+D GENES KO #

  KEGG Orthology (KO) - Tissierella sp. Yu-01

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A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:tis00010] D P3962_02210 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D P3962_10155 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D P3962_08385 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D P3962_00970 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D P3962_13240 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D P3962_05360 fba; class II fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D P3962_06540 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D P3962_06115 type II glyceraldehyde-3-phosphate dehydrogenase K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59] D P3962_06550 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59] D P3962_06110 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D P3962_06545 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D P3962_06535 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D P3962_06530 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D P3962_00975 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D P3962_01920 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D P3962_11110 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D P3962_11115 alpha-ketoacid dehydrogenase subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D P3962_11120 dihydrolipoamide acetyltransferase family protein K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D P3962_07585 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D P3962_11125 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D P3962_00910 nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D P3962_14730 nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D P3962_03925 2-oxoacid:acceptor oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D P3962_05065 2-oxoacid:acceptor oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D P3962_07075 3-methyl-2-oxobutanoate dehydrogenase subunit VorB K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D P3962_03930 2-oxoacid:ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D P3962_05070 2-oxoacid:ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D P3962_07070 thiamine pyrophosphate-dependent enzyme K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D P3962_13625 glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D P3962_00140 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D P3962_05245 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D P3962_00990 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] C 00020 Citrate cycle (TCA cycle) [PATH:tis00020] D P3962_07585 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D P3962_11125 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D P3962_03925 2-oxoacid:acceptor oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D P3962_05065 2-oxoacid:acceptor oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D P3962_07075 3-methyl-2-oxobutanoate dehydrogenase subunit VorB K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D P3962_03930 2-oxoacid:ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D P3962_05070 2-oxoacid:ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D P3962_07070 thiamine pyrophosphate-dependent enzyme K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D P3962_03935 2-oxoacid:acceptor oxidoreductase family protein K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3] D P3962_07065 2-oxoacid:acceptor oxidoreductase family protein K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3] D P3962_03920 4Fe-4S binding protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3] D P3962_07080 4Fe-4S dicluster domain-containing protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3] D P3962_02620 fumarate hydratase K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D P3962_02625 Fe-S-containing hydro-lyase K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D P3962_13075 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1] D P3962_01450 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1] D P3962_00990 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D P3962_11110 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D P3962_11115 alpha-ketoacid dehydrogenase subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D P3962_11120 dihydrolipoamide acetyltransferase family protein K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D P3962_00910 nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D P3962_14730 nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] C 00030 Pentose phosphate pathway [PATH:tis00030] D P3962_08385 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D P3962_04390 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D P3962_00770 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D P3962_06100 transketolase family protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D P3962_06105 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D P3962_06175 RpiB/LacA/LacB family sugar-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D P3962_06180 RpiB/LacA/LacB family sugar-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D P3962_13295 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D P3962_03430 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D P3962_07575 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D P3962_05245 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D P3962_08360 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D P3962_05440 aldehyde ferredoxin oxidoreductase family protein K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D P3962_05520 aldehyde ferredoxin oxidoreductase N-terminal domain-containing protein K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D P3962_13090 aldehyde ferredoxin oxidoreductase C-terminal domain-containing protein K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D P3962_13740 aldehyde ferredoxin oxidoreductase family protein K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D P3962_05360 fba; class II fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D P3962_00970 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D P3962_13240 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] C 00040 Pentose and glucuronate interconversions [PATH:tis00040] D P3962_12735 UxaA family hydrolase K16850 uxaA2; altronate dehydratase large subunit [EC:4.2.1.7] D P3962_12870 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D P3962_04390 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D P3962_06170 ribulokinase K00853 araB; L-ribulokinase [EC:2.7.1.16] D P3962_02195 class II aldolase/adducin family protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] C 00051 Fructose and mannose metabolism [PATH:tis00051] D P3962_10150 ROK family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D P3962_10145 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D P3962_02195 class II aldolase/adducin family protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] D P3962_00970 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D P3962_13240 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D P3962_01415 zinc-binding dehydrogenase K19956 sorE; L-sorbose 1-phosphate reductase [EC:1.1.1.-] D P3962_01410 pfkB; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D P3962_05360 fba; class II fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D P3962_06540 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D P3962_06175 RpiB/LacA/LacB family sugar-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D P3962_06180 RpiB/LacA/LacB family sugar-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D P3962_13295 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D P3962_13840 PTS sugar transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D P3962_13830 PTS sugar transporter subunit IIC K02795 manY; mannose PTS system EIIC component D P3962_13835 PTS system mannose/fructose/sorbose family transporter subunit IID K02796 manZ; mannose PTS system EIID component D P3962_01405 PTS sugar transporter subunit IIA K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197] D P3962_01395 PTS mannitol transporter subunit IICBA K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] C 00052 Galactose metabolism [PATH:tis00052] D P3962_06285 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D P3962_12870 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D P3962_05245 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D P3962_02210 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D P3962_10155 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D P3962_05015 PTS transporter subunit IIC K02775 gatC; galactitol PTS system EIIC component D P3962_01340 pfkB; 1-phosphofructokinase K00917 lacC; tagatose 6-phosphate kinase [EC:2.7.1.144] D P3962_05230 PfkB family carbohydrate kinase K00917 lacC; tagatose 6-phosphate kinase [EC:2.7.1.144] D P3962_00970 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D P3962_13240 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D P3962_01335 gatY; tagatose-bisphosphate aldolase subunit GatY K08302 gatY-kbaY; tagatose 1,6-diphosphate aldolase GatY/KbaY [EC:4.1.2.40] D P3962_01325 PTS sugar transporter subunit IIA K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-] D P3962_01305 SIS domain-containing protein K02082 agaS; D-galactosamine 6-phosphate deaminase/isomerase [EC:3.5.99.-] D P3962_01310 agaB; PTS galactosamine transporter subunit IIB K10984 agaB; galactosamine PTS system EIIB component [EC:2.7.1.-] D P3962_01315 agaC; PTS galactosamine transporter subunit IIC K10985 agaC; galactosamine PTS system EIIC component D P3962_01320 agaD; PTS galactosamine transporter subunit IID K10986 agaD; galactosamine PTS system EIID component C 00053 Ascorbate and aldarate metabolism D P3962_00140 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00500 Starch and sucrose metabolism [PATH:tis00500] D P3962_12870 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D P3962_05575 hypothetical protein K00702 E2.4.1.20; cellobiose phosphorylase [EC:2.4.1.20] D P3962_09245 rfbF; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D P3962_12300 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D P3962_12305 glgD; glucose-1-phosphate adenylyltransferase subunit GlgD K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D P3962_12310 glgA; glycogen synthase GlgA K00703 glgA; starch synthase [EC:2.4.1.21] D P3962_12295 glgB; 1,4-alpha-glucan branching protein GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D P3962_09445 glycogen/starch/alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D P3962_12315 pulA; type I pullulanase K01200 pulA; pullulanase [EC:3.2.1.41] D P3962_09450 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25] D P3962_09460 pgmB; beta-phosphoglucomutase K05342 treP; alpha,alpha-trehalose phosphorylase [EC:2.4.1.64] D P3962_05245 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D P3962_02210 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D P3962_10155 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D P3962_08385 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D P3962_10150 ROK family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:tis00520] D P3962_02205 nagZ; beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D P3962_05600 hypothetical protein K18675 chbP; N,N'-diacetylchitobiose phosphorylase [EC:2.4.1.280] D P3962_13855 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D P3962_05205 nagB; glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6] D P3962_10150 ROK family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D P3962_09400 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D P3962_07005 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D P3962_08365 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D P3962_13870 murQ; N-acetylmuramic acid 6-phosphate etherase K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126] D P3962_03500 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D P3962_13320 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D P3962_00915 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D P3962_13310 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D P3962_00730 nucleotide sugar dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] D P3962_02210 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D P3962_10155 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D P3962_05245 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D P3962_12870 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D P3962_06285 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D P3962_13840 PTS sugar transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D P3962_13830 PTS sugar transporter subunit IIC K02795 manY; mannose PTS system EIIC component D P3962_13835 PTS system mannose/fructose/sorbose family transporter subunit IID K02796 manZ; mannose PTS system EIID component D P3962_08385 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D P3962_10145 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D P3962_09245 rfbF; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D P3962_09240 rfbG; CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45] D P3962_09250 rfbH; lipopolysaccharide biosynthesis protein RfbH K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1] D P3962_12300 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D P3962_12305 glgD; glucose-1-phosphate adenylyltransferase subunit GlgD K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] C 00620 Pyruvate metabolism [PATH:tis00620] D P3962_00910 nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D P3962_14730 nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D P3962_03925 2-oxoacid:acceptor oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D P3962_05065 2-oxoacid:acceptor oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D P3962_07075 3-methyl-2-oxobutanoate dehydrogenase subunit VorB K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D P3962_03930 2-oxoacid:ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D P3962_05070 2-oxoacid:ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D P3962_07070 thiamine pyrophosphate-dependent enzyme K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D P3962_11110 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D P3962_11115 alpha-ketoacid dehydrogenase subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D P3962_11120 dihydrolipoamide acetyltransferase family protein K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D P3962_07585 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D P3962_11125 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D P3962_09515 pflB; formate C-acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D P3962_13170 acetaldehyde dehydrogenase (acetylating) K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10] D P3962_13625 glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D P3962_04325 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D P3962_03425 phosphate propanoyltransferase K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8] D P3962_00975 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D P3962_00140 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D P3962_05500 VOC family protein K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D P3962_13080 VOC family protein K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D P3962_04575 MBL fold metallo-hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D P3962_06075 larA; nickel-dependent lactate racemase K22373 larA; lactate racemase [EC:5.1.2.1] D P3962_10600 NADP-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D P3962_09985 oxaloacetate decarboxylase subunit alpha K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D P3962_10360 oxaloacetate decarboxylase subunit alpha K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D P3962_09560 sodium ion-translocating decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D P3962_10370 sodium ion-translocating decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D P3962_13075 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1] D P3962_01450 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1] D P3962_02620 fumarate hydratase K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D P3962_02625 Fe-S-containing hydro-lyase K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D P3962_00990 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D P3962_01920 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D P3962_05620 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:tis00630] D P3962_05620 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D P3962_05625 MaoC family dehydratase K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] D P3962_08250 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D P3962_08260 cobalamin B12-binding domain-containing protein K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D P3962_08265 methylmalonyl-CoA mutase family protein K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D P3962_02610 methylaspartate mutase subunit E K19268 glmE; methylaspartate mutase epsilon subunit [EC:5.4.99.1] D P3962_02600 glmS; methylaspartate mutase subunit S K01846 glmS; methylaspartate mutase sigma subunit [EC:5.4.99.1] D P3962_02615 methylaspartate ammonia-lyase K04835 mal; methylaspartate ammonia-lyase [EC:4.3.1.2] D P3962_08600 catalase K03781 katE; catalase [EC:1.11.1.6] D P3962_10025 D-2-hydroxyacid dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D P3962_06355 HAD family hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D P3962_14085 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D P3962_04550 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D P3962_05430 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D P3962_07595 gcvPA; aminomethyl-transferring glycine dehydrogenase subunit GcvPA K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D P3962_07590 gcvPB; aminomethyl-transferring glycine dehydrogenase subunit GcvPB K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D P3962_07605 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D P3962_07585 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D P3962_11125 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D P3962_07600 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein D P3962_10015 garR; 2-hydroxy-3-oxopropionate reductase K00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60] D P3962_10040 garR; 2-hydroxy-3-oxopropionate reductase K00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60] D P3962_10065 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D P3962_01470 ttdA; L(+)-tartrate dehydratase subunit alpha K03779 ttdA; L(+)-tartrate dehydratase alpha subunit [EC:4.2.1.32] D P3962_01475 ttdB; L(+)-tartrate dehydratase subunit beta K03780 ttdB; L(+)-tartrate dehydratase beta subunit [EC:4.2.1.32] D P3962_05160 molybdopterin-dependent oxidoreductase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] C 00640 Propanoate metabolism [PATH:tis00640] D P3962_04325 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D P3962_03425 phosphate propanoyltransferase K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8] D P3962_07585 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D P3962_11125 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D P3962_09515 pflB; formate C-acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D P3962_08250 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D P3962_08260 cobalamin B12-binding domain-containing protein K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D P3962_08265 methylmalonyl-CoA mutase family protein K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D P3962_02015 methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3] C 00650 Butanoate metabolism [PATH:tis00650] D P3962_05620 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D P3962_05615 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D P3962_05610 enoyl-CoA hydratase-related protein K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17] D P3962_07090 buk; butyrate kinase K00929 buk; butyrate kinase [EC:2.7.2.7] D P3962_07095 phosphate butyryltransferase K00634 ptb; phosphate butyryltransferase [EC:2.3.1.19] D P3962_13170 acetaldehyde dehydrogenase (acetylating) K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10] D P3962_05625 MaoC family dehydratase K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] D P3962_09560 sodium ion-translocating decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D P3962_10370 sodium ion-translocating decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D P3962_08235 DUF2118 domain-containing protein K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma D P3962_10375 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma D P3962_09515 pflB; formate C-acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D P3962_00910 nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D P3962_14730 nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D P3962_03925 2-oxoacid:acceptor oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D P3962_05065 2-oxoacid:acceptor oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D P3962_07075 3-methyl-2-oxobutanoate dehydrogenase subunit VorB K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D P3962_03930 2-oxoacid:ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D P3962_05070 2-oxoacid:ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D P3962_07070 thiamine pyrophosphate-dependent enzyme K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] C 00660 C5-Branched dibasic acid metabolism [PATH:tis00660] D P3962_02615 methylaspartate ammonia-lyase K04835 mal; methylaspartate ammonia-lyase [EC:4.3.1.2] D P3962_02610 methylaspartate mutase subunit E K19268 glmE; methylaspartate mutase epsilon subunit [EC:5.4.99.1] D P3962_02600 glmS; methylaspartate mutase subunit S K01846 glmS; methylaspartate mutase sigma subunit [EC:5.4.99.1] C 00562 Inositol phosphate metabolism [PATH:tis00562] D P3962_01875 zinc dependent phospholipase C family protein K01114 plc; phospholipase C [EC:3.1.4.3] D P3962_06080 iolG; inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D P3962_06120 iolG; inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D P3962_06085 iolE; myo-inosose-2 dehydratase K03335 iolE; inosose dehydratase [EC:4.2.1.44] D P3962_06090 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22] D P3962_06095 5-deoxy-glucuronate isomerase K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30] D P3962_06540 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:tis00190] D P3962_05170 nuoE; NADH-quinone oxidoreductase subunit NuoE K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D P3962_13735 nuoE; NADH-quinone oxidoreductase subunit NuoE K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D P3962_05165 nuoF; NADH-quinone oxidoreductase subunit NuoF K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D P3962_10305 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region domain-containing protein K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D P3962_13730 NADH-quinone oxidoreductase subunit NuoF K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D P3962_10300 NADH-dependent [FeFe] hydrogenase, group A6 K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D P3962_10475 atpA; F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D P3962_10465 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D P3962_10470 atpG; ATP synthase F1 subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D P3962_10480 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D P3962_10460 atpC; ATP synthase F1 subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D P3962_10495 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D P3962_10485 atpF; F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D P3962_10490 atpE; ATP synthase F0 subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D P3962_12125 V-type ATP synthase subunit A K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1] D P3962_12130 V-type ATP synthase subunit B K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B D P3962_12115 V-type ATP synthase subunit C K02119 ATPVC; V/A-type H+/Na+-transporting ATPase subunit C D P3962_12135 V-type ATP synthase subunit D K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D D P3962_12110 V-type ATP synthase subunit E K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E D P3962_12120 V-type ATP synthase subunit F K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F D P3962_12095 hypothetical protein K02107 ATPVG; V/A-type H+/Na+-transporting ATPase subunit G/H D P3962_12100 V-type ATP synthase subunit I K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I D P3962_12105 V-type ATP synthase subunit K K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K D P3962_14195 putative manganese-dependent inorganic diphosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation by Calvin cycle [PATH:tis00710] D P3962_06110 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D P3962_06545 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D P3962_06115 type II glyceraldehyde-3-phosphate dehydrogenase K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59] D P3962_06550 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59] D P3962_05360 fba; class II fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D P3962_00770 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D P3962_06100 transketolase family protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D P3962_06105 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D P3962_06175 RpiB/LacA/LacB family sugar-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D P3962_06180 RpiB/LacA/LacB family sugar-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D P3962_13295 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D P3962_06540 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D P3962_04390 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D P3962_00990 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D P3962_01920 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] C 00720 Other carbon fixation pathways [PATH:tis00720] D P3962_00910 nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D P3962_14730 nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D P3962_01920 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D P3962_13075 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1] D P3962_01450 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1] D P3962_02620 fumarate hydratase K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D P3962_02625 Fe-S-containing hydro-lyase K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D P3962_05620 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D P3962_03925 2-oxoacid:acceptor oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D P3962_05065 2-oxoacid:acceptor oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D P3962_07075 3-methyl-2-oxobutanoate dehydrogenase subunit VorB K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D P3962_03930 2-oxoacid:ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D P3962_05070 2-oxoacid:ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D P3962_07070 thiamine pyrophosphate-dependent enzyme K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D P3962_03935 2-oxoacid:acceptor oxidoreductase family protein K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3] D P3962_07065 2-oxoacid:acceptor oxidoreductase family protein K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3] D P3962_03920 4Fe-4S binding protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3] D P3962_07080 4Fe-4S dicluster domain-containing protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3] D P3962_08250 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D P3962_08265 methylmalonyl-CoA mutase family protein K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D P3962_08260 cobalamin B12-binding domain-containing protein K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D P3962_14065 formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D P3962_03315 bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D P3962_11265 cyclodeaminase/cyclohydrolase family protein K01500 fchA; methenyltetrahydrofolate cyclohydrolase [EC:3.5.4.9] D P3962_01825 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4] D P3962_03425 phosphate propanoyltransferase K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8] D P3962_04325 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00680 Methane metabolism [PATH:tis00680] D P3962_13625 glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D P3962_05160 molybdopterin-dependent oxidoreductase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D P3962_01825 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4] D P3962_04550 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D P3962_05430 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D P3962_10025 D-2-hydroxyacid dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D P3962_06530 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D P3962_05360 fba; class II fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D P3962_00970 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D P3962_13240 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D P3962_04325 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D P3962_06535 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D P3962_10060 hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D P3962_12490 hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] C 00910 Nitrogen metabolism [PATH:tis00910] D P3962_08680 ammonia-forming cytochrome c nitrite reductase subunit c552 K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2] D P3962_10795 hcp; hydroxylamine reductase K05601 hcp; hydroxylamine reductase [EC:1.7.99.1] D P3962_07055 nitronate monooxygenase family protein K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D P3962_13495 Glu/Leu/Phe/Val dehydrogenase K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D P3962_14085 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D P3962_01720 NAD(P)-dependent oxidoreductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D P3962_11765 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] C 00920 Sulfur metabolism [PATH:tis00920] D P3962_04145 bifunctional oligoribonuclease/PAP phosphatase NrnA K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] D P3962_05105 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D P3962_05110 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:tis00061] D P3962_04305 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D P3962_07025 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D P3962_07035 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D P3962_05640 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D P3962_07045 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D P3962_07020 fabF; beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D P3962_07030 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D P3962_07050 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D P3962_07040 fabK; enoyl-[acyl-carrier-protein] reductase FabK K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:tis00071] D P3962_05620 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D P3962_13625 glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D P3962_00140 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00073 Cutin, suberine and wax biosynthesis C 00074 Mycolic acid biosynthesis D P3962_04305 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D P3962_07025 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D P3962_07035 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:tis00561] D P3962_10065 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D P3962_00140 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D P3962_08905 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30] D P3962_11695 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30] D P3962_04310 plsX; phosphate acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D P3962_04535 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D P3962_10455 glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D P3962_03955 lysophospholipid acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D P3962_03085 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D P3962_02355 YegS/Rv2252/BmrU family lipid kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107] D P3962_14735 glycosyltransferase family 4 protein K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337] D P3962_12430 LTA synthase family protein K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20] C 00564 Glycerophospholipid metabolism [PATH:tis00564] D P3962_04530 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D P3962_11670 NAD(P)/FAD-dependent oxidoreductase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D P3962_04535 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D P3962_10455 glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D P3962_03955 lysophospholipid acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D P3962_03085 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D P3962_02355 YegS/Rv2252/BmrU family lipid kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107] D P3962_01875 zinc dependent phospholipase C family protein K01114 plc; phospholipase C [EC:3.1.4.3] D P3962_04185 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D P3962_04085 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D P3962_06940 cls; cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D P3962_14215 cls; cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D P3962_04980 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41] C 00565 Ether lipid metabolism D P3962_01875 zinc dependent phospholipase C family protein K01114 plc; phospholipase C [EC:3.1.4.3] C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:tis00230] D P3962_03865 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D P3962_05245 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D P3962_08360 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D P3962_13950 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D P3962_13970 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D P3962_13960 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D P3962_13940 phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] D P3962_13955 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D P3962_13945 purE; 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D P3962_13935 phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D P3962_13965 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D P3962_09405 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D P3962_12935 5'-nucleotidase C-terminal domain-containing protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D P3962_11190 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D P3962_11490 purine-nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D P3962_13105 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D P3962_08790 pgeF; peptidoglycan editing factor PgeF K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D P3962_04930 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D P3962_08275 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D P3962_13610 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D P3962_14535 rdgB; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D P3962_11990 xanthine phosphoribosyltransferase K03816 xpt; xanthine phosphoribosyltransferase [EC:2.4.2.22] D P3962_14060 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D P3962_08900 guaD; guanine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3] D P3962_04450 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D P3962_13180 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D P3962_02075 anaerobic ribonucleoside triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D P3962_03130 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1] D P3962_04585 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D P3962_05200 class IV adenylate cyclase K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1] D P3962_08830 ade; adenine deaminase K01486 ade; adenine deaminase [EC:3.5.4.2] D P3962_11260 ade; adenine deaminase K01486 ade; adenine deaminase [EC:3.5.4.2] D P3962_12930 5'-nucleotidase C-terminal domain-containing protein K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D P3962_07725 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D P3962_08880 pyrC; dihydroorotase K01466 allB; allantoinase [EC:3.5.2.5] D P3962_11765 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] C 00240 Pyrimidine metabolism [PATH:tis00240] D P3962_10450 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D P3962_10445 aspartate carbamoyltransferase regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D P3962_10440 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D P3962_12600 D-aminoacylase K01465 URA4; dihydroorotase [EC:3.5.2.3] D P3962_10530 dihydroorotate dehydrogenase K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14] D P3962_10535 dihydroorotate dehydrogenase electron transfer subunit K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit D P3962_10525 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D P3962_10540 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D P3962_04200 pyrH; UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D P3962_02740 Maf family protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D P3962_13215 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D P3962_03950 cmk; (d)CMP kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D P3962_02150 nucleoside kinase K00876 udk; uridine kinase [EC:2.7.1.48] D P3962_03680 udk; uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48] D P3962_08075 AAA family ATPase K00876 udk; uridine kinase [EC:2.7.1.48] D P3962_12935 5'-nucleotidase C-terminal domain-containing protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D P3962_11190 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D P3962_13300 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D P3962_04470 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D P3962_12930 5'-nucleotidase C-terminal domain-containing protein K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D P3962_05315 carbohydrate kinase family protein K16328 psuK; pseudouridine kinase [EC:2.7.1.83] D P3962_05320 pseudouridine-5'-phosphate glycosidase K16329 psuG; pseudouridylate synthase [EC:4.2.1.70] D P3962_03875 pyrimidine-nucleoside phosphorylase K00756 pdp; pyrimidine-nucleoside phosphorylase [EC:2.4.2.2] D P3962_03095 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D P3962_02075 anaerobic ribonucleoside triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D P3962_13180 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D P3962_08930 cytidine/deoxycytidylate deaminase family protein K01493 comEB; dCMP deaminase [EC:3.5.4.12] D P3962_12235 tmk; dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D P3962_04110 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D P3962_06710 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21] D P3962_07935 thyX; FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D P3962_08665 Zn-dependent hydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:tis00250] D P3962_00780 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D P3962_04030 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D P3962_11485 amino acid racemase K01779 racD; aspartate racemase [EC:5.1.1.13] D P3962_02540 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D P3962_04660 asnA; aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] D P3962_08595 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D P3962_13195 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D P3962_10605 aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1] D P3962_10450 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D P3962_10445 aspartate carbamoyltransferase regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D P3962_01720 NAD(P)-dependent oxidoreductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D P3962_13495 Glu/Leu/Phe/Val dehydrogenase K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D P3962_14085 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D P3962_13565 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D P3962_09400 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D P3962_13950 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:tis00260] D P3962_05540 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D P3962_11895 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D P3962_05535 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D P3962_11900 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D P3962_08450 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D P3962_11905 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D P3962_11915 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D P3962_11910 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D P3962_12695 GntG family PLP-dependent aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D P3962_14740 aminotransferase class V-fold PLP-dependent enzyme K01620 ltaE; threonine aldolase [EC:4.1.2.48] D P3962_04550 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D P3962_05430 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D P3962_10025 D-2-hydroxyacid dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D P3962_10065 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D P3962_06535 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D P3962_10060 hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D P3962_12490 hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D P3962_06675 glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D P3962_07595 gcvPA; aminomethyl-transferring glycine dehydrogenase subunit GcvPA K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D P3962_07590 gcvPB; aminomethyl-transferring glycine dehydrogenase subunit GcvPB K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D P3962_07605 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D P3962_07585 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D P3962_11125 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D P3962_07600 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein D P3962_05235 sdaAB; L-serine ammonia-lyase, iron-sulfur-dependent subunit beta K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D P3962_05240 sdaAA; L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D P3962_12595 D-serine ammonia-lyase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18] D P3962_05465 M24 family metallopeptidase K15783 doeA; ectoine hydrolase [EC:3.5.4.44] C 00270 Cysteine and methionine metabolism [PATH:tis00270] D P3962_05105 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D P3962_05110 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D P3962_13360 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D P3962_09835 speD; adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D P3962_12860 speD; adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D P3962_12855 speE; polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16] D P3962_08790 pgeF; peptidoglycan editing factor PgeF K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D P3962_05115 amidohydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28] D P3962_02200 s-methyl-5-thioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23] D P3962_12915 megL; methionine gamma-lyase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11] D P3962_02085 GAF domain-containing protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14] D P3962_02895 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D P3962_05540 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D P3962_11895 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D P3962_05535 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D P3962_11900 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D P3962_08450 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D P3962_11905 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D P3962_11915 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D P3962_06930 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D P3962_10750 glutamate-cysteine ligase family protein K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D P3962_00780 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D P3962_04030 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D P3962_05235 sdaAB; L-serine ammonia-lyase, iron-sulfur-dependent subunit beta K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D P3962_05240 sdaAA; L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D P3962_10060 hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D P3962_12490 hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] C 00280 Valine, leucine and isoleucine degradation [PATH:tis00280] D P3962_06930 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D P3962_09635 Glu/Leu/Phe/Val dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] D P3962_07585 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D P3962_11125 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D P3962_08250 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D P3962_08260 cobalamin B12-binding domain-containing protein K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D P3962_08265 methylmalonyl-CoA mutase family protein K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D P3962_00140 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D P3962_05620 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:tis00290] D P3962_13145 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D P3962_06930 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D P3962_09635 Glu/Leu/Phe/Val dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] C 00300 Lysine biosynthesis [PATH:tis00300] D P3962_08450 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D P3962_11905 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D P3962_05540 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D P3962_11895 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D P3962_05535 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D P3962_11900 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D P3962_05530 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D P3962_10035 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D P3962_12505 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D P3962_04860 pepV; dipeptidase PepV K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D P3962_13995 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D P3962_03475 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D P3962_09410 murE; UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D P3962_06510 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:tis00310] D P3962_07585 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D P3962_11125 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D P3962_05620 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D P3962_00140 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00220 Arginine biosynthesis [PATH:tis00220] D P3962_08940 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1] D P3962_13565 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D P3962_14085 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D P3962_11765 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D P3962_13495 Glu/Leu/Phe/Val dehydrogenase K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D P3962_00780 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D P3962_04030 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00330 Arginine and proline metabolism [PATH:tis00330] D P3962_12230 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K01585 speA; arginine decarboxylase [EC:4.1.1.19] D P3962_12855 speE; polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16] D P3962_09835 speD; adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D P3962_12860 speD; adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D P3962_00140 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D P3962_01200 GNAT family N-acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57] D P3962_06000 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D P3962_08940 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1] D P3962_00780 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D P3962_04030 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism [PATH:tis00340] D P3962_00515 aromatic amino acid lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D P3962_00525 aromatic amino acid ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D P3962_00535 hutH; histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D P3962_12770 aromatic amino acid ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D P3962_00485 urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49] D P3962_00480 hutI; imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7] D P3962_00475 ftcD; glutamate formimidoyltransferase K00603 fctD; glutamate formiminotransferase / 5-formyltetrahydrofolate cyclo-ligase [EC:2.1.2.5 6.3.3.2] D P3962_11985 ftcD; glutamate formimidoyltransferase K00603 fctD; glutamate formiminotransferase / 5-formyltetrahydrofolate cyclo-ligase [EC:2.1.2.5 6.3.3.2] D P3962_14425 ftcD; glutamate formimidoyltransferase K00603 fctD; glutamate formiminotransferase / 5-formyltetrahydrofolate cyclo-ligase [EC:2.1.2.5 6.3.3.2] D P3962_00140 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00350 Tyrosine metabolism [PATH:tis00350] D P3962_00780 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D P3962_04030 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D P3962_13625 glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D P3962_14550 tyrosine phenol-lyase K01668 E4.1.99.2; tyrosine phenol-lyase [EC:4.1.99.2] C 00360 Phenylalanine metabolism [PATH:tis00360] D P3962_05615 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D P3962_00780 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D P3962_04030 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D P3962_06000 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D P3962_09215 aldolase catalytic domain-containing protein K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] D P3962_13175 dmpG; 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] D P3962_13170 acetaldehyde dehydrogenase (acetylating) K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10] C 00380 Tryptophan metabolism [PATH:tis00380] D P3962_07585 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D P3962_11125 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D P3962_05620 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D P3962_11730 tryptophanase K01667 tnaA; tryptophanase [EC:4.1.99.1] D P3962_00140 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D P3962_06000 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D P3962_08600 catalase K03781 katE; catalase [EC:1.11.1.6] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:tis00400] D P3962_03765 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D P3962_14380 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D P3962_14385 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D P3962_11875 chorismate mutase K04516 AROA1; chorismate mutase [EC:5.4.99.5] D P3962_00780 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D P3962_04030 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:tis00410] D P3962_00140 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D P3962_08665 Zn-dependent hydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] C 00430 Taurine and hypotaurine metabolism [PATH:tis00430] D P3962_08595 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D P3962_13195 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D P3962_13495 Glu/Leu/Phe/Val dehydrogenase K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D P3962_03425 phosphate propanoyltransferase K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8] D P3962_04325 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism C 00450 Selenocompound metabolism [PATH:tis00450] D P3962_12915 megL; methionine gamma-lyase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11] D P3962_10005 cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D P3962_02875 selA; L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D P3962_12330 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:tis00460] D P3962_02540 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D P3962_04660 asnA; aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] D P3962_04550 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D P3962_05430 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:tis00470] D P3962_00710 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D P3962_06505 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D P3962_10210 ATP-grasp domain-containing protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D P3962_13565 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D P3962_11600 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D P3962_13185 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D P3962_03485 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D P3962_11485 amino acid racemase K01779 racD; aspartate racemase [EC:5.1.1.13] D P3962_12595 D-serine ammonia-lyase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18] D P3962_13995 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D P3962_03555 orr; ornithine racemase Orr K21898 orr; ornithine racemase [EC:5.1.1.12] D P3962_03560 orr; ornithine racemase Orr K21898 orr; ornithine racemase [EC:5.1.1.12] D P3962_06630 diaminopimelate epimerase K01780 cntK; histidine racemase [EC:5.1.1.24] C 00480 Glutathione metabolism [PATH:tis00480] D P3962_10750 glutamate-cysteine ligase family protein K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D P3962_02100 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D P3962_05355 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D P3962_12855 speE; polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis [PATH:tis00540] D P3962_09205 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D P3962_10160 SIS domain-containing protein K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] C 00542 O-Antigen repeat unit biosynthesis [PATH:tis00542] D P3962_13305 MraY family glycosyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:tis00541] D P3962_12870 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D P3962_06285 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D P3962_09245 rfbF; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D P3962_09240 rfbG; CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45] D P3962_09250 rfbH; lipopolysaccharide biosynthesis protein RfbH K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1] D P3962_10145 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D P3962_08365 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D P3962_13310 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D P3962_00730 nucleotide sugar dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] C 00550 Peptidoglycan biosynthesis [PATH:tis00550] D P3962_03500 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D P3962_13320 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D P3962_00915 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D P3962_08375 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D P3962_03485 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D P3962_03475 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D P3962_09410 murE; UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D P3962_06505 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D P3962_10210 ATP-grasp domain-containing protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D P3962_06510 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D P3962_04190 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D P3962_12635 undecaprenyl diphosphate synthase family protein K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D P3962_00200 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D P3962_06765 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D P3962_03480 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D P3962_03495 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D P3962_03360 PBP1A family penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D P3962_03685 penicillin-binding transpeptidase domain-containing protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D P3962_03470 penicillin-binding transpeptidase domain-containing protein K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) D P3962_02300 penicillin-binding transpeptidase domain-containing protein K05364 pbpA; penicillin-binding protein A D P3962_02860 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D P3962_03880 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D P3962_03900 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D P3962_11745 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] C 00552 Teichoic acid biosynthesis [PATH:tis00552] D P3962_00200 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D P3962_06765 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D P3962_13305 MraY family glycosyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D P3962_00765 WecB/TagA/CpsF family glycosyltransferase K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] D P3962_08380 LCP family protein K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] D P3962_10290 LCP family protein K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] D P3962_10610 LCP family protein K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] D P3962_12430 LTA synthase family protein K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20] D P3962_14735 glycosyltransferase family 4 protein K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium D P3962_13305 MraY family glycosyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00543 Exopolysaccharide biosynthesis [PATH:tis00543] D P3962_13305 MraY family glycosyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D P3962_01595 MBOAT family O-acyltransferase K19294 algI; alginate O-acetyltransferase complex protein AlgI D P3962_09825 MBOAT family O-acyltransferase K19294 algI; alginate O-acetyltransferase complex protein AlgI D P3962_05105 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:tis00730] D P3962_11865 thiD; bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D P3962_05475 ThiF family adenylyltransferase K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73] D P3962_02545 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D P3962_03615 nifS; cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D P3962_02550 thiI; tRNA 4-thiouridine(8) synthase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D P3962_11855 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D P3962_11860 thiE; thiamine phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D P3962_01345 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D P3962_04395 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D P3962_11530 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D P3962_04380 thiamine diphosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2] D P3962_07725 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:tis00740] D P3962_04135 bifunctional riboflavin kinase/FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D P3962_00060 nfsA; oxygen-insensitive NADPH nitroreductase K19285 nfrA1; FMN reductase (NADPH) [EC:1.5.1.38] D P3962_14815 nfsA; oxygen-insensitive NADPH nitroreductase K19285 nfrA1; FMN reductase (NADPH) [EC:1.5.1.38] D P3962_14880 nitroreductase family protein K19286 nfrA2; FMN reductase [NAD(P)H] [EC:1.5.1.39] D P3962_11855 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D P3962_03865 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D P3962_08870 UbiX family flavin prenyltransferase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism D P3962_11910 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:tis00760] D P3962_10320 aspartate dehydrogenase K06989 nadX; aspartate dehydrogenase [EC:1.4.1.21] D P3962_11770 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D P3962_11490 purine-nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D P3962_13105 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D P3962_12935 5'-nucleotidase C-terminal domain-containing protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D P3962_11190 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D P3962_02835 nadD; nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D P3962_13455 nadE; NAD(+) synthase K01916 nadE; NAD+ synthase [EC:6.3.1.5] D P3962_08060 NAD-dependent protein deacylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D P3962_02310 NAD(+)/NADH kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D P3962_08820 FAD binding domain-containing protein K20445 ndhF; nicotinate dehydrogenase FAD-subunit [EC:1.17.1.5] D P3962_00500 (2Fe-2S)-binding protein K20446 ndhS; nicotinate dehydrogenase small FeS subunit [EC:1.17.1.5] D P3962_08810 molybdopterin-dependent oxidoreductase K20447 ndhL; nicotinate dehydrogenase large molybdopterin subunit [EC:1.17.1.5] D P3962_08805 molybdopterin-dependent oxidoreductase K20448 ndhM; nicotinate dehydrogenase medium molybdopterin subunit [EC:1.17.1.5] C 00770 Pantothenate and CoA biosynthesis [PATH:tis00770] D P3962_13145 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D P3962_13150 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D P3962_13155 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D P3962_08220 type III pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D P3962_04440 coaBC; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D P3962_04345 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D P3962_02680 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D P3962_06930 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D P3962_08665 Zn-dependent hydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D P3962_00140 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00780 Biotin metabolism [PATH:tis00780] D P3962_07020 fabF; beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D P3962_07030 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D P3962_07050 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D P3962_08335 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D P3962_14370 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:tis00785] D P3962_14225 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D P3962_02590 lipoate--protein ligase K03800 lplA; lipoate---protein ligase [EC:6.3.1.20] D P3962_14220 lipoate--protein ligase K03800 lplA; lipoate---protein ligase [EC:6.3.1.20] D P3962_07585 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D P3962_11125 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D P3962_11110 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D P3962_11115 alpha-ketoacid dehydrogenase subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D P3962_11120 dihydrolipoamide acetyltransferase family protein K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D P3962_07595 gcvPA; aminomethyl-transferring glycine dehydrogenase subunit GcvPA K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D P3962_07590 gcvPB; aminomethyl-transferring glycine dehydrogenase subunit GcvPB K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D P3962_07605 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D P3962_07600 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:tis00790] D P3962_11530 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D P3962_11955 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D P3962_04970 bifunctional folylpolyglutamate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D P3962_10625 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D P3962_10665 MogA/MoaB family molybdenum cofactor biosynthesis protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D P3962_10630 molybdopterin biosynthesis protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D P3962_10635 molybdopterin molybdotransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D P3962_08795 nucleotidyltransferase family protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76] C 00670 One carbon pool by folate [PATH:tis00670] D P3962_11955 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D P3962_14065 formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D P3962_03315 bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D P3962_11265 cyclodeaminase/cyclohydrolase family protein K01500 fchA; methenyltetrahydrofolate cyclohydrolase [EC:3.5.4.9] D P3962_04550 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D P3962_05430 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D P3962_13960 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D P3962_13965 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D P3962_00475 ftcD; glutamate formimidoyltransferase K00603 fctD; glutamate formiminotransferase / 5-formyltetrahydrofolate cyclo-ligase [EC:2.1.2.5 6.3.3.2] D P3962_11985 ftcD; glutamate formimidoyltransferase K00603 fctD; glutamate formiminotransferase / 5-formyltetrahydrofolate cyclo-ligase [EC:2.1.2.5 6.3.3.2] D P3962_14425 ftcD; glutamate formimidoyltransferase K00603 fctD; glutamate formiminotransferase / 5-formyltetrahydrofolate cyclo-ligase [EC:2.1.2.5 6.3.3.2] D P3962_04425 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D P3962_07605 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D P3962_07935 thyX; FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D P3962_00805 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:tis00860] D P3962_01940 flavodoxin domain-containing protein K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3] D P3962_01965 radical SAM protein K22227 ahbD; AdoMet-dependent heme synthase [EC:1.3.98.6] D P3962_06835 sirohydrochlorin cobaltochelatase K02190 cbiK; sirohydrochlorin cobaltochelatase [EC:4.99.1.3] D P3962_06880 precorrin-2 C(20)-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151] D P3962_06800 cobJ; precorrin-3B C(17)-methyltransferase K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272] D P3962_06810 cobM; precorrin-4 C(11)-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271] D P3962_06805 cbiG; cobalt-precorrin 5A hydrolase K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12] D P3962_06795 cobK; precorrin-6A reductase K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106] D P3962_06825 cbiD; cobalt-precorrin-5B (C(1))-methyltransferase CbiD K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195] D P3962_06815 cbiT; precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT K02191 cbiT; cobalt-precorrin-6B (C15)-methyltransferase [EC:2.1.1.196] D P3962_06820 cbiE; precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE K03399 cbiE; cobalt-precorrin-7 (C5)-methyltransferase [EC:2.1.1.289] D P3962_06830 precorrin-8X methylmutase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60] D P3962_08395 cob(I)yrinic acid a,c-diamide adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D P3962_08470 cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D P3962_06890 cobyric acid synthase K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D P3962_06885 cbiB; adenosylcobinamide-phosphate synthase CbiB K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D P3962_05495 cobU; bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] D P3962_05490 cobS; adenosylcobinamide-GDP ribazoletransferase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D P3962_09650 cobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] D P3962_05485 histidine phosphatase family protein K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73] D P3962_06860 histidinol-phosphate transaminase K04720 cobD; threonine-phosphate decarboxylase [EC:4.1.1.81] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:tis00130] D P3962_08870 UbiX family flavin prenyltransferase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D P3962_12075 wrbA; NAD(P)H:quinone oxidoreductase K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:tis00900] D P3962_07965 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D P3962_12395 ispE; 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D P3962_07960 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D P3962_04175 ispG; flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D P3962_03960 bifunctional 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D P3962_05620 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D P3962_08870 UbiX family flavin prenyltransferase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D P3962_10285 fni; type 2 isopentenyl-diphosphate Delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] D P3962_03840 polyprenyl synthetase family protein K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D P3962_04190 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D P3962_12635 undecaprenyl diphosphate synthase family protein K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation D P3962_00140 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00907 Pinene, camphor and geraniol degradation C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D P3962_00770 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D P3962_06100 transketolase family protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D P3962_06105 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis C 01054 Nonribosomal peptide structures [PATH:tis01054] D P3962_11485 amino acid racemase K01779 racD; aspartate racemase [EC:5.1.1.13] C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis [PATH:tis00311] D P3962_08775 linear amide C-N hydrolase K24041 yxeI; penicillin V amidase [EC:3.5.1.11] D P3962_05745 class A beta-lactamase-related serine hydrolase K17836 penP; beta-lactamase class A [EC:3.5.2.6] C 00332 Carbapenem biosynthesis C 00261 Monobactam biosynthesis [PATH:tis00261] D P3962_05540 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D P3962_11895 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D P3962_05535 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D P3962_11900 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D P3962_05530 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D P3962_10035 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D P3962_12505 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:tis00521] D P3962_02210 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D P3962_10155 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D P3962_05245 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D P3962_06080 iolG; inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D P3962_06120 iolG; inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D P3962_02210 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D P3962_10155 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis C 00401 Novobiocin biosynthesis D P3962_00780 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D P3962_04030 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis C 00333 Prodigiosin biosynthesis D P3962_07035 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D P3962_07030 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D P3962_04305 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D P3962_07025 acpP; acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites D P3962_13360 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] C 00997 Biosynthesis of various other secondary metabolites D P3962_03555 orr; ornithine racemase Orr K21898 orr; ornithine racemase [EC:5.1.1.12] D P3962_03560 orr; ornithine racemase Orr K21898 orr; ornithine racemase [EC:5.1.1.12] B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:tis00362] D P3962_11920 VOC family protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2] D P3962_09215 aldolase catalytic domain-containing protein K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] D P3962_13175 dmpG; 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] D P3962_13170 acetaldehyde dehydrogenase (acetylating) K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10] D P3962_09560 sodium ion-translocating decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D P3962_10370 sodium ion-translocating decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D P3962_08235 DUF2118 domain-containing protein K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma D P3962_10375 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma D P3962_05615 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D P3962_05620 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation [PATH:tis00627] D P3962_06000 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D P3962_08870 UbiX family flavin prenyltransferase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation [PATH:tis00625] D P3962_13625 glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D P3962_00140 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D P3962_06400 YjjG family noncanonical pyrimidine nucleotidase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:tis00361] D P3962_11920 VOC family protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2] D P3962_06400 YjjG family noncanonical pyrimidine nucleotidase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] C 00623 Toluene degradation C 00622 Xylene degradation [PATH:tis00622] D P3962_11920 VOC family protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2] D P3962_09215 aldolase catalytic domain-containing protein K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] D P3962_13175 dmpG; 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] D P3962_13170 acetaldehyde dehydrogenase (acetylating) K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10] C 00633 Nitrotoluene degradation D P3962_01825 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4] C 00642 Ethylbenzene degradation C 00643 Styrene degradation [PATH:tis00643] D P3962_06000 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D P3962_11920 VOC family protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2] C 00791 Atrazine degradation C 00930 Caprolactam degradation C 00363 Bisphenol degradation C 00621 Dioxin degradation [PATH:tis00621] D P3962_09215 aldolase catalytic domain-containing protein K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] D P3962_13175 dmpG; 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] D P3962_13170 acetaldehyde dehydrogenase (acetylating) K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10] C 00626 Naphthalene degradation [PATH:tis00626] D P3962_13625 glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:tis03020] D P3962_07870 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D P3962_07865 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D P3962_07690 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D P3962_04445 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors D P3962_10105 ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:tis03010] D P3962_03960 bifunctional 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D P3962_04210 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D P3962_07800 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D P3962_05130 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D P3962_07695 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D P3962_07745 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D P3962_11545 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D P3962_07850 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D P3962_07760 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D P3962_07655 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D P3962_07835 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D P3962_07700 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D P3962_07855 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D P3962_07705 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D P3962_07765 type Z 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D P3962_04130 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D P3962_04270 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D P3962_07785 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D P3962_11555 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D P3962_07810 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D P3962_02965 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D P3962_03040 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D P3962_07885 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D P3962_07815 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D P3962_07830 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D P3962_07825 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D P3962_07770 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D P3962_07755 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D P3962_07875 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D P3962_11570 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D P3962_07880 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D P3962_07890 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D P3962_07660 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D P3962_07780 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D P3962_07735 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D P3962_07795 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D P3962_07685 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D P3962_07750 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D P3962_04250 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D P3962_04845 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D P3962_02805 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D P3962_07805 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D P3962_07820 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D P3962_07775 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D P3962_12215 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D P3962_02815 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D P3962_04370 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D P3962_07790 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D P3962_07740 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D P3962_13250 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D P3962_04315 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D P3962_07905 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D P3962_11325 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D P3962_04850 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D P3962_07710 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D P3962_07860 ribosomal L7Ae/L30e/S12e/Gadd45 family protein K07590 RP-L7A; large subunit ribosomal protein L7A D P3962_08190 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D P3962_06395 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D P3962_08120 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D P3962_02400 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:tis00970] D P3962_07950 gltX; glutamate--tRNA ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D P3962_14495 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D P3962_14500 gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D P3962_14490 gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D P3962_02950 DHHA1 domain-containing protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D P3962_03630 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D P3962_04565 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D P3962_03575 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D P3962_03110 glyQ; glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D P3962_03115 glyS; glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D P3962_04870 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D P3962_11705 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D P3962_02875 selA; L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D P3962_07945 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D P3962_12330 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D P3962_04425 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D P3962_04975 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D P3962_03580 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D P3962_08085 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D P3962_08200 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D P3962_04800 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D P3962_07955 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D P3962_04875 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D P3962_04825 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D P3962_04820 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D P3962_08410 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D P3962_04990 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:tis03060] D P3962_07730 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D P3962_07900 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D P3962_06525 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D P3962_04610 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D P3962_11310 YidC/Oxa1 family membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase D P3962_13415 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D P3962_04275 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D P3962_04285 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D P3962_10085 arsA; arsenical pump-driving ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D P3962_11625 arsA; arsenical pump-driving ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D P3962_05390 twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D P3962_05410 tatA; twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D P3962_08980 tatA; twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D P3962_08975 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC D P3962_02980 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D P3962_08040 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D P3962_04480 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D P3962_11085 signal peptidase I K13280 SEC11; signal peptidase I [EC:3.4.21.89] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:tis04122] D P3962_02545 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D P3962_03615 nifS; cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D P3962_06995 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D P3962_09610 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D P3962_10625 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D P3962_10665 MogA/MoaB family molybdenum cofactor biosynthesis protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D P3962_02550 thiI; tRNA 4-thiouridine(8) synthase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D P3962_05435 thiS; sulfur carrier protein ThiS K03154 thiS; sulfur carrier protein D P3962_05475 ThiF family adenylyltransferase K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73] C 03050 Proteasome C 03018 RNA degradation [PATH:tis03018] D P3962_06530 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D P3962_04125 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D P3962_01035 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D P3962_06500 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D P3962_05310 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D P3962_10560 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D P3962_00330 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D P3962_13245 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D P3962_04050 rny; ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-] D P3962_03660 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] D P3962_00970 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D P3962_03010 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D P3962_13555 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D P3962_04005 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein B B 09124 Replication and repair C 03030 DNA replication [PATH:tis03030] D P3962_00960 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D P3962_05025 polC; DNA polymerase III subunit alpha K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D P3962_11830 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D P3962_12250 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D P3962_02960 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D P3962_11335 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D P3962_11575 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D P3962_03135 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D P3962_11550 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D P3962_04240 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D P3962_02675 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D P3962_14485 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:tis03410] D P3962_13515 DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] D P3962_06645 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D P3962_10725 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D P3962_08045 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D P3962_01570 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D P3962_01375 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D P3962_11000 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D P3962_08425 deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D P3962_02675 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D P3962_04590 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D P3962_14485 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:tis03420] D P3962_08350 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D P3962_00845 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A D P3962_00840 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B D P3962_00895 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C D P3962_08020 GIY-YIG nuclease family protein K03703 uvrC; excinuclease ABC subunit C D P3962_06770 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D P3962_02675 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D P3962_14485 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D P3962_10105 ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] C 03430 Mismatch repair [PATH:tis03430] D P3962_03990 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D P3962_04805 endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D P3962_03995 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL D P3962_06770 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D P3962_03830 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D P3962_03835 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D P3962_04590 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D P3962_11550 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D P3962_00960 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D P3962_05025 polC; DNA polymerase III subunit alpha K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D P3962_11335 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D P3962_11830 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D P3962_02960 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D P3962_12250 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D P3962_14485 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D P3962_05810 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] C 03440 Homologous recombination [PATH:tis03440] D P3962_04590 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D P3962_11550 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D P3962_11345 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF D P3962_03105 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D P3962_11840 recR; recombination mediator RecR K06187 recR; recombination protein RecR D P3962_04075 recA; recombinase RecA K03553 recA; recombination protein RecA D P3962_02675 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D P3962_04640 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA D P3962_04635 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D P3962_04645 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D P3962_04355 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D P3962_13380 ATP-dependent RecD-like DNA helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D P3962_00960 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D P3962_05025 polC; DNA polymerase III subunit alpha K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D P3962_11335 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D P3962_11830 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D P3962_02960 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D P3962_12250 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D P3962_04435 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining [PATH:tis03450] D P3962_13070 Ku protein K10979 ku; DNA end-binding protein Ku D P3962_01725 ligD; DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03272 Virion - Hepatitis viruses C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:tis02010] D P3962_10650 substrate-binding domain-containing protein K05772 tupA; tungstate transport system substrate-binding protein D P3962_10645 ABC transporter permease K05773 tupB; tungstate transport system permease protein D P3962_10640 ATP-binding cassette domain-containing protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D P3962_00190 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein D P3962_00185 modB; molybdate ABC transporter permease subunit K02018 modB; molybdate transport system permease protein D P3962_00180 ATP-binding cassette domain-containing protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D P3962_02575 spermidine/putrescine ABC transporter substrate-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D P3962_02570 ABC transporter permease K11070 potC; spermidine/putrescine transport system permease protein D P3962_02565 ABC transporter permease K11071 potB; spermidine/putrescine transport system permease protein D P3962_02560 ABC transporter ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D P3962_09965 glycine betaine/L-proline ABC transporter ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D P3962_01895 glycine betaine ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein D P3962_01885 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D P3962_01890 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D P3962_01880 ABC transporter ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D P3962_05605 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D P3962_09455 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D P3962_09475 ABC transporter substrate-binding protein K10236 thuE; trehalose/maltose transport system substrate-binding protein D P3962_09470 ABC transporter permease subunit K10237 thuF; trehalose/maltose transport system permease protein D P3962_09465 carbohydrate ABC transporter permease K10238 thuG; trehalose/maltose transport system permease protein D P3962_05585 ABC transporter substrate-binding protein K10240 cebE; cellobiose transport system substrate-binding protein D P3962_05590 sugar ABC transporter permease K10241 cebF; cellobiose transport system permease protein D P3962_05595 carbohydrate ABC transporter permease K10242 cebG; cellobiose transport system permease protein D P3962_08995 chvE; sugar ABC transporter substrate-binding protein K10546 chvE; putative multiple sugar transport system substrate-binding protein D P3962_08985 gguB; sugar ABC transporter permease K10547 gguB; putative multiple sugar transport system permease protein D P3962_08990 gguA; sugar ABC transporter ATP-binding protein K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D P3962_05325 BMP family protein K07335 bmpA; basic membrane protein A and related proteins D P3962_06580 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins D P3962_05335 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein D P3962_06570 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein D P3962_05330 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein D P3962_06565 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein D P3962_05340 ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D P3962_06575 ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D P3962_07550 rbsB; ribose ABC transporter substrate-binding protein RbsB K10439 rbsB; ribose transport system substrate-binding protein D P3962_10165 ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein D P3962_12830 ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein D P3962_07565 rbsC; ribose ABC transporter permease K10440 rbsC; ribose transport system permease protein D P3962_10170 ABC transporter permease K10440 rbsC; ribose transport system permease protein D P3962_12840 ABC transporter permease K10440 rbsC; ribose transport system permease protein D P3962_07570 gguA; sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D P3962_10175 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D P3962_10180 ATP-binding cassette domain-containing protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D P3962_12835 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D P3962_07560 rbsD; D-ribose pyranase K06726 rbsD; D-ribose pyranase [EC:5.4.99.62] D P3962_06140 sugar ABC transporter substrate-binding protein K17213 K17213; inositol transport system substrate-binding protein D P3962_06130 ABC transporter permease K17214 K17214; inositol transport system permease protein D P3962_06135 sugar ABC transporter ATP-binding protein K17215 K17215; inositol transport system ATP-binding protein D P3962_11495 substrate-binding domain-containing protein K02040 pstS; phosphate transport system substrate-binding protein D P3962_11500 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein D P3962_11505 pstA; phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein D P3962_11510 pstB; phosphate ABC transporter ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D P3962_14115 transporter substrate-binding domain-containing protein K02424 tcyA; L-cystine transport system substrate-binding protein D P3962_14120 amino acid ABC transporter permease K10009 tcyB; L-cystine transport system permease protein D P3962_14125 amino acid ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1] D P3962_00870 transporter substrate-binding domain-containing protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein D P3962_05780 transporter substrate-binding domain-containing protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein D P3962_00875 amino acid ABC transporter permease K17077 artQ; arginine/lysine/histidine transport system permease protein D P3962_05775 amino acid ABC transporter permease K17077 artQ; arginine/lysine/histidine transport system permease protein D P3962_00880 amino acid ABC transporter ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1] D P3962_05770 amino acid ABC transporter ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1] D P3962_09590 amino acid ABC transporter permease K17073 lysX1; putative lysine transport system substrate-binding protein D P3962_09595 transporter substrate-binding domain-containing protein K17073 lysX1; putative lysine transport system substrate-binding protein D P3962_09585 amino acid ABC transporter ATP-binding protein K17076 lysY; putative lysine transport system ATP-binding protein D P3962_06205 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D P3962_09500 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D P3962_12950 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D P3962_06200 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D P3962_09495 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D P3962_12955 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D P3962_06195 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D P3962_09490 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D P3962_12960 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D P3962_06190 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D P3962_09485 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D P3962_12965 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D P3962_06185 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D P3962_09480 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D P3962_12970 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D P3962_00675 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D P3962_01500 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D P3962_14110 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D P3962_00680 ABC transporter permease K02072 metI; D-methionine transport system permease protein D P3962_01495 ABC transporter permease K02072 metI; D-methionine transport system permease protein D P3962_14105 ABC transporter permease K02072 metI; D-methionine transport system permease protein D P3962_00685 methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D P3962_01490 ATP-binding cassette domain-containing protein K02071 metN; D-methionine transport system ATP-binding protein D P3962_14100 ATP-binding cassette domain-containing protein K02071 metN; D-methionine transport system ATP-binding protein D P3962_02155 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D P3962_02160 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D P3962_13000 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D P3962_02165 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D P3962_02170 ABC transporter ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D P3962_12990 ABC transporter ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D P3962_02175 ATP-binding cassette domain-containing protein K10823 oppF; oligopeptide transport system ATP-binding protein D P3962_12985 ATP-binding cassette domain-containing protein K10823 oppF; oligopeptide transport system ATP-binding protein D P3962_13005 peptide ABC transporter substrate-binding protein K16199 dppE; dipeptide transport system substrate-binding protein D P3962_12995 ABC transporter permease K16201 dppC; dipeptide transport system permease protein D P3962_05875 iron-siderophore ABC transporter substrate-binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D P3962_05880 iron ABC transporter permease K23228 fhuB; ferric hydroxamate transport system permease protein D P3962_14600 metal ABC transporter substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein D P3962_14610 metal ABC transporter permease K09816 znuB; zinc transport system permease protein D P3962_14605 metal ABC transporter ATP-binding protein K11607 sitB; manganese/iron transport system ATP-binding protein D P3962_06850 energy-coupling factor ABC transporter substrate-binding protein K02009 cbiN; cobalt/nickel transport protein D P3962_06855 energy-coupling factor ABC transporter permease K02007 cbiM; cobalt/nickel transport system permease protein D P3962_06845 cbiQ; cobalt ECF transporter T component CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D P3962_06840 ATP-binding cassette domain-containing protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein D P3962_08330 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component D P3962_07670 energy-coupling factor transporter transmembrane component T K16785 ecfT; energy-coupling factor transport system permease protein D P3962_07680 energy-coupling factor transporter ATPase K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D P3962_07675 energy-coupling factor transporter ATPase K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D P3962_01770 ABC transporter permease K19084 braE; bacitracin transport system permease protein D P3962_01765 ABC transporter ATP-binding protein K19083 braD; bacitracin transport system ATP-binding protein D P3962_00815 ftsX; permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein D P3962_06230 permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein D P3962_00810 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D P3962_06225 ATP-binding cassette domain-containing protein K09812 ftsE; cell division transport system ATP-binding protein D P3962_01740 ABC transporter ATP-binding protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump D P3962_01745 ABC transporter ATP-binding protein K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump D P3962_01520 ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D P3962_09625 ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D P3962_01515 ABC transporter ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D P3962_09620 ABC transporter ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D P3962_00325 abc-f; ABC-F type ribosomal protection protein K18231 msr; macrolide transport system ATP-binding/permease protein D P3962_13775 abc-f; ABC-F type ribosomal protection protein K18231 msr; macrolide transport system ATP-binding/permease protein C 02060 Phosphotransferase system (PTS) [PATH:tis02060] D P3962_11825 ptsP; phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D P3962_00950 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr D P3962_01420 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr D P3962_13825 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr D P3962_01405 PTS sugar transporter subunit IIA K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197] D P3962_01395 PTS mannitol transporter subunit IICBA K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] D P3962_13840 PTS sugar transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D P3962_13830 PTS sugar transporter subunit IIC K02795 manY; mannose PTS system EIIC component D P3962_13835 PTS system mannose/fructose/sorbose family transporter subunit IID K02796 manZ; mannose PTS system EIID component D P3962_01325 PTS sugar transporter subunit IIA K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-] D P3962_01310 agaB; PTS galactosamine transporter subunit IIB K10984 agaB; galactosamine PTS system EIIB component [EC:2.7.1.-] D P3962_01315 agaC; PTS galactosamine transporter subunit IIC K10985 agaC; galactosamine PTS system EIIC component D P3962_01320 agaD; PTS galactosamine transporter subunit IID K10986 agaD; galactosamine PTS system EIID component D P3962_05015 PTS transporter subunit IIC K02775 gatC; galactitol PTS system EIIC component D P3962_01410 pfkB; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] C 03070 Bacterial secretion system [PATH:tis03070] D P3962_07900 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D P3962_06525 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D P3962_07730 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D P3962_04610 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D P3962_11310 YidC/Oxa1 family membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase D P3962_13415 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D P3962_04285 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D P3962_04275 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D P3962_05390 twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D P3962_05410 tatA; twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D P3962_08980 tatA; twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D P3962_08975 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC B B 09132 Signal transduction C 02020 Two-component system [PATH:tis02020] D P3962_11520 response regulator transcription factor K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D P3962_11530 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D P3962_11495 substrate-binding domain-containing protein K02040 pstS; phosphate transport system substrate-binding protein D P3962_09200 flagellin K02406 fliC; flagellin D P3962_09050 FliA/WhiG family RNA polymerase sigma factor K02405 fliA; RNA polymerase sigma factor FliA D P3962_09110 MotA/TolQ/ExbB proton channel family protein K02556 motA; chemotaxis protein MotA D P3962_10045 tripartite tricarboxylate transporter permease K07793 tctA; putative tricarboxylic transport membrane protein D P3962_12515 tripartite tricarboxylate transporter TctB family protein K07794 tctB; putative tricarboxylic transport membrane protein D P3962_09030 tripartite tricarboxylate transporter substrate binding protein K07795 tctC; putative tricarboxylic transport membrane protein D P3962_09695 response regulator transcription factor K07775 resD; two-component system, OmpR family, response regulator ResD D P3962_11220 ATP-binding protein K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3] D P3962_11225 response regulator K07668 vicR; two-component system, OmpR family, response regulator VicR D P3962_11330 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D P3962_01770 ABC transporter permease K19084 braE; bacitracin transport system permease protein D P3962_01765 ABC transporter ATP-binding protein K19083 braD; bacitracin transport system ATP-binding protein D P3962_01760 sensor histidine kinase K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3] D P3962_01755 response regulator transcription factor K19082 braR; two-component system, OmpR family, response regulator protein BraR/BceR D P3962_14325 vanR; VanR-ABDEGLN family response regulator transcription factor K18349 vanRC; two-component system, OmpR family, response regulator VanR D P3962_10565 ATP-binding protein K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3] D P3962_10570 response regulator transcription factor K18941 arlR; two-component system, OmpR family, response regulator ArlR D P3962_03860 spo0A; sporulation transcription factor Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A D P3962_02645 [citrate (pro-3S)-lyase] ligase K01910 citC; [citrate (pro-3S)-lyase] ligase [EC:6.2.1.22] D P3962_02630 citD; citrate lyase acyl carrier protein K01646 citD; citrate lyase subunit gamma (acyl carrier protein) D P3962_10355 citD; citrate lyase acyl carrier protein K01646 citD; citrate lyase subunit gamma (acyl carrier protein) D P3962_10410 citD; citrate lyase acyl carrier protein K01646 citD; citrate lyase subunit gamma (acyl carrier protein) D P3962_02635 CoA ester lyase K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D P3962_10350 citE; citrate (pro-3S)-lyase subunit beta K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D P3962_10405 citE; citrate (pro-3S)-lyase subunit beta K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D P3962_02640 citF; citrate lyase subunit alpha K01643 citF; citrate lyase subunit alpha / citrate CoA-transferase [EC:2.8.3.10] D P3962_10345 citF; citrate lyase subunit alpha K01643 citF; citrate lyase subunit alpha / citrate CoA-transferase [EC:2.8.3.10] D P3962_10400 citF; citrate lyase subunit alpha K01643 citF; citrate lyase subunit alpha / citrate CoA-transferase [EC:2.8.3.10] D P3962_10340 citX; citrate lyase holo-[acyl-carrier protein] synthase K05964 citX; holo-ACP synthase [EC:2.7.7.61] D P3962_10395 citG; triphosphoribosyl-dephospho-CoA synthase CitG K05966 citG; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52] D P3962_10600 NADP-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D P3962_05365 accessory gene regulator B family protein K07813 agrB; accessory gene regulator B D P3962_09275 csrA; carbon storage regulator CsrA K03563 csrA; carbon storage regulator D P3962_11100 response regulator transcription factor K07694 vraR; two-component system, NarL family, vancomycin resistance associated response regulator VraR D P3962_14085 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D P3962_05620 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D P3962_06560 rpoN; RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor D P3962_09335 protein-glutamate O-methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D P3962_01065 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_09355 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_09365 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_09370 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_09375 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_09380 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_09385 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_10800 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_11135 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_12325 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_12920 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_13575 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_13770 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_01070 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D P3962_09315 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D P3962_09350 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D P3962_09330 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D P3962_09320 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D P3962_09395 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D P3962_09340 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D P3962_12725 dctP; TRAP transporter substrate-binding protein DctP K11688 dctP; C4-dicarboxylate-binding protein DctP D P3962_13135 TRAP transporter small permease K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D P3962_05455 TRAP transporter large permease K11690 dctM; C4-dicarboxylate transporter, DctM subunit D P3962_12745 TRAP transporter large permease K11690 dctM; C4-dicarboxylate transporter, DctM subunit D P3962_13140 TRAP transporter large permease K11690 dctM; C4-dicarboxylate transporter, DctM subunit D P3962_13565 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D P3962_10190 response regulator K07720 yesN; two-component system, response regulator YesN D P3962_13310 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D P3962_00730 nucleotide sugar dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] D P3962_09300 flgM; flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis D P3962_08940 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:tis02024] D P3962_04005 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D P3962_06205 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D P3962_09500 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D P3962_12950 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D P3962_06200 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D P3962_09495 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D P3962_12955 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D P3962_06195 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D P3962_09490 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D P3962_12960 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D P3962_06190 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D P3962_09485 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D P3962_12965 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D P3962_06185 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D P3962_09480 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D P3962_12970 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D P3962_05365 accessory gene regulator B family protein K07813 agrB; accessory gene regulator B D P3962_02155 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D P3962_02160 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D P3962_13000 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D P3962_02165 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D P3962_02170 ABC transporter ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D P3962_12990 ABC transporter ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D P3962_02175 ATP-binding cassette domain-containing protein K10823 oppF; oligopeptide transport system ATP-binding protein D P3962_12985 ATP-binding cassette domain-containing protein K10823 oppF; oligopeptide transport system ATP-binding protein D P3962_01660 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D P3962_02690 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D P3962_01650 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D P3962_01655 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D P3962_01665 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D P3962_01670 ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D P3962_11310 YidC/Oxa1 family membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase D P3962_07900 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D P3962_06525 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D P3962_07730 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D P3962_04610 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D P3962_13415 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D P3962_04285 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D P3962_04275 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D P3962_03860 spo0A; sporulation transcription factor Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A D P3962_01875 zinc dependent phospholipase C family protein K01114 plc; phospholipase C [EC:3.1.4.3] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:tis02030] D P3962_01065 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_09355 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_09365 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_09370 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_09375 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_09380 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_09385 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_10800 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_11135 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_12325 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_12920 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_13575 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_13770 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_07550 rbsB; ribose ABC transporter substrate-binding protein RbsB K10439 rbsB; ribose transport system substrate-binding protein D P3962_10165 ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein D P3962_12830 ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein D P3962_09330 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D P3962_01070 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D P3962_09315 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D P3962_09350 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D P3962_09320 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D P3962_09395 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D P3962_09325 chemotaxis protein CheC K03410 cheC; chemotaxis protein CheC D P3962_09340 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D P3962_09345 chemotaxis protein CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D P3962_09335 protein-glutamate O-methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D P3962_09155 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D P3962_09310 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D P3962_09305 fliY; flagellar motor switch phosphatase FliY K02417 fliN; flagellar motor switch protein FliN D P3962_09110 MotA/TolQ/ExbB proton channel family protein K02556 motA; chemotaxis protein MotA D P3962_09105 flagellar motor protein MotB K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:tis02040] D P3962_09165 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D P3962_09160 fliF; flagellar basal-body MS-ring/collar protein FliF K02409 fliF; flagellar M-ring protein FliF D P3962_09155 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D P3962_09145 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D P3962_09140 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D P3962_09310 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D P3962_09305 fliY; flagellar motor switch phosphatase FliY K02417 fliN; flagellar motor switch protein FliN D P3962_09090 fliP; flagellar type III secretion system pore protein FliP K02419 fliP; flagellar biosynthesis protein FliP D P3962_09085 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D P3962_09080 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D P3962_09070 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D P3962_09075 flhB; flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D P3962_09175 flgB; flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D P3962_09170 flgC; flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D P3962_09130 flagellar hook capping FlgD N-terminal domain-containing protein K02389 flgD; flagellar basal-body rod modification protein FlgD D P3962_09120 flagellar hook-basal body complex protein K02390 flgE; flagellar hook protein FlgE D P3962_09040 flagellar hook-basal body protein K02391 flgF; flagellar basal-body rod protein FlgF D P3962_09035 flagellar hook-basal body protein K02392 flgG; flagellar basal-body rod protein FlgG D P3962_09290 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D P3962_09285 flgL; flagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL D P3962_09200 flagellin K02406 fliC; flagellin D P3962_09190 fliD; flagellar filament capping protein FliD K02407 fliD; flagellar hook-associated protein 2 D P3962_09185 fliS; flagellar export chaperone FliS K02422 fliS; flagellar secretion chaperone FliS D P3962_09110 MotA/TolQ/ExbB proton channel family protein K02556 motA; chemotaxis protein MotA D P3962_09105 flagellar motor protein MotB K02557 motB; chemotaxis protein MotB D P3962_09300 flgM; flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D P3962_14115 transporter substrate-binding domain-containing protein K02424 tcyA; L-cystine transport system substrate-binding protein D P3962_03140 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D P3962_06560 rpoN; RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor D P3962_09050 FliA/WhiG family RNA polymerase sigma factor K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D P3962_06530 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism [PATH:tis04980] D P3962_08395 cob(I)yrinic acid a,c-diamide adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D P3962_08255 meaB; methylmalonyl Co-A mutase-associated GTPase MeaB K07588 MMAA; GTPase [EC:3.6.5.-] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:tis01501] D P3962_02205 nagZ; beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D P3962_02155 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D P3962_02160 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D P3962_13000 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D P3962_02165 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D P3962_02170 ABC transporter ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D P3962_12990 ABC transporter ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D P3962_02175 ATP-binding cassette domain-containing protein K10823 oppF; oligopeptide transport system ATP-binding protein D P3962_12985 ATP-binding cassette domain-containing protein K10823 oppF; oligopeptide transport system ATP-binding protein D P3962_05745 class A beta-lactamase-related serine hydrolase K17836 penP; beta-lactamase class A [EC:3.5.2.6] D P3962_03360 PBP1A family penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D P3962_03685 penicillin-binding transpeptidase domain-containing protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:tis01502] D P3962_14325 vanR; VanR-ABDEGLN family response regulator transcription factor K18349 vanRC; two-component system, OmpR family, response regulator VanR D P3962_06505 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D P3962_10210 ATP-grasp domain-containing protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D P3962_00710 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D P3962_06510 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D P3962_03480 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D P3962_03495 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:tis01503] D P3962_01585 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D P3962_07615 cwlD; N-acetylmuramoyl-L-alanine amidase CwlD K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D P3962_08565 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:tis01000] C 01001 Protein kinases [BR:tis01001] D P3962_04400 pknB; Stk1 family PASTA domain-containing Ser/Thr kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D P3962_06955 ATP-binding protein K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D P3962_11370 ATP-binding protein K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D P3962_11220 ATP-binding protein K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3] D P3962_01760 sensor histidine kinase K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3] D P3962_10565 ATP-binding protein K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3] D P3962_09330 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:tis01009] D P3962_00970 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D P3962_11465 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG D P3962_04405 Stp1/IreP family PP2C-type Ser/Thr phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16] C 01002 Peptidases and inhibitors [BR:tis01002] D P3962_04480 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D P3962_03720 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D P3962_02970 gpr; GPR endopeptidase K06012 gpr; spore protease [EC:3.4.24.78] D P3962_03530 sigma-E processing peptidase SpoIIGA K06383 spoIIGA; stage II sporulation protein GA (sporulation sigma-E factor processing peptidase) [EC:3.4.23.-] D P3962_14060 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D P3962_10715 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein K07010 K07010; putative glutamine amidotransferase D P3962_13950 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D P3962_09400 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D P3962_08775 linear amide C-N hydrolase K24041 yxeI; penicillin V amidase [EC:3.5.1.11] D P3962_09750 class D sortase K07284 srtA; sortase A [EC:3.4.22.70] D P3962_05365 accessory gene regulator B family protein K07813 agrB; accessory gene regulator B D P3962_04925 type II CAAX endopeptidase family protein K07052 K07052; CAAX protease family protein D P3962_06380 type II CAAX endopeptidase family protein K07052 K07052; CAAX protease family protein D P3962_01225 CPBP family intramembrane metalloprotease K07052 K07052; CAAX protease family protein D P3962_02305 pepF; oligoendopeptidase F K08602 pepF; oligoendopeptidase F [EC:3.4.24.-] D P3962_05735 dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D P3962_12085 dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D P3962_04860 pepV; dipeptidase PepV K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D P3962_06925 pepT; peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D P3962_02100 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D P3962_05355 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D P3962_05765 amidohydrolase K12941 abgB; aminobenzoyl-glutamate utilization protein B D P3962_06750 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D P3962_00890 aminopeptidase P family protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D P3962_06070 aminopeptidase P family protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D P3962_09530 aminopeptidase K19689 ampS; aminopeptidase [EC:3.4.11.-] D P3962_10195 aminopeptidase K19689 ampS; aminopeptidase [EC:3.4.11.-] D P3962_00595 iadA; beta-aspartyl-peptidase K01305 iadA; beta-aspartyl-dipeptidase (metallo-type) [EC:3.4.19.-] D P3962_04690 iadA; beta-aspartyl-peptidase K01305 iadA; beta-aspartyl-dipeptidase (metallo-type) [EC:3.4.19.-] D P3962_02330 ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D P3962_04865 AAA family ATPase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D P3962_08270 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D P3962_10900 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D P3962_03975 M42 family metallopeptidase K20608 tet; tetrahedral aminopeptidase [EC:3.4.11.-] D P3962_04180 rseP; RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D P3962_05125 M55 family metallopeptidase K16203 dppA1; D-amino peptidase [EC:3.4.11.-] D P3962_07115 PrsW family glutamic-type intramembrane protease K24131 prsW; protease PrsW [EC:3.4.-.-] D P3962_02860 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D P3962_03880 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D P3962_03900 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D P3962_11745 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D P3962_06980 clpP; ATP-dependent Clp endopeptidase proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D P3962_06970 lon; endopeptidase La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D P3962_04015 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D P3962_02980 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D P3962_08040 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D P3962_11085 signal peptidase I K13280 SEC11; signal peptidase I [EC:3.4.21.89] D P3962_00825 S41 family peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D P3962_12435 S41 family peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D P3962_04685 cyanophycinase K13282 cphB; cyanophycinase [EC:3.4.15.6] D P3962_03855 spoIVB; SpoIVB peptidase K06399 spoIVB; stage IV sporulation protein B [EC:3.4.21.116] D P3962_03675 U32 family peptidase K08303 prtC; U32 family peptidase [EC:3.4.-.-] D P3962_04810 DUF3656 domain-containing protein K08303 prtC; U32 family peptidase [EC:3.4.-.-] D P3962_05185 TldD/PmbA family protein K03592 pmbA; PmbA protein D P3962_05190 TldD/PmbA family protein K03568 tldD; TldD protein C 01003 Glycosyltransferases [BR:tis01003] D P3962_14735 glycosyltransferase family 4 protein K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337] D P3962_12310 glgA; glycogen synthase GlgA K00703 glgA; starch synthase [EC:2.4.1.21] D P3962_03360 PBP1A family penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D P3962_06265 pelF; GT4 family glycosyltransferase PelF K21011 pelF; polysaccharide biosynthesis protein PelF D P3962_00765 WecB/TagA/CpsF family glycosyltransferase K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] D P3962_13305 MraY family glycosyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 01005 Lipopolysaccharide biosynthesis proteins [BR:tis01005] D P3962_09205 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D P3962_10160 SIS domain-containing protein K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D P3962_13305 MraY family glycosyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:tis01011] D P3962_03500 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D P3962_13320 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D P3962_00915 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D P3962_08375 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D P3962_03485 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D P3962_03475 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D P3962_09410 murE; UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D P3962_06505 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D P3962_10210 ATP-grasp domain-containing protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D P3962_00710 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D P3962_11600 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D P3962_13185 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D P3962_03480 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D P3962_03495 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D P3962_00200 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D P3962_06765 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D P3962_12980 murJ; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase D P3962_03360 PBP1A family penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D P3962_03685 penicillin-binding transpeptidase domain-containing protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D P3962_03470 penicillin-binding transpeptidase domain-containing protein K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) D P3962_02300 penicillin-binding transpeptidase domain-containing protein K05364 pbpA; penicillin-binding protein A D P3962_02860 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D P3962_03880 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D P3962_03900 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D P3962_11745 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D P3962_09750 class D sortase K07284 srtA; sortase A [EC:3.4.22.70] D P3962_02685 lytic transglycosylase domain-containing protein K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D P3962_02660 mltG; endolytic transglycosylase MltG K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D P3962_12420 sleB; spore cortex-lytic enzyme K27245 sleB; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D P3962_13325 spoIID; stage II sporulation protein D K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29] D P3962_01585 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D P3962_07615 cwlD; N-acetylmuramoyl-L-alanine amidase CwlD K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D P3962_08565 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:tis01004] D P3962_07035 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D P3962_05640 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D P3962_07045 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D P3962_07020 fabF; beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D P3962_07030 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D P3962_07050 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D P3962_07040 fabK; enoyl-[acyl-carrier-protein] reductase FabK K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9] D P3962_05645 AMP-binding protein K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D P3962_04310 plsX; phosphate acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D P3962_04535 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D P3962_10455 glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D P3962_03955 lysophospholipid acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins [BR:tis01008] D P3962_11485 amino acid racemase K01779 racD; aspartate racemase [EC:5.1.1.13] C 01006 Prenyltransferases [BR:tis01006] D P3962_03840 polyprenyl synthetase family protein K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D P3962_04190 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D P3962_12635 undecaprenyl diphosphate synthase family protein K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D P3962_04000 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] C 01007 Amino acid related enzymes [BR:tis01007] D P3962_07950 gltX; glutamate--tRNA ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D P3962_08410 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D P3962_04990 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D P3962_07945 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D P3962_04800 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D P3962_12330 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D P3962_08085 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D P3962_04975 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D P3962_03580 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D P3962_08200 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D P3962_04565 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D P3962_03575 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D P3962_04875 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D P3962_03110 glyQ; glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D P3962_03115 glyS; glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D P3962_11705 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D P3962_07955 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D P3962_04870 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D P3962_02950 DHHA1 domain-containing protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D P3962_03630 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D P3962_04825 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D P3962_04820 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D P3962_00780 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D P3962_04030 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D P3962_06675 glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D P3962_06930 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:tis00194] D P3962_10460 atpC; ATP synthase F1 subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D P3962_10465 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D P3962_10470 atpG; ATP synthase F1 subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D P3962_10475 atpA; F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D P3962_10480 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D P3962_10485 atpF; F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D P3962_10490 atpE; ATP synthase F0 subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D P3962_10495 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:tis03000] D P3962_02895 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D P3962_09785 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator D P3962_09850 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator D P3962_09940 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator D P3962_13335 spoIIID; sporulation transcriptional regulator SpoIIID K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D D P3962_03120 helix-turn-helix transcriptional regulator K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator D P3962_02370 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D P3962_05580 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D P3962_06210 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D P3962_07580 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D P3962_01300 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D P3962_13875 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D P3962_12715 FCD domain-containing protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D P3962_01785 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D P3962_03655 Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D P3962_14590 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D P3962_14755 Fur family transcriptional regulator K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator D P3962_13125 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D P3962_09505 Crp/Fnr family transcriptional regulator K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D P3962_10430 Crp/Fnr family transcriptional regulator K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D P3962_03610 Rrf2 family transcriptional regulator K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor D P3962_10095 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D P3962_11615 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D P3962_11645 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D P3962_13975 metalloregulator ArsR/SmtB family transcription factor K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D P3962_05155 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator D P3962_06690 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator D P3962_14045 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator D P3962_01705 metal-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D P3962_08335 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D P3962_14370 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D P3962_10070 sugar diacid recognition domain-containing protein K02647 cdaR; carbohydrate diacid regulator D P3962_00470 sigma 54-interacting transcriptional regulator K06714 rocR; arginine utilization regulatory protein D P3962_12760 sigma 54-interacting transcriptional regulator K06714 rocR; arginine utilization regulatory protein D P3962_00195 LysR family transcriptional regulator K02019 modE; molybdate transport system regulatory protein D P3962_13490 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor D P3962_04215 codY; GTP-sensing pleiotropic transcriptional regulator CodY K03706 codY; transcriptional pleiotropic repressor D P3962_06440 helix-turn-helix transcriptional regulator K07727 K07727; putative transcriptional regulator D P3962_07425 helix-turn-helix domain-containing protein K07729 K07729; putative transcriptional regulator D P3962_01400 BglG family transcription antiterminator K03483 mtlR; mannitol operon transcriptional activator D P3962_04555 metal-sensitive transcriptional regulator K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D P3962_14155 metal-sensing transcriptional repressor K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D P3962_14175 metal-sensing transcriptional repressor K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D P3962_06010 PucR family transcriptional regulator ligand-binding domain-containing protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein D P3962_08895 PucR family transcriptional regulator ligand-binding domain-containing protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein D P3962_12280 AbrB/MazE/SpoVT family DNA-binding domain-containing protein K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D P3962_08340 spoVT; stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T D P3962_11275 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D P3962_11285 noc; nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D P3962_07975 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D P3962_02270 glycerol-3-phosphate responsive antiterminator K02443 glpP; glycerol uptake operon antiterminator D P3962_11685 glycerol-3-phosphate responsive antiterminator K02443 glpP; glycerol uptake operon antiterminator D P3962_03000 hrcA; heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D P3962_08005 CtsR family transcriptional regulator K03708 ctsR; transcriptional regulator of stress and heat shock response D P3962_12895 sigma 54-interacting transcriptional regulator K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D P3962_06555 sugar-binding domain-containing protein K05311 cggR; central glycolytic genes regulator D P3962_04470 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D P3962_03550 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D P3962_03455 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:tis03021] D P3962_10105 ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D P3962_07690 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D P3962_07870 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D P3962_07865 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D P3962_04445 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D P3962_03140 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D P3962_12020 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D P3962_13590 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D P3962_00150 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D P3962_06670 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D P3962_14460 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D P3962_13890 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D P3962_09670 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D P3962_13815 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D P3962_11375 SigB/SigF/SigG family RNA polymerase sigma factor K03090 sigB; RNA polymerase sigma-B factor D P3962_03330 sigF; RNA polymerase sporulation sigma factor SigF K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D P3962_03535 sigE; RNA polymerase sporulation sigma factor SigE K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D P3962_03540 sigG; RNA polymerase sporulation sigma factor SigG K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D P3962_03690 sigK; RNA polymerase sporulation sigma factor SigK K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D P3962_07920 sigH; RNA polymerase sporulation sigma factor SigH K27000 sigH; RNA polymerase sigma-H factor D P3962_06560 rpoN; RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor D P3962_09050 FliA/WhiG family RNA polymerase sigma factor K02405 fliA; RNA polymerase sigma factor FliA D P3962_04165 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA D P3962_03825 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D P3962_07895 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D P3962_11365 STAS domain-containing protein K04749 rsbV; anti-sigma B factor antagonist D P3962_06955 ATP-binding protein K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D P3962_11370 ATP-binding protein K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D P3962_04560 SoxR reducing system RseC family protein K03803 rseC; sigma-E factor negative regulatory protein RseC D P3962_08205 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D P3962_13245 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:tis03019] D P3962_02800 Rne/Rng family ribonuclease K08301 rng; ribonuclease G [EC:3.1.26.-] D P3962_04300 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D P3962_03660 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] D P3962_04050 rny; ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-] D P3962_06500 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D P3962_01035 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D P3962_05310 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D P3962_10560 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D P3962_00330 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D P3962_06530 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D P3962_04125 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D P3962_13245 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D P3962_00970 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D P3962_03010 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D P3962_13555 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D P3962_04005 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D P3962_09275 csrA; carbon storage regulator CsrA K03563 csrA; carbon storage regulator D P3962_00925 rapZ; RNase adapter RapZ K06958 rapZ; RNase adapter protein RapZ C 03041 Spliceosome C 03011 Ribosome [BR:tis03011] D P3962_03960 bifunctional 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D P3962_04210 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D P3962_07800 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D P3962_05130 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D P3962_07695 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D P3962_07745 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D P3962_11545 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D P3962_07850 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D P3962_07760 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D P3962_07655 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D P3962_07835 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D P3962_07700 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D P3962_07855 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D P3962_07705 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D P3962_07765 type Z 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D P3962_04130 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D P3962_04270 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D P3962_07785 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D P3962_11555 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D P3962_07810 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D P3962_02965 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D P3962_03040 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D P3962_07885 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D P3962_07815 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D P3962_07830 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D P3962_07825 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D P3962_07770 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D P3962_07755 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D P3962_11570 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D P3962_07880 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D P3962_07890 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D P3962_07875 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D P3962_07660 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D P3962_07780 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D P3962_07735 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D P3962_07795 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D P3962_07685 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D P3962_07750 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D P3962_04250 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D P3962_04845 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D P3962_02805 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D P3962_07805 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D P3962_07820 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D P3962_07775 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D P3962_02815 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D P3962_04370 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D P3962_07790 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D P3962_07740 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D P3962_13250 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D P3962_04315 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D P3962_07905 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D P3962_11325 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D P3962_04850 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D P3962_07710 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D P3962_12215 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D P3962_07860 ribosomal L7Ae/L30e/S12e/Gadd45 family protein K07590 RP-L7A; large subunit ribosomal protein L7A D P3962_02400 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D P3962_08190 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D P3962_06395 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D P3962_08120 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA C 03009 Ribosome biogenesis [BR:tis03009] D P3962_04300 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D P3962_03100 era; GTPase Era K03595 era; GTPase D P3962_02820 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] D P3962_04165 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA D P3962_03825 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D P3962_07895 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D P3962_02130 pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D P3962_01620 erm; 23S ribosomal RNA methyltransferase Erm K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D P3962_12345 rsmA; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D P3962_04415 rsmB; 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D P3962_04350 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D P3962_03025 RsmE family RNA methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D P3962_11290 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D P3962_03460 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D P3962_12275 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D P3962_03845 TlyA family RNA methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D P3962_07930 rlmB; 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D P3962_11180 rlmH; 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D P3962_04410 rlmN; 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D P3962_01045 rlmD; 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D P3962_03905 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D P3962_02145 RluA family pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D P3962_02315 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D P3962_04475 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D P3962_13470 rimI; ribosomal protein S18-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D P3962_13800 GNAT family N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D P3962_13765 GNAT family N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] D P3962_04260 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM D P3962_04090 rimO; 30S ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D P3962_03020 prmA; 50S ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D P3962_02800 Rne/Rng family ribonuclease K08301 rng; ribonuclease G [EC:3.1.26.-] D P3962_03645 ruvX; Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D P3962_07940 ribonuclease III domain-containing protein K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-] D P3962_05310 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D P3962_10560 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D P3962_01345 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D P3962_04395 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D P3962_04540 der; ribosome biogenesis GTPase Der K03977 engA; GTPase D P3962_04245 ylqF; ribosome biogenesis GTPase YlqF K14540 rbgA; ribosome biogenesis GTPase A D P3962_03365 hflX; GTPase HflX K03665 hflX; GTPase D P3962_13285 L-threonylcarbamoyladenylate synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D P3962_04585 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D P3962_04150 rbfA; 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A D P3962_04170 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP D P3962_11340 RNA-binding S4 domain-containing protein K14761 rlbA; ribosome-associated protein D P3962_02850 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein D P3962_03080 ybeY; rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor D P3962_02830 yhbY; ribosome assembly RNA-binding protein YhbY K07574 yhbY; RNA-binding protein D P3962_13410 raiA; ribosome-associated translation inhibitor RaiA K05808 hpf; ribosome hibernation promoting factor D P3962_11010 ychF; redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase D P3962_04320 DUF177 domain-containing protein K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:tis03016] D P3962_00545 ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11] D P3962_07010 HD domain-containing protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D P3962_11950 RtcB family protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8] D P3962_07955 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D P3962_08085 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D P3962_03580 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D P3962_12330 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D P3962_04800 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D P3962_08200 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D P3962_04565 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D P3962_02950 DHHA1 domain-containing protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D P3962_03630 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D P3962_03575 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D P3962_04870 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D P3962_11705 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D P3962_07945 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D P3962_04975 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D P3962_04875 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D P3962_04825 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D P3962_04820 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D P3962_08410 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D P3962_04990 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D P3962_04580 dtd; D-aminoacyl-tRNA deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D P3962_03035 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D P3962_14660 SAM-dependent methyltransferase K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] D P3962_07665 truA; tRNA pseudouridine(38-40) synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D P3962_04140 truB; tRNA pseudouridine(55) synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D P3962_02545 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D P3962_03615 nifS; cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D P3962_13285 L-threonylcarbamoyladenylate synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D P3962_04000 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D P3962_11300 mnmE; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D P3962_11295 mnmG; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D P3962_11320 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D P3962_14530 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D P3962_13985 thpR; RNA 2',3'-cyclic phosphodiesterase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D P3962_03110 glyQ; glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D P3962_03115 glyS; glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D P3962_07950 gltX; glutamate--tRNA ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D P3962_01975 ybaK; Cys-tRNA(Pro) deacylase K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-] D P3962_11755 tadA; tRNA adenosine(34) deaminase TadA K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D P3962_08215 dusB; tRNA dihydrouridine synthase DusB K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D P3962_03985 miaB; tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D P3962_03030 mtaB; tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase MtaB K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5] D P3962_04255 trmD; tRNA (guanosine(37)-N1)-methyltransferase TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D P3962_03145 class I SAM-dependent methyltransferase K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217] D P3962_06620 trmL; tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D P3962_04830 RNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family D P3962_06995 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D P3962_09610 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D P3962_04620 queA; tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D P3962_06680 queG; tRNA epoxyqueuosine(34) reductase QueG K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D P3962_01990 mnmH; tRNA 2-selenouridine(34) synthase MnmH K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3] D P3962_04615 tgt; tRNA guanosine(34) transglycosylase Tgt K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D P3962_02550 thiI; tRNA 4-thiouridine(8) synthase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D P3962_08280 tilS; tRNA lysidine(34) synthetase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D P3962_13465 tsaB; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D P3962_13475 tsaD; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D P3962_13460 tsaE; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D P3962_14090 tRNA threonylcarbamoyladenosine dehydratase K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase D P3962_04330 nucleotidyltransferase K27343 tmcAL; tRNAmet cytidine acetate ligase [EC:6.3.1.22] D P3962_06500 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D P3962_04125 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:tis03012] D P3962_04155 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D P3962_04855 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D P3962_08650 ATP-binding cassette domain-containing protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D P3962_13480 ABC-F family ATP-binding cassette domain-containing protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D P3962_04205 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts D P3962_07840 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D P3962_07910 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D P3962_07845 fusA; elongation factor G K02355 fusA; elongation factor G D P3962_08015 fusA; elongation factor G K02355 fusA; elongation factor G D P3962_02880 selB; selenocysteine-specific translation elongation factor K03833 selB; selenocysteine-specific elongation factor D P3962_13275 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D P3962_04195 frr; ribosome recycling factor K02838 frr; ribosome recycling factor D P3962_13260 prmC; peptide chain release factor N(5)-glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D P3962_08355 pth; aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D P3962_07715 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D P3962_03770 efp; elongation factor P K02356 efp; elongation factor P D P3962_13420 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 C 03110 Chaperones and folding catalysts [BR:tis03110] D P3962_11795 clpB; ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D P3962_07990 ATP-dependent Clp protease ATP-binding subunit K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC D P3962_06975 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D P3962_11465 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG D P3962_03010 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D P3962_13555 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D P3962_03015 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D P3962_11790 DnaJ domain-containing protein K05516 cbpA; curved DNA-binding protein D P3962_04905 hslO; Hsp33 family molecular chaperone HslO K04083 hslO; molecular chaperone Hsp33 D P3962_03005 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D P3962_13550 co-chaperone GroES K04078 groES; chaperonin GroES D P3962_02330 ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D P3962_04865 AAA family ATPase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D P3962_08270 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D P3962_10900 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D P3962_10495 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D P3962_06725 peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D P3962_05050 peptidylprolyl isomerase K07533 prsA; foldase protein PrsA [EC:5.2.1.8] D P3962_08345 peptidylprolyl isomerase K07533 prsA; foldase protein PrsA [EC:5.2.1.8] D P3962_02025 peptidylprolyl isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D P3962_06610 thioredoxin domain-containing protein K03671 TXN; thioredoxin C 04131 Membrane trafficking [BR:tis04131] D P3962_13580 SPFH domain-containing protein K07192 FLOT; flotillin D P3962_10085 arsA; arsenical pump-driving ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D P3962_11625 arsA; arsenical pump-driving ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D P3962_00975 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D P3962_11465 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG C 04121 Ubiquitin system C 03051 Proteasome [BR:tis03051] D P3962_11465 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:tis03032] D P3962_02895 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D P3962_08315 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D P3962_11330 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D P3962_11575 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D P3962_11595 ATP-binding protein K02315 dnaC; DNA replication protein DnaC D P3962_03135 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D P3962_11550 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D P3962_00960 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D P3962_05025 polC; DNA polymerase III subunit alpha K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D P3962_11335 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D P3962_02960 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D P3962_12250 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D P3962_11830 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D P3962_04240 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D P3962_02675 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D P3962_14485 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D P3962_05810 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D P3962_11360 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D P3962_11355 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D P3962_04220 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D P3962_00985 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1] D P3962_05020 DNA topoisomerase K03169 topB; DNA topoisomerase III [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:tis03036] D P3962_02895 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D P3962_04300 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D P3962_13580 SPFH domain-containing protein K07192 FLOT; flotillin D P3962_08315 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D P3962_11790 DnaJ domain-containing protein K05516 cbpA; curved DNA-binding protein D P3962_11330 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D P3962_04005 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D P3962_03295 hypothetical protein K03529 smc; chromosome segregation protein D P3962_04290 smc; chromosome segregation protein SMC K03529 smc; chromosome segregation protein D P3962_03890 segregation/condensation protein A K05896 scpA; segregation and condensation protein A D P3962_03895 scpB; SMC-Scp complex subunit ScpB K06024 scpB; segregation and condensation protein B D P3962_00810 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D P3962_06225 ATP-binding cassette domain-containing protein K09812 ftsE; cell division transport system ATP-binding protein D P3962_04095 DNA translocase FtsK 4TM domain-containing protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D P3962_03465 ftsL; cell division protein FtsL K03586 ftsL; cell division protein FtsL D P3962_03505 FtsQ-type POTRA domain-containing protein K03589 ftsQ; cell division protein FtsQ D P3962_03490 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW D P3962_00815 ftsX; permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein D P3962_06230 permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein D P3962_03525 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D P3962_04815 zapA; cell division protein ZapA K09888 zapA; cell division protein ZapA D P3962_01585 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D P3962_07615 cwlD; N-acetylmuramoyl-L-alanine amidase CwlD K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D P3962_08565 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D P3962_02770 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D P3962_02775 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D P3962_02780 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D P3962_04490 DivIVA domain-containing protein K04074 divIVA; cell division initiation protein D P3962_04505 sepF; cell division protein SepF K09772 sepF; cell division inhibitor SepF D P3962_02750 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D P3962_13340 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D P3962_02755 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D P3962_02760 mreD; rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D P3962_06685 rodA; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D P3962_11280 AAA family ATPase K03496 parA; chromosome partitioning protein D P3962_11275 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D P3962_11285 noc; nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D P3962_11295 mnmG; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D P3962_11290 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D P3962_03165 tyrosine-type recombinase/integrase K03733 xerC; integrase/recombinase XerC D P3962_03305 tyrosine-type recombinase/integrase K04763 xerD; integrase/recombinase XerD D P3962_08320 mazG; nucleoside triphosphate pyrophosphohydrolase K02499 yabN; tetrapyrrole methylase family protein / MazG family protein D P3962_12030 Fic family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] D P3962_06965 yihA; ribosome biogenesis GTP-binding protein YihA/YsxC K03978 engB; GTP-binding protein D P3962_00945 whiA; DNA-binding protein WhiA K09762 whiA; cell division protein WhiA C 03400 DNA repair and recombination proteins [BR:tis03400] D P3962_05040 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D P3962_09795 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D P3962_10725 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D P3962_08045 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D P3962_13515 DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] D P3962_06645 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D P3962_10105 ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D P3962_00015 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D P3962_14775 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D P3962_04110 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D P3962_01375 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D P3962_01570 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D P3962_11000 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D P3962_08425 deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D P3962_04590 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D P3962_14485 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D P3962_02675 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D P3962_00845 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A D P3962_00840 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B D P3962_00895 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C D P3962_08020 GIY-YIG nuclease family protein K03703 uvrC; excinuclease ABC subunit C D P3962_06770 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D P3962_07870 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D P3962_07865 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D P3962_07690 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D P3962_04445 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D P3962_08350 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D P3962_03990 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D P3962_04805 endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D P3962_03995 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL D P3962_03830 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D P3962_03835 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D P3962_00960 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D P3962_05025 polC; DNA polymerase III subunit alpha K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D P3962_11335 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D P3962_02960 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D P3962_12250 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D P3962_11830 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D P3962_11550 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D P3962_05810 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D P3962_13380 ATP-dependent RecD-like DNA helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D P3962_04075 recA; recombinase RecA K03553 recA; recombination protein RecA D P3962_04640 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA D P3962_04635 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D P3962_04645 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D P3962_04435 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D P3962_04065 AAA family ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 D P3962_04070 metallophosphoesterase family protein K03547 sbcD; DNA repair protein SbcD/Mre11 D P3962_05220 DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 D P3962_07985 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D P3962_11345 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF D P3962_04355 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D P3962_03105 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D P3962_11840 recR; recombination mediator RecR K06187 recR; recombination protein RecR D P3962_03850 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D P3962_07355 Holliday junction resolvase RecU K03700 recU; recombination protein U D P3962_05940 cas1b; type I-B CRISPR-associated endonuclease Cas1b K15342 cas1; CRISP-associated protein Cas1 D P3962_13070 Ku protein K10979 ku; DNA end-binding protein Ku D P3962_01725 ligD; DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D P3962_11360 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D P3962_11355 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D P3962_04220 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D P3962_08315 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D P3962_00330 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D P3962_14560 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D P3962_09880 DNA methylase K03502 umuC; DNA polymerase V D P3962_04015 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D P3962_02280 RecX family transcriptional regulator K03565 recX; regulatory protein D P3962_13180 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D P3962_04145 bifunctional oligoribonuclease/PAP phosphatase NrnA K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] C 03029 Mitochondrial biogenesis [BR:tis03029] D P3962_04155 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D P3962_04855 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D P3962_04205 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts D P3962_07840 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D P3962_07910 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D P3962_07845 fusA; elongation factor G K02355 fusA; elongation factor G D P3962_08015 fusA; elongation factor G K02355 fusA; elongation factor G D P3962_03100 era; GTPase Era K03595 era; GTPase D P3962_08410 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D P3962_03580 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D P3962_04565 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D P3962_04800 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D P3962_14495 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D P3962_14500 gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D P3962_14490 gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D P3962_11550 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D P3962_03010 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D P3962_03005 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D P3962_13555 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D P3962_13550 co-chaperone GroES K04078 groES; chaperonin GroES D P3962_03015 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D P3962_02545 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D P3962_03615 nifS; cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D P3962_11310 YidC/Oxa1 family membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase D P3962_11465 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:tis02000] D P3962_01740 ABC transporter ATP-binding protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump D P3962_01745 ABC transporter ATP-binding protein K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump D P3962_01520 ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D P3962_09625 ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D P3962_01515 ABC transporter ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D P3962_09620 ABC transporter ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D P3962_02235 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D P3962_07520 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D P3962_07525 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D P3962_00325 abc-f; ABC-F type ribosomal protection protein K18231 msr; macrolide transport system ATP-binding/permease protein D P3962_13775 abc-f; ABC-F type ribosomal protection protein K18231 msr; macrolide transport system ATP-binding/permease protein D P3962_00980 ABC-F family ATP-binding cassette domain-containing protein K15738 uup; ABC transport system ATP-binding/permease protein D P3962_00190 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein D P3962_00185 modB; molybdate ABC transporter permease subunit K02018 modB; molybdate transport system permease protein D P3962_00180 ATP-binding cassette domain-containing protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D P3962_10650 substrate-binding domain-containing protein K05772 tupA; tungstate transport system substrate-binding protein D P3962_10645 ABC transporter permease K05773 tupB; tungstate transport system permease protein D P3962_10640 ATP-binding cassette domain-containing protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D P3962_02575 spermidine/putrescine ABC transporter substrate-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D P3962_02570 ABC transporter permease K11070 potC; spermidine/putrescine transport system permease protein D P3962_02565 ABC transporter permease K11071 potB; spermidine/putrescine transport system permease protein D P3962_02560 ABC transporter ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D P3962_09965 glycine betaine/L-proline ABC transporter ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D P3962_01895 glycine betaine ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein D P3962_01885 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D P3962_01890 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D P3962_01880 ABC transporter ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D P3962_00575 ABC transporter substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D P3962_04985 ABC transporter substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D P3962_00580 ABC transporter permease subunit K02050 ABC.SN.P; NitT/TauT family transport system permease protein D P3962_06720 ABC transporter permease K02050 ABC.SN.P; NitT/TauT family transport system permease protein D P3962_00585 ATP-binding cassette domain-containing protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D P3962_06715 ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D P3962_05605 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D P3962_09455 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D P3962_09475 ABC transporter substrate-binding protein K10236 thuE; trehalose/maltose transport system substrate-binding protein D P3962_09470 ABC transporter permease subunit K10237 thuF; trehalose/maltose transport system permease protein D P3962_09465 carbohydrate ABC transporter permease K10238 thuG; trehalose/maltose transport system permease protein D P3962_05585 ABC transporter substrate-binding protein K10240 cebE; cellobiose transport system substrate-binding protein D P3962_05590 sugar ABC transporter permease K10241 cebF; cellobiose transport system permease protein D P3962_05595 carbohydrate ABC transporter permease K10242 cebG; cellobiose transport system permease protein D P3962_08995 chvE; sugar ABC transporter substrate-binding protein K10546 chvE; putative multiple sugar transport system substrate-binding protein D P3962_08985 gguB; sugar ABC transporter permease K10547 gguB; putative multiple sugar transport system permease protein D P3962_08990 gguA; sugar ABC transporter ATP-binding protein K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D P3962_07550 rbsB; ribose ABC transporter substrate-binding protein RbsB K10439 rbsB; ribose transport system substrate-binding protein D P3962_10165 ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein D P3962_12830 ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein D P3962_07565 rbsC; ribose ABC transporter permease K10440 rbsC; ribose transport system permease protein D P3962_10170 ABC transporter permease K10440 rbsC; ribose transport system permease protein D P3962_12840 ABC transporter permease K10440 rbsC; ribose transport system permease protein D P3962_07570 gguA; sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D P3962_10175 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D P3962_10180 ATP-binding cassette domain-containing protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D P3962_12835 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D P3962_06140 sugar ABC transporter substrate-binding protein K17213 K17213; inositol transport system substrate-binding protein D P3962_06130 ABC transporter permease K17214 K17214; inositol transport system permease protein D P3962_06135 sugar ABC transporter ATP-binding protein K17215 K17215; inositol transport system ATP-binding protein D P3962_05325 BMP family protein K07335 bmpA; basic membrane protein A and related proteins D P3962_06580 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins D P3962_05335 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein D P3962_06570 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein D P3962_05330 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein D P3962_06565 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein D P3962_05340 ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D P3962_06575 ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D P3962_14705 ABC transporter permease K02057 ABC.SS.P; simple sugar transport system permease protein D P3962_14700 sugar ABC transporter ATP-binding protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D P3962_11495 substrate-binding domain-containing protein K02040 pstS; phosphate transport system substrate-binding protein D P3962_11500 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein D P3962_11505 pstA; phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein D P3962_11510 pstB; phosphate ABC transporter ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D P3962_14115 transporter substrate-binding domain-containing protein K02424 tcyA; L-cystine transport system substrate-binding protein D P3962_14120 amino acid ABC transporter permease K10009 tcyB; L-cystine transport system permease protein D P3962_14125 amino acid ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1] D P3962_00870 transporter substrate-binding domain-containing protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein D P3962_05780 transporter substrate-binding domain-containing protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein D P3962_00875 amino acid ABC transporter permease K17077 artQ; arginine/lysine/histidine transport system permease protein D P3962_05775 amino acid ABC transporter permease K17077 artQ; arginine/lysine/histidine transport system permease protein D P3962_00880 amino acid ABC transporter ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1] D P3962_05770 amino acid ABC transporter ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1] D P3962_06205 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D P3962_09500 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D P3962_12950 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D P3962_06200 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D P3962_09495 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D P3962_12955 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D P3962_06195 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D P3962_09490 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D P3962_12960 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D P3962_06190 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D P3962_09485 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D P3962_12965 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D P3962_06185 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D P3962_09480 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D P3962_12970 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D P3962_00675 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D P3962_01500 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D P3962_14110 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D P3962_00680 ABC transporter permease K02072 metI; D-methionine transport system permease protein D P3962_01495 ABC transporter permease K02072 metI; D-methionine transport system permease protein D P3962_14105 ABC transporter permease K02072 metI; D-methionine transport system permease protein D P3962_00685 methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D P3962_01490 ATP-binding cassette domain-containing protein K02071 metN; D-methionine transport system ATP-binding protein D P3962_14100 ATP-binding cassette domain-containing protein K02071 metN; D-methionine transport system ATP-binding protein D P3962_00570 ABC transporter substrate-binding protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein D P3962_00650 ABC transporter substrate-binding protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein D P3962_09580 ABC transporter substrate-binding protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein D P3962_00565 ABC transporter permease K05832 K05832; putative tryptophan/tyrosine transport system permease protein D P3962_00645 ABC transporter permease K05832 K05832; putative tryptophan/tyrosine transport system permease protein D P3962_09575 ABC transporter permease K05832 K05832; putative tryptophan/tyrosine transport system permease protein D P3962_00560 ATP-binding cassette domain-containing protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein D P3962_00640 ATP-binding cassette domain-containing protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein D P3962_09570 ATP-binding cassette domain-containing protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein D P3962_09590 amino acid ABC transporter permease K17073 lysX1; putative lysine transport system substrate-binding protein D P3962_09595 transporter substrate-binding domain-containing protein K17073 lysX1; putative lysine transport system substrate-binding protein D P3962_09585 amino acid ABC transporter ATP-binding protein K17076 lysY; putative lysine transport system ATP-binding protein D P3962_09980 amino acid ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D P3962_09975 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein D P3962_09970 ATP-binding cassette domain-containing protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D P3962_02155 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D P3962_02160 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D P3962_13000 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D P3962_02165 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D P3962_02170 ABC transporter ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D P3962_12990 ABC transporter ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D P3962_02175 ATP-binding cassette domain-containing protein K10823 oppF; oligopeptide transport system ATP-binding protein D P3962_12985 ATP-binding cassette domain-containing protein K10823 oppF; oligopeptide transport system ATP-binding protein D P3962_13005 peptide ABC transporter substrate-binding protein K16199 dppE; dipeptide transport system substrate-binding protein D P3962_12995 ABC transporter permease K16201 dppC; dipeptide transport system permease protein D P3962_01660 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D P3962_02690 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D P3962_01650 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D P3962_01655 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D P3962_01665 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D P3962_01670 ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D P3962_05875 iron-siderophore ABC transporter substrate-binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D P3962_05880 iron ABC transporter permease K23228 fhuB; ferric hydroxamate transport system permease protein D P3962_01545 ABC transporter substrate-binding protein K25308 fhuD; ferric hydroxamate/heme transport system substrate-binding protein D P3962_01550 iron ABC transporter permease K25288 fhuB; ferric hydroxamate/heme transport system permease protein D P3962_01555 iron ABC transporter permease K25289 fhuG; ferric hydroxamate/heme transport system permease protein D P3962_01560 ABC transporter ATP-binding protein K25290 fhuA; ferric hydroxamate/heme transport system ATP-binding protein [EC:7.2.2.16] D P3962_06865 ABC transporter ATP-binding protein K25290 fhuA; ferric hydroxamate/heme transport system ATP-binding protein [EC:7.2.2.16] D P3962_05885 ABC transporter ATP-binding protein K25130 fecE; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-] D P3962_10780 siderophore ABC transporter substrate-binding protein K25282 yclQ; iron-siderophore transport system substrate-binding protein D P3962_10770 iron chelate uptake ABC transporter family permease subunit K25283 yclO; iron-siderophore transport system permease protein D P3962_10775 iron chelate uptake ABC transporter family permease subunit K25284 yclN; iron-siderophore transport system permease protein D P3962_10765 ATP-binding cassette domain-containing protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-] D P3962_05515 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D P3962_06875 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D P3962_05510 iron ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein D P3962_06870 iron ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein D P3962_05505 ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D P3962_06635 cobalamin-binding protein K25034 btuF; cobalamin transport system substrate-binding protein D P3962_14285 ABC transporter substrate-binding protein K25034 btuF; cobalamin transport system substrate-binding protein D P3962_14290 iron ABC transporter permease K25027 btuC; cobalamin transport system permease protein D P3962_14295 ABC transporter ATP-binding protein K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8] D P3962_14600 metal ABC transporter substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein D P3962_14610 metal ABC transporter permease K09816 znuB; zinc transport system permease protein D P3962_14605 metal ABC transporter ATP-binding protein K11607 sitB; manganese/iron transport system ATP-binding protein D P3962_06850 energy-coupling factor ABC transporter substrate-binding protein K02009 cbiN; cobalt/nickel transport protein D P3962_06845 cbiQ; cobalt ECF transporter T component CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D P3962_06855 energy-coupling factor ABC transporter permease K02007 cbiM; cobalt/nickel transport system permease protein D P3962_06840 ATP-binding cassette domain-containing protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein D P3962_08330 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component D P3962_07670 energy-coupling factor transporter transmembrane component T K16785 ecfT; energy-coupling factor transport system permease protein D P3962_07680 energy-coupling factor transporter ATPase K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D P3962_07675 energy-coupling factor transporter ATPase K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D P3962_12780 ABC transporter permease K25181 ybhS; drug efflux transport system permease protein D P3962_12785 ABC transporter ATP-binding protein K25182 ybhF; drug efflux transport system ATP-binding protein D P3962_12790 ABC transporter ATP-binding protein K25182 ybhF; drug efflux transport system ATP-binding protein D P3962_12795 HlyD family efflux transporter periplasmic adaptor subunit K25183 ybhG; membrane fusion protein YbhG D P3962_13670 ABC transporter permease K25142 lnrN; linearmycin/streptolysin S transport system permease protein D P3962_13665 ABC transporter permease K25143 lnrM; linearmycin/streptolysin S transport system permease protein D P3962_13660 ABC transporter ATP-binding protein K25144 lnrL; linearmycin/streptolysin S transport system ATP-binding protein D P3962_01770 ABC transporter permease K19084 braE; bacitracin transport system permease protein D P3962_01765 ABC transporter ATP-binding protein K19083 braD; bacitracin transport system ATP-binding protein D P3962_01435 hypothetical protein K25149 narB; polyether ionophore transport system permease protein D P3962_01430 ABC transporter ATP-binding protein K25150 narA; polyether ionophore transport system ATP-binding protein D P3962_10550 ABC transporter ATP-binding protein K24949 yknY; antimicrobial peptide resistance transport system ATP-binding protein [EC:7.6.2.-] D P3962_00815 ftsX; permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein D P3962_06230 permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein D P3962_00810 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D P3962_06225 ATP-binding cassette domain-containing protein K09812 ftsE; cell division transport system ATP-binding protein D P3962_00355 ABC-2 transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D P3962_01615 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D P3962_05135 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D P3962_09870 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D P3962_00350 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D P3962_00440 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D P3962_00605 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D P3962_01610 ATP-binding cassette domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D P3962_05140 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D P3962_09865 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D P3962_10270 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D P3962_12000 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D P3962_10555 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D P3962_12675 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein D P3962_13055 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein D P3962_13510 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D P3962_14350 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein D P3962_12670 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D P3962_13060 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D P3962_13235 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D P3962_13505 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D P3962_14345 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D P3962_09990 sufC; Fe-S cluster assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein D P3962_08685 cation:proton antiporter K23994 SLC9B1_2; solute carrier family 9B (sodium/hydrogen exchanger), member 1/2 D P3962_06735 MATE family efflux transporter K26939 norM; MATE family, multidrug efflux pump D P3962_05120 MATE family efflux transporter K26939 norM; MATE family, multidrug efflux pump D P3962_12865 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump D P3962_01020 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump D P3962_10235 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump D P3962_01440 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump D P3962_00145 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump D P3962_00450 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump D P3962_00315 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump D P3962_11880 MFS transporter K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein D P3962_11825 ptsP; phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D P3962_00950 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr D P3962_01420 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr D P3962_13825 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr D P3962_01405 PTS sugar transporter subunit IIA K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197] D P3962_01395 PTS mannitol transporter subunit IICBA K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] D P3962_05015 PTS transporter subunit IIC K02775 gatC; galactitol PTS system EIIC component D P3962_13840 PTS sugar transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D P3962_13830 PTS sugar transporter subunit IIC K02795 manY; mannose PTS system EIIC component D P3962_13835 PTS system mannose/fructose/sorbose family transporter subunit IID K02796 manZ; mannose PTS system EIID component D P3962_01325 PTS sugar transporter subunit IIA K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-] D P3962_01310 agaB; PTS galactosamine transporter subunit IIB K10984 agaB; galactosamine PTS system EIIB component [EC:2.7.1.-] D P3962_01315 agaC; PTS galactosamine transporter subunit IIC K10985 agaC; galactosamine PTS system EIIC component D P3962_01320 agaD; PTS galactosamine transporter subunit IID K10986 agaD; galactosamine PTS system EIID component D P3962_11690 aquaporin family protein K02440 glpF; glycerol uptake facilitator D P3962_08925 mscL; large conductance mechanosensitive channel protein MscL K03282 mscL; large conductance mechanosensitive channel D P3962_11455 mechanosensitive ion channel family protein K22044 ybiO; moderate conductance mechanosensitive channel D P3962_12375 mgtE; magnesium transporter K06213 mgtE; magnesium transporter D P3962_09110 MotA/TolQ/ExbB proton channel family protein K02556 motA; chemotaxis protein MotA D P3962_09105 flagellar motor protein MotB K02557 motB; chemotaxis protein MotB D P3962_10120 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D P3962_12405 endospore germination permease K06289 gerAB; spore germination protein AB D P3962_13010 endospore germination permease K06296 gerKB; spore germination protein KB D P3962_00135 zupT; zinc transporter ZupT K07238 TC.ZIP; zinc transporter, ZIP family D P3962_01970 ZIP family metal transporter K07238 TC.ZIP; zinc transporter, ZIP family D P3962_06915 ZIP family metal transporter K07238 TC.ZIP; zinc transporter, ZIP family D P3962_12205 zupT; zinc transporter ZupT K07238 TC.ZIP; zinc transporter, ZIP family D P3962_13280 ZIP family metal transporter K07238 TC.ZIP; zinc transporter, ZIP family D P3962_00530 Na+/H+ antiporter family protein K07084 yuiF; putative amino acid transporter D P3962_00795 GntP family permease K03299 TC.GNTP; gluconate:H+ symporter, GntP family D P3962_12605 SLC13 family permease K03299 TC.GNTP; gluconate:H+ symporter, GntP family D P3962_00520 BCCT family transporter K05020 opuD; glycine betaine transporter D P3962_11420 BCCT family transporter K05020 opuD; glycine betaine transporter D P3962_00110 putP; sodium/proline symporter PutP K11928 putP; sodium/proline symporter D P3962_14870 sodium/proline symporter K11928 putP; sodium/proline symporter D P3962_11800 gltS; sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family D P3962_11805 gltS; sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family D P3962_14420 gltS; sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family D P3962_05250 nhaC; Na+/H+ antiporter NhaC K03315 nhaC; Na+:H+ antiporter, NhaC family D P3962_01390 potassium/proton antiporter K11105 cvrA; potassium/hydrogen antiporter D P3962_04840 TrkH family potassium uptake protein K03498 trkH; trk/ktr system potassium uptake protein D P3962_10735 TrkH family potassium uptake protein K03498 trkH; trk/ktr system potassium uptake protein D P3962_04835 TrkA family potassium uptake protein K03499 trkA; trk/ktr system potassium uptake protein D P3962_10740 trkA; Trk system potassium transporter TrkA K03499 trkA; trk/ktr system potassium uptake protein D P3962_06005 solute carrier family 23 protein K02824 uraA; uracil permease D P3962_08100 uracil-xanthine permease family protein K02824 uraA; uracil permease D P3962_06790 NCS2 family permease K06901 pbuG; adenine/guanine/hypoxanthine permease D P3962_08825 NCS2 family permease K06901 pbuG; adenine/guanine/hypoxanthine permease D P3962_08625 chromate transporter K07240 chrA; chromate transporter D P3962_08630 chromate transporter K07240 chrA; chromate transporter D P3962_09720 chromate transporter K07240 chrA; chromate transporter D P3962_09725 chromate transporter K07240 chrA; chromate transporter D P3962_13265 chromate transporter K07240 chrA; chromate transporter D P3962_13270 chromate transporter K07240 chrA; chromate transporter D P3962_12725 dctP; TRAP transporter substrate-binding protein DctP K11688 dctP; C4-dicarboxylate-binding protein DctP D P3962_13135 TRAP transporter small permease K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D P3962_05455 TRAP transporter large permease K11690 dctM; C4-dicarboxylate transporter, DctM subunit D P3962_12745 TRAP transporter large permease K11690 dctM; C4-dicarboxylate transporter, DctM subunit D P3962_13140 TRAP transporter large permease K11690 dctM; C4-dicarboxylate transporter, DctM subunit D P3962_05750 Na+/H+ antiporter NhaC family protein K21393 yiaN; TRAP-type transport system large permease protein D P3962_05895 TRAP transporter large permease subunit K21393 yiaN; TRAP-type transport system large permease protein D P3962_05445 DctP family TRAP transporter solute-binding subunit K21395 yiaO; TRAP-type transport system periplasmic protein D P3962_06615 Na/Pi cotransporter family protein K03324 yjbB; phosphate:Na+ symporter D P3962_10085 arsA; arsenical pump-driving ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D P3962_11625 arsA; arsenical pump-driving ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D P3962_11630 arsB; ACR3 family arsenite efflux transporter K03325 ACR3; arsenite transporter D P3962_12170 DUF4040 domain-containing protein K05566 mnhB; multicomponent Na+:H+ antiporter subunit B D P3962_12175 MnhB domain-containing protein K05566 mnhB; multicomponent Na+:H+ antiporter subunit B D P3962_12180 cation:proton antiporter subunit C K05567 mnhC; multicomponent Na+:H+ antiporter subunit C D P3962_12185 proton-conducting transporter membrane subunit K05568 mnhD; multicomponent Na+:H+ antiporter subunit D D P3962_12190 proton-conducting transporter membrane subunit K05568 mnhD; multicomponent Na+:H+ antiporter subunit D D P3962_12195 proton-conducting transporter membrane subunit K05568 mnhD; multicomponent Na+:H+ antiporter subunit D D P3962_12155 Na+/H+ antiporter subunit E K05569 mnhE; multicomponent Na+:H+ antiporter subunit E D P3962_12160 monovalent cation/H+ antiporter complex subunit F K05570 mnhF; multicomponent Na+:H+ antiporter subunit F D P3962_12165 monovalent cation/H(+) antiporter subunit G K05571 mnhG; multicomponent Na+:H+ antiporter subunit G D P3962_08325 polysaccharide biosynthesis protein K06409 spoVB; stage V sporulation protein B D P3962_12980 murJ; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase D P3962_00850 AEC family transporter K24180 mleP; malate permease and related proteins D P3962_00860 AEC family transporter K24180 mleP; malate permease and related proteins D P3962_12065 AzlC family ABC transporter permease K26605 azlC; branched chain amino acid efflux pump D P3962_12070 AzlD domain-containing protein K26606 azlD; branched chain amino acid efflux pump D P3962_10045 tripartite tricarboxylate transporter permease K07793 tctA; putative tricarboxylic transport membrane protein D P3962_12515 tripartite tricarboxylate transporter TctB family protein K07794 tctB; putative tricarboxylic transport membrane protein D P3962_09030 tripartite tricarboxylate transporter substrate binding protein K07795 tctC; putative tricarboxylic transport membrane protein D P3962_13440 ECF transporter S component K23675 fmnP; riboflavin transporter D P3962_04385 thiT; energy-coupled thiamine transporter ThiT K16789 thiT; thiamine transporter D P3962_13450 ECF transporter S component K16788 niaX; niacin transporter D P3962_03490 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW D P3962_06520 sodium-translocating pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1] D P3962_09560 sodium ion-translocating decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D P3962_10370 sodium ion-translocating decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D P3962_09985 oxaloacetate decarboxylase subunit alpha K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D P3962_10360 oxaloacetate decarboxylase subunit alpha K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D P3962_08245 carboxyl transferase domain-containing protein K01604 mmdA; methylmalonyl-CoA decarboxylase subunit alpha [EC:7.2.4.3] D P3962_08235 DUF2118 domain-containing protein K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma D P3962_10375 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma D P3962_11020 cytochrome c biogenesis protein CcdA K06196 ccdA; cytochrome c-type biogenesis protein D P3962_01685 FeoA family protein K04758 feoA; ferrous iron transport protein A D P3962_01690 FeoA family protein K04758 feoA; ferrous iron transport protein A D P3962_11785 FeoA domain-containing protein K04758 feoA; ferrous iron transport protein A D P3962_01695 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B D P3962_11780 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B D P3962_06730 MgtC/SapB family protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein C 02044 Secretion system [BR:tis02044] D P3962_03720 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D P3962_03700 ATPase, T2SS/T4P/T4SS family K02652 pilB; type IV pilus assembly protein PilB D P3962_03710 type II secretion system F family protein K02653 pilC; type IV pilus assembly protein PilC D P3962_03725 pilM; pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM D P3962_03730 PilN domain-containing protein K02663 pilN; type IV pilus assembly protein PilN D P3962_03705 type IV pilus twitching motility protein PilT K02669 pilT; twitching motility protein PilT D P3962_04500 YggT family protein K02221 yggT; YggT family protein D P3962_02865 helix-hairpin-helix domain-containing protein K02237 comEA; competence protein ComEA D P3962_08930 cytidine/deoxycytidylate deaminase family protein K01493 comEB; dCMP deaminase [EC:3.5.4.12] D P3962_02955 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC D P3962_14230 MBL fold metallo-hydrolase K02238 comEC; competence protein ComEC D P3962_09955 late competence development ComFB family protein K02241 comFB; competence protein ComFB D P3962_09070 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D P3962_09075 flhB; flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D P3962_09160 fliF; flagellar basal-body MS-ring/collar protein FliF K02409 fliF; flagellar M-ring protein FliF D P3962_09145 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D P3962_09305 fliY; flagellar motor switch phosphatase FliY K02417 fliN; flagellar motor switch protein FliN D P3962_09090 fliP; flagellar type III secretion system pore protein FliP K02419 fliP; flagellar biosynthesis protein FliP D P3962_09085 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D P3962_09080 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D P3962_13415 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D P3962_07900 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D P3962_06525 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D P3962_07730 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D P3962_04275 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D P3962_04285 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D P3962_04610 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D P3962_11310 YidC/Oxa1 family membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase D P3962_05390 twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D P3962_05410 tatA; twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D P3962_08980 tatA; twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D P3962_08975 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:tis02042] D P3962_10695 TDT family transporter K11041 eta; exfoliative toxin A/B D P3962_10120 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D P3962_06745 hemolysin III family protein K11068 hlyIII; hemolysin III D P3962_01875 zinc dependent phospholipase C family protein K01114 plc; phospholipase C [EC:3.1.4.3] C 02022 Two-component system [BR:tis02022] D P3962_11520 response regulator transcription factor K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D P3962_09695 response regulator transcription factor K07775 resD; two-component system, OmpR family, response regulator ResD D P3962_11220 ATP-binding protein K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3] D P3962_11225 response regulator K07668 vicR; two-component system, OmpR family, response regulator VicR D P3962_01760 sensor histidine kinase K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3] D P3962_01755 response regulator transcription factor K19082 braR; two-component system, OmpR family, response regulator protein BraR/BceR D P3962_14325 vanR; VanR-ABDEGLN family response regulator transcription factor K18349 vanRC; two-component system, OmpR family, response regulator VanR D P3962_10565 ATP-binding protein K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3] D P3962_10570 response regulator transcription factor K18941 arlR; two-component system, OmpR family, response regulator ArlR D P3962_11100 response regulator transcription factor K07694 vraR; two-component system, NarL family, vancomycin resistance associated response regulator VraR D P3962_03860 spo0A; sporulation transcription factor Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A D P3962_14135 sigma-54 dependent transcriptional regulator K02481 flgR; two-component system, NtrC family, response regulator D P3962_09330 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D P3962_09320 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D P3962_09395 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D P3962_09340 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D P3962_10190 response regulator K07720 yesN; two-component system, response regulator YesN C 02035 Bacterial motility proteins [BR:tis02035] D P3962_09330 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D P3962_01070 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D P3962_09315 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D P3962_09350 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D P3962_09325 chemotaxis protein CheC K03410 cheC; chemotaxis protein CheC D P3962_09345 chemotaxis protein CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D P3962_09335 protein-glutamate O-methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D P3962_09340 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D P3962_09320 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D P3962_09395 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D P3962_01065 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_09355 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_09365 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_09370 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_09375 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_09380 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_09385 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_10800 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_11135 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_12325 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_12920 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_13575 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_13770 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D P3962_09145 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D P3962_09140 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D P3962_09090 fliP; flagellar type III secretion system pore protein FliP K02419 fliP; flagellar biosynthesis protein FliP D P3962_09085 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D P3962_09080 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D P3962_09070 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D P3962_09075 flhB; flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D P3962_09155 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D P3962_09310 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D P3962_09305 fliY; flagellar motor switch phosphatase FliY K02417 fliN; flagellar motor switch protein FliN D P3962_09160 fliF; flagellar basal-body MS-ring/collar protein FliF K02409 fliF; flagellar M-ring protein FliF D P3962_09165 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D P3962_09175 flgB; flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D P3962_09170 flgC; flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D P3962_09130 flagellar hook capping FlgD N-terminal domain-containing protein K02389 flgD; flagellar basal-body rod modification protein FlgD D P3962_09040 flagellar hook-basal body protein K02391 flgF; flagellar basal-body rod protein FlgF D P3962_09035 flagellar hook-basal body protein K02392 flgG; flagellar basal-body rod protein FlgG D P3962_09120 flagellar hook-basal body complex protein K02390 flgE; flagellar hook protein FlgE D P3962_09290 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D P3962_09285 flgL; flagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL D P3962_09200 flagellin K02406 fliC; flagellin D P3962_09190 fliD; flagellar filament capping protein FliD K02407 fliD; flagellar hook-associated protein 2 D P3962_09185 fliS; flagellar export chaperone FliS K02422 fliS; flagellar secretion chaperone FliS D P3962_09050 FliA/WhiG family RNA polymerase sigma factor K02405 fliA; RNA polymerase sigma factor FliA D P3962_09110 MotA/TolQ/ExbB proton channel family protein K02556 motA; chemotaxis protein MotA D P3962_09105 flagellar motor protein MotB K02557 motB; chemotaxis protein MotB D P3962_14115 transporter substrate-binding domain-containing protein K02424 tcyA; L-cystine transport system substrate-binding protein D P3962_09280 fliW; flagellar assembly protein FliW K13626 fliW; flagellar assembly factor FliW D P3962_09300 flgM; flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D P3962_09195 flagellar protein FlaG K06603 flaG; flagellar protein FlaG D P3962_09115 flagellar FlbD family protein K02385 flbD; flagellar protein FlbD D P3962_09065 hypothetical protein K02404 flhF; flagellar biosynthesis protein FlhF D P3962_09060 P-loop NTPase K04562 flhG; flagellar biosynthesis protein FlhG D P3962_03705 type IV pilus twitching motility protein PilT K02669 pilT; twitching motility protein PilT D P3962_03700 ATPase, T2SS/T4P/T4SS family K02652 pilB; type IV pilus assembly protein PilB D P3962_03710 type II secretion system F family protein K02653 pilC; type IV pilus assembly protein PilC D P3962_03720 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D P3962_03730 PilN domain-containing protein K02663 pilN; type IV pilus assembly protein PilN D P3962_03725 pilM; pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM C 03037 Cilium and associated proteins [BR:tis03037] D P3962_08685 cation:proton antiporter K23994 SLC9B1_2; solute carrier family 9B (sodium/hydrogen exchanger), member 1/2 C 04812 Cytoskeleton proteins [BR:tis04812] D P3962_02750 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D P3962_13340 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D P3962_03525 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D P3962_02770 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D P3962_02775 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D P3962_02780 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D P3962_11280 AAA family ATPase K03496 parA; chromosome partitioning protein D P3962_11275 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D P3962_11285 noc; nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:tis04147] D P3962_11465 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG D P3962_06530 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D P3962_06110 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D P3962_06545 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D P3962_00975 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D P3962_05735 dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D P3962_12085 dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D P3962_13580 SPFH domain-containing protein K07192 FLOT; flotillin D P3962_13555 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D P3962_03010 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D P3962_08385 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D P3962_13610 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D P3962_07840 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D P3962_07910 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D P3962_03035 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D P3962_05620 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D P3962_07725 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D P3962_09405 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D P3962_12295 glgB; 1,4-alpha-glucan branching protein GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D P3962_08905 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30] D P3962_11695 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30] D P3962_14085 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D P3962_11530 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D P3962_10060 hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D P3962_12490 hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D P3962_13965 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D P3962_07585 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D P3962_11125 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D P3962_06540 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 02048 Prokaryotic defense system [BR:tis02048] D P3962_05940 cas1b; type I-B CRISPR-associated endonuclease Cas1b K15342 cas1; CRISP-associated protein Cas1 D P3962_05935 cas2; CRISPR-associated endonuclease Cas2 K09951 cas2; CRISPR-associated protein Cas2 D P3962_05950 cas3; CRISPR-associated helicase Cas3' K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D P3962_05960 cas7i; type I-B CRISPR-associated protein Cas7/Cst2/DevR K19075 cst2; CRISPR-associated protein Cst2 D P3962_05945 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D P3962_05955 cas5b; type I-B CRISPR-associated protein Cas5b K19090 cas5t; CRISPR-associated protein Cas5t D P3962_05970 cas6; CRISPR-associated endoribonuclease Cas6 K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-] D P3962_05810 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D P3962_02895 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D P3962_02095 site-specific DNA-methyltransferase K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D P3962_00720 type II toxin-antitoxin system PemK/MazF family toxin K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D P3962_08890 type II toxin-antitoxin system PemK/MazF family toxin K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D P3962_10830 type II toxin-antitoxin system PemK/MazF family toxin K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D P3962_10825 AbrB/MazE/SpoVT family DNA-binding domain-containing protein K07172 mazE; antitoxin MazE D P3962_09910 type II toxin-antitoxin system RelE/ParE family toxin K19092 parE1_3_4; toxin ParE1/3/4 D P3962_03525 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D P3962_02750 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D P3962_13340 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D P3962_02545 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D P3962_03615 nifS; cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes [BR:tis01504] D P3962_00325 abc-f; ABC-F type ribosomal protection protein K18231 msr; macrolide transport system ATP-binding/permease protein D P3962_13775 abc-f; ABC-F type ribosomal protection protein K18231 msr; macrolide transport system ATP-binding/permease protein D P3962_11880 MFS transporter K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein D P3962_01385 Vat family streptogramin A O-acetyltransferase K18234 vat; virginiamycin A acetyltransferase [EC:2.3.1.-] D P3962_05745 class A beta-lactamase-related serine hydrolase K17836 penP; beta-lactamase class A [EC:3.5.2.6] D P3962_14325 vanR; VanR-ABDEGLN family response regulator transcription factor K18349 vanRC; two-component system, OmpR family, response regulator VanR C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:tis00537] D P3962_11530 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D P3962_05735 dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D P3962_12085 dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:tis03100] D P3962_08190 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D P3962_06395 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D P3962_08120 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D P3962_02400 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D P3962_12500 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase PdxA K22024 pdxA2; 4-phospho-D-threonate 3-dehydrogenase / 4-phospho-D-erythronate 3-dehydrogenase [EC:1.1.1.408 1.1.1.409] D P3962_11480 iron-containing alcohol dehydrogenase K19955 adh2; alcohol dehydrogenase [EC:1.1.1.-] D P3962_08815 (2Fe-2S)-binding protein K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3] D P3962_05995 FAD binding domain-containing protein K03519 coxM; aerobic carbon-monoxide dehydrogenase medium subunit [EC:1.2.5.3] D P3962_12720 NAD/NADP octopine/nopaline dehydrogenase family protein K04940 odh; opine dehydrogenase [EC:1.5.1.28] D P3962_11580 FprA family A-type flavoprotein K22405 fprA1_2; NADH oxidase (H2O-forming) [EC:1.6.3.4] D P3962_10225 namA; NADPH dehydrogenase NamA K00354 E1.6.99.1; NADPH2 dehydrogenase [EC:1.6.99.1] D P3962_14445 NAD(P)H-dependent oxidoreductase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D P3962_00340 FAD-dependent oxidoreductase K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-] D P3962_02065 msrA; peptide-methionine (S)-S-oxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D P3962_10585 msrB; peptide-methionine (R)-S-oxide reductase MsrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D P3962_11185 tpx; thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D P3962_01025 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D P3962_08405 class II SORL domain-containing protein K05919 dfx; superoxide reductase [EC:1.15.1.2] D P3962_05790 multicopper oxidase K06324 cotA; spore coat protein A, manganese oxidase [EC:1.16.3.3] D P3962_10675 2Fe-2S iron-sulfur cluster-binding protein K22338 hylA; formate dehydrogenase (NAD+, ferredoxin) subunit A [EC:1.17.1.11] D P3962_10680 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region domain-containing protein K22339 hylB; formate dehydrogenase (NAD+, ferredoxin) subunit B [EC:1.17.1.11] D P3962_10310 nuoE; NADH-quinone oxidoreductase subunit NuoE K22340 hylC; formate dehydrogenase (NAD+, ferredoxin) subunit C [EC:1.17.1.11] D P3962_10685 nuoE; NADH-quinone oxidoreductase subunit NuoE K22340 hylC; formate dehydrogenase (NAD+, ferredoxin) subunit C [EC:1.17.1.11] D P3962_10670 fdhF; formate dehydrogenase subunit alpha K22341 fdhF2; formate dehydrogenase (NAD+, ferredoxin) subunit [EC:1.17.1.11] D P3962_10080 arsenate reductase ArsC K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D P3962_11635 arsenate reductase ArsC K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D P3962_06600 grdA; glycine/sarcosine/betaine reductase complex selenoprotein A K10670 grdA; glycine/sarcosine/betaine reductase complex component A [EC:1.21.4.2 1.21.4.3 1.21.4.4] D P3962_06605 glycine/sarcosine/betaine reductase component B subunit K10671 grdE; glycine reductase complex component B subunit alpha and beta [EC:1.21.4.2] D P3962_11410 glycine/sarcosine/betaine reductase component B subunit K10671 grdE; glycine reductase complex component B subunit alpha and beta [EC:1.21.4.2] D P3962_06595 grdB; glycine reductase complex selenoprotein B K10672 grdB; glycine reductase complex component B subunit gamma [EC:1.21.4.2] D P3962_06585 grdD; glycine/sarcosine/betaine reductase complex component C subunit alpha K21576 grdD; glycine/sarcosine/betaine reductase complex component C subunit alpha [EC:1.21.4.2 1.21.4.3 1.21.4.4] D P3962_02080 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4] D P3962_09510 pflA; pyruvate formate-lyase-activating protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D P3962_08400 class I SAM-dependent RNA methyltransferase K07444 ypsC; putative N6-adenine-specific DNA methylase [EC:2.1.1.-] D P3962_08785 N-acetyltransferase K03826 yiaC; putative acetyltransferase [EC:2.3.1.-] D P3962_03450 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D P3962_09005 FAD:protein FMN transferase K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D P3962_12495 four-carbon acid sugar kinase family protein K22129 dtnK; D-threonate/D-erythronate kinase [EC:2.7.1.219 2.7.1.220] D P3962_04360 DAK2 domain-containing protein K07030 fakA; fatty acid kinase [EC:2.7.2.18] D P3962_01915 kinase/pyrophosphorylase K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D P3962_03125 kinase/pyrophosphorylase K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D P3962_07105 cdaA; diadenylate cyclase CdaA K18672 dacA; diadenylate cyclase [EC:2.7.7.85] D P3962_06415 YdiU family protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108] D P3962_03325 spoIIAB; anti-sigma F factor K06379 spoIIAB; stage II sporulation protein AB (anti-sigma F factor) [EC:2.7.11.1] D P3962_00905 hprK; HPr(Ser) kinase/phosphatase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] D P3962_07995 protein arginine kinase K19405 mcsB; protein arginine kinase [EC:2.7.14.1] D P3962_04670 macro domain-containing protein K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106] D P3962_08285 spoIIE; stage II sporulation protein E K06382 spoIIE; stage II sporulation protein E [EC:3.1.3.16] D P3962_08460 histidine phosphatase family protein K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-] D P3962_11565 DHH family phosphoesterase K22927 gdpP; cyclic-di-AMP phosphodiesterase [EC:3.1.4.59] D P3962_12335 TatD family hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D P3962_12340 rnmV; ribonuclease M5 K05985 rnmV; ribonuclease M5 [EC:3.1.26.8] D P3962_05755 D-aminoacylase K06015 E3.5.1.81; N-acyl-D-amino-acid deacylase [EC:3.5.1.81] D P3962_08485 D-aminoacylase K06015 E3.5.1.81; N-acyl-D-amino-acid deacylase [EC:3.5.1.81] D P3962_04430 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D P3962_11970 polysaccharide deacetylase family protein K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D P3962_02855 RidA family protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D P3962_08480 RidA family protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D P3962_13290 low molecular weight protein arginine phosphatase K20201 ywlE; protein arginine phosphatase [EC:3.9.1.2] D P3962_09675 splB; spore photoproduct lyase K03716 splB; spore photoproduct lyase [EC:4.1.99.14] D P3962_08500 dpaL; diaminopropionate ammonia-lyase K01751 E4.3.1.15; diaminopropionate ammonia-lyase [EC:4.3.1.15] D P3962_08660 dpaL; diaminopropionate ammonia-lyase K01751 E4.3.1.15; diaminopropionate ammonia-lyase [EC:4.3.1.15] D P3962_04680 cphA; cyanophycin synthetase K03802 cphA; cyanophycin synthetase [EC:6.3.2.29 6.3.2.30] D P3962_02705 RnfABCDGE type electron transport complex subunit D K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2] D P3962_02700 rsxC; electron transport complex subunit RsxC K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2] D P3962_12755 rsxC; electron transport complex subunit RsxC K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2] D P3962_02725 RnfABCDGE type electron transport complex subunit B K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2] D P3962_02030 RnfABCDGE type electron transport complex subunit D K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1] D P3962_02035 FMN-binding protein K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1] D P3962_02040 NADH:ubiquinone reductase (Na(+)-transporting) subunit D K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1] D P3962_02045 Rnf-Nqr domain containing protein K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1] D P3962_02050 2Fe-2S iron-sulfur cluster binding domain-containing protein K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1] D P3962_03395 calcium-translocating P-type ATPase, SERCA-type K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D P3962_11230 cation-translocating P-type ATPase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D P3962_08610 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] D P3962_13980 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] C 99981 Carbohydrate metabolism D P3962_08065 sfsA; DNA/RNA nuclease SfsA K06206 sfsA; sugar fermentation stimulation protein A C 99982 Energy metabolism D P3962_10655 fdhD; formate dehydrogenase accessory sulfurtransferase FdhD K02379 fdhD; FdhD protein D P3962_02710 RnfABCDGE type electron transport complex subunit G K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G D P3962_02715 electron transport complex subunit E K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E D P3962_02720 RnfABCDGE type electron transport complex subunit A K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A D P3962_03620 nifU; Fe-S cluster assembly scaffold protein NifU K04488 iscU; nitrogen fixation protein NifU and related proteins D P3962_10010 SUF system NifU family Fe-S cluster assembly protein K04488 iscU; nitrogen fixation protein NifU and related proteins D P3962_02180 dodecin family protein K09165 K09165; dodecin C 99983 Lipid metabolism D P3962_03585 DegV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit D P3962_06910 DegV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit D P3962_09600 DegV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D P3962_00885 eutH; ethanolamine utilization protein EutH K04023 eutH; ethanolamine transporter D P3962_04510 YggS family pyridoxal phosphate-dependent enzyme K06997 yggS; PLP dependent protein C 99986 Glycan metabolism C 99987 Cofactor metabolism D P3962_01795 AbgT family transporter K12942 abgT; aminobenzoyl-glutamate transport protein C 99988 Secondary metabolism C 99999 Others B B 09192 Unclassified: genetic information processing C 99973 Transcription D P3962_02020 cold-shock protein K03704 cspA; cold shock protein D P3962_04910 cold-shock protein K03704 cspA; cold shock protein D P3962_05525 cold-shock protein K03704 cspA; cold shock protein D P3962_06060 cold shock domain-containing protein K03704 cspA; cold shock protein D P3962_13425 Tex family protein K06959 tex; protein Tex D P3962_04455 DUF370 domain-containing protein K09777 remA; extracellular matrix regulatory protein A D P3962_11350 hypothetical protein K24648 remB; extracellular matrix regulatory protein B C 99974 Translation D P3962_08290 S1 RNA-binding domain-containing protein K07571 K07571; S1 RNA binding domain protein D P3962_02585 MBL fold metallo-hydrolase K07576 K07576; metallo-beta-lactamase family protein C 99975 Protein processing D P3962_08000 UvrB/UvrC motif-containing protein K19411 mcsA; protein arginine kinase activator D P3962_06985 tig; trigger factor K03545 tig; trigger factor D P3962_06495 smpB; SsrA-binding protein SmpB K03664 smpB; SsrA-binding protein D P3962_04230 YifB family Mg chelatase-like AAA ATPase K07391 comM; magnesium chelatase family protein D P3962_00540 OsmC family protein K07397 yhfA; putative redox protein D P3962_08675 cytochrome c biogenesis protein ResB K07399 resB; cytochrome c biogenesis protein D P3962_11820 Rdx family protein K07401 K07401; selenoprotein W-related protein D P3962_05305 yqeB; selenium-dependent molybdenum cofactor biosynthesis protein YqeB K07402 xdhC; xanthine dehydrogenase accessory factor C 99976 Replication and repair D P3962_08935 ribonuclease H family protein K06993 K06993; ribonuclease H-related protein D P3962_02745 radC; DNA repair protein RadC K03630 radC; DNA repair protein RadC D P3962_02905 JAB domain-containing protein K03630 radC; DNA repair protein RadC D P3962_03190 radC; DNA repair protein RadC K03630 radC; DNA repair protein RadC D P3962_04235 YraN family protein K07460 yraN; putative endonuclease D P3962_02275 GIY-YIG nuclease family protein K07461 K07461; putative endonuclease D P3962_04225 dprA; DNA-processing protein DprA K04096 smf; DNA processing protein D P3962_03570 replication-associated recombination protein A K07478 ycaJ; putative ATPase D P3962_13810 helix-turn-helix domain-containing protein K07483 K07483; transposase D P3962_05925 tnpB; IS66 family insertion sequence element accessory protein TnpB K07484 K07484; transposase D P3962_08950 tnpB; IS66 family insertion sequence element accessory protein TnpB K07484 K07484; transposase D P3962_12450 tnpB; IS66 family insertion sequence element accessory protein TnpB K07484 K07484; transposase D P3962_03915 IS110 family transposase K07486 K07486; transposase D P3962_13805 IS3 family transposase K07497 K07497; putative transposase D P3962_14210 IS3 family transposase K07497 K07497; putative transposase C 99979 Viral proteins C 99998 Others D P3962_11835 YbaB/EbfC family nucleoid-associated protein K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D P3962_14005 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D P3962_12580 efflux RND transporter permease subunit K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family D P3962_01480 citrate:proton symporter K03300 TC.CITMHS; citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family D P3962_10385 citrate:proton symporter K03300 TC.CITMHS; citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family D P3962_10415 citrate:proton symporter K03300 TC.CITMHS; citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family D P3962_08490 sodium:solute symporter family protein K03307 TC.SSS; solute:Na+ symporter, SSS family D P3962_04995 sodium-dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D P3962_06375 sodium-dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D P3962_11735 sodium-dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D P3962_14565 sodium-dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D P3962_00550 sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D P3962_08960 sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D P3962_13570 alanine/glycine:cation symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D P3962_05030 brnQ; branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family C 99978 Cell growth D P3962_08705 ric; iron-sulfur cluster repair di-iron protein K07322 ytfE; regulator of cell morphogenesis and NO signaling D P3962_12210 pro-sigmaK processing inhibitor BofA family protein K06317 bofA; inhibitor of the pro-sigma K processing machinery D P3962_13795 GNAT family N-acetyltransferase K06323 cgeE; spore maturation protein CgeE D P3962_07470 spore coat protein CotJB K06333 cotJB; spore coat protein JB D P3962_07125 manganese catalase family protein K06334 cotJC; spore coat protein JC D P3962_11305 jag; RNA-binding cell elongation regulator Jag/EloR K06346 jag; spoIIIJ-associated protein D P3962_03320 anti-sigma factor antagonist K06378 spoIIAA; stage II sporulation protein AA (anti-sigma F factor antagonist) D P3962_03870 stage II sporulation protein M K06384 spoIIM; stage II sporulation protein M D P3962_12415 spoIIR; stage II sporulation protein R K06387 spoIIR; stage II sporulation protein R D P3962_03780 spoIIIAA; stage III sporulation protein AA K06390 spoIIIAA; stage III sporulation protein AA D P3962_03785 stage III sporulation protein AB K06391 spoIIIAB; stage III sporulation protein AB D P3962_03790 spoIIIAC; stage III sporulation protein AC K06392 spoIIIAC; stage III sporulation protein AC D P3962_03795 spoIIIAD; stage III sporulation protein AD K06393 spoIIIAD; stage III sporulation protein AD D P3962_03800 spoIIIAE; stage III sporulation protein AE K06394 spoIIIAE; stage III sporulation protein AE D P3962_03805 spoIIIAF; stage III sporulation protein AF K06395 spoIIIAF; stage III sporulation protein AF D P3962_03810 sporulation stage III protein AG K06396 spoIIIAG; stage III sporulation protein AG D P3962_03815 SpoIIIAH-like family protein K06397 spoIIIAH; stage III sporulation protein AH D P3962_04525 spoIVA; stage IV sporulation protein A K06398 spoIVA; stage IV sporulation protein A D P3962_03335 stage V sporulation protein AA K06403 spoVAA; stage V sporulation protein AA D P3962_03340 stage V sporulation protein AB K06404 spoVAB; stage V sporulation protein AB D P3962_03345 spoVAC; stage V sporulation protein AC K06405 spoVAC; stage V sporulation protein AC D P3962_03350 spoVAD; stage V sporulation protein AD K06406 spoVAD; stage V sporulation protein AD D P3962_03355 spoVAE; stage V sporulation protein AE K06407 spoVAE; stage V sporulation protein AE D P3962_05550 dpsA; dipicolinate synthase subunit DpsA K06410 spoVFA; dipicolinate synthase subunit A D P3962_06215 dpsA; dipicolinate synthase subunit DpsA K06410 spoVFA; dipicolinate synthase subunit A D P3962_05545 dipicolinate synthase subunit B K06411 spoVFB; dipicolinate synthase subunit B D P3962_08370 spoVG; septation regulator SpoVG K06412 spoVG; stage V sporulation protein G D P3962_04045 stage V sporulation protein S K06416 spoVS; stage V sporulation protein S D P3962_06360 alpha/beta-type small acid-soluble spore protein K06421 sspD; small acid-soluble spore protein D (minor alpha/beta-type SASP) D P3962_11045 tlp; small acid-soluble spore protein Tlp K06434 tlp; small acid-soluble spore protein (thioredoxin-like protein) D P3962_03070 yqfD; sporulation protein YqfD K06438 yqfD; similar to stage IV sporulation protein D P3962_13635 spore coat protein K06439 yraD; similar to spore coat protein D P3962_13615 hypothetical protein K06440 yraG; similar to spore coat protein D P3962_05085 spore germination protein K06295 gerKA; spore germination protein KA D P3962_13020 spore germination protein K06295 gerKA; spore germination protein KA D P3962_05080 Ger(x)C family spore germination protein K06297 gerKC; spore germination protein KC D P3962_13015 Ger(x)C family spore germination protein K06297 gerKC; spore germination protein KC D P3962_14525 GerMN domain-containing protein K06298 gerM; germination protein M D P3962_12400 spore germination protein K06310 yndD; spore germination protein D P3962_12425 ypeB; germination protein YpeB K06313 ypeB; spore germination protein C 99993 Cell motility C 99995 Signaling proteins D P3962_06945 typA; translational GTPase TypA K06207 typA; GTP-binding protein D P3962_03075 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins C 99992 Structural proteins D P3962_08445 glycoside hydrolase family 25 protein K07273 acm; lysozyme D P3962_12680 efflux RND transporter periplasmic adaptor subunit K02005 ABC.CD.TX; HlyD family secretion protein D P3962_13500 efflux RND transporter periplasmic adaptor subunit K02005 ABC.CD.TX; HlyD family secretion protein C 99994 Others D P3962_11515 phoU; phosphate signaling complex protein PhoU K02039 phoU; phosphate transport system protein D P3962_12880 bacteriohemerythrin K07216 hr; hemerythrin D P3962_10630 molybdopterin biosynthesis protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] B B 09194 Poorly characterized C 99996 General function prediction only D P3962_00920 PHP domain-containing protein K04477 ycdX; putative hydrolase D P3962_11845 phosphatase K04477 ycdX; putative hydrolase D P3962_08920 patatin-like phospholipase family protein K07001 K07001; NTE family protein D P3962_09995 sufB; Fe-S cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB D P3962_10000 sufD; Fe-S cluster assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD D P3962_05980 metal-dependent hydrolase K07038 K07038; inner membrane protein D P3962_13390 YihY/virulence factor BrkB family protein K07058 K07058; membrane protein D P3962_01900 VOC family protein K04750 phnB; PhnB protein D P3962_14030 LemA family protein K03744 lemA; LemA protein D P3962_12875 DUF368 domain-containing protein K08974 K08974; putative membrane protein D P3962_00635 zinc ribbon domain-containing protein YjdM K06193 phnA; protein PhnA C 99997 Function unknown D P3962_04595 scfB; thioether cross-link-forming SCIFF peptide maturase K06871 K06871; uncharacterized protein D P3962_09550 TPM domain-containing protein K06872 K06872; uncharacterized protein D P3962_05000 thioredoxin domain-containing protein K06888 K06888; uncharacterized protein D P3962_06335 alpha/beta hydrolase K06889 K06889; uncharacterized protein D P3962_10720 prolyl oligopeptidase family serine peptidase K06889 K06889; uncharacterized protein D P3962_03375 CoA-binding protein K06929 K06929; uncharacterized protein D P3962_10130 DNA-binding protein K06934 K06934; uncharacterized protein D P3962_08720 cation:dicarboxylase symporter family transporter K06956 K06956; uncharacterized protein D P3962_04265 KH domain-containing protein K06960 K06960; uncharacterized protein D P3962_07925 NYN domain-containing protein K06962 K06962; uncharacterized protein D P3962_04420 zinc metallopeptidase K06973 K06973; uncharacterized protein D P3962_05855 GNAT family N-acetyltransferase K06975 K06975; uncharacterized protein D P3962_10730 GNAT family N-acetyltransferase K06976 K06976; uncharacterized protein D P3962_01645 succinylglutamate desuccinylase/aspartoacylase family protein K06987 K06987; uncharacterized protein D P3962_00215 pyridoxamine 5'-phosphate oxidase family protein K07005 K07005; uncharacterized protein D P3962_11610 PTS sugar transporter subunit IIC K07035 K07035; uncharacterized protein D P3962_07610 aldo/keto reductase K07079 K07079; uncharacterized protein D P3962_13025 aldo/keto reductase K07079 K07079; uncharacterized protein D P3962_05905 TAXI family TRAP transporter solute-binding subunit K07080 K07080; uncharacterized protein D P3962_11710 TAXI family TRAP transporter solute-binding subunit K07080 K07080; uncharacterized protein D P3962_11660 permease K07089 K07089; uncharacterized protein D P3962_03380 TSUP family transporter K07090 K07090; uncharacterized protein D P3962_03385 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D P3962_09435 TSUP family transporter K07090 K07090; uncharacterized protein D P3962_00125 yfcE; phosphodiesterase K07095 K07095; uncharacterized protein D P3962_06455 metallophosphoesterase family protein K07095 K07095; uncharacterized protein D P3962_14620 metallophosphoesterase K07098 K07098; uncharacterized protein D P3962_05210 metallophosphoesterase K07099 K07099; uncharacterized protein D P3962_11605 transcription repressor NadR K07105 K07105; uncharacterized protein D P3962_07500 yedE; YedE family putative selenium transporter K07112 K07112; uncharacterized protein D P3962_07515 FAD-dependent oxidoreductase K07137 K07137; uncharacterized protein D P3962_10755 NAD(P)/FAD-dependent oxidoreductase K07137 K07137; uncharacterized protein D P3962_01535 DUF362 domain-containing protein K07138 K07138; uncharacterized protein D P3962_02115 TIGR01212 family radical SAM protein K07139 K07139; uncharacterized protein D P3962_10335 TIGR01212 family radical SAM protein K07139 K07139; uncharacterized protein D P3962_13545 DUF554 domain-containing protein K07150 K07150; uncharacterized protein D P3962_03155 C4-type zinc ribbon domain-containing protein K07164 K07164; uncharacterized protein D P3962_11315 yidD; membrane protein insertion efficiency factor YidD K08998 K08998; uncharacterized protein D P3962_03045 GatB/YqeY domain-containing protein K09117 K09117; uncharacterized protein D P3962_13100 DUF401 family protein K09133 K09133; uncharacterized protein D P3962_10295 DUF438 domain-containing protein K09155 K09155; uncharacterized protein D P3962_11425 PAS domain-containing protein K09155 K09155; uncharacterized protein D P3962_11055 ferritin-like domain-containing protein K09700 K09700; uncharacterized protein D P3962_11890 FapA family protein K09749 K09749; uncharacterized protein D P3962_06650 DUF503 domain-containing protein K09764 K09764; uncharacterized protein D P3962_11885 DUF188 domain-containing protein K09768 K09768; uncharacterized protein D P3962_05180 DUF378 domain-containing protein K09779 K09779; uncharacterized protein D P3962_04280 sigma factor-like helix-turn-helix DNA-binding protein K09787 K09787; uncharacterized protein D P3962_10980 YbaN family protein K09790 K09790; uncharacterized protein D P3962_00995 S1-like domain-containing RNA-binding protein K00243 K00243; uncharacterized protein D P3962_11155 yaaA; peroxide stress protein YaaA K09861 K09861; uncharacterized protein D P3962_08170 hypothetical protein K05967 K05967; uncharacterized protein D P3962_04160 YlxR family protein K07742 ylxR; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: September 23, 2024