K03116 tatA; sec-independent protein translocase protein TatA D THMIRHAM_01880 hypothetical protein K03118 tatC; sec-independent protein translocase protein TatC D THMIRHAM_09410 lepB-1; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D THMIRHAM_17930 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:tib04122] D THMIRHAM_06090 thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D THMIRHAM_10250 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D THMIRHAM_01530 moaE; molybdopterin converting factor subunit 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D THMIRHAM_01510 moaA; GTP 3',8-cyclase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D THMIRHAM_01520 moaD; molybdopterin synthase sulfur carrier subunit K03636 moaD; sulfur-carrier protein D THMIRHAM_04380 moeB; molybdopterin-synthase adenylyltransferase MoeB K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D THMIRHAM_01550 moaC; cyclic pyranopterin monophosphate synthase accessory protein K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D THMIRHAM_15480 mogA; molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D THMIRHAM_07270 thiI; tRNA sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] C 03050 Proteasome C 03018 RNA degradation [PATH:tib03018] D THMIRHAM_13180 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D THMIRHAM_08320 hypothetical protein K08300 rne; ribonuclease E [EC:3.1.26.12] D THMIRHAM_12010 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D THMIRHAM_10770 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D THMIRHAM_09180 rhlE_1; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D THMIRHAM_10350 RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D THMIRHAM_13080 rhlE_2; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D THMIRHAM_07300 vacB; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D THMIRHAM_01580 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D THMIRHAM_00290 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D THMIRHAM_20660 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D THMIRHAM_09010 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D THMIRHAM_04050 groL1; 60 kDa chaperonin 1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D THMIRHAM_10140 hypothetical protein K03666 hfq; host factor-I protein D THMIRHAM_19520 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D THMIRHAM_19020 hypothetical protein K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D THMIRHAM_07170 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:tib03030] D THMIRHAM_10680 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D THMIRHAM_13550 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D THMIRHAM_16810 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D THMIRHAM_10590 dnaE; DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D THMIRHAM_08480 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D THMIRHAM_18050 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D THMIRHAM_05010 hypothetical protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D THMIRHAM_00020 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D THMIRHAM_11450 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D THMIRHAM_18630 hypothetical protein K02316 dnaG; DNA primase [EC:2.7.7.101] D THMIRHAM_03810 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D THMIRHAM_13560 rnhA_2; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D THMIRHAM_12150 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D THMIRHAM_00180 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D THMIRHAM_11780 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:tib03410] D THMIRHAM_10020 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D THMIRHAM_04260 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D THMIRHAM_20730 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D THMIRHAM_19860 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D THMIRHAM_01210 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D THMIRHAM_19560 nfo; putative endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D THMIRHAM_00180 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D THMIRHAM_11890 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D THMIRHAM_11780 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:tib03420] D THMIRHAM_11010 mfd; transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D THMIRHAM_03780 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A D THMIRHAM_04940 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B D THMIRHAM_10850 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C D THMIRHAM_20640 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D THMIRHAM_00180 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D THMIRHAM_11780 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:tib03430] D THMIRHAM_07030 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D THMIRHAM_10120 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D THMIRHAM_20640 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D THMIRHAM_11580 hypothetical protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D THMIRHAM_11890 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D THMIRHAM_03810 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D THMIRHAM_10590 dnaE; DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D THMIRHAM_00020 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D THMIRHAM_18050 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D THMIRHAM_08480 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D THMIRHAM_10680 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D THMIRHAM_13550 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D THMIRHAM_16810 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D THMIRHAM_05010 hypothetical protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D THMIRHAM_11780 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:tib03440] D THMIRHAM_11890 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D THMIRHAM_03810 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D THMIRHAM_00040 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D THMIRHAM_09440 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D THMIRHAM_17460 recR; recombination protein RecR K06187 recR; recombination protein RecR D THMIRHAM_07050 recA; protein RecA K03553 recA; recombination protein RecA D THMIRHAM_00180 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D THMIRHAM_13910 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D THMIRHAM_13900 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D THMIRHAM_13920 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D THMIRHAM_22110 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D THMIRHAM_10590 dnaE; DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D THMIRHAM_00020 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D THMIRHAM_18050 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D THMIRHAM_08480 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D THMIRHAM_10680 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D THMIRHAM_13550 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D THMIRHAM_16810 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D THMIRHAM_05010 hypothetical protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D THMIRHAM_01740 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:tib02010] D THMIRHAM_19900 modA_2; molybdate-binding periplasmic protein ModA K02020 modA; molybdate transport system substrate-binding protein D THMIRHAM_19890 modB; molybdenum transporter ModB K02018 modB; molybdate transport system permease protein D THMIRHAM_19880 modC; molybdenum import ATP-binding protein ModC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D THMIRHAM_21700 potF; putrescine-binding periplasmic protein K11073 potF; putrescine transport system substrate-binding protein D THMIRHAM_21730 putrescine ABC transporter permease PotI K11074 potI; putrescine transport system permease protein D THMIRHAM_21720 putrescine ABC transporter permease K11075 potH; putrescine transport system permease protein D THMIRHAM_21710 polyamine-transporting ATPase K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D THMIRHAM_05830 hypothetical protein K07323 mlaC; phospholipid transport system substrate-binding protein D THMIRHAM_05820 mlaD; putative phospholipid ABC transporter-binding protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D THMIRHAM_05810 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D THMIRHAM_05840 hypothetical protein K07122 mlaB; phospholipid transport system transporter-binding protein D THMIRHAM_05800 yrbF; ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D THMIRHAM_06280 pstS; phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D THMIRHAM_06210 phosphate ABC transporter permease K02037 pstC; phosphate transport system permease protein D THMIRHAM_06220 pstA; phosphate transport system permease protein PstA K02038 pstA; phosphate transport system permease protein D THMIRHAM_06230 pstB; phosphate import ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D THMIRHAM_16460 znuB; membrane protein K09816 znuB; zinc transport system permease protein D THMIRHAM_16450 znuC; zinc import ATP-binding protein ZnuC K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D THMIRHAM_15270 mntA; manganese-binding lipoprotein MntA K11707 troA; manganese/zinc/iron transport system substrate-binding protein D THMIRHAM_15290 mntC; manganese transport system membrane protein MntC K11708 troC; manganese/zinc/iron transport system permease protein D THMIRHAM_15300 mntD; manganese transport system membrane protein MntD K11709 troD; manganese/zinc/iron transport system permease protein D THMIRHAM_15280 mntB; manganese transport system ATP-binding protein MntB K11710 troB; manganese/zinc/iron transport system ATP- binding protein [EC:7.2.2.5] D THMIRHAM_05220 ABC transporter ATP-binding protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12] D THMIRHAM_11050 lipoprotein releasing system protein K09808 lolC_E; lipoprotein-releasing system permease protein D THMIRHAM_11060 lolD; lipoprotein-releasing system ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D THMIRHAM_05040 LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein D THMIRHAM_05740 ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D THMIRHAM_17390 msbA; lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D THMIRHAM_02520 ABC transporter K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D THMIRHAM_14830 ABC transporter K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB C 02060 Phosphotransferase system (PTS) C 03070 Bacterial secretion system [PATH:tib03070] D THMIRHAM_21150 xcpQ; type II secretion system protein GspD K02453 gspD; general secretion pathway protein D D THMIRHAM_21130 xcpS; type II secretion system protein GspF K02455 gspF; general secretion pathway protein F D THMIRHAM_21120 gspG; type II secretion system protein GspG K02456 gspG; general secretion pathway protein G D THMIRHAM_17180 type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D THMIRHAM_21140 xcpR; type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D THMIRHAM_05680 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D THMIRHAM_05690 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D THMIRHAM_03360 secE; protein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D THMIRHAM_15030 secG; protein-export membrane protein SecG K03075 secG; preprotein translocase subunit SecG D THMIRHAM_03690 secY; protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D THMIRHAM_05670 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D THMIRHAM_22470 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D THMIRHAM_16310 secA; protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D THMIRHAM_20040 ftsY; signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor D THMIRHAM_20140 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB D THMIRHAM_06010 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D THMIRHAM_01900 tatA; Sec-independent protein translocase protein TatA K03116 tatA; sec-independent protein translocase protein TatA D THMIRHAM_01880 hypothetical protein K03118 tatC; sec-independent protein translocase protein TatC B B 09132 Signal transduction C 02020 Two-component system [PATH:tib02020] D THMIRHAM_06260 phoR; PAS domain-containing sensor histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D THMIRHAM_06250 phoB; DNA-binding response regulator K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D THMIRHAM_06280 pstS; phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D THMIRHAM_09390 serine peptidase K04771 degP; serine protease Do [EC:3.4.21.107] D THMIRHAM_07620 fliC_2; flagellin K02406 fliC; flagellin D THMIRHAM_07630 fliC_3; flagellin K02406 fliC; flagellin D THMIRHAM_07930 fliA; RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA D THMIRHAM_07800 motA_2; flagellar motor protein MotA K02556 motA; chemotaxis protein MotA D THMIRHAM_04360 flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D THMIRHAM_04200 motA_1; motility protein A K02556 motA; chemotaxis protein MotA D THMIRHAM_07210 flagellar motor protein PomA K02556 motA; chemotaxis protein MotA D THMIRHAM_00010 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D THMIRHAM_07100 hypothetical protein K03563 csrA; carbon storage regulator D THMIRHAM_17530 type II secretion system protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D THMIRHAM_12300 glnD; bifunctional uridylyltransferase/uridylyl-removing enzyme K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59] D THMIRHAM_13780 ntrB; PAS domain-containing sensor histidine kinase K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D THMIRHAM_13770 ntrC; sigma-54-dependent Fis family transcriptional regulator K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D THMIRHAM_06200 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D THMIRHAM_02350 two-component sensor histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D THMIRHAM_02340 ntrX; sigma-54-dependent Fis family transcriptional regulator K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX D THMIRHAM_01630 nifA-2; Nif-specific regulatory protein K02584 nifA; Nif-specific regulatory protein D THMIRHAM_11550 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D THMIRHAM_08030 cheR; chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D THMIRHAM_22090 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D THMIRHAM_08050 mcp; chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D THMIRHAM_08010 cheW; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D THMIRHAM_07970 cheW-2; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D THMIRHAM_09320 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D THMIRHAM_06840 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D THMIRHAM_07960 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D THMIRHAM_00380 hypothetical protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D THMIRHAM_07940 cheY_1; response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D THMIRHAM_08000 cheY_2; Fis family transcriptional regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D THMIRHAM_10210 Fis family transcriptional regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D THMIRHAM_08040 cheB1; chemotaxis response regulator protein-glutamate methylesterase of group 1 operon K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D THMIRHAM_07450 chemotaxis protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D THMIRHAM_12140 chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D THMIRHAM_07690 hypothetical protein K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D THMIRHAM_07700 fleS; PAS domain-containing sensor histidine kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3] D THMIRHAM_07710 fleR; sigma-54-dependent Fis family transcriptional regulator K10943 flrC; two-component system, response regulator FlrC D THMIRHAM_08210 DNA-binding response regulator K15012 regA; two-component system, response regulator RegA D THMIRHAM_05920 petA; ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D THMIRHAM_05930 petB; cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D THMIRHAM_05940 petC; cytochrome c K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D THMIRHAM_01970 cytochrome c oxidase, cbb3-type subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D THMIRHAM_01980 ccoO2; cbb3-type cytochrome c oxidase subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D THMIRHAM_02000 fixP; Cbb3-type cytochrome c oxidase subunit FixP K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D THMIRHAM_08310 ptpA; phosphotyrosine protein phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D THMIRHAM_10100 anti-anti-sigma regulatory factor K20978 hsbA; HptB-dependent secretion and biofilm anti anti-sigma factor C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis [PATH:tib04148] D THMIRHAM_03290 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D THMIRHAM_05920 petA; ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:tib02024] D THMIRHAM_21840 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D THMIRHAM_10140 hypothetical protein K03666 hfq; host factor-I protein D THMIRHAM_03200 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D THMIRHAM_03210 glutamine amidotransferase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D THMIRHAM_13980 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D THMIRHAM_08540 N-acyl homoserine lactonase K13075 ahlD; N-acyl homoserine lactone hydrolase [EC:3.1.1.81] D THMIRHAM_14040 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D THMIRHAM_11150 hbpA; ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D THMIRHAM_12460 peptide-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D THMIRHAM_11160 oppB; peptide ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D THMIRHAM_12430 peptide ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D THMIRHAM_11170 oppC; peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D THMIRHAM_12420 cytochrome c550 K02034 ABC.PE.P1; peptide/nickel transport system permease protein D THMIRHAM_11180 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D THMIRHAM_22470 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D THMIRHAM_03360 secE; protein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D THMIRHAM_15030 secG; protein-export membrane protein SecG K03075 secG; preprotein translocase subunit SecG D THMIRHAM_03690 secY; protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D THMIRHAM_05670 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D THMIRHAM_16310 secA; protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D THMIRHAM_20040 ftsY; signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor D THMIRHAM_20140 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB D THMIRHAM_06010 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:tib02030] D THMIRHAM_22090 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D THMIRHAM_08050 mcp; chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D THMIRHAM_06840 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D THMIRHAM_07960 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D THMIRHAM_08010 cheW; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D THMIRHAM_07970 cheW-2; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D THMIRHAM_09320 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D THMIRHAM_00380 hypothetical protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D THMIRHAM_07940 cheY_1; response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D THMIRHAM_08000 cheY_2; Fis family transcriptional regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D THMIRHAM_10210 Fis family transcriptional regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D THMIRHAM_08040 cheB1; chemotaxis response regulator protein-glutamate methylesterase of group 1 operon K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D THMIRHAM_07450 chemotaxis protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D THMIRHAM_12140 chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D THMIRHAM_06830 cheD1; putative chemoreceptor glutamine deamidase CheD 1 K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D THMIRHAM_08030 cheR; chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D THMIRHAM_07740 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D THMIRHAM_07830 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D THMIRHAM_07840 hypothetical protein K02417 fliN; flagellar motor switch protein FliN D THMIRHAM_07800 motA_2; flagellar motor protein MotA K02556 motA; chemotaxis protein MotA D THMIRHAM_04360 flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D THMIRHAM_04200 motA_1; motility protein A K02556 motA; chemotaxis protein MotA D THMIRHAM_07210 flagellar motor protein PomA K02556 motA; chemotaxis protein MotA D THMIRHAM_07810 hypothetical protein K02557 motB; chemotaxis protein MotB D THMIRHAM_04370 motD; flagellar motor protein MotD K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:tib02040] D THMIRHAM_07720 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D THMIRHAM_07730 fliF; flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF D THMIRHAM_07740 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D THMIRHAM_07760 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D THMIRHAM_07820 hypothetical protein K02415 fliL; flagellar protein FliL D THMIRHAM_07830 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D THMIRHAM_07840 hypothetical protein K02417 fliN; flagellar motor switch protein FliN D THMIRHAM_07850 flagellar protein K02418 fliO; flagellar protein FliO/FliZ D THMIRHAM_07860 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D THMIRHAM_07870 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D THMIRHAM_07880 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D THMIRHAM_07900 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D THMIRHAM_07890 flhB; flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D THMIRHAM_07470 flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D THMIRHAM_07480 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D THMIRHAM_07510 flgF; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D THMIRHAM_07520 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D THMIRHAM_07530 flgH; flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH D THMIRHAM_07550 flgI; flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI D THMIRHAM_07390 hypothetical protein K09860 flgP; outer membrane protein FlgP D THMIRHAM_07620 fliC_2; flagellin K02406 fliC; flagellin D THMIRHAM_07630 fliC_3; flagellin K02406 fliC; flagellin D THMIRHAM_21890 hypothetical protein K02422 fliS; flagellar secretion chaperone FliS D THMIRHAM_07800 motA_2; flagellar motor protein MotA K02556 motA; chemotaxis protein MotA D THMIRHAM_04360 flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D THMIRHAM_04200 motA_1; motility protein A K02556 motA; chemotaxis protein MotA D THMIRHAM_07210 flagellar motor protein PomA K02556 motA; chemotaxis protein MotA D THMIRHAM_07810 hypothetical protein K02557 motB; chemotaxis protein MotB D THMIRHAM_04370 motD; flagellar motor protein MotD K02557 motB; chemotaxis protein MotB D THMIRHAM_18620 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D THMIRHAM_07690 hypothetical protein K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D THMIRHAM_11550 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D THMIRHAM_07710 fleR; sigma-54-dependent Fis family transcriptional regulator K10943 flrC; two-component system, response regulator FlrC D THMIRHAM_07930 fliA; RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D THMIRHAM_12010 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism D THMIRHAM_02200 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:tib01501] D THMIRHAM_12400 nagZ; beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D THMIRHAM_00850 multidrug transporter K18138 acrB; multidrug efflux pump D THMIRHAM_03940 multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump D THMIRHAM_20820 ponA; peptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D THMIRHAM_06580 pbpA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D THMIRHAM_16590 ftsI; penicillin-binding protein 3 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:tib01502] D THMIRHAM_16360 ddlB; D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D THMIRHAM_11460 alr1; alanine racemase 1 K01775 alr; alanine racemase [EC:5.1.1.1] D THMIRHAM_16560 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D THMIRHAM_16530 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:tib01503] D THMIRHAM_09390 serine peptidase K04771 degP; serine protease Do [EC:3.4.21.107] D THMIRHAM_00850 multidrug transporter K18138 acrB; multidrug efflux pump D THMIRHAM_03940 multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump D THMIRHAM_12170 lpxA; acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:tib01000] C 01001 Protein kinases [BR:tib01001] D THMIRHAM_10400 serine/threonine protein kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D THMIRHAM_06260 phoR; PAS domain-containing sensor histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D THMIRHAM_13780 ntrB; PAS domain-containing sensor histidine kinase K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D THMIRHAM_02350 two-component sensor histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D THMIRHAM_06840 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D THMIRHAM_07960 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D THMIRHAM_07700 fleS; PAS domain-containing sensor histidine kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:tib01009] D THMIRHAM_06880 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG D THMIRHAM_06770 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:tib01002] D THMIRHAM_17930 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] D THMIRHAM_13960 pilD; type 4 prepilin-like proteins leader peptide-processing enzyme K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D THMIRHAM_06810 guaA; GMP synthase [glutamine-hydrolyzing] K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D THMIRHAM_09040 spr; bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase K13695 nlpC; probable lipoprotein NlpC D THMIRHAM_15110 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D THMIRHAM_20200 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D THMIRHAM_04750 glmS; glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D THMIRHAM_16230 asparagine synthetase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D THMIRHAM_18560 thiJ; protease K03152 thiJ; protein deglycase [EC:3.5.1.124] D THMIRHAM_07350 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D THMIRHAM_00530 oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70] D THMIRHAM_10780 preP2; peptidase M16 K06972 PITRM1; presequence protease [EC:3.4.24.-] D THMIRHAM_20020 peptidase M16 K07263 pqqL; zinc protease [EC:3.4.24.-] D THMIRHAM_20030 peptidase M16 K07263 pqqL; zinc protease [EC:3.4.24.-] D THMIRHAM_05020 pepA; putative cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D THMIRHAM_12340 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D THMIRHAM_12290 map; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D THMIRHAM_14230 pepP; Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D THMIRHAM_15070 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D THMIRHAM_15870 peptidase K06013 STE24; STE24 endopeptidase [EC:3.4.24.84] D THMIRHAM_06690 htpX; protease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D THMIRHAM_09390 serine peptidase K04771 degP; serine protease Do [EC:3.4.21.107] D THMIRHAM_06560 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D THMIRHAM_11100 clpP; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D THMIRHAM_11120 lon_1; Lon protease K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D THMIRHAM_15490 lon_2; Lon protease K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D THMIRHAM_11740 hypothetical protein K01356 lexA; repressor LexA [EC:3.4.21.88] D THMIRHAM_19240 umuD; DNA polymerase V K03503 umuD; DNA polymerase V [EC:3.4.21.-] D THMIRHAM_09410 lepB-1; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D THMIRHAM_02110 proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D THMIRHAM_18570 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D THMIRHAM_10840 peptidase K04773 sppA; protease IV [EC:3.4.21.-] D THMIRHAM_04570 hslV; ATP-dependent protease subunit HslV K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D THMIRHAM_16850 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D THMIRHAM_21290 gamma-glutamyltransferase K22602 hpxW; oxamate amidohydrolase [EC:3.5.1.126] D THMIRHAM_12560 U32 family peptidase K08303 prtC; U32 family peptidase [EC:3.4.-.-] D THMIRHAM_10170 hflC; protein HflC K04087 hflC; modulator of FtsH protease HflC D THMIRHAM_10160 hypothetical protein K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases [BR:tib01003] D THMIRHAM_17100 dolichol monophosphate mannose synthase K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83] D THMIRHAM_04720 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21] D THMIRHAM_20820 ponA; peptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D THMIRHAM_21810 glycosyl transferase K13693 gpgS; glucosyl-3-phosphoglycerate synthase [EC:2.4.1.266] C 01005 Lipopolysaccharide biosynthesis proteins [BR:tib01005] D THMIRHAM_12170 lpxA; acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D THMIRHAM_12160 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D THMIRHAM_16330 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D THMIRHAM_12190 lpxD; UDP-3-O-acylglucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D THMIRHAM_13640 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D THMIRHAM_09700 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D THMIRHAM_04630 hypothetical protein K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-] D THMIRHAM_22010 kdnA; 8-amino-3,8-dideoxy-alpha-D-manno-octulosonate transaminase K19715 kdnA; 8-amino-3,8-dideoxy-alpha-D-manno-octulosonate transaminase [EC:2.6.1.109] D THMIRHAM_22020 kdnB; 3-deoxy-alpha-D-manno-octulosonate 8-oxidase K19714 kdnB; 3-deoxy-alpha-D-manno-octulosonate 8-oxidase [EC:1.1.3.48] D THMIRHAM_12020 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D THMIRHAM_09720 kdsB_1; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D THMIRHAM_22030 kdsB_3; 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D THMIRHAM_05770 hypothetical protein K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D THMIRHAM_04620 kpsF; arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D THMIRHAM_17340 waaC; ADP-heptose--LPS heptosyltransferase K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D THMIRHAM_04660 gmhA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D THMIRHAM_04180 D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D THMIRHAM_04650 hldE; bifunctional protein HldE K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D THMIRHAM_17350 hldD; ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:tib01011] D THMIRHAM_05880 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D THMIRHAM_12380 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D THMIRHAM_16370 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D THMIRHAM_16550 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D THMIRHAM_16360 ddlB; D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D THMIRHAM_11460 alr1; alanine racemase 1 K01775 alr; alanine racemase [EC:5.1.1.1] D THMIRHAM_16560 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D THMIRHAM_16530 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D THMIRHAM_18720 uppP; undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D THMIRHAM_17960 putative lipid II flippase MurJ K03980 murJ; putative peptidoglycan lipid II flippase D THMIRHAM_20820 ponA; peptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D THMIRHAM_06580 pbpA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D THMIRHAM_16590 ftsI; penicillin-binding protein 3 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D THMIRHAM_06560 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D THMIRHAM_17890 lytic transglycosylase K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D THMIRHAM_00790 membrane-bound lytic murein transglycosylase C K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29] D THMIRHAM_08460 mltG; endolytic murein transglycosylase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D THMIRHAM_13230 ampD; N-acetyl-anhydromuranmyl-L-alanine amidase K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:tib01004] D THMIRHAM_08400 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D THMIRHAM_08390 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D THMIRHAM_08860 fabF_2; beta-ketoacyl-[acyl-carrier-protein] synthase II K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D THMIRHAM_20070 fabB; beta-ketoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D THMIRHAM_08430 fabF_1; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D THMIRHAM_08830 fabG_2; 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D THMIRHAM_08410 fabG_1; beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D THMIRHAM_20080 fabA; 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D THMIRHAM_12180 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D THMIRHAM_11140 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D THMIRHAM_15520 tesA; arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D THMIRHAM_10640 acsA; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D THMIRHAM_08380 plsX; phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D THMIRHAM_18670 plsY; glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D THMIRHAM_04190 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases [BR:tib01006] D THMIRHAM_09340 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D THMIRHAM_03990 ispB; octaprenyl-diphosphate synthase IspB K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D THMIRHAM_12240 uppS; isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D THMIRHAM_10130 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D THMIRHAM_22160 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] C 01007 Amino acid related enzymes [BR:tib01007] D THMIRHAM_11620 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D THMIRHAM_09910 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D THMIRHAM_20100 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D THMIRHAM_07120 trpS-2; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D THMIRHAM_13610 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D THMIRHAM_02430 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D THMIRHAM_10090 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D THMIRHAM_17940 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D THMIRHAM_06110 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D THMIRHAM_18070 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D THMIRHAM_09270 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D THMIRHAM_13940 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D THMIRHAM_15960 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D THMIRHAM_04160 glyQ; glycine--tRNA ligase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D THMIRHAM_04170 glyS; glycine--tRNA ligase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D THMIRHAM_08180 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D THMIRHAM_14400 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D THMIRHAM_15630 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D THMIRHAM_07070 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D THMIRHAM_15590 pheS; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D THMIRHAM_15580 pheT; phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D THMIRHAM_04930 aatA; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D THMIRHAM_11930 aminotransferase K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-] D THMIRHAM_11330 hisC2; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D THMIRHAM_16290 hisC1; histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D THMIRHAM_01800 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D THMIRHAM_21950 patB; cystathionine beta-lyase PatB K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D THMIRHAM_17440 argD; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D THMIRHAM_02730 ectB; diaminobutyrate--2-oxoglutarate transaminase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76] D THMIRHAM_03330 bioA; adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D THMIRHAM_14720 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D THMIRHAM_06550 cytochrome c550 K00824 dat; D-alanine transaminase [EC:2.6.1.21] D THMIRHAM_17420 ilvE; branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D THMIRHAM_00720 agxT; serine--pyruvate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D THMIRHAM_11310 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:tib00194] D THMIRHAM_18800 hypothetical protein K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D THMIRHAM_22190 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D THMIRHAM_18810 atpD; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D THMIRHAM_22200 atpD1; ATP synthase subunit beta 1 K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D THMIRHAM_22210 atpG; ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D THMIRHAM_18750 atpA1; ATP synthase subunit alpha 1 K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D THMIRHAM_22220 atpA; ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D THMIRHAM_22230 atpH; ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D THMIRHAM_22240 atpF_2; ATP synthase subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b D THMIRHAM_18770 hypothetical protein K02110 ATPF0C; F-type H+-transporting ATPase subunit c D THMIRHAM_22250 hypothetical protein K02110 ATPF0C; F-type H+-transporting ATPase subunit c D THMIRHAM_18780 atpB_1; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a D THMIRHAM_22260 atpB_2; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a D THMIRHAM_18790 F0F1 ATP synthase subunit K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:tib03000] D THMIRHAM_00310 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D THMIRHAM_03000 LysR family transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D THMIRHAM_03010 LysR family transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D THMIRHAM_21490 LysR family transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D THMIRHAM_21500 LysR family transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D THMIRHAM_00410 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D THMIRHAM_08960 fur; transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D THMIRHAM_07330 fnr; fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D THMIRHAM_16010 iscR; HTH-type transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D THMIRHAM_13790 transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D THMIRHAM_17790 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D THMIRHAM_07690 hypothetical protein K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D THMIRHAM_01630 nifA-2; Nif-specific regulatory protein K02584 nifA; Nif-specific regulatory protein D THMIRHAM_19910 modE; ModE family transcriptional regulator K02019 modE; molybdate transport system regulatory protein D THMIRHAM_18250 hypothetical protein K02019 modE; molybdate transport system regulatory protein D THMIRHAM_06330 bolA; BolA family transcriptional regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D THMIRHAM_22290 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D THMIRHAM_08990 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D THMIRHAM_18970 pyrR; bifunctional protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D THMIRHAM_18950 UPF0301 protein K07735 algH; putative transcriptional regulator D THMIRHAM_11830 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor D THMIRHAM_14050 nrdR; transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR D THMIRHAM_16630 mraZ; transcriptional regulator MraZ K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:tib03021] D THMIRHAM_03730 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D THMIRHAM_03420 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D THMIRHAM_03430 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D THMIRHAM_22050 hypothetical protein K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D THMIRHAM_18620 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D THMIRHAM_18460 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D THMIRHAM_21910 rpoH; RNA polymerase sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor D THMIRHAM_11550 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D THMIRHAM_07930 fliA; RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA D THMIRHAM_10700 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA D THMIRHAM_14000 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB D THMIRHAM_03370 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D THMIRHAM_16980 sspA; stringent starvation protein A K03599 sspA; stringent starvation protein A D THMIRHAM_16970 sspB; stringent starvation protein B K03600 sspB; stringent starvation protein B D THMIRHAM_11830 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor D THMIRHAM_09100 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D THMIRHAM_09580 greB; transcription elongation factor GreB K04760 greB; transcription elongation factor GreB D THMIRHAM_20660 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:tib03019] D THMIRHAM_08320 hypothetical protein K08300 rne; ribonuclease E [EC:3.1.26.12] D THMIRHAM_17230 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] D THMIRHAM_09420 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] D THMIRHAM_07300 vacB; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D THMIRHAM_15860 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D THMIRHAM_09180 rhlE_1; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D THMIRHAM_10350 RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D THMIRHAM_13080 rhlE_2; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D THMIRHAM_01580 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D THMIRHAM_00290 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D THMIRHAM_12010 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D THMIRHAM_10770 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D THMIRHAM_20660 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D THMIRHAM_09010 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D THMIRHAM_04050 groL1; 60 kDa chaperonin 1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D THMIRHAM_10140 hypothetical protein K03666 hfq; host factor-I protein D THMIRHAM_19520 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D THMIRHAM_19020 hypothetical protein K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D THMIRHAM_07170 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D THMIRHAM_13180 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D THMIRHAM_07100 hypothetical protein K03563 csrA; carbon storage regulator D THMIRHAM_13500 ATP-dependent RNA helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] C 03041 Spliceosome C 03011 Ribosome [BR:tib03011] D THMIRHAM_11370 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D THMIRHAM_12280 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D THMIRHAM_03550 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D THMIRHAM_03720 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D THMIRHAM_03660 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D THMIRHAM_11410 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D THMIRHAM_03450 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D THMIRHAM_03630 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D THMIRHAM_18220 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D THMIRHAM_03480 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D THMIRHAM_03710 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D THMIRHAM_03440 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D THMIRHAM_03700 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D THMIRHAM_03620 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D THMIRHAM_10760 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D THMIRHAM_06020 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D THMIRHAM_03580 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D THMIRHAM_11420 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D THMIRHAM_03530 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D THMIRHAM_18000 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D THMIRHAM_18650 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D THMIRHAM_03390 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D THMIRHAM_03520 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D THMIRHAM_03490 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D THMIRHAM_03500 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D THMIRHAM_03610 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D THMIRHAM_03640 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D THMIRHAM_11440 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D THMIRHAM_03400 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D THMIRHAM_03380 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D THMIRHAM_03410 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D THMIRHAM_18230 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D THMIRHAM_03590 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D THMIRHAM_03680 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D THMIRHAM_03560 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D THMIRHAM_03740 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D THMIRHAM_03650 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D THMIRHAM_06050 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D THMIRHAM_15600 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D THMIRHAM_04000 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D THMIRHAM_03540 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D THMIRHAM_03510 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D THMIRHAM_03600 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D THMIRHAM_04010 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D THMIRHAM_19820 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D THMIRHAM_03570 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D THMIRHAM_03670 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D THMIRHAM_20670 rpmE2; 50S ribosomal protein L31 type B K02909 RP-L31; large subunit ribosomal protein L31 D THMIRHAM_08370 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D THMIRHAM_19830 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D THMIRHAM_22490 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D THMIRHAM_15610 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D THMIRHAM_12130 hypothetical protein K02919 RP-L36; large subunit ribosomal protein L36 D THMIRHAM_04440 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 C 03009 Ribosome biogenesis [BR:tib03009] D THMIRHAM_09420 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] D THMIRHAM_10400 serine/threonine protein kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D THMIRHAM_15860 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D THMIRHAM_09430 era; GTPase Era K03595 era; GTPase D THMIRHAM_04020 obg; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-] D THMIRHAM_11830 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor D THMIRHAM_10700 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA D THMIRHAM_14000 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB D THMIRHAM_03370 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D THMIRHAM_01120 rsuA; pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D THMIRHAM_06360 rsmA; ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D THMIRHAM_02370 sun; ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D THMIRHAM_02580 16S RNA G1207 methylase RsmC K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D THMIRHAM_19960 ribosomal RNA small subunit methyltransferase D K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D THMIRHAM_18890 ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D THMIRHAM_22310 rsmG; ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D THMIRHAM_16620 rsmH; ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D THMIRHAM_16690 yraL; ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D THMIRHAM_16670 rsmJ; ribosomal RNA small subunit methyltransferase J K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] D THMIRHAM_07310 rlmB; 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D THMIRHAM_15080 rlmE; ribosomal RNA large subunit methyltransferase E K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D THMIRHAM_18010 rlmH; ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D THMIRHAM_19210 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D THMIRHAM_14480 rlmJ; ribosomal RNA large subunit methyltransferase J K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D THMIRHAM_17880 rlmL; ribosomal RNA large subunit methyltransferase K/L K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173] D THMIRHAM_15980 rlmN; dual-specificity RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D THMIRHAM_15260 rlmD; 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D THMIRHAM_08300 rluA; RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D THMIRHAM_12740 RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D THMIRHAM_11680 rluB; ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D THMIRHAM_08330 pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D THMIRHAM_13310 rluD; pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D THMIRHAM_10260 rluC; pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D THMIRHAM_06430 pseudouridine synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] D THMIRHAM_13480 rluF; pseudouridine synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] D THMIRHAM_03910 rimK; putative alpha-L-glutamate ligase K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] D THMIRHAM_06030 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM D THMIRHAM_12590 rimO; ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D THMIRHAM_12070 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor D THMIRHAM_17770 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D THMIRHAM_15470 prmB; 50S ribosomal protein L3 glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] D THMIRHAM_10790 cupin K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] D THMIRHAM_08320 hypothetical protein K08300 rne; ribonuclease E [EC:3.1.26.12] D THMIRHAM_17230 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] D THMIRHAM_18960 putative pre-16S rRNA nuclease K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D THMIRHAM_09930 dbpA; ATP-dependent RNA helicase K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] D THMIRHAM_01580 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D THMIRHAM_19440 srmB; ATP-dependent RNA helicase SrmB K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7] D THMIRHAM_15890 rsgA; putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D THMIRHAM_15930 engA; GTPase Der K03977 engA; GTPase D THMIRHAM_14470 ribosome biogenesis GTPase A K14540 rbgA; ribosome biogenesis GTPase A D THMIRHAM_10150 hflX; GTPase HflX K03665 hflX; GTPase D THMIRHAM_00160 tsaC; threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D THMIRHAM_22060 spoT; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D THMIRHAM_10720 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D THMIRHAM_10690 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP D THMIRHAM_18020 rsfS; ribosomal silencing factor RsfS K09710 ybeB; ribosome-associated protein D THMIRHAM_18110 ybeY; endoribonuclease YbeY K07042 ybeY; probable rRNA maturation factor D THMIRHAM_15090 RNA-binding protein K07574 yhbY; RNA-binding protein D THMIRHAM_11770 yjgA; UPF0307 protein YjgA K09889 yjgA; ribosome-associated protein D THMIRHAM_05730 yfiA-2; ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor D THMIRHAM_04460 ychF; ribosome-binding ATPase YchF K06942 ychF; ribosome-binding ATPase D THMIRHAM_08360 hypothetical protein K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:tib03016] D THMIRHAM_02830 cca; multifunctional CCA protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D THMIRHAM_11620 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D THMIRHAM_14400 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D THMIRHAM_17940 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D THMIRHAM_18070 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D THMIRHAM_10090 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D THMIRHAM_09910 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D THMIRHAM_02430 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D THMIRHAM_09270 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D THMIRHAM_13940 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D THMIRHAM_07070 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D THMIRHAM_15630 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D THMIRHAM_08180 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D THMIRHAM_13610 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D THMIRHAM_06110 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D THMIRHAM_15960 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D THMIRHAM_15590 pheS; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D THMIRHAM_15580 pheT; phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D THMIRHAM_20100 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D THMIRHAM_07120 trpS-2; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D THMIRHAM_02100 dtd; D-aminoacyl-tRNA deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D THMIRHAM_01910 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D THMIRHAM_20740 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D THMIRHAM_15180 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D THMIRHAM_10730 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D THMIRHAM_00160 tsaC; threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D THMIRHAM_10130 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D THMIRHAM_22450 mnmE; tRNA modification GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D THMIRHAM_22320 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D THMIRHAM_10420 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D THMIRHAM_05470 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D THMIRHAM_18340 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D THMIRHAM_22480 hypothetical protein K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D THMIRHAM_16210 rnt; ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-] D THMIRHAM_14070 yjjK; energy-dependent translational throttle protein EttA K06020 ettA; energy-dependent translational throttle protein EttA D THMIRHAM_04160 glyQ; glycine--tRNA ligase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D THMIRHAM_04170 glyS; glycine--tRNA ligase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D THMIRHAM_06820 tadA; tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D THMIRHAM_11600 dusA; tRNA-dihydrouridine(20/20a) synthase K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-] D THMIRHAM_17780 dusB; tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D THMIRHAM_18130 miaB; tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D THMIRHAM_00780 cmoA; carboxy-S-adenosyl-L-methionine synthase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] D THMIRHAM_00770 cmoB; tRNA U34 carboxymethyltransferase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-] D THMIRHAM_00820 cmoM; tRNA 5-carboxymethoxyuridine methyltransferase K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-] D THMIRHAM_02220 trmA; tRNA/tmRNA (uracil-C(5))-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35] D THMIRHAM_06040 trmD; tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D THMIRHAM_16030 trmJ; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200] D THMIRHAM_20120 trmL; tRNA (cytidine(34)-2'-O)-methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D THMIRHAM_03340 truC; tRNA pseudouridine synthase C K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26] D THMIRHAM_08300 rluA; RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D THMIRHAM_12740 RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D THMIRHAM_10250 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D THMIRHAM_02260 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D THMIRHAM_16000 iron-binding protein IscA K13628 iscA; iron-sulfur cluster assembly protein D THMIRHAM_09310 folate-binding protein YgfZ K06980 ygfZ; tRNA-modifying protein YgfZ D THMIRHAM_05650 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D THMIRHAM_13830 queC; 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D THMIRHAM_09330 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D THMIRHAM_15250 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D THMIRHAM_22360 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D THMIRHAM_14290 queG; epoxyqueuosine reductase K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D THMIRHAM_10430 selU; tRNA 2-selenouridine synthase K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3] D THMIRHAM_05660 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D THMIRHAM_07270 thiI; tRNA sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D THMIRHAM_18660 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D THMIRHAM_14280 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D THMIRHAM_03760 tcdA; tRNA threonylcarbamoyladenosine dehydratase K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase D THMIRHAM_07300 vacB; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D THMIRHAM_10770 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:tib03012] D THMIRHAM_10710 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D THMIRHAM_15620 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D THMIRHAM_11070 ABC transporter ATP-binding protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D THMIRHAM_12270 tsf; elongation factor Ts K02357 tsf; elongation factor Ts D THMIRHAM_03350 tufB_1; elongation factor Tu K02358 tuf; elongation factor Tu D THMIRHAM_03470 tufB_2; elongation factor Tu K02358 tuf; elongation factor Tu D THMIRHAM_03460 fusA; elongation factor G K02355 fusA; elongation factor G D THMIRHAM_04400 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D THMIRHAM_12250 frr; ribosome-recycling factor K02838 frr; ribosome recycling factor D THMIRHAM_04390 prmC; release factor glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D THMIRHAM_04450 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D THMIRHAM_10520 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D THMIRHAM_17000 efp; elongation factor P K02356 efp; elongation factor P D THMIRHAM_20480 elongation factor P-like protein K02356 efp; elongation factor P D THMIRHAM_16990 epmA; elongation factor P--(R)-beta-lysine ligase K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-] D THMIRHAM_17010 yjeK; hypothetical protein K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-] D THMIRHAM_14730 hypothetical protein K09906 epmC; elongation factor P hydroxylase [EC:1.14.-.-] D THMIRHAM_09260 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 D THMIRHAM_05700 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3 D THMIRHAM_14630 peptidyl-tRNA hydrolase K15034 yaeJ; ribosome-associated protein C 03110 Chaperones and folding catalysts [BR:tib03110] D THMIRHAM_10510 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA D THMIRHAM_17840 clpB; chaperone protein ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D THMIRHAM_11110 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D THMIRHAM_04530 hslU; ATP-dependent protease ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D THMIRHAM_06880 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG D THMIRHAM_09010 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D THMIRHAM_04050 groL1; 60 kDa chaperonin 1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D THMIRHAM_09020 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D THMIRHAM_20420 cbpA; curved DNA-binding protein K05516 cbpA; curved DNA-binding protein D THMIRHAM_06510 hslO; 33 kDa chaperonin K04083 hslO; molecular chaperone Hsp33 D THMIRHAM_09000 grpE; protein GrpE K03687 GRPE; molecular chaperone GrpE D THMIRHAM_00100 hslR; heat-shock protein 15 K04762 hslR; ribosome-associated heat shock protein Hsp15 D THMIRHAM_04040 groS; 10 kDa chaperonin K04078 groES; chaperonin GroES D THMIRHAM_09390 serine peptidase K04771 degP; serine protease Do [EC:3.4.21.107] D THMIRHAM_15070 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D THMIRHAM_18780 atpB_1; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a D THMIRHAM_22260 atpB_2; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a D THMIRHAM_20140 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB D THMIRHAM_14670 transporter K09796 pccA; periplasmic copper chaperone A D THMIRHAM_12680 chaperone TorD K23349 dmsD; putative dimethyl sulfoxide reductase chaperone D THMIRHAM_13620 ppiB; peptidyl-prolyl cis-trans isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D THMIRHAM_13630 peptidyl-prolyl cis-trans isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D THMIRHAM_10220 peptidylprolyl isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D THMIRHAM_06970 fklB; peptidyl-prolyl cis-trans isomerase K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8] D THMIRHAM_08080 mip; peptidyl-prolyl cis-trans isomerase Mip K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8] D THMIRHAM_13370 fkpB; peptidyl-prolyl cis-trans isomerase K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8] D THMIRHAM_12640 slyD_1; peptidyl-prolyl cis-trans isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D THMIRHAM_12650 hypothetical protein K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D THMIRHAM_13540 slyD_2; peptidyl-prolyl cis-trans isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D THMIRHAM_09890 ppiC-2; peptidylprolyl isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D THMIRHAM_13450 peptidylprolyl isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D THMIRHAM_16900 peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D THMIRHAM_06380 surA; chaperone SurA K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] D THMIRHAM_09210 trxC_2; putative thioredoxin-2 K03671 TXN; thioredoxin D THMIRHAM_20650 trxA; thioredoxin K03671 TXN; thioredoxin D THMIRHAM_01030 trxC_1; thiol disulfide reductase thioredoxin K03672 trxC; thioredoxin 2 [EC:1.8.1.8] D THMIRHAM_20150 glutaredoxin 3 K03676 grxC; glutaredoxin 3 D THMIRHAM_16220 glutaredoxin K07390 grxD; monothiol glutaredoxin D THMIRHAM_06070 dsbC; thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D THMIRHAM_17730 dsbD; thiol:disulfide interchange protein DsbD K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16] C 04131 Membrane trafficking [BR:tib04131] D THMIRHAM_15990 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D THMIRHAM_02870 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D THMIRHAM_02890 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D THMIRHAM_06880 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG C 04121 Ubiquitin system C 03051 Proteasome [BR:tib03051] D THMIRHAM_06880 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:tib03032] D THMIRHAM_13560 rnhA_2; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D THMIRHAM_11130 hup; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D THMIRHAM_15570 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D THMIRHAM_11380 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta D THMIRHAM_00010 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D THMIRHAM_11450 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D THMIRHAM_18630 hypothetical protein K02316 dnaG; DNA primase [EC:2.7.7.101] D THMIRHAM_03810 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D THMIRHAM_10590 dnaE; DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D THMIRHAM_00020 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D THMIRHAM_05010 hypothetical protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D THMIRHAM_18050 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D THMIRHAM_08480 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D THMIRHAM_10680 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D THMIRHAM_13550 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D THMIRHAM_16810 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D THMIRHAM_12150 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D THMIRHAM_00180 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D THMIRHAM_11780 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D THMIRHAM_14550 DnaA regulatory inactivator Hda K10763 hda; DnaA-homolog protein D THMIRHAM_11300 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D THMIRHAM_00060 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D THMIRHAM_04350 parC; DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D THMIRHAM_04280 parE; DNA topoisomerase 4 subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D THMIRHAM_02420 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:tib03036] D THMIRHAM_09420 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] D THMIRHAM_11130 hup; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D THMIRHAM_15570 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D THMIRHAM_11380 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta D THMIRHAM_20420 cbpA; curved DNA-binding protein K05516 cbpA; curved DNA-binding protein D THMIRHAM_00010 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D THMIRHAM_17790 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D THMIRHAM_10140 hypothetical protein K03666 hfq; host factor-I protein D THMIRHAM_00410 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D THMIRHAM_16340 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D THMIRHAM_16590 ftsI; penicillin-binding protein 3 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D THMIRHAM_08100 ftsK; DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D THMIRHAM_16600 hypothetical protein K03586 ftsL; cell division protein FtsL D THMIRHAM_16540 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW D THMIRHAM_16610 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D THMIRHAM_06610 mreB; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D THMIRHAM_06600 hypothetical protein K03570 mreC; rod shape-determining protein MreC D THMIRHAM_06570 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D THMIRHAM_22300 cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein D THMIRHAM_22290 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D THMIRHAM_04350 parC; DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D THMIRHAM_04280 parE; DNA topoisomerase 4 subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D THMIRHAM_22320 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D THMIRHAM_22310 rsmG; ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D THMIRHAM_04560 xerC; tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC D THMIRHAM_06060 xerD; tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD D THMIRHAM_10110 iron-sulfur cluster carrier protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D THMIRHAM_12660 hypothetical protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D THMIRHAM_00230 engB; putative GTP-binding protein EngB K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:tib03400] D THMIRHAM_08190 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D THMIRHAM_21220 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D THMIRHAM_04260 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D THMIRHAM_20730 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D THMIRHAM_10020 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D THMIRHAM_19650 dut_2; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D THMIRHAM_19860 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D THMIRHAM_01210 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D THMIRHAM_19560 nfo; putative endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D THMIRHAM_11890 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D THMIRHAM_11780 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D THMIRHAM_00180 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D THMIRHAM_03780 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A D THMIRHAM_04940 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B D THMIRHAM_10850 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C D THMIRHAM_20640 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D THMIRHAM_03420 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D THMIRHAM_03430 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D THMIRHAM_03730 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D THMIRHAM_22050 hypothetical protein K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D THMIRHAM_11010 mfd; transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D THMIRHAM_07030 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D THMIRHAM_10120 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D THMIRHAM_11580 hypothetical protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D THMIRHAM_10590 dnaE; DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D THMIRHAM_00020 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D THMIRHAM_05010 hypothetical protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D THMIRHAM_18050 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D THMIRHAM_08480 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D THMIRHAM_10680 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D THMIRHAM_13550 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D THMIRHAM_16810 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D THMIRHAM_03810 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D THMIRHAM_07050 recA; protein RecA K03553 recA; recombination protein RecA D THMIRHAM_13910 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D THMIRHAM_13900 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D THMIRHAM_13920 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D THMIRHAM_01740 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D THMIRHAM_05950 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D THMIRHAM_00040 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D THMIRHAM_22110 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D THMIRHAM_09440 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D THMIRHAM_17460 recR; recombination protein RecR K06187 recR; recombination protein RecR D THMIRHAM_08970 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D THMIRHAM_11300 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D THMIRHAM_00060 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D THMIRHAM_02420 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D THMIRHAM_11130 hup; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D THMIRHAM_17790 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D THMIRHAM_15570 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D THMIRHAM_11380 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta D THMIRHAM_00290 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D THMIRHAM_19260 umuC; DNA polymerase V subunit UmuC K03502 umuC; DNA polymerase V D THMIRHAM_19240 umuD; DNA polymerase V K03503 umuD; DNA polymerase V [EC:3.4.21.-] D THMIRHAM_11740 hypothetical protein K01356 lexA; repressor LexA [EC:3.4.21.88] D THMIRHAM_02570 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D THMIRHAM_12120 yoaA; ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D THMIRHAM_18320 nrdA; ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D THMIRHAM_18420 nrdB; ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:tib03029] D THMIRHAM_05930 petB; cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D THMIRHAM_10710 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D THMIRHAM_15620 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D THMIRHAM_12270 tsf; elongation factor Ts K02357 tsf; elongation factor Ts D THMIRHAM_03350 tufB_1; elongation factor Tu K02358 tuf; elongation factor Tu D THMIRHAM_03470 tufB_2; elongation factor Tu K02358 tuf; elongation factor Tu D THMIRHAM_03460 fusA; elongation factor G K02355 fusA; elongation factor G D THMIRHAM_09430 era; GTPase Era K03595 era; GTPase D THMIRHAM_20100 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D THMIRHAM_18070 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D THMIRHAM_13940 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D THMIRHAM_02430 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D THMIRHAM_06630 gatA; glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D THMIRHAM_06640 gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D THMIRHAM_06620 gatC; glutamyl-tRNA(Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D THMIRHAM_00810 hypothetical protein K01173 ENDOG; endonuclease G, mitochondrial D THMIRHAM_03810 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D THMIRHAM_12210 opr86; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family D THMIRHAM_09010 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D THMIRHAM_09000 grpE; protein GrpE K03687 GRPE; molecular chaperone GrpE D THMIRHAM_04050 groL1; 60 kDa chaperonin 1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D THMIRHAM_04040 groS; 10 kDa chaperonin K04078 groES; chaperonin GroES D THMIRHAM_09020 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D THMIRHAM_13510 Zn-dependent hydrolase K17725 ETHE1; sulfur dioxygenase [EC:1.13.11.18] D THMIRHAM_16220 glutaredoxin K07390 grxD; monothiol glutaredoxin D THMIRHAM_10110 iron-sulfur cluster carrier protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D THMIRHAM_12660 hypothetical protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D THMIRHAM_22470 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D THMIRHAM_06880 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:tib02000] D THMIRHAM_17390 msbA; lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D THMIRHAM_02520 ABC transporter K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D THMIRHAM_14830 ABC transporter K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D THMIRHAM_08500 ABC transporter ATP-binding protein/permease K06148 ABCC-BAC; ATP-binding cassette, subfamily C, bacterial D THMIRHAM_18370 ABC transporter ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein D THMIRHAM_19900 modA_2; molybdate-binding periplasmic protein ModA K02020 modA; molybdate transport system substrate-binding protein D THMIRHAM_19890 modB; molybdenum transporter ModB K02018 modB; molybdate transport system permease protein D THMIRHAM_19880 modC; molybdenum import ATP-binding protein ModC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D THMIRHAM_21700 potF; putrescine-binding periplasmic protein K11073 potF; putrescine transport system substrate-binding protein D THMIRHAM_21730 putrescine ABC transporter permease PotI K11074 potI; putrescine transport system permease protein D THMIRHAM_21720 putrescine ABC transporter permease K11075 potH; putrescine transport system permease protein D THMIRHAM_21710 polyamine-transporting ATPase K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D THMIRHAM_01670 hypothetical protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D THMIRHAM_08520 ABC transporter substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D THMIRHAM_01660 ABC transporter permease K02050 ABC.SN.P; NitT/TauT family transport system permease protein D THMIRHAM_08630 hypothetical protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein D THMIRHAM_01680 hypothetical protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D THMIRHAM_08620 ABC transporter K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D THMIRHAM_20620 iron export ABC transporter permease subunit FetB K02069 STAR2; UDP-glucose/iron transport system permease protein D THMIRHAM_20630 ybbL; iron ABC transporter ATP-binding protein FetA K02068 STAR1; UDP-glucose/iron transport system ATP-binding protein D THMIRHAM_05820 mlaD; putative phospholipid ABC transporter-binding protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D THMIRHAM_05810 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D THMIRHAM_05800 yrbF; ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D THMIRHAM_05830 hypothetical protein K07323 mlaC; phospholipid transport system substrate-binding protein D THMIRHAM_05840 hypothetical protein K07122 mlaB; phospholipid transport system transporter-binding protein D THMIRHAM_06280 pstS; phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D THMIRHAM_06210 phosphate ABC transporter permease K02037 pstC; phosphate transport system permease protein D THMIRHAM_06220 pstA; phosphate transport system permease protein PstA K02038 pstA; phosphate transport system permease protein D THMIRHAM_06230 pstB; phosphate import ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D THMIRHAM_11150 hbpA; ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D THMIRHAM_12460 peptide-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D THMIRHAM_11160 oppB; peptide ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D THMIRHAM_12430 peptide ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D THMIRHAM_11170 oppC; peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D THMIRHAM_12420 cytochrome c550 K02034 ABC.PE.P1; peptide/nickel transport system permease protein D THMIRHAM_11180 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D THMIRHAM_18480 hemin ABC transporter permease K25133 hmuU; heme transport system permease protein D THMIRHAM_16460 znuB; membrane protein K09816 znuB; zinc transport system permease protein D THMIRHAM_16450 znuC; zinc import ATP-binding protein ZnuC K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D THMIRHAM_15270 mntA; manganese-binding lipoprotein MntA K11707 troA; manganese/zinc/iron transport system substrate-binding protein D THMIRHAM_15290 mntC; manganese transport system membrane protein MntC K11708 troC; manganese/zinc/iron transport system permease protein D THMIRHAM_15300 mntD; manganese transport system membrane protein MntD K11709 troD; manganese/zinc/iron transport system permease protein D THMIRHAM_15280 mntB; manganese transport system ATP-binding protein MntB K11710 troB; manganese/zinc/iron transport system ATP- binding protein [EC:7.2.2.5] D THMIRHAM_05220 ABC transporter ATP-binding protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12] D THMIRHAM_05040 LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein D THMIRHAM_05740 ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D THMIRHAM_11050 lipoprotein releasing system protein K09808 lolC_E; lipoprotein-releasing system permease protein D THMIRHAM_11060 lolD; lipoprotein-releasing system ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D THMIRHAM_05110 ybhS; transport permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein D THMIRHAM_05860 transport permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein D THMIRHAM_05100 ABC drugE1 family efflux system ATPase K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D THMIRHAM_05850 ABC transporter ATP-binding subunit K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D THMIRHAM_01340 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D THMIRHAM_09530 permease K02004 ABC.CD.P; putative ABC transport system permease protein D THMIRHAM_01350 macrolide ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D THMIRHAM_09540 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D THMIRHAM_15530 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D THMIRHAM_16410 sufC; ABC transporter ATP-binding protein K09013 sufC; Fe-S cluster assembly ATP-binding protein D THMIRHAM_11490 norM; putative multidrug resistance protein NorM K26939 norM; MATE family, multidrug efflux pump D THMIRHAM_15820 MFS transporter K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter D THMIRHAM_15390 MFS metabolite transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter D THMIRHAM_00510 MFS transporter K25223 arsJ; MFS transporter, APGE family, 1-arseno-3-phosphoglycerate exporter D THMIRHAM_06300 hypothetical protein K08714 VGSC; voltage-gated sodium channel D THMIRHAM_06150 ammonium transporter channel family protein K03320 amt; ammonium transporter, Amt family D THMIRHAM_09630 ammonium transporter K03320 amt; ammonium transporter, Amt family D THMIRHAM_12530 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D THMIRHAM_16980 sspA; stringent starvation protein A K03599 sspA; stringent starvation protein A D THMIRHAM_00630 VWA domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog D THMIRHAM_19610 mechanosensitive ion channel protein K03442 mscS; small conductance mechanosensitive channel D THMIRHAM_12390 mechanosensitive ion channel protein MscS K16052 ynaI; MscS family membrane protein D THMIRHAM_03890 magnesium transporter MgtE K06213 mgtE; magnesium transporter D THMIRHAM_05720 magnesium transporter MgtE K06213 mgtE; magnesium transporter D THMIRHAM_07800 motA_2; flagellar motor protein MotA K02556 motA; chemotaxis protein MotA D THMIRHAM_04360 flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D THMIRHAM_04200 motA_1; motility protein A K02556 motA; chemotaxis protein MotA D THMIRHAM_07210 flagellar motor protein PomA K02556 motA; chemotaxis protein MotA D THMIRHAM_07810 hypothetical protein K02557 motB; chemotaxis protein MotB D THMIRHAM_04370 motD; flagellar motor protein MotD K02557 motB; chemotaxis protein MotB D THMIRHAM_06750 exbB; biopolymer transport protein ExbB K03561 exbB; biopolymer transport protein ExbB D THMIRHAM_13890 Tol-Pal system subunit TolQ K03562 tolQ; biopolymer transport protein TolQ D THMIRHAM_13880 tolR; protein TolR K03560 tolR; biopolymer transport protein TolR D THMIRHAM_03310 zinc transporter ZntB K16074 zntB; zinc transporter D THMIRHAM_08130 crcB; putative fluoride ion transporter CrcB K06199 crcB; fluoride exporter D THMIRHAM_03880 membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D THMIRHAM_05990 membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D THMIRHAM_20440 ligand-gated channel K02014 TC.FEV.OM; iron complex outermembrane recepter protein D THMIRHAM_02490 channel protein TolC K12543 lapE; outer membrane protein, adhesin transport system D THMIRHAM_12210 opr86; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family D THMIRHAM_15940 hypothetical protein K17713 bamB; outer membrane protein assembly factor BamB D THMIRHAM_14150 hypothetical protein K07287 bamC; outer membrane protein assembly factor BamC D THMIRHAM_13320 bamD; outer membrane protein assembly factor BamD K05807 bamD; outer membrane protein assembly factor BamD D THMIRHAM_18100 magnesium transporter K06189 corC; hemolysin (HlyC) family protein D THMIRHAM_01830 zitB; zinc transporter ZitB K16264 czcD; cobalt-zinc-cadmium efflux system protein D THMIRHAM_00030 fieF; cation-efflux pump FieF K13283 fieF; ferrous-iron efflux pump FieF D THMIRHAM_03120 cation efflux system protein K15726 czcA; heavy metal efflux system protein D THMIRHAM_00850 multidrug transporter K18138 acrB; multidrug efflux pump D THMIRHAM_03940 multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump D THMIRHAM_15780 transporter K03304 tehA; tellurite resistance protein D THMIRHAM_05780 sodium:calcium antiporter K07301 yrbG; cation:H+ antiporter D THMIRHAM_11250 cation transporter K07301 yrbG; cation:H+ antiporter D THMIRHAM_10660 actP; cation/acetate symporter ActP K14393 actP; cation/acetate symporter D THMIRHAM_00340 nhaA; Na(+)/H(+) antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family D THMIRHAM_20500 hypothetical protein K03316 nhaP; Na+:H+ antiporter D THMIRHAM_13250 kefB; potassium transporter K03455 KEA1_2_3; K+:H+ antiporter D THMIRHAM_02320 Trk system potassium uptake protein K03498 trkH; trk/ktr system potassium uptake protein D THMIRHAM_02330 trkA_1; Trk system potassium transport protein TrkA K03499 trkA; trk/ktr system potassium uptake protein D THMIRHAM_15360 sodium-independent anion transporter K03321 TC.SULP; sulfate permease, SulP family D THMIRHAM_00450 Na/Pi cotransporter K03324 yjbB; phosphate:Na+ symporter D THMIRHAM_17960 putative lipid II flippase MurJ K03980 murJ; putative peptidoglycan lipid II flippase D THMIRHAM_20230 membrane protein K13936 mdcF; malonate transporter and related proteins D THMIRHAM_06310 membrane protein K22736 VIT; vacuolar iron transporter family protein D THMIRHAM_09160 membrane protein K22736 VIT; vacuolar iron transporter family protein D THMIRHAM_16540 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW D THMIRHAM_07340 pal_1; peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein D THMIRHAM_13870 hypothetical protein K03646 tolA; colicin import membrane protein D THMIRHAM_13860 tolB; protein TolB K03641 tolB; TolB protein D THMIRHAM_02510 HlyD family type I secretion periplasmic adaptor subunit K12542 lapC; membrane fusion protein, adhesin transport system D THMIRHAM_14840 HlyD family type I secretion periplasmic adaptor subunit K12542 lapC; membrane fusion protein, adhesin transport system D THMIRHAM_15690 pnuT; nicotinamide mononucleotide transporter K03811 pnuC; nicotinamide mononucleotide transporter D THMIRHAM_19100 hypothetical protein K04758 feoA; ferrous iron transport protein A D THMIRHAM_19110 ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B C 02044 Secretion system [BR:tib02044] D THMIRHAM_02520 ABC transporter K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D THMIRHAM_14830 ABC transporter K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D THMIRHAM_02510 HlyD family type I secretion periplasmic adaptor subunit K12542 lapC; membrane fusion protein, adhesin transport system D THMIRHAM_14840 HlyD family type I secretion periplasmic adaptor subunit K12542 lapC; membrane fusion protein, adhesin transport system D THMIRHAM_02490 channel protein TolC K12543 lapE; outer membrane protein, adhesin transport system D THMIRHAM_21150 xcpQ; type II secretion system protein GspD K02453 gspD; general secretion pathway protein D D THMIRHAM_17180 type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D THMIRHAM_21140 xcpR; type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D THMIRHAM_21130 xcpS; type II secretion system protein GspF K02455 gspF; general secretion pathway protein F D THMIRHAM_21120 gspG; type II secretion system protein GspG K02456 gspG; general secretion pathway protein G D THMIRHAM_13960 pilD; type 4 prepilin-like proteins leader peptide-processing enzyme K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D THMIRHAM_17170 pilC; type II secretion system protein F K02653 pilC; type IV pilus assembly protein PilC D THMIRHAM_04990 pilT; twitching mobility protein K02669 pilT; twitching motility protein PilT D THMIRHAM_04980 twitching motility protein PilT K02670 pilU; twitching motility protein PilU D THMIRHAM_17530 type II secretion system protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D THMIRHAM_19070 hypothetical protein K02221 yggT; YggT family protein D THMIRHAM_04900 hypothetical protein K02237 comEA; competence protein ComEA D THMIRHAM_07900 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D THMIRHAM_07890 flhB; flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D THMIRHAM_07980 hypothetical protein K04061 flhB2; flagellar biosynthesis protein D THMIRHAM_07730 fliF; flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF D THMIRHAM_07760 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D THMIRHAM_07840 hypothetical protein K02417 fliN; flagellar motor switch protein FliN D THMIRHAM_07850 flagellar protein K02418 fliO; flagellar protein FliO/FliZ D THMIRHAM_07860 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D THMIRHAM_07870 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D THMIRHAM_07880 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D THMIRHAM_06070 dsbC; thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D THMIRHAM_16310 secA; protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D THMIRHAM_20140 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB D THMIRHAM_05680 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D THMIRHAM_03360 secE; protein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D THMIRHAM_05690 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D THMIRHAM_15030 secG; protein-export membrane protein SecG K03075 secG; preprotein translocase subunit SecG D THMIRHAM_03690 secY; protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D THMIRHAM_06010 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D THMIRHAM_20040 ftsY; signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor D THMIRHAM_05670 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D THMIRHAM_22470 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D THMIRHAM_01900 tatA; Sec-independent protein translocase protein TatA K03116 tatA; sec-independent protein translocase protein TatA D THMIRHAM_01880 hypothetical protein K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:tib02042] D THMIRHAM_03880 membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D THMIRHAM_05990 membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family C 02022 Two-component system [BR:tib02022] D THMIRHAM_06260 phoR; PAS domain-containing sensor histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D THMIRHAM_06250 phoB; DNA-binding response regulator K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D THMIRHAM_13020 DNA-binding response regulator K02483 K02483; two-component system, OmpR family, response regulator D THMIRHAM_11530 DNA-binding response regulator K02483 K02483; two-component system, OmpR family, response regulator D THMIRHAM_13780 ntrB; PAS domain-containing sensor histidine kinase K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D THMIRHAM_13770 ntrC; sigma-54-dependent Fis family transcriptional regulator K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D THMIRHAM_02350 two-component sensor histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D THMIRHAM_02340 ntrX; sigma-54-dependent Fis family transcriptional regulator K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX D THMIRHAM_06840 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D THMIRHAM_07960 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D THMIRHAM_00380 hypothetical protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D THMIRHAM_07940 cheY_1; response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D THMIRHAM_08000 cheY_2; Fis family transcriptional regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D THMIRHAM_10210 Fis family transcriptional regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D THMIRHAM_08040 cheB1; chemotaxis response regulator protein-glutamate methylesterase of group 1 operon K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D THMIRHAM_07450 chemotaxis protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D THMIRHAM_12140 chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D THMIRHAM_07700 fleS; PAS domain-containing sensor histidine kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3] D THMIRHAM_07710 fleR; sigma-54-dependent Fis family transcriptional regulator K10943 flrC; two-component system, response regulator FlrC D THMIRHAM_08210 DNA-binding response regulator K15012 regA; two-component system, response regulator RegA D THMIRHAM_10880 nasT; histidine kinase K07183 nasT; two-component system, response regulator / RNA-binding antiterminator C 02035 Bacterial motility proteins [BR:tib02035] D THMIRHAM_06840 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D THMIRHAM_07960 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D THMIRHAM_08010 cheW; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D THMIRHAM_07970 cheW-2; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D THMIRHAM_09320 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D THMIRHAM_06830 cheD1; putative chemoreceptor glutamine deamidase CheD 1 K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D THMIRHAM_08030 cheR; chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D THMIRHAM_08040 cheB1; chemotaxis response regulator protein-glutamate methylesterase of group 1 operon K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D THMIRHAM_00380 hypothetical protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D THMIRHAM_07940 cheY_1; response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D THMIRHAM_08000 cheY_2; Fis family transcriptional regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D THMIRHAM_10210 Fis family transcriptional regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D THMIRHAM_07450 chemotaxis protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D THMIRHAM_12140 chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D THMIRHAM_22090 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D THMIRHAM_08050 mcp; chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D THMIRHAM_07760 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D THMIRHAM_07850 flagellar protein K02418 fliO; flagellar protein FliO/FliZ D THMIRHAM_07860 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D THMIRHAM_07870 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D THMIRHAM_07880 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D THMIRHAM_07900 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D THMIRHAM_07890 flhB; flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D THMIRHAM_07740 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D THMIRHAM_07830 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D THMIRHAM_07840 hypothetical protein K02417 fliN; flagellar motor switch protein FliN D THMIRHAM_07730 fliF; flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF D THMIRHAM_07550 flgI; flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI D THMIRHAM_07530 flgH; flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH D THMIRHAM_07820 hypothetical protein K02415 fliL; flagellar protein FliL D THMIRHAM_07720 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D THMIRHAM_07470 flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D THMIRHAM_07480 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D THMIRHAM_07510 flgF; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D THMIRHAM_07520 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D THMIRHAM_07390 hypothetical protein K09860 flgP; outer membrane protein FlgP D THMIRHAM_07620 fliC_2; flagellin K02406 fliC; flagellin D THMIRHAM_07630 fliC_3; flagellin K02406 fliC; flagellin D THMIRHAM_21890 hypothetical protein K02422 fliS; flagellar secretion chaperone FliS D THMIRHAM_07930 fliA; RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA D THMIRHAM_07800 motA_2; flagellar motor protein MotA K02556 motA; chemotaxis protein MotA D THMIRHAM_04360 flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D THMIRHAM_04200 motA_1; motility protein A K02556 motA; chemotaxis protein MotA D THMIRHAM_07210 flagellar motor protein PomA K02556 motA; chemotaxis protein MotA D THMIRHAM_07810 hypothetical protein K02557 motB; chemotaxis protein MotB D THMIRHAM_04370 motD; flagellar motor protein MotD K02557 motB; chemotaxis protein MotB D THMIRHAM_07690 hypothetical protein K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D THMIRHAM_07700 fleS; PAS domain-containing sensor histidine kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3] D THMIRHAM_07710 fleR; sigma-54-dependent Fis family transcriptional regulator K10943 flrC; two-component system, response regulator FlrC D THMIRHAM_07910 hypothetical protein K02404 flhF; flagellar biosynthesis protein FlhF D THMIRHAM_07920 site-determining protein K04562 flhG; flagellar biosynthesis protein FlhG D THMIRHAM_04990 pilT; twitching mobility protein K02669 pilT; twitching motility protein PilT D THMIRHAM_04980 twitching motility protein PilT K02670 pilU; twitching motility protein PilU D THMIRHAM_17170 pilC; type II secretion system protein F K02653 pilC; type IV pilus assembly protein PilC D THMIRHAM_13960 pilD; type 4 prepilin-like proteins leader peptide-processing enzyme K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D THMIRHAM_17530 type II secretion system protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:tib04812] D THMIRHAM_06610 mreB; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D THMIRHAM_16610 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D THMIRHAM_16340 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D THMIRHAM_22300 cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein D THMIRHAM_22290 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:tib04147] D THMIRHAM_06880 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG D THMIRHAM_12010 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D THMIRHAM_02870 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D THMIRHAM_02880 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D THMIRHAM_02890 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D THMIRHAM_09350 ahpC; peroxiredoxin K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D THMIRHAM_04050 groL1; 60 kDa chaperonin 1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D THMIRHAM_09010 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D THMIRHAM_05070 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D THMIRHAM_06800 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D THMIRHAM_03350 tufB_1; elongation factor Tu K02358 tuf; elongation factor Tu D THMIRHAM_03470 tufB_2; elongation factor Tu K02358 tuf; elongation factor Tu D THMIRHAM_01910 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D THMIRHAM_20840 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D THMIRHAM_01100 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D THMIRHAM_01130 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D THMIRHAM_13690 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D THMIRHAM_07260 fbp; fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D THMIRHAM_04710 glgB; 1,4-alpha-glucan branching enzyme GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D THMIRHAM_06200 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D THMIRHAM_01470 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D THMIRHAM_15880 hypothetical protein K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D THMIRHAM_17800 purH; bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D THMIRHAM_15870 peptidase K06013 STE24; STE24 endopeptidase [EC:3.4.24.84] D THMIRHAM_07290 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D THMIRHAM_13150 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D THMIRHAM_21780 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D THMIRHAM_15040 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 02048 Prokaryotic defense system [BR:tib02048] D THMIRHAM_05540 type I restriction-modification system endonuclease K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D THMIRHAM_05550 DNA methyltransferase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D THMIRHAM_16610 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D THMIRHAM_06610 mreB; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D THMIRHAM_04350 parC; DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D THMIRHAM_04280 parE; DNA topoisomerase 4 subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D THMIRHAM_11620 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes [BR:tib01504] D THMIRHAM_00850 multidrug transporter K18138 acrB; multidrug efflux pump D THMIRHAM_03940 multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:tib03100] D THMIRHAM_t00330 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D THMIRHAM_t00400 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D THMIRHAM_t00450 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D THMIRHAM_t00270 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D THMIRHAM_t00200 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D THMIRHAM_t00220 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D THMIRHAM_t00240 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D THMIRHAM_t00260 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D THMIRHAM_t00160 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D THMIRHAM_t00250 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D THMIRHAM_t00340 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D THMIRHAM_t00410 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D THMIRHAM_t00460 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D THMIRHAM_t00310 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D THMIRHAM_t00090 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D THMIRHAM_t00280 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D THMIRHAM_t00290 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D THMIRHAM_t00300 tRNA-Met K14230 tRNA-Met; tRNA Met D THMIRHAM_t00370 tRNA-Met K14230 tRNA-Met; tRNA Met D THMIRHAM_t00100 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D THMIRHAM_t00040 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D THMIRHAM_t00010 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D THMIRHAM_t00080 tRNA-Val K14237 tRNA-Val; tRNA Val # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D THMIRHAM_00500 gapA; glyceraldehyde-3-phosphate dehydrogenase K25224 gapdh; glyceraldehyde-3-phosphate dehydrogenase (arsenate-transferring) [EC:1.2.1.107] D THMIRHAM_11870 msrA; peptide-methionine (S)-S-oxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D THMIRHAM_01260 msrB; peptide methionine sulfoxide reductase MsrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D THMIRHAM_04090 msrP; protein-methionine-sulfoxide reductase catalytic subunit MsrP K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-] D THMIRHAM_19720 cytochrome b561 K12262 cybB; superoxide oxidase [EC:1.10.3.17] D THMIRHAM_18290 hypothetical protein K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5] D THMIRHAM_08700 peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D THMIRHAM_09960 peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D THMIRHAM_14170 peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D THMIRHAM_12780 hypothetical protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D THMIRHAM_11570 arsC; arsenate reductase (glutaredoxin) K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D THMIRHAM_00490 hypothetical protein K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D THMIRHAM_09050 hypothetical protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D THMIRHAM_11970 pcm; protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D THMIRHAM_15710 protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D THMIRHAM_21430 ufaM; cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D THMIRHAM_02310 hypothetical protein K16868 tehB; tellurite methyltransferase [EC:2.1.1.265] D THMIRHAM_18090 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D THMIRHAM_10580 aat; leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6] D THMIRHAM_16500 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D THMIRHAM_06190 glnE; glutamate-ammonia-ligase adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89] D THMIRHAM_04330 UPF0061 protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108] D THMIRHAM_19750 thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D THMIRHAM_15410 thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D THMIRHAM_11710 phosphatase K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] D THMIRHAM_19580 phosphoglycerate mutase K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-] D THMIRHAM_02930 two-component system response regulator K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-] D THMIRHAM_06680 response regulator K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-] D THMIRHAM_08490 hypothetical protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D THMIRHAM_02390 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D THMIRHAM_08350 Maf-like protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-] D THMIRHAM_00660 ATPase AAA K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D THMIRHAM_00960 ATPase AAA K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D THMIRHAM_18730 bifunctional NAD(P)H-hydrate repair enzyme K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D THMIRHAM_14740 mpl; UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45] D THMIRHAM_04910 ATP-dependent DNA ligase K26441 lig; DNA ligase [EC:6.5.1.1] D THMIRHAM_10050 rsxD; electron transport complex subunit RsxD K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2] D THMIRHAM_10070 rnfB; electron transport complex subunit B K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2] D THMIRHAM_02040 copper-translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9] D THMIRHAM_19870 yloB; calcium-transporting ATPase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] C 99981 Carbohydrate metabolism C 99982 Energy metabolism D THMIRHAM_10360 fdxA; ferredoxin 1 K05524 fdxA; ferredoxin D THMIRHAM_10040 rnfG; electron transport complex subunit G K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G D THMIRHAM_10030 electron transport complex subunit E K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E D THMIRHAM_10080 electron transport complex subunit A K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A D THMIRHAM_02960 hypothetical protein K02448 norD; nitric oxide reductase NorD protein D THMIRHAM_03040 hypothetical protein K02448 norD; nitric oxide reductase NorD protein D THMIRHAM_02970 nirQ_1; denitrification regulatory protein NirQ K04748 norQ; nitric oxide reductase NorQ protein D THMIRHAM_03030 nirQ_2; denitrification regulatory protein NirQ K04748 norQ; nitric oxide reductase NorQ protein D THMIRHAM_13200 flavodoxin K03839 fldA; flavodoxin I C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D THMIRHAM_12310 hypothetical protein K08234 yaeR; glyoxylase I family protein D THMIRHAM_19030 yggS; YggS family pyridoxal phosphate enzyme K06997 yggS; PLP dependent protein C 99986 Glycan metabolism C 99987 Cofactor metabolism D THMIRHAM_01180 hypothetical protein K02498 hemY; HemY protein D THMIRHAM_04490 ubiB; putative protein kinase UbiB K03688 ubiB; ubiquinone biosynthesis protein D THMIRHAM_02460 hypothetical protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK C 99988 Secondary metabolism C 99999 Others D THMIRHAM_19170 phospholipase/carboxylesterase K06999 K06999; phospholipase/carboxylesterase D THMIRHAM_18430 GCN5 family N-acetyltransferase K09181 yfiQ; acetyltransferase B B 09192 Unclassified: genetic information processing C 99973 Transcription D THMIRHAM_06450 cold-shock protein K03704 cspA; cold shock protein D THMIRHAM_13730 cold-shock protein K03704 cspA; cold shock protein D THMIRHAM_06160 glnK_1; nitrogen regulatory protein P-II 1 K04752 glnK; nitrogen regulatory protein P-II 2 D THMIRHAM_13720 glnK_2; nitrogen regulatory protein P-II 1 K04752 glnK; nitrogen regulatory protein P-II 2 C 99974 Translation D THMIRHAM_20780 MBL fold metallo-hydrolase K07576 K07576; metallo-beta-lactamase family protein C 99975 Protein processing D THMIRHAM_10500 clpS; ATP-dependent Clp protease adapter protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS D THMIRHAM_11090 tig; trigger factor K03545 tig; trigger factor D THMIRHAM_04080 hypothetical protein K17247 msrQ; methionine sulfoxide reductase heme-binding subunit D THMIRHAM_08910 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein D THMIRHAM_02470 yifB; ATP-dependent protease K07391 comM; magnesium chelatase family protein D THMIRHAM_03260 prolyl 4-hydroxylase subunit alpha K07394 K07394; SM-20-related protein D THMIRHAM_03300 osmotically inducible protein C K07397 yhfA; putative redox protein D THMIRHAM_00240 cytochrome c biogenesis protein K07399 resB; cytochrome c biogenesis protein C 99976 Replication and repair D THMIRHAM_19760 UPF0758 protein K03630 radC; DNA repair protein RadC D THMIRHAM_17130 rmuC; DNA recombination protein RmuC K09760 rmuC; DNA recombination protein RmuC D THMIRHAM_16710 UPF0102 protein K07460 yraN; putative endonuclease D THMIRHAM_01570 hypothetical protein K07461 K07461; putative endonuclease D THMIRHAM_05250 endonuclease K07461 K07461; putative endonuclease D THMIRHAM_02400 dprA; DNA processing protein DprA K04096 smf; DNA processing protein D THMIRHAM_08120 recombination factor protein RarA K07478 ycaJ; putative ATPase D THMIRHAM_09290 transposase K07483 K07483; transposase C 99979 Viral proteins C 99998 Others D THMIRHAM_13670 hypothetical protein K03972 pspE; phage shock protein E D THMIRHAM_06700 hypothetical protein K07504 K07504; predicted type IV restriction endonuclease D THMIRHAM_17470 nucleoid-associated protein K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D THMIRHAM_14370 amino acid transporter K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D THMIRHAM_06270 putative phosphate permease K03306 TC.PIT; inorganic phosphate transporter, PiT family D THMIRHAM_12370 transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D THMIRHAM_19660 sodium:alanine symporter K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D THMIRHAM_06470 hypothetical protein K03453 TC.BASS; bile acid:Na+ symporter, BASS family D THMIRHAM_09480 bile acid:sodium symporter K03453 TC.BASS; bile acid:Na+ symporter, BASS family C 99978 Cell growth D THMIRHAM_11720 putative intracellular septation protein A K06190 ispZ; intracellular septation protein C 99993 Cell motility C 99995 Signaling proteins D THMIRHAM_12100 universal stress protein K06149 uspA; universal stress protein A D THMIRHAM_02140 bipA; GTP-binding protein K06207 typA; GTP-binding protein D THMIRHAM_18120 ybeZ; ATP-binding protein YbeZ K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D THMIRHAM_14180 phosphate starvation protein PhoH K07175 phoH2; PhoH-like ATPase D THMIRHAM_06100 hypothetical protein K07184 ygiM; SH3 domain protein D THMIRHAM_19630 UPF0234 protein K09767 yajQ; cyclic-di-GMP-binding protein C 99992 Structural proteins D THMIRHAM_00320 hypothetical protein K04754 mlaA; phospholipid-binding lipoprotein MlaA D THMIRHAM_12200 outer membrane protein chaperone K06142 hlpA; outer membrane protein D THMIRHAM_05180 capsular polysaccharide biosynthesis protein K07265 kpsS; capsular polysaccharide export protein D THMIRHAM_05170 kpsC; capsule polysaccharide transporter K07266 kpsC; capsular polysaccharide export protein D THMIRHAM_05090 ybhG; membrane protein K01993 ABC-2.TX; HlyD family secretion protein D THMIRHAM_01360 secretion protein HlyD K02005 ABC.CD.TX; HlyD family secretion protein D THMIRHAM_09520 membrane protein K02005 ABC.CD.TX; HlyD family secretion protein C 99994 Others D THMIRHAM_00870 hypothetical protein K07233 pcoB; copper resistance protein B B B 09194 Poorly characterized C 99996 General function prediction only D THMIRHAM_20470 rssA; serine protease K07001 K07001; NTE family protein D THMIRHAM_04110 erpA; putative iron-sulfur cluster insertion protein ErpA K15724 erpA; iron-sulfur cluster insertion protein D THMIRHAM_16420 sufB; Fe-S cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB D THMIRHAM_14420 hydrolase K07100 K07100; putative phosphoribosyl transferase D THMIRHAM_17720 fsxA; membrane protein K07113 fxsA; UPF0716 protein FxsA D THMIRHAM_06720 hypothetical protein K02426 sufE; cysteine desulfuration protein SufE D THMIRHAM_10240 hflD; high frequency lysogenization protein HflD K07153 hflD; high frequency lysogenization protein D THMIRHAM_16870 hypothetical protein K03744 lemA; LemA protein D THMIRHAM_21860 yjdF; membrane protein K08984 yjdF; putative membrane protein D THMIRHAM_11500 UPF0225 protein K09858 K09858; SEC-C motif domain protein D THMIRHAM_03160 hypothetical protein K13256 psiE; protein PsiE D THMIRHAM_10480 PhnA protein K06193 phnA; protein PhnA C 99997 Function unknown D THMIRHAM_13360 hypothetical protein K06950 K06950; uncharacterized protein D THMIRHAM_21450 NAD/FAD-binding protein K06954 K06954; uncharacterized protein D THMIRHAM_01850 hypothetical protein K06973 K06973; uncharacterized protein D THMIRHAM_03920 succinylglutamate desuccinylase K06987 K06987; uncharacterized protein D THMIRHAM_10230 cupin K06995 K06995; uncharacterized protein D THMIRHAM_21210 epimerase K07071 K07071; uncharacterized protein D THMIRHAM_00470 hypothetical protein K07089 K07089; uncharacterized protein D THMIRHAM_02230 UPF0721 transmembrane protein K07090 K07090; uncharacterized protein D THMIRHAM_19600 UPF0721 transmembrane protein K07090 K07090; uncharacterized protein D THMIRHAM_22510 UPF0721 transmembrane protein K07090 K07090; uncharacterized protein D THMIRHAM_21280 UPF0721 transmembrane protein K07090 K07090; uncharacterized protein D THMIRHAM_02160 hypothetical protein K07112 K07112; uncharacterized protein D THMIRHAM_02150 transporter K07112 K07112; uncharacterized protein D THMIRHAM_10370 hypothetical protein K07137 K07137; uncharacterized protein D THMIRHAM_19510 hypothetical protein K08998 K08998; uncharacterized protein D THMIRHAM_14090 hypothetical protein K09004 K09004; uncharacterized protein D THMIRHAM_00560 hypothetical protein K09004 K09004; uncharacterized protein D THMIRHAM_18640 aspartyl-tRNA amidotransferase subunit B K09117 K09117; uncharacterized protein D THMIRHAM_09070 hypothetical protein K09141 K09141; uncharacterized protein D THMIRHAM_06540 UPF0250 protein K09158 K09158; uncharacterized protein D THMIRHAM_12730 UPF0260 protein K09160 K09160; uncharacterized protein D THMIRHAM_21440 DUF1365 domain-containing protein K09701 K09701; uncharacterized protein D THMIRHAM_09170 UPF0178 protein K09768 K09768; uncharacterized protein D THMIRHAM_17030 hypothetical protein K09775 K09775; uncharacterized protein D THMIRHAM_11730 yciL; hypothetical protein K09780 K09780; uncharacterized protein D THMIRHAM_02170 yedI; membrane protein K09781 K09781; uncharacterized protein D THMIRHAM_03230 inner membrane protein K09790 K09790; uncharacterized protein D THMIRHAM_09710 UPF0434 protein K09791 K09791; uncharacterized protein D THMIRHAM_02480 hypothetical protein K09792 K09792; uncharacterized protein D THMIRHAM_08940 yfjF; UPF0125 protein K09801 K09801; uncharacterized protein D THMIRHAM_19980 hypothetical protein K00243 K00243; uncharacterized protein D THMIRHAM_21670 UPF0753 protein K09822 K09822; uncharacterized protein D THMIRHAM_06480 UPF0246 protein K09861 K09861; uncharacterized protein D THMIRHAM_14240 hypothetical protein K09895 K09895; uncharacterized protein D THMIRHAM_02810 hypothetical protein K09902 K09902; uncharacterized protein D THMIRHAM_12790 hypothetical protein K09919 K09919; uncharacterized protein D THMIRHAM_04550 hypothetical protein K09921 K09921; uncharacterized protein D THMIRHAM_09680 hypothetical protein K09928 K09928; uncharacterized protein D THMIRHAM_14390 hypothetical protein K09928 K09928; uncharacterized protein D THMIRHAM_18530 hypothetical protein K09929 K09929; uncharacterized protein D THMIRHAM_18540 UPF0276 protein K09930 K09930; uncharacterized protein D THMIRHAM_10180 hypothetical protein K09937 K09937; uncharacterized protein D THMIRHAM_06990 hypothetical protein K09941 K09941; uncharacterized protein D THMIRHAM_13090 hypothetical protein K09954 K09954; uncharacterized protein D THMIRHAM_08590 urea carboxylase K09967 K09967; uncharacterized protein D THMIRHAM_08600 urea carboxylase K09967 K09967; uncharacterized protein D THMIRHAM_14340 hypothetical protein K09978 K09978; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 20, 2024