+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Tuwongella immobilis
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
D Cap binding complex
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
D Pre-mRNA cleavage factor IIm (CFIIm)
D Cleavage and polyadenylation specificity factor (CPSF) complex
D Cleavage stimulation factor (CSTF) complex
D U7-dependent histone pre-mRNA processing factors
D DRB sensitivity inducing factor (DSIF) complex
D N6-methyltransferase complex
D Poly(A) addition factors
D Negative regulators of mRNA 3' end processing
C Other processing factors
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
D TREX complex
D TREX-2 complex
D Nuclear pore complex
D Ran-mediated transport factors
D eIF4F and regulatory proteins
D APOBEC1-ACF complex
D Other transport factors
C Surveillance factors
D Surveillance complex
D Protein phosphatase 2A
D Other surveillance factors
C Factors involved in mRNA localization
D Cargo complex
D Factors that have mRNA localization signals
D Trans-acting binding proteins
D Other mRNA localization factors
C mRNA cycle factors
D Common to processing body (P body) and stress granule
D P-body specific factors
D Stress granule specific factors
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
D Lsm complex
D 5' exonucleases
D Other 5'-3' decay factors
C 3'-5' decay
D Core exosome factors
D Exosome cofactors
D TRAMP complex
D Ski complex
D Ccr4-NOT complex
D Pan complex
D Other 3'-5' decay factors
C Other degradation factors
D RNases
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AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E GMBLW1_10150 rne rng family : Ribonuclease G and E OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_3259 PE=4 SV=1: S1: RNase_E_G K08300 rne; ribonuclease E [EC:3.1.26.12]
E GMBLW1_00290 ribonuclease iii : Ribonuclease 3 OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=rnc PE=3 SV=1: Ribonucleas_3_3: dsrm K03685 rnc; ribonuclease III [EC:3.1.26.3]
E GMBLW1_50030 rna binding metal dependent phosphohydrolase : Ribonuclease Y OS=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=rny PE=3 SV=1: DUF3552: KH_1: HD K18682 rny; ribonucrease Y [EC:3.1.-.-]
E GMBLW1_00580 ribonuclease r : Ribonuclease R OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=rnr PE=3 SV=1: RNB: S1 K12573 rnr; ribonuclease R [EC:3.1.13.1]
E GMBLW1_00590 cmp-binding protein : Putative domain HDIG-containing protein OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_1131 PE=4 SV=1: tRNA_anti-codon: HD K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-]
E GMBLW1_07630 Metal dependent phosphohydrolase OS=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) GN=Plabr_1993 PE=4 SV=1: HD K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-]
D Helicases
E GMBLW1_46690 dead deah box helicase : DEAD/DEAH box helicase domain protein OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_1620 PE=3 SV=1: DEAD: Helicase_C K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
E GMBLW1_22270 heavy metal transporter : Heavy metal transporter OS=Actinoplanes utahensis GN=MB27_42840 PE=4 SV=1: DEAD: Helicase_C: DbpA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
E GMBLW1_38570 helicase-like protein : Uncharacterized protein OS=Mesorhizobium sp. LNJC405B00 GN=X755_06925 PE=4 SV=1: DEAD: Helicase_C K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
E GMBLW1_16610 atp-dependent dna helicase : ATP-dependent DNA helicase RecQ OS=Rhodopirellula maiorica SM1 GN=RMSM_02027 PE=4 SV=1: DEAD: Helicase_C: RQC: HRDC K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Other RNA degradosome components
E GMBLW1_09520 enolase : Enolase OS=Coprobacillus sp. CAG:235 GN=eno PE=3 SV=1: Enolase_N: Enolase_C K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E GMBLW1_20040 polynucleotide phosphorylase : Polyribonucleotide nucleotidyltransferase OS=uncultured planctomycete GN=pnp PE=3 SV=1: RNase_PH: RNase_PH_C: PNPase: RNase_PH: RNase_PH_C: KH_1: S1 K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E GMBLW1_45770 transcription termination factor rho : Transcription termination factor Rho OS=Planctomyces maris DSM 8797 GN=rho PE=3 SV=1: Rho_RNA_bind: ATP-synt_ab K03628 rho; transcription termination factor Rho
E GMBLW1_07060 transcription termination factor rho : Transcription termination factor Rho OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=rho PE=3 SV=1: Rho_RNA_bind: ATP-synt_ab K03628 rho; transcription termination factor Rho
E GMBLW1_07390 transcription termination factor rho : Transcription termination factor Rho OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=rho PE=3 SV=1: Rho_N: Rho_RNA_bind: ATP-synt_ab K03628 rho; transcription termination factor Rho
C Other RNA degradation factors
D Chaperones
E GMBLW1_50090 chaperone protein : Chaperone protein DnaK OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=dnaK PE=2 SV=1: HSP70 K04043 dnaK; molecular chaperone DnaK
E GMBLW1_03470 chaperone protein : Heat shock protein 70 OS=Koribacter versatilis (strain Ellin345) GN=Acid345_0480 PE=3 SV=1: HSP70 K04043 dnaK; molecular chaperone DnaK
E GMBLW1_10030 heat shock protein hsp70 : Heat shock protein Hsp70 OS=Candidatus Entotheonella sp. TSY1 GN=ETSY1_09730 PE=3 SV=1: HSP70 K04043 dnaK; molecular chaperone DnaK
E GMBLW1_16980 Dnak protein, truncation OS=Planctomyces maris DSM 8797 GN=PM8797T_05145 PE=3 SV=1: HSP70: HSP70 K04043 dnaK; molecular chaperone DnaK
E GMBLW1_06890 chaperonin : 60 kDa chaperonin OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=groL PE=3 SV=1: Cpn60_TCP1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E GMBLW1_06910 chaperonin : 60 kDa chaperonin OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=groL PE=3 SV=1: Cpn60_TCP1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E GMBLW1_18440 molecular chaperone : 60 kDa chaperonin OS=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) GN=groL PE=3 SV=1: Cpn60_TCP1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
E GMBLW1_43580 polyphosphate kinase : Polyphosphate kinase OS=Hyalangium minutum GN=ppk PE=3 SV=1: PP_kinase_N: PP_kinase: PP_kinase_C K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
E GMBLW1_09920 trna adenylyltransferase : Metal dependent phosphohydrolase OS=Planctomyces maris DSM 8797 GN=PM8797T_01579 PE=3 SV=1: PolyA_pol: PolyA_pol_RNAbd K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
E GMBLW1_36070 carbon storage regulator : : CsrA K03563 csrA; carbon storage regulator
E GMBLW1_36340 carbon storage regulator : Carbon storage regulator homolog OS=Blastopirellula marina DSM 3645 GN=csrA PE=3 SV=1: CsrA K03563 csrA; carbon storage regulator
E GMBLW1_05310 carbon storage regulator : Carbon storage regulator homolog OS=Paenibacillus alvei DSM 29 GN=csrA PE=3 SV=1: CsrA K03563 csrA; carbon storage regulator
E GMBLW1_18060 carbon storage regulator : : CsrA K03563 csrA; carbon storage regulator
E GMBLW1_26010 carbon storage regulator : Carbon storage regulator homolog OS=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) GN=csrA PE=3 SV=1: CsrA K03563 csrA; carbon storage regulator
E GMBLW1_28150 carbon storage regulator : Carbon storage regulator CsrA OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_6732 PE=4 SV=1: CsrA K03563 csrA; carbon storage regulator
E GMBLW1_25640 atp-dependent helicase : ATP-dependent helicase HrpB OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_3120 PE=4 SV=1: DEAD: Helicase_C: HA2: HrpB_C K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
D Cofactors
D Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024