+F Repair protein KO #

  DNA Repair and Recombination Proteins - Tuwongella immobilis

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D GMBLW1_22900 cysteine methyltransferase : Methylated-DNA--protein-cysteine methyltransferase OS=Marinobacter nanhaiticus D15-8W GN=J057_16580 PE=3 SV=1: Methyltransf_1N: DNA_binding_1 K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D GMBLW1_38310 deoxyribodipyrimidine photo-lyase : Putative deoxyribodipyrimidine photo-lyase OS=Leptospira licerasiae str. MMD4847 GN=LEP1GSC178_0401 PE=4 SV=1: FAD_binding_7 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D GMBLW1_37690 DNA photolyase FAD-binding OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=Cagg_1589 PE=4 SV=1: FAD_binding_7 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D GMBLW1_07710 deoxyribodipyrimidine photo-lyase : DNA photolyase FAD-binding protein OS=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) GN=Isop_3295 PE=3 SV=1: DNA_photolyase: FAD_binding_7 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E GMBLW1_36570 uracil-dna glycosylase : Uracil-DNA glycosylase OS=Kitasatospora setae (strain ATCC 33774 / DSM 43861 / JCM 3304 / KCC A-0304 / NBRC 14216 / KM-6054) GN=ung2 PE=3 SV=1: HhH-GPD: HHH: UDG K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E GMBLW1_07890 a g-specific adenine glycosylase : A/G-specific adenine glycosylase OS=Blastopirellula marina DSM 3645 GN=DSM3645_11537 PE=4 SV=1: HhH-GPD: NUDIX_4 K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E GMBLW1_34730 endonuclease iii : Endonuclease III OS=Corynebacterium jeikeium ATCC 43734 GN=nth PE=3 SV=1: HhH-GPD: HHH K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E GMBLW1_15340 type iii restriction protein res subunit : DNA/RNA helicase, superfamily II OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_6347 PE=4 SV=1: Helicase_C_3: ResIII: Helicase_C K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D GMBLW1_37180 dna mismatch repair protein : MutT/NUDIX family protein OS=Nocardioidaceae bacterium Broad-1 GN=NBCG_03324 PE=3 SV=1: NUDIX K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GMBLW1_43180 -dihydro-8-oxoguanine-triphosphatase : Mutator mutT protein OS=Myxococcus xanthus (strain DK 1622) GN=mutT PE=3 SV=1: NUDIX K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GMBLW1_48710 adp-ribose pyrophosphatase : Uncharacterized protein OS=Nitrolancea hollandica Lb GN=NITHO_1380009 PE=3 SV=1: NUDIX K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GMBLW1_06110 nudix hydrolase : NUDIX hydrolase OS=Flavobacterium psychrophilum FPG101 GN=FPG101_06660 PE=4 SV=1: NUDIX K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D GMBLW1_22900 cysteine methyltransferase : Methylated-DNA--protein-cysteine methyltransferase OS=Marinobacter nanhaiticus D15-8W GN=J057_16580 PE=3 SV=1: Methyltransf_1N: DNA_binding_1 K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D GMBLW1_38310 deoxyribodipyrimidine photo-lyase : Putative deoxyribodipyrimidine photo-lyase OS=Leptospira licerasiae str. MMD4847 GN=LEP1GSC178_0401 PE=4 SV=1: FAD_binding_7 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D GMBLW1_37690 DNA photolyase FAD-binding OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=Cagg_1589 PE=4 SV=1: FAD_binding_7 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D GMBLW1_07710 deoxyribodipyrimidine photo-lyase : DNA photolyase FAD-binding protein OS=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) GN=Isop_3295 PE=3 SV=1: DNA_photolyase: FAD_binding_7 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D GMBLW1_43280 deoxyribodipyrimidine photolyase : Putative Deoxyribodipyrimidine photolyase-related protein OS=Thiomonas sp. CB2 GN=THICB2_570023 PE=4 SV=1: DPRP: FAD_binding_7 K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E GMBLW1_36570 uracil-dna glycosylase : Uracil-DNA glycosylase OS=Kitasatospora setae (strain ATCC 33774 / DSM 43861 / JCM 3304 / KCC A-0304 / NBRC 14216 / KM-6054) GN=ung2 PE=3 SV=1: HhH-GPD: HHH: UDG K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E GMBLW1_29310 DNA polymerase, bacteriophage-type OS=Blastopirellula marina DSM 3645 GN=DSM3645_10402 PE=4 SV=1: UDG K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E GMBLW1_31200 Uracil-DNA glycosylase family 5 OS=Patulibacter medicamentivorans GN=PAI11_37900 PE=4 SV=1: UDG K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E GMBLW1_29490 dna-3-methyladenine glycosylase ii : Putative DNA-3-methyladenine glycosylase II OS=Cyanothece sp. (strain ATCC 51142) GN=cce_3010 PE=4 SV=1: HhH-GPD K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E GMBLW1_07890 a g-specific adenine glycosylase : A/G-specific adenine glycosylase OS=Blastopirellula marina DSM 3645 GN=DSM3645_11537 PE=4 SV=1: HhH-GPD: NUDIX_4 K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E GMBLW1_02500 5-hydroxymethyluracil dna glycosylase : Formamidopyrimidine-DNA glycosylase OS=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) GN=mutM PE=3 SV=1: Fapy_DNA_glyco: H2TH: zf-FPG_IleRS K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E GMBLW1_34730 endonuclease iii : Endonuclease III OS=Corynebacterium jeikeium ATCC 43734 GN=nth PE=3 SV=1: HhH-GPD: HHH K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E GMBLW1_06410 endonuclease iv : Probable endonuclease 4 OS=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) GN=nfo PE=3 SV=1: AP_endonuc_2 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E GMBLW1_14440 endonuclease v : Endonuclease V OS=Paenibacillus sp. MSt1 GN=nfi PE=3 SV=1: Endonuclease_5 K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E GMBLW1_18850 single-stranded-dna-specific exonuclease : Single-strand DNA-specific exonuclease OS=Planctomyces maris DSM 8797 GN=PM8797T_28899 PE=4 SV=1: DHH: DHHA1 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E GMBLW1_41300 nad-dependent dna ligase : DNA ligase OS=uncultured bacterium GN=ligA PE=3 SV=1: DNA_ligase_aden: DNA_ligase_OB: HHH_5: HHH_2: BRCT K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E GMBLW1_07410 dna polymerase i : DNA polymerase I OS=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=Plim_3011 PE=3 SV=1: 5_3_exonuc_N: 5_3_exonuc: DNA_pol_A_exo1: DNA_pol_A K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E GMBLW1_08250 excinuclease abc subunit a : Excinuclease ABC, A subunit OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_1575 PE=3 SV=1: ABC_tran: ABC_tran K03701 uvrA; excinuclease ABC subunit A E GMBLW1_36850 excinuclease abc subunit b : UvrABC system protein B OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=uvrB PE=3 SV=1: ResIII: Helicase_C: UvrB: UVR K03702 uvrB; excinuclease ABC subunit B E GMBLW1_43320 excinuclease abc subunit c : Excinuclease ABC subunit C OS=Rhodopirellula maiorica SM1 GN=RMSM_06429 PE=4 SV=1: GIY-YIG: UVR K03703 uvrC; excinuclease ABC subunit C E GMBLW1_11760 excinuclease abc subunit c : UvrABC system protein C OS=Planctomyces maris DSM 8797 GN=PM8797T_05435 PE=4 SV=1: GIY-YIG: UVR: UvrC_HhH_N K03703 uvrC; excinuclease ABC subunit C E GMBLW1_15760 atp-dependent dna helicase : DNA helicase OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_5592 PE=4 SV=1: UvrD-helicase: UvrD_C K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GMBLW1_07410 dna polymerase i : DNA polymerase I OS=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=Plim_3011 PE=3 SV=1: 5_3_exonuc_N: 5_3_exonuc: DNA_pol_A_exo1: DNA_pol_A K02335 polA; DNA polymerase I [EC:2.7.7.7] E GMBLW1_41300 nad-dependent dna ligase : DNA ligase OS=uncultured bacterium GN=ligA PE=3 SV=1: DNA_ligase_aden: DNA_ligase_OB: HHH_5: HHH_2: BRCT K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F GMBLW1_14600 dna-directed rna polymerase subunit beta : DNA-directed RNA polymerase subunit beta OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=rpoB PE=3 SV=1: RNA_pol_Rpb2_1: RNA_pol_Rpb2_2: RNA_pol_Rpb2_3: RNA_pol_Rpb2_45: RNA_pol_Rpb2_6: RNA_pol_Rpb2_7 K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F GMBLW1_14590 dna-directed rna polymerase subunit beta : DNA-directed RNA polymerase subunit beta' OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=rpoC PE=3 SV=1: RNA_pol_Rpb1_1: RNA_pol_Rpb1_2: RNA_pol_Rpb1_3: RNA_pol_Rpb1_4: RNA_pol_Rpb1_5 K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F GMBLW1_12480 dna-directed rna polymerase subunit alpha : DNA-directed RNA polymerase subunit alpha OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=rpoA PE=3 SV=1: RNA_pol_L: RNA_pol_A_bac: RNA_pol_A_CTD K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F GMBLW1_18560 rna polymerase alpha subunit domain protein : DNA-directed RNA polymerase subunit alpha (Fragment) OS=uncultured planctomycete GN=HGMM_F13D05C26 PE=4 SV=1: TPR_11: TPR_1: RNA_pol_A_CTD: RNA_pol_A_CTD K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F GMBLW1_50150 dna-directed rna polymerase subunit omega : DNA-directed RNA polymerase subunit omega OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=rpoZ PE=3 SV=1: RNA_pol_Rpb6 K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F GMBLW1_25450 transcription-repair coupling factor : Transcription-repair-coupling factor OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=mfd PE=3 SV=1: CarD_CdnL_TRCF: DEAD: Helicase_C: TRCF K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E GMBLW1_32310 dna mismatch repair protein : DNA mismatch repair protein MutS OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=mutS PE=3 SV=1: MutS_I: MutS_II: MutS_III: MutS_IV: MutS_V K03555 mutS; DNA mismatch repair protein MutS E GMBLW1_08360 2 family protein : Mismatch repair ATPase (MutS family) OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_2874 PE=3 SV=1: MutS_III: MutS_V K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E GMBLW1_22100 dna mismatch repair protein : DNA mismatch repair protein MutL OS=Rhodopirellula maiorica SM1 GN=mutL PE=3 SV=1: HATPase_c_3: DNA_mis_repair: MutL_C K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E GMBLW1_12760 exodeoxyribonuclease vii large subunit : Exonuclease VII large subunit OS=uncultured archaeon GZfos19C8 GN=GZ19C8_15 PE=3 SV=1: tRNA_anti_2: Exonuc_VII_L K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E GMBLW1_12770 exodeoxyribonuclease vii small subunit : Exodeoxyribonuclease 7 small subunit OS=Planctomyces maris DSM 8797 GN=xseB PE=3 SV=1: Exonuc_VII_S K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E GMBLW1_37470 dna polymerase iii subunit alpha : DNA-directed DNA polymerase OS=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) GN=Isop_1325 PE=4 SV=1: PHP: DNA_pol3_alpha: HHH_6 K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E GMBLW1_33930 dna polymerase iii subunit beta : DNA polymerase III subunit beta OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_0120 PE=4 SV=1: DNA_pol3_beta: DNA_pol3_beta_2: DNA_pol3_beta_3 K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E GMBLW1_33180 dna polymerase iii subunit delta : DNA polymerase III, delta subunit OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_2977 PE=4 SV=1: DNA_pol3_delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E GMBLW1_08300 dna polymerase iii subunit delta : DNA polymerase III, delta'' subunit OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_4806 PE=4 SV=1: DNA_pol3_delta2 K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E GMBLW1_11000 exonuclease : Exonuclease OS=delta proteobacterium MLMS-1 GN=MldDRAFT_3354 PE=4 SV=1: RNase_T K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E GMBLW1_31120 dna polymerase iii subunit gamma tau : DNA polymerase III, subunit gamma/tau OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_1310 PE=4 SV=1: DNA_pol3_delta2: DNA_pol3_gamma3 K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E GMBLW1_41300 nad-dependent dna ligase : DNA ligase OS=uncultured bacterium GN=ligA PE=3 SV=1: DNA_ligase_aden: DNA_ligase_OB: HHH_5: HHH_2: BRCT K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E GMBLW1_15760 atp-dependent dna helicase : DNA helicase OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_5592 PE=4 SV=1: UvrD-helicase: UvrD_C K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GMBLW1_38890 single-stranded dna-binding protein : Single-stranded DNA-binding protein OS=Bartonella tamiae Th307 GN=MEG_01850 PE=4 SV=1: SSB K03111 ssb; single-strand DNA-binding protein E GMBLW1_42850 single-stranded dna-binding protein : Single-stranded DNA-binding protein OS=Coraliomargarita sp. CAG:312 GN=BN601_01296 PE=4 SV=1: SSB K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E GMBLW1_36400 recombinase : Helicase, RecD/TraA family OS=Thiorhodococcus drewsii AZ1 GN=ThidrDRAFT_0629 PE=4 SV=1: HHH_4: AAA_30: UvrD_C_2 K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E GMBLW1_18470 recombinase a : Protein RecA OS=uncultured planctomycete GN=recA PE=3 SV=1: RecA K03553 recA; recombination protein RecA E GMBLW1_42910 holliday junction dna helicase ruva : Holliday junction ATP-dependent DNA helicase RuvA OS=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=ruvA PE=3 SV=1: HHH_5 K03550 ruvA; holliday junction DNA helicase RuvA E GMBLW1_42920 holliday junction dna helicase : Holliday junction ATP-dependent DNA helicase RuvB OS=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) GN=ruvB PE=3 SV=1: RuvB_N: RuvB_C K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E GMBLW1_42900 crossover junction endodeoxyribonuclease : Crossover junction endodeoxyribonuclease RuvC OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=ruvC PE=3 SV=1: RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E GMBLW1_36080 crossover junction endodeoxyribonuclease : Uncharacterized protein OS=Candidatus Paracaedibacter acanthamoebae GN=ID47_03010 PE=4 SV=1: RusA K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E GMBLW1_08730 crossover junction endodeoxyribonuclease : Uncharacterized protein OS=Candidatus Paracaedibacter acanthamoebae GN=ID47_03010 PE=4 SV=1: RusA K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E GMBLW1_18070 crossover junction endodeoxyribonuclease : Uncharacterized protein OS=Candidatus Paracaedibacter acanthamoebae GN=ID47_03010 PE=4 SV=1: RusA K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E GMBLW1_06810 primosomal protein n : Primosomal protein N OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_7288 PE=4 SV=1: DEAD: Helicase_C K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E GMBLW1_12990 SMC domain protein OS=bacterium UASB14 GN=U14_05899 PE=4 SV=1: SMC_N: Prefoldin_2 K03546 sbcC; DNA repair protein SbcC/Rad50 E GMBLW1_23320 ATPase involved in DNA repair OS=Chthonomonas calidirosea (strain DSM 23976 / ICMP 18418 / T49) GN=CCALI_02828 PE=4 SV=1: SMC_N K03546 sbcC; DNA repair protein SbcC/Rad50 E GMBLW1_12980 exonuclease d subunit : Putative cell division topological specificity factor MinE OS=Capnocytophaga sp. oral taxon 380 str. F0488 GN=HMPREF9078_00399 PE=4 SV=1: Metallophos_2 K03547 sbcD; DNA repair protein SbcD/Mre11 E GMBLW1_23310 nuclease subunit d : Exonuclease SbcD OS=Tolypothrix bouteillei VB521301 GN=DA73_01685 PE=4 SV=1: Metallophos_2 K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E GMBLW1_18470 recombinase a : Protein RecA OS=uncultured planctomycete GN=recA PE=3 SV=1: RecA K03553 recA; recombination protein RecA E GMBLW1_18850 single-stranded-dna-specific exonuclease : Single-strand DNA-specific exonuclease OS=Planctomyces maris DSM 8797 GN=PM8797T_28899 PE=4 SV=1: DHH: DHHA1 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E GMBLW1_00940 dna repair protein : DNA repair protein RecN OS=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) GN=Isop_2126 PE=3 SV=1: SMC_N K03631 recN; DNA repair protein RecN (Recombination protein N) E GMBLW1_05060 Uncharacterized protein OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_0973 PE=4 SV=1 K03554 rdgC; recombination associated protein RdgC E GMBLW1_42910 holliday junction dna helicase ruva : Holliday junction ATP-dependent DNA helicase RuvA OS=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=ruvA PE=3 SV=1: HHH_5 K03550 ruvA; holliday junction DNA helicase RuvA E GMBLW1_42920 holliday junction dna helicase : Holliday junction ATP-dependent DNA helicase RuvB OS=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) GN=ruvB PE=3 SV=1: RuvB_N: RuvB_C K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E GMBLW1_42900 crossover junction endodeoxyribonuclease : Crossover junction endodeoxyribonuclease RuvC OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=ruvC PE=3 SV=1: RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E GMBLW1_14490 rep helicase : DNA helicase OS=Planctomyces maris DSM 8797 GN=PM8797T_01814 PE=4 SV=1: UvrD-helicase: UvrD_C K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E GMBLW1_14500 atp-dependent nuclease subunit b-like protein : Uncharacterized protein OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_5928 PE=4 SV=1: Exonuc_V_gamma: PDDEXK_1 K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E GMBLW1_51910 crispr-associated protein cas1 : CRISPR-associated protein Cas1 OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_1137 PE=3 SV=1: DUF2276: RVT_1: Cas_Cas1 K15342 cas1; CRISP-associated protein Cas1 E GMBLW1_22560 crispr-associated protein cas4 : CRISPR-associated endonuclease Cas1 OS=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=cas1 PE=3 SV=1: Cas_Cas4: Cas_Cas1 K15342 cas1; CRISP-associated protein Cas1 E GMBLW1_08740 type iii restriction protein res subunit : Type III restriction protein res subunit OS=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) GN=Isop_2443 PE=4 SV=1: ResIII: Helicase_C: UPF0547 K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E GMBLW1_12990 SMC domain protein OS=bacterium UASB14 GN=U14_05899 PE=4 SV=1: SMC_N: Prefoldin_2 K03546 sbcC; DNA repair protein SbcC/Rad50 E GMBLW1_23320 ATPase involved in DNA repair OS=Chthonomonas calidirosea (strain DSM 23976 / ICMP 18418 / T49) GN=CCALI_02828 PE=4 SV=1: SMC_N K03546 sbcC; DNA repair protein SbcC/Rad50 E GMBLW1_12980 exonuclease d subunit : Putative cell division topological specificity factor MinE OS=Capnocytophaga sp. oral taxon 380 str. F0488 GN=HMPREF9078_00399 PE=4 SV=1: Metallophos_2 K03547 sbcD; DNA repair protein SbcD/Mre11 E GMBLW1_23310 nuclease subunit d : Exonuclease SbcD OS=Tolypothrix bouteillei VB521301 GN=DA73_01685 PE=4 SV=1: Metallophos_2 K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F GMBLW1_49880 dna gyrase subunit a : DNA gyrase subunit A OS=Rhodopirellula sp. SWK7 GN=gyrA PE=3 SV=1: DNA_topoisoIV: DNA_gyraseA_C: DNA_gyraseA_C: DNA_gyraseA_C: DNA_gyraseA_C: DNA_gyraseA_C: DNA_gyraseA_C K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F GMBLW1_16570 dna topoisomerase : DNA topoisomerase (ATP-hydrolyzing) OS=uncultured planctomycete GN=HGMM_F22C11C08 PE=4 SV=1: DNA_topoisoIV: DNA_gyraseA_C: DNA_gyraseA_C K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F GMBLW1_16560 dna topoisomerase iv subunit b : DNA gyrase subunit B OS=uncultured planctomycete GN=HGMM_F22C11C07 PE=3 SV=1: HATPase_c: DNA_gyraseB: Toprim: DNA_gyraseB_C K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F GMBLW1_29410 dna gyrase subunit b : DNA gyrase subunit B OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=gyrB PE=3 SV=1: HATPase_c: DNA_gyraseB: Toprim: DNA_gyraseB_C K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F GMBLW1_43260 dna topoisomerase i : DNA topoisomerase 1 OS=uncultured planctomycete GN=topA PE=3 SV=1: Toprim: Topoisom_bac: zf-C4_Topoisom: zf-C4_Topoisom: zf-C4_Topoisom: zf-C4_Topoisom: zf-C4_Topoisom K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F GMBLW1_18850 single-stranded-dna-specific exonuclease : Single-strand DNA-specific exonuclease OS=Planctomyces maris DSM 8797 GN=PM8797T_28899 PE=4 SV=1: DHH: DHHA1 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F GMBLW1_41300 nad-dependent dna ligase : DNA ligase OS=uncultured bacterium GN=ligA PE=3 SV=1: DNA_ligase_aden: DNA_ligase_OB: HHH_5: HHH_2: BRCT K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F GMBLW1_38570 helicase-like protein : Uncharacterized protein OS=Mesorhizobium sp. LNJC405B00 GN=X755_06925 PE=4 SV=1: DEAD: Helicase_C K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F GMBLW1_16610 atp-dependent dna helicase : ATP-dependent DNA helicase RecQ OS=Rhodopirellula maiorica SM1 GN=RMSM_02027 PE=4 SV=1: DEAD: Helicase_C: RQC: HRDC K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F GMBLW1_08250 excinuclease abc subunit a : Excinuclease ABC, A subunit OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_1575 PE=3 SV=1: ABC_tran: ABC_tran K03701 uvrA; excinuclease ABC subunit A F GMBLW1_36850 excinuclease abc subunit b : UvrABC system protein B OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=uvrB PE=3 SV=1: ResIII: Helicase_C: UvrB: UVR K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D GMBLW1_09110 dna-directed dna polymerase : Nucleotidyltransferase/DNA polymerase involved in DNA repair OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_0546 PE=4 SV=1: IMS: IMS_C K03502 umuC; DNA polymerase V D GMBLW1_36230 : Peptidase_S24 K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D GMBLW1_18470 recombinase a : Protein RecA OS=uncultured planctomycete GN=recA PE=3 SV=1: RecA K03553 recA; recombination protein RecA D GMBLW1_08620 peptidase s24 : Uncharacterized protein OS=Pseudomonas aeruginosa BL13 GN=Q067_02403 PE=4 SV=1: HTH_31: Peptidase_S24 K01356 lexA; repressor LexA [EC:3.4.21.88] D GMBLW1_09840 sos-response transcriptional repressors (-mediated autopeptidases) : SOS-response transcriptional repressors (RecA-mediated autopeptidases) OS=Faecalibacterium sp. CAG:82 GN=BN792_01821 PE=4 SV=1: HTH_3: Peptidase_S24 K01356 lexA; repressor LexA [EC:3.4.21.88] D GMBLW1_11940 family transcriptional regulator : LexA repressor OS=Planctomyces maris DSM 8797 GN=lexA PE=3 SV=1: LexA_DNA_bind: Peptidase_S24 K01356 lexA; repressor LexA [EC:3.4.21.88] D GMBLW1_18220 lexa repressor : LexA repressor OS=Desulforudis audaxviator (strain MP104C) GN=Daud_1912 PE=3 SV=1: HTH_31: Peptidase_S24 K01356 lexA; repressor LexA [EC:3.4.21.88] D GMBLW1_00940 dna repair protein : DNA repair protein RecN OS=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) GN=Isop_2126 PE=3 SV=1: SMC_N K03631 recN; DNA repair protein RecN (Recombination protein N) D GMBLW1_38890 single-stranded dna-binding protein : Single-stranded DNA-binding protein OS=Bartonella tamiae Th307 GN=MEG_01850 PE=4 SV=1: SSB K03111 ssb; single-strand DNA-binding protein D GMBLW1_42850 single-stranded dna-binding protein : Single-stranded DNA-binding protein OS=Coraliomargarita sp. CAG:312 GN=BN601_01296 PE=4 SV=1: SSB K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase D GMBLW1_33540 histidinol phosphatase : DNA polymerase IV (Family X) OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_2234 PE=4 SV=1: HHH_8: DNA_pol_B_thumb: PHP K02347 polX; DNA polymerase (family X) C DNA helicases D GMBLW1_28730 helicase c2 : DNA helicase, Rad3 OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_5251 PE=4 SV=1: DEAD: DEAD_2: Helicase_C_2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D GMBLW1_41920 dead deah box helicase : DEAD/H associated domain protein OS=Roseiflexus sp. (strain RS-1) GN=RoseRS_3430 PE=4 SV=1: DEAD: Helicase_C: DEAD_assoc K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D GMBLW1_37180 dna mismatch repair protein : MutT/NUDIX family protein OS=Nocardioidaceae bacterium Broad-1 GN=NBCG_03324 PE=3 SV=1: NUDIX K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GMBLW1_43180 -dihydro-8-oxoguanine-triphosphatase : Mutator mutT protein OS=Myxococcus xanthus (strain DK 1622) GN=mutT PE=3 SV=1: NUDIX K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GMBLW1_48710 adp-ribose pyrophosphatase : Uncharacterized protein OS=Nitrolancea hollandica Lb GN=NITHO_1380009 PE=3 SV=1: NUDIX K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GMBLW1_06110 nudix hydrolase : NUDIX hydrolase OS=Flavobacterium psychrophilum FPG101 GN=FPG101_06660 PE=4 SV=1: NUDIX K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GMBLW1_18770 ribonucleoside-diphosphate adenosylcobalamin-dependent : Ribonucleoside-diphosphate reductase subunit alpha OS=Melioribacter roseus (strain JCM 17771 / P3M-2) GN=MROS_2107 PE=4 SV=1: Ribonuc_red_2_N: Ribonuc_red_lgC: Ribonuc_red_lgC: TSCPD K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others D GMBLW1_49960 phosphoesterase domain protein : Phosphoesterase RecJ domain protein OS=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=Plim_0422 PE=4 SV=1: DHH: DHHA1 K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024