+D GENES KO
#
KEGG Orthology (KO) - Thioflavicoccus mobilis
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:tmb00010]
D Thimo_0415 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D Thimo_3517 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Thimo_1198 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Thimo_2630 fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D Thimo_3191 DhnA-type fructose-1,6-bisphosphate aldolase-like enzyme K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D Thimo_0389 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Thimo_2172 fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Thimo_0582 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Thimo_2175 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Thimo_2174 3-phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Thimo_1389 phosphoglycerate mutase, BPG-dependent, family 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Thimo_3160 fructose-2,6-bisphosphatase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Thimo_3374 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D Thimo_1323 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Thimo_2891 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Thimo_2173 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Thimo_3326 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D Thimo_2112 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Thimo_1087 pyruvate dehydrogenase E1 component, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D Thimo_1086 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Thimo_1085 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Thimo_1404 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D Thimo_0250 2-oxoacid:ferredoxin oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Thimo_0251 2-oxoacid:ferredoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Thimo_1384 Zn-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D Thimo_1052 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Thimo_3043 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Thimo_0741 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D Thimo_2282 ATP-dependent phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
C 00020 Citrate cycle (TCA cycle) [PATH:tmb00020]
D Thimo_0081 citrate synthase I, hexameric type K01647 CS; citrate synthase [EC:2.3.3.1]
D Thimo_0243 aconitase A K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D Thimo_1469 aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D Thimo_0244 isocitrate dehydrogenase, NADP-dependent, monomeric type K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D Thimo_0680 2-oxoglutarate dehydrogenase, E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D Thimo_0681 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D Thimo_1085 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Thimo_0250 2-oxoacid:ferredoxin oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Thimo_0251 2-oxoacid:ferredoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Thimo_0252 2-oxoacid:ferredoxin oxidoreductase, gamma subunit K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D Thimo_0249 NADH:ubiquinone oxidoreductase chain I-like protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D Thimo_0242 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D Thimo_0241 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D Thimo_0466 succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Thimo_0467 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Thimo_0464 succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D Thimo_0465 succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D Thimo_2830 hydro-lyase, Fe-S type, tartrate/fumarate subfamily,hydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D Thimo_1235 fumarase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D Thimo_0239 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Thimo_1967 acetyl/propionyl-CoA carboxylase, alpha subunit K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D Thimo_1968 oxaloacetate decarboxylase alpha subunit K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D Thimo_2282 ATP-dependent phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D Thimo_1087 pyruvate dehydrogenase E1 component, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D Thimo_1086 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Thimo_1404 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:tmb00030]
D Thimo_3517 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Thimo_3516 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D Thimo_3038 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D Thimo_0418 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D Thimo_1975 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D Thimo_3039 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D Thimo_3652 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D Thimo_1547 transaldolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Thimo_2176 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Thimo_0768 transketolase, alpha subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Thimo_0769 transketolase, beta subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Thimo_1628 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D Thimo_1187 ribose 5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D Thimo_1917 phosphoketolase K01621 xfp; xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [EC:4.1.2.9 4.1.2.22]
D Thimo_3043 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Thimo_0741 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D Thimo_3135 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Thimo_3608 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Thimo_2012 putative glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D Thimo_3191 DhnA-type fructose-1,6-bisphosphate aldolase-like enzyme K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D Thimo_0389 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Thimo_2172 fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Thimo_2630 fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D Thimo_1198 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C 00040 Pentose and glucuronate interconversions [PATH:tmb00040]
D Thimo_2879 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Thimo_1713 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Thimo_3652 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D Thimo_3603 pentulose/hexulose kinase K22935 XK1; D-ribulokinase [EC:2.7.1.47]
C 00051 Fructose and mannose metabolism [PATH:tmb00051]
D Thimo_1130 sugar kinase, ribokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D Thimo_0976 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D Thimo_0977 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D Thimo_0741 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D Thimo_1198 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Thimo_2630 fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D Thimo_2207 sugar kinase, ribokinase K00846 KHK; ketohexokinase [EC:2.7.1.3]
D Thimo_3191 DhnA-type fructose-1,6-bisphosphate aldolase-like enzyme K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D Thimo_0389 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Thimo_2172 fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Thimo_0582 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Thimo_2766 phosphotransferase system, mannose/fructose-specific component IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
C 00052 Galactose metabolism [PATH:tmb00052]
D Thimo_3138 UDP-glucose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Thimo_1713 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Thimo_3043 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Thimo_0741 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D Thimo_0415 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D Thimo_1198 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Thimo_1811 family 31 glycosyl hydrolase, alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
C 00053 Ascorbate and aldarate metabolism [PATH:tmb00053]
D Thimo_2879 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Thimo_3601 nucleoside-diphosphate-sugar epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
C 00500 Starch and sucrose metabolism [PATH:tmb00500]
D Thimo_1348 putative sucrose phosphate synthase with sucrose phosphatase and glycosyltransferase domains K00696 E2.4.1.14; sucrose-phosphate synthase [EC:2.4.1.14]
D Thimo_1811 family 31 glycosyl hydrolase, alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D Thimo_2700 glycosidase K05341 E2.4.1.4; amylosucrase [EC:2.4.1.4]
D Thimo_2212 hypothetical protein K00690 E2.4.1.7; sucrose phosphorylase [EC:2.4.1.7]
D Thimo_1713 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Thimo_3373 ADP-glucose pyrophosphorylase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D Thimo_3318 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D Thimo_1833 ADP-glucose pyrophosphorylase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D Thimo_3515 glycogen/starch synthase, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21]
D Thimo_3437 glycogen/starch synthase, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21]
D Thimo_3319 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D Thimo_1916 glycogen/starch/alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D Thimo_0103 glycogen/starch/alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D Thimo_3317 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D Thimo_2912 alpha-amylase/alpha-mannosidase K22451 jgt; 4-alpha-glucanotransferase [EC:2.4.1.25]
D Thimo_3438 glycosidase K16147 glgE; starch synthase (maltosyl-transferring) [EC:2.4.99.16]
D Thimo_0019 glycosyltransferase K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342]
D Thimo_1722 glycogen debranching enzyme GlgX K01214 ISA; isoamylase [EC:3.2.1.68]
D Thimo_0920 glycogen debranching enzyme GlgX K01214 ISA; isoamylase [EC:3.2.1.68]
D Thimo_1103 glycogen debranching enzyme GlgX K01214 ISA; isoamylase [EC:3.2.1.68]
D Thimo_2343 malto-oligosyltrehalose trehalohydrolase K01236 treZ; maltooligosyltrehalose trehalohydrolase [EC:3.2.1.141]
D Thimo_3043 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Thimo_0741 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D Thimo_0415 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D Thimo_3517 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Thimo_1130 sugar kinase, ribokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:tmb00520]
D Thimo_2072 beta-glucosidase-like glycosyl hydrolase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D Thimo_1130 sugar kinase, ribokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D Thimo_1174 glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Thimo_2546 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D Thimo_1173 UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D Thimo_3524 aminoglycoside phosphotransferase K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221]
D Thimo_3699 Nucleoside-diphosphate-sugar pyrophosphorylase family protein K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99]
D Thimo_2750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Thimo_3109 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Thimo_1019 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D Thimo_0036 putative dehydrogenase K13016 wbpB; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335]
D Thimo_1864 putative PLP-dependent enzyme possibly involved in cell wall biogenesis K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D Thimo_0035 hypothetical protein K13018 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase [EC:2.3.1.201]
D Thimo_3602 nucleotide sugar dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D Thimo_0415 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D Thimo_3043 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Thimo_0741 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D Thimo_1713 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Thimo_2879 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Thimo_3138 UDP-glucose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Thimo_3601 nucleoside-diphosphate-sugar epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D Thimo_2766 phosphotransferase system, mannose/fructose-specific component IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D Thimo_3517 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Thimo_0977 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D Thimo_0976 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D Thimo_0028 putative PLP-dependent enzyme possibly involved in cell wall biogenesis K13010 per; perosamine synthetase [EC:2.6.1.102]
D Thimo_2434 2-polyprenylphenol hydroxylase-like oxidoreductase K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D Thimo_3373 ADP-glucose pyrophosphorylase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D Thimo_3318 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D Thimo_1833 ADP-glucose pyrophosphorylase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:tmb00620]
D Thimo_1052 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Thimo_1404 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D Thimo_0250 2-oxoacid:ferredoxin oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Thimo_0251 2-oxoacid:ferredoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Thimo_1087 pyruvate dehydrogenase E1 component, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D Thimo_1086 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Thimo_1085 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Thimo_1384 Zn-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D Thimo_1934 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D Thimo_1933 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Thimo_2891 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Thimo_2173 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Thimo_0934 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D Thimo_0182 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D Thimo_0183 acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D Thimo_2647 acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D Thimo_1637 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D Thimo_0490 lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D Thimo_0160 Rhodanese-related sulfurtransferase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D Thimo_0762 hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D Thimo_1964 Zn-dependent hydrolase, glyoxylase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D Thimo_3259 malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D Thimo_1967 acetyl/propionyl-CoA carboxylase, alpha subunit K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D Thimo_1968 oxaloacetate decarboxylase alpha subunit K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D Thimo_0239 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Thimo_2830 hydro-lyase, Fe-S type, tartrate/fumarate subfamily,hydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D Thimo_1235 fumarase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D Thimo_1264 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D Thimo_2282 ATP-dependent phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D Thimo_3326 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D Thimo_2112 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Thimo_1054 malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9]
D Thimo_1642 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Thimo_3363 2-isopropylmalate synthase, bacterial type K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D Thimo_0710 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D Thimo_3234 homocitrate synthase NifV K02594 nifV; homocitrate synthase NifV [EC:2.3.3.14]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:tmb00630]
D Thimo_1052 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Thimo_1054 malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9]
D Thimo_0239 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Thimo_0081 citrate synthase I, hexameric type K01647 CS; citrate synthase [EC:2.3.3.1]
D Thimo_0243 aconitase A K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D Thimo_1469 aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D Thimo_1642 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Thimo_1646 acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D Thimo_2299 acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D Thimo_1919 FAD/FMN-dependent dehydrogenase K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]
D Thimo_1920 FAD/FMN-dependent dehydrogenase K11472 glcE; glycolate dehydrogenase FAD-binding subunit [EC:1.1.99.14]
D Thimo_1921 Fe-S oxidoreductase K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14]
D Thimo_1182 Fe-S oxidoreductase K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14]
D Thimo_0304 lactate dehydrogenase-like oxidoreductase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D Thimo_0533 haloacid dehalogenase superfamily enzyme, subfamily IA K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D Thimo_0537 putative phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D Thimo_3651 2-phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D Thimo_3339 ribulose 1,5-bisphosphate carboxylase, large subunit K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
D Thimo_0884 ribulose 1,5-bisphosphate carboxylase, large subunit K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
D Thimo_2947 ribulose 1,5-bisphosphate carboxylase, large subunit K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
D Thimo_0765 ribulose 1,5-bisphosphate carboxylase, large subunit K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
D Thimo_2948 ribulose bisphosphate carboxylase small subunit K01602 rbcS; ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39]
D Thimo_0766 ribulose bisphosphate carboxylase small subunit K01602 rbcS; ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39]
D Thimo_2218 serine-pyruvate aminotransferase/archaeal aspartate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D Thimo_0090 glutamate synthase family protein K00284 GLU; glutamate synthase (ferredoxin) [EC:1.4.7.1]
D Thimo_3682 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Thimo_0342 glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Thimo_1679 glycine cleavage system protein P K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D Thimo_1681 glycine cleavage system protein P K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D Thimo_1677 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Thimo_1085 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Thimo_1678 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D Thimo_2012 putative glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
C 00640 Propanoate metabolism [PATH:tmb00640]
D Thimo_1052 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Thimo_2681 acyl-CoA synthetase/AMP-acid ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D Thimo_1934 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D Thimo_1933 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Thimo_1085 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Thimo_2831 putative quinone oxidoreductase, YhdH/YhfP family K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D Thimo_0934 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D Thimo_0182 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D Thimo_0183 acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D Thimo_2647 acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D Thimo_0241 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D Thimo_0242 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D Thimo_2678 2-methylcitrate synthase/citrate synthase II K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D Thimo_2677 2-methylcitrate dehydratase K01720 prpD; 2-methylcitrate dehydratase [EC:4.2.1.79]
D Thimo_2679 methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30]
C 00650 Butanoate metabolism [PATH:tmb00650]
D Thimo_1642 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Thimo_1640 poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304]
D Thimo_1641 poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit K22881 phaE; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaE
D Thimo_1646 acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D Thimo_2299 acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D Thimo_0466 succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Thimo_0467 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Thimo_0464 succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D Thimo_0465 succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D Thimo_1405 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D Thimo_1234 NAD-dependent aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D Thimo_1404 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D Thimo_0250 2-oxoacid:ferredoxin oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Thimo_0251 2-oxoacid:ferredoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Thimo_0382 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Thimo_3614 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Thimo_0383 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:tmb00660]
D Thimo_0382 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Thimo_3614 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Thimo_0383 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Thimo_0241 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D Thimo_0242 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D Thimo_1297 isopropylmalate/homocitrate/citramalate synthase K09011 cimA; (R)-citramalate synthase [EC:2.3.3.21]
D Thimo_2656 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Thimo_2655 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Thimo_2654 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:tmb00562]
D Thimo_1064 inositol monophosphatase/fructose-1,6-bisphosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D Thimo_0582 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:tmb00190]
D Thimo_0585 NADH:ubiquinone oxidoreductase subunit 3 (chain A) K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D Thimo_2410 NADH-quinone oxidoreductase, B subunit K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D Thimo_0586 NADH-quinone oxidoreductase, B subunit K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D Thimo_2411 NADH:ubiquinone oxidoreductase 27 kD subunit K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D Thimo_0587 NADH:ubiquinone oxidoreductase 27 kD subunit K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D Thimo_2412 NADH:ubiquinone oxidoreductase 49 kD subunit 7 K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D Thimo_0588 NADH dehydrogenase I, D subunit K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D Thimo_0589 NADH-quinone oxidoreductase, E subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D Thimo_0590 NADH-quinone oxidoreductase, F subunit K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D Thimo_0591 NADH-quinone oxidoreductase, chain G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D Thimo_2409 formate hydrogenlyase subunit 4 K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D Thimo_0592 NADH:ubiquinone oxidoreductase subunit 1 (chain H) K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D Thimo_0593 NADH-quinone oxidoreductase, chain I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D Thimo_0594 NADH:ubiquinone oxidoreductase subunit 6 (chain J) K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D Thimo_0595 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D Thimo_0596 proton-translocating NADH-quinone oxidoreductase, chain L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D Thimo_0597 proton-translocating NADH-quinone oxidoreductase, chain M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D Thimo_0598 proton-translocating NADH-quinone oxidoreductase, chain N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D Thimo_2350 NADH:ubiquinone oxidoreductase 24 kD subunit K05586 hoxE; bidirectional [NiFe] hydrogenase diaphorase subunit [EC:7.1.1.2]
D Thimo_2351 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit K05587 hoxF; bidirectional [NiFe] hydrogenase diaphorase subunit [EC:7.1.1.2]
D Thimo_2352 NADH:ubiquinone oxidoreductase chain G-like protein K05588 hoxU; bidirectional [NiFe] hydrogenase diaphorase subunit [EC:7.1.1.2]
D Thimo_0466 succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Thimo_0467 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Thimo_0464 succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D Thimo_0465 succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D Thimo_1648 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D Thimo_2286 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D Thimo_1649 cytochrome b subunit of the bc complex K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D Thimo_1650 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D Thimo_1338 cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D Thimo_1339 cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D Thimo_1341 cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D Thimo_0355 cytochrome bd-type quinol oxidase, subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D Thimo_0356 cytochrome d oxidase cyd, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D Thimo_2976 cytochrome c2 K08738 CYC; cytochrome c
D Thimo_1937 Cache domain protein K08738 CYC; cytochrome c
D Thimo_1169 proton translocating ATP synthase, F1 alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D Thimo_1171 ATP synthase, F1 beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D Thimo_1170 ATP synthase, F1 gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D Thimo_1168 ATP synthase, F1 delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D Thimo_1172 ATP synthase, F1 epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D Thimo_1165 F0F1-type ATP synthase, alpha subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Thimo_1167 ATP synthase, F0 subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D Thimo_1166 ATP synthase, F0 subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D Thimo_2264 archaeal/vacuolar-type H+-ATPase subunit A K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1]
D Thimo_1487 archaeal/vacuolar-type H+-ATPase subunit A K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1]
D Thimo_2263 archaeal/vacuolar-type H+-ATPase subunit B K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B
D Thimo_1486 archaeal/vacuolar-type H+-ATPase subunit B K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B
D Thimo_1492 archaeal/vacuolar-type H+-ATPase subunit C K02119 ATPVC; V/A-type H+/Na+-transporting ATPase subunit C
D Thimo_1485 H(+)-transporting ATP synthase, vacuolar type, subunit D K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D
D Thimo_1488 archaeal/vacuolar-type H+-ATPase subunit E K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E
D Thimo_2270 hypothetical protein K02107 ATPVG; V/A-type H+/Na+-transporting ATPase subunit G/H
D Thimo_2268 archaeal/vacuolar-type H+-ATPase subunit I K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I
D Thimo_1491 archaeal/vacuolar-type H+-ATPase subunit I K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I
D Thimo_2267 ATP synthase subunit C K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K
D Thimo_1490 F0F1-type ATP synthase, subunit c/archaeal/vacuolar-type H+-ATPase, subunit K K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K
D Thimo_1200 inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D Thimo_2915 polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms [PATH:tmb00710]
D Thimo_3339 ribulose 1,5-bisphosphate carboxylase, large subunit K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
D Thimo_0884 ribulose 1,5-bisphosphate carboxylase, large subunit K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
D Thimo_2947 ribulose 1,5-bisphosphate carboxylase, large subunit K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
D Thimo_0765 ribulose 1,5-bisphosphate carboxylase, large subunit K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
D Thimo_2948 ribulose bisphosphate carboxylase small subunit K01602 rbcS; ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39]
D Thimo_0766 ribulose bisphosphate carboxylase small subunit K01602 rbcS; ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39]
D Thimo_2174 3-phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Thimo_2175 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Thimo_3191 DhnA-type fructose-1,6-bisphosphate aldolase-like enzyme K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D Thimo_0389 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Thimo_2172 fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Thimo_2630 fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D Thimo_1547 transaldolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Thimo_2176 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Thimo_0768 transketolase, alpha subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Thimo_0769 transketolase, beta subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Thimo_1187 ribose 5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D Thimo_0666 phosphoribulokinase K00855 PRK; phosphoribulokinase [EC:2.7.1.19]
D Thimo_0582 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Thimo_3652 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D Thimo_1264 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D Thimo_2282 ATP-dependent phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D Thimo_3326 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D Thimo_3259 malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D Thimo_0239 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:tmb00680]
D Thimo_0255 coenzyme F420 hydrogenase/dehydrogenase, beta subunit K00125 fdhB; formate dehydrogenase (coenzyme F420) beta subunit [EC:1.17.98.3 1.8.98.6]
D Thimo_0223 carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D Thimo_0342 glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Thimo_2218 serine-pyruvate aminotransferase/archaeal aspartate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D Thimo_0304 lactate dehydrogenase-like oxidoreductase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D Thimo_2012 putative glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D Thimo_1323 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Thimo_1264 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D Thimo_0239 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Thimo_3191 DhnA-type fructose-1,6-bisphosphate aldolase-like enzyme K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D Thimo_0389 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Thimo_2172 fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Thimo_2630 fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D Thimo_1198 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Thimo_3072 coenzyme F420-reducing hydrogenase, beta subunit K00441 frhB; coenzyme F420 hydrogenase subunit beta [EC:1.12.98.1]
D Thimo_0253 polyferredoxin, heterodixulfide reductase subunit A K03388 hdrA2; heterodisulfide reductase subunit A2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6]
D Thimo_0248 heterodisulfide reductase, subunit B K03389 hdrB2; heterodisulfide reductase subunit B2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6]
D Thimo_0247 hypothetical protein K03390 hdrC2; heterodisulfide reductase subunit C2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6]
D Thimo_0254 coenzyme F420-reducing hydrogenase, delta subunit K14127 mvhD; F420-non-reducing hydrogenase iron-sulfur subunit [EC:1.12.99.- 1.8.98.5 1.8.98.6]
D Thimo_1934 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D Thimo_1933 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Thimo_1052 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Thimo_2112 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Thimo_1389 phosphoglycerate mutase, BPG-dependent, family 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Thimo_3160 fructose-2,6-bisphosphatase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Thimo_3374 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D Thimo_1301 phosphoglycerate dehydrogenase-like oxidoreductase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Thimo_1300 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D Thimo_3639 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:tmb00910]
D Thimo_3244 nitrogenase molybdenum-iron protein alpha chain K02586 nifD; nitrogenase molybdenum-iron protein alpha chain [EC:1.18.6.1]
D Thimo_3243 nitrogenase molybdenum-iron protein beta chain K02591 nifK; nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1]
D Thimo_3245 nitrogenase iron protein K02588 nifH; nitrogenase iron protein NifH
D Thimo_3368 hydroxylamine reductase K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D Thimo_1376 hypothetical protein K10535 hao; hydroxylamine dehydrogenase [EC:1.7.2.6]
D Thimo_3682 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Thimo_1397 NADH/NADPH-dependent glutamate synthase small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D Thimo_0091 NADH/NADPH-dependent glutamate synthase small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D Thimo_0090 glutamate synthase family protein K00284 GLU; glutamate synthase (ferredoxin) [EC:1.4.7.1]
D Thimo_0714 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D Thimo_0919 carbonic anhydrase K01674 cah; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:tmb00920]
D Thimo_1948 ATP sulfurylase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D Thimo_1205 adenylylsulfate kinase ApsK K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D Thimo_1219 adenosine phosphosulfate reductase, alpha subunit K00394 aprA; adenylylsulfate reductase, subunit A [EC:1.8.99.2]
D Thimo_1220 adenosine phosphosulfate reductase, beta subunit K00395 aprB; adenylylsulfate reductase, subunit B [EC:1.8.99.2]
D Thimo_1580 anaerobic dehydrogenase, typically selenocysteine-containing K21307 soeA; sulfite dehydrogenase (quinone) subunit SoeA [EC:1.8.5.6]
D Thimo_1581 Fe-S-cluster-containing hydrogenase subunit K21308 soeB; sulfite dehydrogenase (quinone) subunit SoeB
D Thimo_1582 DMSO reductase anchor subunit K21309 soeC; sulfite dehydrogenase (quinone) subunit SoeC
D Thimo_0143 sulfite reductase, dissimilatory-type alpha subunit K11180 dsrA; dissimilatory sulfite reductase alpha subunit [EC:1.8.1.22]
D Thimo_0144 sulfite reductase, dissimilatory-type beta subunit K11181 dsrB; dissimilatory sulfite reductase beta subunit [EC:1.8.1.22]
D Thimo_0151 NADPH-dependent glutamate synthase beta chain-like oxidoreductase K27196 dsrL; dissimilatory sulfite reductase flavoprotein subunit
D Thimo_0149 nitrate reductase gamma subunit K27187 dsrM; [DsrC]-trisulfide reductase subunit M [EC:1.8.5.10]
D Thimo_0150 Fe-S oxidoreductase K27188 dsrK; [DsrC]-trisulfide reductase subunit K [EC:1.8.5.10]
D Thimo_0152 hypothetical protein K27189 dsrJ; [DsrC]-trisulfide reductase subunit J
D Thimo_0153 Fe-S-cluster-containing hydrogenase subunit K27190 dsrO; [DsrC]-trisulfide reductase subunit O
D Thimo_0154 polysulfide reductase K27191 dsrP; [DsrC]-trisulfide reductase subunit P
D Thimo_0569 Pyridine nucleotide-disulfide oxidoreductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D Thimo_1567 NADH dehydrogenase, FAD-containing subunit K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D Thimo_2236 NAD(FAD)-dependent dehydrogenase K17229 fccB; sulfide dehydrogenase [flavocytochrome c] flavoprotein chain [EC:1.8.2.3]
D Thimo_2235 cytochrome c553 K17230 fccA; cytochrome subunit of sulfide dehydrogenase
D Thimo_1066 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D Thimo_0923 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D Thimo_1578 homoserine trans-succinylase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D Thimo_2642 O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:tmb00061]
D Thimo_0934 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D Thimo_0182 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D Thimo_0183 acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D Thimo_2647 acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D Thimo_1438 phosphopantetheine-containing protein K02078 acpP; acyl carrier protein
D Thimo_2379 acyl carrier protein K02078 acpP; acyl carrier protein
D Thimo_2381 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Thimo_2382 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Thimo_2378 beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Thimo_2380 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Thimo_1925 beta-hydroxyacyl-(acyl carrier protein) dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D Thimo_0730 beta-hydroxyacyl-(acyl carrier protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D Thimo_0437 enoyl-(acyl-carrier-protein) reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D Thimo_0427 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Thimo_2040 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:tmb00071]
D Thimo_1642 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Thimo_0427 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Thimo_2040 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Thimo_1384 Zn-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:tmb00561]
D Thimo_2012 putative glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D Thimo_2383 fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D Thimo_0558 acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D Thimo_2908 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Thimo_3687 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Thimo_1682 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D Thimo_1939 glycosyltransferase K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
C 00564 Glycerophospholipid metabolism [PATH:tmb00564]
D Thimo_3674 glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D Thimo_0558 acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D Thimo_2908 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Thimo_3687 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Thimo_1682 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D Thimo_1519 phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase K01115 PLD1_2; phospholipase D1/2 [EC:3.1.4.4]
D Thimo_3464 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D Thimo_0724 CDP-diglyceride synthetase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D Thimo_2349 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D Thimo_2220 phosphatidylserine decarboxylase precursor K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D Thimo_3564 phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D Thimo_2616 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D Thimo_0208 phosphatidylglycerophosphatase A-like protein K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D Thimo_2058 phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D Thimo_1634 phosphatidylglycerophosphate synthase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41]
C 00565 Ether lipid metabolism
D Thimo_1519 phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase K01115 PLD1_2; phospholipase D1/2 [EC:3.1.4.4]
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids [PATH:tmb01040]
D Thimo_2469 fatty-acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D Thimo_1566 lysophospholipase L1-like esterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D Thimo_1151 lysophospholipase L1-like esterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D Thimo_1598 acyl-CoA hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:tmb00230]
D Thimo_3299 ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D Thimo_2086 ADP-ribose pyrophosphatase K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-]
D Thimo_3043 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Thimo_0741 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D Thimo_3135 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Thimo_3608 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Thimo_2643 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Thimo_0189 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D Thimo_1632 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D Thimo_2452 phosphoribosylformylglycinamidine synthase, single chain form K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D Thimo_1633 phosphoribosylaminoimidazole synthetase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D Thimo_0692 phosphoribosylaminoimidazole carboxylase, PurK protein K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D Thimo_0691 phosphoribosylaminoimidazole carboxylase, PurE protein K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D Thimo_0760 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D Thimo_1468 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D Thimo_0187 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Thimo_2225 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D Thimo_1329 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Thimo_2085 haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having DD or ED K20881 yrfG; GMP/IMP 5'-nucleotidase [EC:3.1.3.-]
D Thimo_2185 uncharacterized protein, YfiH family K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D Thimo_2073 hypoxanthine-guanine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D Thimo_3598 inosine-5''-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D Thimo_1894 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Thimo_0751 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D Thimo_3599 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Thimo_0755 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D Thimo_2162 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Thimo_1213 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Thimo_1698 ribonucleotide reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D Thimo_3465 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D Thimo_0757 (p)ppGpp synthetase, RelA/SpoT family K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D Thimo_0914 hypothetical protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D Thimo_0685 exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D Thimo_1561 (p)ppGpp synthetase, RelA/SpoT family K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D Thimo_2310 hypothetical protein K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]
D Thimo_1696 hypothetical protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D Thimo_2386 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D Thimo_0867 deoxynucleoside kinase K15519 dck; deoxyadenosine/deoxycytidine kinase [EC:2.7.1.76 2.7.1.74]
D Thimo_0844 adenylate kinase family protein K00939 adk; adenylate kinase [EC:2.7.4.3]
D Thimo_0737 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D Thimo_3262 symmetrical bis(5'-nucleosyl)-tetraphosphatase K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D Thimo_1205 adenylylsulfate kinase ApsK K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D Thimo_1948 ATP sulfurylase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D Thimo_2421 putative xylanase/chitin deacetylase K16842 hpxB; allantoinase [EC:3.5.2.5]
C 00240 Pyrimidine metabolism [PATH:tmb00240]
D Thimo_0297 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Thimo_0298 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Thimo_2556 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D Thimo_2281 dihydroorotase, homodimeric type K01465 URA4; dihydroorotase [EC:3.5.2.3]
D Thimo_2557 dihydroorotase, multifunctional complex type K01465 URA4; dihydroorotase [EC:3.5.2.3]
D Thimo_3676 dihydroorotate dehydrogenase family protein K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14]
D Thimo_2558 2-polyprenylphenol hydroxylase-like oxidoreductase K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit
D Thimo_1403 dihydroorotate dehydrogenase K00226 pyrD; dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
D Thimo_0744 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D Thimo_1712 orotidine 5''-phosphate decarboxylase, subfamily 1 K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D Thimo_0721 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D Thimo_1894 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Thimo_0737 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D Thimo_2599 MAF protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D Thimo_1321 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D Thimo_1877 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D Thimo_2225 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D Thimo_1329 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Thimo_2555 pyrimidine operon attenuation protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D Thimo_3465 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D Thimo_2629 deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D Thimo_2162 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Thimo_1213 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Thimo_1698 ribonucleotide reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D Thimo_0867 deoxynucleoside kinase K15519 dck; deoxyadenosine/deoxycytidine kinase [EC:2.7.1.76 2.7.1.74]
D Thimo_2375 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D Thimo_0740 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Thimo_3607 putative thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4]
D Thimo_3375 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D Thimo_1885 nitroreductase K09019 rutE; 3-hydroxypropanoate dehydrogenase [EC:1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:tmb00250]
D Thimo_1818 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Thimo_2006 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D Thimo_1801 asparagine synthase, glutamine-hydrolyzing K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D Thimo_3334 asparagine synthase, glutamine-hydrolyzing K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D Thimo_0992 asparagine synthase, glutamine-hydrolyzing K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D Thimo_3589 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D Thimo_2218 serine-pyruvate aminotransferase/archaeal aspartate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D Thimo_3040 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D Thimo_1695 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Thimo_1071 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Thimo_2386 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D Thimo_1468 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D Thimo_2556 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D Thimo_1405 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D Thimo_1234 NAD-dependent aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D Thimo_1397 NADH/NADPH-dependent glutamate synthase small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D Thimo_0091 NADH/NADPH-dependent glutamate synthase small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D Thimo_3682 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Thimo_0297 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Thimo_0298 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Thimo_1174 glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Thimo_2643 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:tmb00260]
D Thimo_2427 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Thimo_2653 aspartate-semialdehyde dehydrogenase, gamma-proteobacterial K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Thimo_1097 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D Thimo_1296 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D Thimo_0342 glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Thimo_2218 serine-pyruvate aminotransferase/archaeal aspartate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D Thimo_0304 lactate dehydrogenase-like oxidoreductase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D Thimo_2012 putative glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D Thimo_1389 phosphoglycerate mutase, BPG-dependent, family 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Thimo_3160 fructose-2,6-bisphosphatase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Thimo_3374 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D Thimo_1301 phosphoglycerate dehydrogenase-like oxidoreductase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Thimo_1300 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D Thimo_3639 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D Thimo_1679 glycine cleavage system protein P K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D Thimo_1681 glycine cleavage system protein P K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D Thimo_1677 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Thimo_1085 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Thimo_1678 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D Thimo_2349 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D Thimo_2027 methylase involved in ubiquinone/menaquinone biosynthesis K18896 gsmt; glycine/sarcosine N-methyltransferase [EC:2.1.1.156]
D Thimo_1798 methylase involved in ubiquinone/menaquinone biosynthesis K18896 gsmt; glycine/sarcosine N-methyltransferase [EC:2.1.1.156]
D Thimo_1799 methylase involved in ubiquinone/menaquinone biosynthesis K18897 sdmt; sarcosine/dimethylglycine N-methyltransferase [EC:2.1.1.157]
D Thimo_1188 threonine ammonia-lyase, biosynthetic, long form K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D Thimo_2648 tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D Thimo_2649 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D Thimo_2111 pyridoxal-phosphate dependent TrpB-like enzyme K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D Thimo_3714 4-aminobutyrate aminotransferase family protein K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]
C 00270 Cysteine and methionine metabolism [PATH:tmb00270]
D Thimo_1066 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D Thimo_0923 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D Thimo_0495 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Thimo_1455 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D Thimo_2178 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D Thimo_1180 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D Thimo_0096 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D Thimo_3445 nucleoside phosphorylase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D Thimo_2185 uncharacterized protein, YfiH family K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D Thimo_1291 cytosine deaminase-like metal-dependent hydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D Thimo_1899 purine nucleoside phosphorylase K19696 mtiP; 5'-methylthioinosine phosphorylase [EC:2.4.2.44]
D Thimo_1290 S-methyl-5-thioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
D Thimo_2808 ribulose 1,5-bisphosphate carboxylase, large subunit K25035 rlp; S-methyl-5-thioribulose 1-phosphate isomerase [EC:5.3.3.23]
D Thimo_2179 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D Thimo_2427 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Thimo_2653 aspartate-semialdehyde dehydrogenase, gamma-proteobacterial K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Thimo_1097 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D Thimo_1578 homoserine trans-succinylase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D Thimo_2739 OAH/OAS sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D Thimo_2642 O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D Thimo_1703 branched-chain amino acid aminotransferase, group I K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Thimo_2181 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D Thimo_2550 glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D Thimo_1818 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Thimo_0239 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Thimo_1615 cysteine synthase B K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D Thimo_1301 phosphoglycerate dehydrogenase-like oxidoreductase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Thimo_1300 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:tmb00280]
D Thimo_1703 branched-chain amino acid aminotransferase, group I K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Thimo_1085 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Thimo_0135 beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D Thimo_1642 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:tmb00290]
D Thimo_1188 threonine ammonia-lyase, biosynthetic, long form K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D Thimo_1297 isopropylmalate/homocitrate/citramalate synthase K09011 cimA; (R)-citramalate synthase [EC:2.3.3.21]
D Thimo_2656 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Thimo_2655 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Thimo_2654 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D Thimo_0382 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Thimo_3614 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Thimo_0383 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Thimo_0384 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D Thimo_2371 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Thimo_1703 branched-chain amino acid aminotransferase, group I K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Thimo_3363 2-isopropylmalate synthase, bacterial type K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D Thimo_0710 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:tmb00300]
D Thimo_1097 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D Thimo_2427 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Thimo_2653 aspartate-semialdehyde dehydrogenase, gamma-proteobacterial K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Thimo_2965 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Thimo_2534 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D Thimo_1206 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D Thimo_3283 acetylornithine/succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D Thimo_1207 succinyldiaminopimelate transaminase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
D Thimo_2017 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D Thimo_3274 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D Thimo_3440 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D Thimo_3116 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D Thimo_3115 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:tmb00310]
D Thimo_0681 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D Thimo_1085 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Thimo_1642 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Thimo_1234 NAD-dependent aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D Thimo_3710 KamA family protein K01843 kamA; lysine 2,3-aminomutase [EC:5.4.3.2]
C 00220 Arginine biosynthesis [PATH:tmb00220]
D Thimo_3284 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D Thimo_1695 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Thimo_1071 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Thimo_3682 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Thimo_0297 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Thimo_0298 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Thimo_1818 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Thimo_2192 amino-acid N-acetyltransferase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]
D Thimo_3666 glutamate N-acetyltransferase/amino-acid acetyltransferase K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D Thimo_0742 acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D Thimo_0075 N-acetyl-gamma-glutamyl-phosphate reductase, common form K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D Thimo_3283 acetylornithine/succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D Thimo_2795 acetylornithine deacetylase ArgE K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:tmb00330]
D Thimo_0119 N-methylhydantoinase A/acetone carboxylase, beta subunit K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14]
D Thimo_3336 N-methylhydantoinase B/acetone carboxylase, alpha subunit K01474 hyuB; N-methylhydantoinase B [EC:3.5.2.14]
D Thimo_2563 arginine decarboxylase, biosynthetic K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D Thimo_1972 putative amidohydrolase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53]
D Thimo_0096 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D Thimo_1180 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D Thimo_0749 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D Thimo_1317 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D Thimo_1081 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D Thimo_1844 proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D Thimo_1818 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:tmb00340]
D Thimo_1261 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D Thimo_2749 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D Thimo_2387 ATP phosphoribosyltransferase, regulatory subunit K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit
D Thimo_1849 phosphoribosyl-ATP pyrophosphohydrolase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
D Thimo_1848 phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D Thimo_1847 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D Thimo_1857 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K01663 HIS7; imidazole glycerol-phosphate synthase [EC:4.3.2.10]
D Thimo_1846 imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D Thimo_1303 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Thimo_2747 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Thimo_2748 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D Thimo_0007 putative methyltransferase K18911 egtD; L-histidine Nalpha-methyltransferase [EC:2.1.1.44]
C 00350 Tyrosine metabolism [PATH:tmb00350]
D Thimo_1818 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Thimo_1303 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Thimo_2747 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Thimo_1384 Zn-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D Thimo_1234 NAD-dependent aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D Thimo_1880 uncharacterized protein, 4-oxalocrotonate tautomerase K07253 MIF; phenylpyruvate tautomerase [EC:5.3.2.1]
C 00360 Phenylalanine metabolism [PATH:tmb00360]
D Thimo_1818 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Thimo_1303 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Thimo_2747 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Thimo_1880 uncharacterized protein, 4-oxalocrotonate tautomerase K07253 MIF; phenylpyruvate tautomerase [EC:5.3.2.1]
D Thimo_3545 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D Thimo_2705 ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase K05710 hcaC; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin component
D Thimo_1223 isopropylmalate/homocitrate/citramalate synthase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
C 00380 Tryptophan metabolism [PATH:tmb00380]
D Thimo_0681 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D Thimo_1085 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Thimo_1642 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Thimo_3545 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:tmb00400]
D Thimo_0120 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D Thimo_3097 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D Thimo_1211 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D Thimo_0089 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D Thimo_0181 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D Thimo_0134 shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D Thimo_0088 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D Thimo_1876 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D Thimo_1101 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D Thimo_3650 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Thimo_1175 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D Thimo_1176 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D Thimo_2650 phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D Thimo_1177 Indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D Thimo_2648 tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D Thimo_2649 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D Thimo_2111 pyridoxal-phosphate dependent TrpB-like enzyme K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D Thimo_1302 chorismate mutase, clade 2 K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D Thimo_1304 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D Thimo_1818 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Thimo_1303 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Thimo_2747 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:tmb00410]
D Thimo_3514 L-aspartate-alpha-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D Thimo_1405 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D Thimo_3513 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
C 00430 Taurine and hypotaurine metabolism [PATH:tmb00430]
D Thimo_1405 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D Thimo_2580 gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Thimo_3040 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D Thimo_1933 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Thimo_1934 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:tmb00450]
D Thimo_0495 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Thimo_1455 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D Thimo_2424 cysteine desulfurase-like protein, SufS subfamily K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D Thimo_2447 thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D Thimo_1948 ATP sulfurylase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D Thimo_0959 protein containing C-terminal region/beta chain of methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:tmb00460]
D Thimo_2580 gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Thimo_0342 glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:tmb00470]
D Thimo_1514 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Thimo_3711 ATP-grasp enzyme, D-alanine-D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Thimo_3108 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Thimo_1623 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D Thimo_3113 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D Thimo_3274 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D Thimo_3440 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:tmb00480]
D Thimo_2580 gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Thimo_2181 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D Thimo_2550 glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D Thimo_2320 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D Thimo_1660 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D Thimo_1476 hypothetical protein K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D Thimo_0244 isocitrate dehydrogenase, NADP-dependent, monomeric type K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D Thimo_1975 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D Thimo_3039 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D Thimo_3516 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D Thimo_3038 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D Thimo_0123 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D Thimo_0096 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:tmb00540]
D Thimo_0188 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D Thimo_0731 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D Thimo_3104 UDP-3-0-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D Thimo_0729 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D Thimo_0331 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D Thimo_0732 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D Thimo_3379 tetraacyldisaccharide 4''-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D Thimo_2756 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D Thimo_1322 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D Thimo_2757 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D Thimo_3381 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D Thimo_1946 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D Thimo_0411 Lauroyl/myristoyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D Thimo_0111 Lauroyl/myristoyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D Thimo_0857 putative membrane-associated, metal-dependent hydrolase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D Thimo_0518 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D Thimo_0517 D-heptose-7-phosphate 1-kinase,D-heptose-1-phosphate adenylyltransferase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D Thimo_3686 histidinol-phosphate phosphatase family protein K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D Thimo_1944 ADP-heptose:LPS heptosyltransferase K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
C 00542 O-Antigen repeat unit biosynthesis [PATH:tmb00542]
D Thimo_2676 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:tmb00541]
D Thimo_1713 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Thimo_3138 UDP-glucose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Thimo_2879 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Thimo_3601 nucleoside-diphosphate-sugar epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D Thimo_3054 glucose-1-phosphate thymidylyltransferase, short form K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Thimo_3055 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Thimo_3053 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Thimo_2972 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D Thimo_2434 2-polyprenylphenol hydroxylase-like oxidoreductase K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D Thimo_0976 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D Thimo_0977 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D Thimo_0028 putative PLP-dependent enzyme possibly involved in cell wall biogenesis K13010 per; perosamine synthetase [EC:2.6.1.102]
D Thimo_1173 UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D Thimo_1019 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D Thimo_3602 nucleotide sugar dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D Thimo_0036 putative dehydrogenase K13016 wbpB; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335]
D Thimo_1864 putative PLP-dependent enzyme possibly involved in cell wall biogenesis K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D Thimo_0035 hypothetical protein K13018 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase [EC:2.3.1.201]
C 00550 Peptidoglycan biosynthesis [PATH:tmb00550]
D Thimo_2750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Thimo_3109 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Thimo_3110 UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D Thimo_3113 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D Thimo_3116 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D Thimo_3711 ATP-grasp enzyme, D-alanine-D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Thimo_3108 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Thimo_3115 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D Thimo_0723 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D Thimo_2641 undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Thimo_1457 membrane-associated phospholipid phosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Thimo_3114 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Thimo_3111 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D Thimo_2907 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D Thimo_1604 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Thimo_2101 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D Thimo_3173 penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D Thimo_2781 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D Thimo_3117 cell division protein FtsI/penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D Thimo_2777 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Thimo_1075 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:tmb00552]
D Thimo_2641 undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Thimo_1457 membrane-associated phospholipid phosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Thimo_2676 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D Thimo_1939 glycosyltransferase K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:tmb00543]
D Thimo_3077 hypothetical protein K16710 wcaK; colanic acid/amylovoran biosynthesis protein WcaK/AmsJ
D Thimo_2676 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D Thimo_1066 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D Thimo_3059 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase K25903 pssD; exopolysaccharide biosynthesis glucuronosyltransferase PssD
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:tmb00730]
D Thimo_1734 thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D Thimo_0071 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D Thimo_2710 cysteine desulfurase DndA K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Thimo_2492 glycine oxidase ThiO K03153 thiO; glycine oxidase [EC:1.4.3.19]
D Thimo_0763 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D Thimo_2042 putative enzyme of thiazole biosynthesis K03149 thiG; thiazole synthase [EC:2.8.1.10]
D Thimo_0070 thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D Thimo_0209 thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D Thimo_0169 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D Thimo_1804 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D Thimo_1110 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D Thimo_0844 adenylate kinase family protein K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:tmb00740]
D Thimo_0212 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D Thimo_0344 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D Thimo_1059 haloacid dehalogenase superfamily enzyme, subfamily IA K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104]
D Thimo_0211 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D Thimo_0213 riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D Thimo_1140 riboflavin kinase/FMN adenylyltransferase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D Thimo_3299 ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D Thimo_0064 polyprenyl p-hydroxybenzoate/phenylacrylic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:tmb00750]
D Thimo_2905 pyridoxamine-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D Thimo_1300 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D Thimo_1296 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D Thimo_0876 pyridoxal 5''-phosphate synthase, synthase subunit Pdx1 K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
D Thimo_0877 pyridoxal 5''-phosphate synthase, glutaminase subunit Pdx2 K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6]
C 00760 Nicotinate and nicotinamide metabolism [PATH:tmb00760]
D Thimo_2006 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D Thimo_2234 quinolinate synthetase complex, A subunit K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D Thimo_1735 nicotinate-nucleotide pyrophosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D Thimo_2225 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D Thimo_1329 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Thimo_1080 nicotinate/nicotinamide nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D Thimo_0737 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D Thimo_2189 NAD+ synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D Thimo_2432 competence/damage-inducible protein CinA-like protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D Thimo_1378 NAD-dependent protein deacetylase, SIR2 family K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D Thimo_2539 putative sugar kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D Thimo_2059 pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase component K00322 sthA; NAD(P) transhydrogenase [EC:1.6.1.1]
D Thimo_0237 NAD(P) transhydrogenase, alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D Thimo_0238 NAD/NADP transhydrogenase beta subunit K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D Thimo_1234 NAD-dependent aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:tmb00770]
D Thimo_0382 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Thimo_3614 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Thimo_0383 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Thimo_0384 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D Thimo_2371 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Thimo_3512 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D Thimo_3513 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D Thimo_1347 pantothenate kinase, type III K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D Thimo_0739 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D Thimo_0737 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D Thimo_3626 pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D Thimo_1047 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D Thimo_0338 phosphopantetheinyl transferase K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D Thimo_1703 branched-chain amino acid aminotransferase, group I K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Thimo_3514 L-aspartate-alpha-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:tmb00780]
D Thimo_3028 biotin biosynthesis protein BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D Thimo_2378 beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Thimo_2380 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Thimo_0730 beta-hydroxyacyl-(acyl carrier protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D Thimo_0437 enoyl-(acyl-carrier-protein) reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D Thimo_3029 putative pimeloyl-BioC--CoA transferase BioH K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D Thimo_3030 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D Thimo_3436 adenosylmethionine-8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D Thimo_3027 dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D Thimo_3031 biotin synthetase K01012 bioB; biotin synthase [EC:2.8.1.6]
D Thimo_0106 birA, biotin-(acetyl-CoA-carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:tmb00785]
D Thimo_2776 lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D Thimo_1346 lipoate synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D Thimo_1085 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Thimo_1087 pyruvate dehydrogenase E1 component, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D Thimo_1086 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Thimo_0680 2-oxoglutarate dehydrogenase, E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D Thimo_0681 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D Thimo_1679 glycine cleavage system protein P K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D Thimo_1681 glycine cleavage system protein P K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D Thimo_1677 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Thimo_1678 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:tmb00790]
D Thimo_1800 GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D Thimo_1783 hypothetical protein K09007 folE2; GTP cyclohydrolase IB [EC:3.5.4.16]
D Thimo_1110 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D Thimo_3046 NTP pyrophosphohydrolase K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67]
D Thimo_0559 dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D Thimo_3511 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D Thimo_0560 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D Thimo_1456 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D Thimo_2547 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D Thimo_1078 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D Thimo_2646 folylpolyglutamate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D Thimo_0212 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D Thimo_3324 aminodeoxychorismate synthase, component I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D Thimo_2377 aminodeoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D Thimo_2970 6-pyruvoyl-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D Thimo_1374 pterin-4a-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D Thimo_0562 dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein K03793 PTR1; pteridine reductase [EC:1.5.1.33]
D Thimo_0577 organic radical activating enzyme K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D Thimo_2971 queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D Thimo_3604 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D Thimo_3597 metal-dependent hydrolase, beta-lactamase superfamily II K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105]
D Thimo_0352 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D Thimo_1201 molybdenum cofactor biosynthesis protein MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D Thimo_3323 molybdopterin converting factor, large subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D Thimo_1683 molybdenum cofactor biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D Thimo_1684 molybdopterin biosynthesis enzyme K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D Thimo_0419 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:tmb00670]
D Thimo_1078 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D Thimo_0618 5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D Thimo_0342 glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Thimo_1632 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D Thimo_0187 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Thimo_1246 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D Thimo_1677 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Thimo_0495 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Thimo_3375 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D Thimo_2180 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D Thimo_1190 5,10-methenyltetrahydrofolate synthetase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:tmb00860]
D Thimo_2078 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Thimo_3131 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D Thimo_0069 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D Thimo_0133 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D Thimo_1359 porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D Thimo_1360 uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D Thimo_3618 uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D Thimo_0836 coproporphyrinogen III oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D Thimo_0426 oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D Thimo_2790 oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D Thimo_2123 protoporphyrinogen oxidase K00231 PPOX; protoporphyrinogen/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15]
D Thimo_1839 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D Thimo_2640 uroporphyrin-III C-methyltransferase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D Thimo_3555 precorrin-2 C20-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151]
D Thimo_3554 precorrin-3B C17-methyltransferase K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272]
D Thimo_3550 precorrin-4 C11-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271]
D Thimo_3551 cobalamin biosynthesis protein CbiG K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12]
D Thimo_0503 precorrin-6A synthase, deacetylating K02228 cobF; precorrin-6A synthase [EC:2.1.1.152]
D Thimo_3553 precorrin-6x reductase K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106]
D Thimo_3552 precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit,precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196]
D Thimo_3556 precorrin isomerase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60]
D Thimo_0155 cobyrinic acid a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D Thimo_0500 cobyrinic acid a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D Thimo_3406 cobyric acid synthase CobQ K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D Thimo_0473 cobyric acid synthase CobQ K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D Thimo_0484 cobyric acid synthase CobQ K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D Thimo_0501 cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D Thimo_3405 L-threonine-O-3-phosphate decarboxylase K02225 cobC1; cobalamin biosynthesis protein CobC
D Thimo_0502 adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D Thimo_3122 cobalamin 5''-phosphate synthase/cobalamin synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D Thimo_3407 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D Thimo_3123 fructose-2,6-bisphosphatase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73]
D Thimo_3560 fructose-2,6-bisphosphatase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73]
D Thimo_2772 magnesium chelatase, H subunit K03403 chlH; magnesium chelatase subunit H [EC:6.6.1.1]
D Thimo_3023 magnesium chelatase, H subunit K03403 chlH; magnesium chelatase subunit H [EC:6.6.1.1]
D Thimo_3014 magnesium chelatase ATPase subunit D K03404 chlD; magnesium chelatase subunit D [EC:6.6.1.1]
D Thimo_3015 magnesium chelatase ATPase subunit I K03405 chlI; magnesium chelatase subunit I [EC:6.6.1.1]
D Thimo_3021 magnesium protoporphyrin O-methyltransferase K03428 bchM; magnesium-protoporphyrin O-methyltransferase [EC:2.1.1.11]
D Thimo_0493 magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase K04034 bchE; anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase [EC:1.21.98.3]
D Thimo_2791 bacteriochlorophyll 4-vinyl reductase K04036 bchJ; divinyl protochlorophyllide a 8-vinyl-reductase [EC:1.-.-.-]
D Thimo_3022 light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein K04037 chlL; light-independent protochlorophyllide reductase subunit L [EC:1.3.7.7]
D Thimo_3025 light-independent protochlorophyllide reductase, N subunit K04038 chlN; light-independent protochlorophyllide reductase subunit N [EC:1.3.7.7]
D Thimo_3024 light-independent protochlorophyllide reductase, B subunit K04039 chlB; light-independent protochlorophyllide reductase subunit B [EC:1.3.7.7]
D Thimo_0921 bacteriochlorophyll/chlorophyll synthetase K04040 chlG; chlorophyll/bacteriochlorophyll a synthase [EC:2.5.1.62 2.5.1.133]
D Thimo_3005 chlorophyllide reductase iron protein subunit X K11333 bchX; 3,8-divinyl chlorophyllide a/chlorophyllide a reductase subunit X [EC:1.3.7.14 1.3.7.15]
D Thimo_3004 chlorophyllide reductase subunit Y K11334 bchY; 3,8-divinyl chlorophyllide a/chlorophyllide a reductase subunit Y [EC:1.3.7.14 1.3.7.15]
D Thimo_3003 chlorophyllide reductase subunit Z K11335 bchZ; 3,8-divinyl chlorophyllide a/chlorophyllide a reductase subunit Z [EC:1.3.7.14 1.3.7.15]
D Thimo_3026 2-vinyl bacteriochlorophyllide hydratase K11336 bchF; 3-vinyl bacteriochlorophyllide hydratase [EC:4.2.1.165]
D Thimo_3006 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase K11337 bchC; bacteriochlorophyllide a dehydrogenase [EC:1.1.1.396]
D Thimo_0922 geranylgeranyl reductase family protein K10960 chlP; geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase [EC:1.3.1.83 1.3.1.111]
D Thimo_2049 bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1]
D Thimo_2050 bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1]
D Thimo_2955 bacterioferritin (cytochrome b1) K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:tmb00130]
D Thimo_1045 4-hydroxybenzoate polyprenyl transferase, proteobacterial K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D Thimo_1365 UbiD family decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D Thimo_0064 polyprenyl p-hydroxybenzoate/phenylacrylic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D Thimo_1197 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D Thimo_2283 ubiquinone biosynthesis O-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D Thimo_3261 ubiquinone biosynthesis O-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D Thimo_1196 2-polyprenyl-6-methoxyphenol 4-hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D Thimo_0057 ubiquinone/menaquinone biosynthesis methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D Thimo_1181 ubiquinone biosynthesis protein COQ7 K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D Thimo_3311 isochorismate synthase family protein K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D Thimo_3312 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D Thimo_0879 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20]
D Thimo_3315 o-succinylbenzoic acid synthetase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D Thimo_0883 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D Thimo_3313 dihydroxynaphthoate synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D Thimo_3316 putative thioesterase K12073 E3.1.2.28; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D Thimo_3314 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D Thimo_1383 NAD(P)H:quinone oxidoreductase, type IV K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D Thimo_1636 NAD(P)H:quinone oxidoreductase, type IV K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:tmb00900]
D Thimo_0763 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D Thimo_0725 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D Thimo_1325 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D Thimo_3133 4-diphosphocytidyl-2C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D Thimo_1326 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D Thimo_0734 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D Thimo_2491 (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D Thimo_1642 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Thimo_0064 polyprenyl p-hydroxybenzoate/phenylacrylic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D Thimo_0887 isopentenyl-diphosphate delta-isomerase, type 1 K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D Thimo_1784 geranylgeranyl pyrophosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D Thimo_3008 geranylgeranyl pyrophosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D Thimo_1313 geranylgeranyl pyrophosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D Thimo_0723 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D Thimo_0922 geranylgeranyl reductase family protein K10960 chlP; geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase [EC:1.3.1.83 1.3.1.111]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis [PATH:tmb00906]
D Thimo_3011 phytoene/squalene synthetase K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D Thimo_2284 phytoene/squalene synthetase K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D Thimo_3012 phytoene desaturase K10027 crtI; phytoene desaturase [EC:1.3.99.26 1.3.99.28 1.3.99.29 1.3.99.31]
D Thimo_3010 putative secreted hydrolase K09844 crtC; carotenoid 1,2-hydratase [EC:4.2.1.131]
D Thimo_3009 phytoene desaturase K09845 crtD; 1-hydroxycarotenoid 3,4-desaturase [EC:1.3.99.27]
D Thimo_3007 putative O-methyltransferase K09846 crtF; demethylspheroidene O-methyltransferase [EC:2.1.1.210]
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D Thimo_1547 transaldolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Thimo_2176 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Thimo_0768 transketolase, alpha subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Thimo_0769 transketolase, beta subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:tmb00523]
D Thimo_3054 glucose-1-phosphate thymidylyltransferase, short form K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Thimo_3055 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Thimo_3053 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Thimo_2972 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
D Thimo_3311 isochorismate synthase family protein K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
C 01055 Biosynthesis of vancomycin group antibiotics
D Thimo_3055 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
D Thimo_2709 beta-lactamase class A K17836 penP; beta-lactamase class A [EC:3.5.2.6]
C 00332 Carbapenem biosynthesis [PATH:tmb00332]
D Thimo_1317 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D Thimo_1081 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:tmb00261]
D Thimo_1948 ATP sulfurylase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D Thimo_2427 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Thimo_2653 aspartate-semialdehyde dehydrogenase, gamma-proteobacterial K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Thimo_2965 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Thimo_2534 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:tmb00521]
D Thimo_0415 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D Thimo_3043 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Thimo_0741 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D Thimo_1064 inositol monophosphatase/fructose-1,6-bisphosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D Thimo_3054 glucose-1-phosphate thymidylyltransferase, short form K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Thimo_3055 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Thimo_3053 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Thimo_2972 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D Thimo_0415 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:tmb00525]
D Thimo_3054 glucose-1-phosphate thymidylyltransferase, short form K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Thimo_3055 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:tmb00401]
D Thimo_1304 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D Thimo_1818 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Thimo_1303 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Thimo_2747 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D Thimo_3650 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Thimo_1175 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D Thimo_2381 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Thimo_2380 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Thimo_0437 enoyl-(acyl-carrier-protein) reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics [PATH:tmb00998]
D Thimo_1438 phosphopantetheine-containing protein K02078 acpP; acyl carrier protein
D Thimo_2379 acyl carrier protein K02078 acpP; acyl carrier protein
D Thimo_3713 2,3-diaminopropionate biosynthesis protein SbnA K21949 sbnA; N-(2-amino-2-carboxyethyl)-L-glutamate synthase [EC:2.5.1.140]
C 00999 Biosynthesis of various plant secondary metabolites [PATH:tmb00999]
D Thimo_2178 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D Thimo_0134 shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
D Thimo_3713 2,3-diaminopropionate biosynthesis protein SbnA K21949 sbnA; N-(2-amino-2-carboxyethyl)-L-glutamate synthase [EC:2.5.1.140]
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:tmb00362]
D Thimo_1223 isopropylmalate/homocitrate/citramalate synthase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
D Thimo_1642 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation [PATH:tmb00627]
D Thimo_1637 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D Thimo_2589 NAD-dependent aldehyde dehydrogenase K00141 xylC; benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28]
D Thimo_0064 polyprenyl p-hydroxybenzoate/phenylacrylic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:tmb00625]
D Thimo_1384 Zn-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D Thimo_3243 nitrogenase molybdenum-iron protein beta chain K02591 nifK; nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1]
D Thimo_3245 nitrogenase iron protein K02588 nifH; nitrogenase iron protein NifH
D Thimo_3244 nitrogenase molybdenum-iron protein alpha chain K02586 nifD; nitrogenase molybdenum-iron protein alpha chain [EC:1.18.6.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation [PATH:tmb00623]
D Thimo_2589 NAD-dependent aldehyde dehydrogenase K00141 xylC; benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28]
D Thimo_2585 FAD/FMN-dependent dehydrogenase K05797 pchF; 4-cresol dehydrogenase (hydroxylating) flavoprotein subunit [EC:1.17.9.1]
C 00622 Xylene degradation [PATH:tmb00622]
D Thimo_2589 NAD-dependent aldehyde dehydrogenase K00141 xylC; benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28]
D Thimo_1223 isopropylmalate/homocitrate/citramalate synthase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
C 00633 Nitrotoluene degradation [PATH:tmb00633]
D Thimo_0402 NADH:flavin oxidoreductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
D Thimo_2089 NADH:flavin oxidoreductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
D Thimo_3340 Ni,Fe-hydrogenase I large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D Thimo_3236 Ni,Fe-hydrogenase I large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D Thimo_0777 Ni,Fe-hydrogenase I large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D Thimo_3343 hydrogenase (NiFe) small subunit HydA K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D Thimo_3235 hydrogenase (NiFe) small subunit HydA K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D Thimo_0774 hydrogenase (NiFe) small subunit HydA K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D Thimo_3271 hypothetical protein K23549 hupV; uptake hydrogenase large subunit [EC:1.12.99.6]
D Thimo_0223 carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D Thimo_0143 sulfite reductase, dissimilatory-type alpha subunit K11180 dsrA; dissimilatory sulfite reductase alpha subunit [EC:1.8.1.22]
D Thimo_0144 sulfite reductase, dissimilatory-type beta subunit K11181 dsrB; dissimilatory sulfite reductase beta subunit [EC:1.8.1.22]
D Thimo_0151 NADPH-dependent glutamate synthase beta chain-like oxidoreductase K27196 dsrL; dissimilatory sulfite reductase flavoprotein subunit
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
D Thimo_3163 nicotinamidase-like amidase K23359 biuH; biuret amidohydrolase [EC:3.5.1.84]
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
D Thimo_1223 isopropylmalate/homocitrate/citramalate synthase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
C 00626 Naphthalene degradation [PATH:tmb00626]
D Thimo_1384 Zn-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:tmb03020]
D Thimo_2867 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Thimo_2866 DNA-directed RNA polymerase, beta'' subunit, predominant form K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Thimo_2834 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Thimo_0756 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:tmb03010]
D Thimo_1878 ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D Thimo_0719 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D Thimo_2854 ribosomal protein S3, bacterial type K02982 RP-S3; small subunit ribosomal protein S3
D Thimo_2835 ribosomal protein S4, bacterial/organelle type K02986 RP-S4; small subunit ribosomal protein S4
D Thimo_2843 ribosomal protein S5, bacterial/organelle type K02988 RP-S5; small subunit ribosomal protein S5
D Thimo_1509 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D Thimo_2864 ribosomal protein S7, bacterial/organelle K02992 RP-S7; small subunit ribosomal protein S7
D Thimo_2846 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D Thimo_1184 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D Thimo_2861 ribosomal protein S10, bacterial/organelle K02946 RP-S10; small subunit ribosomal protein S10
D Thimo_2836 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D Thimo_2865 ribosomal protein S12, bacterial/organelle K02950 RP-S12; small subunit ribosomal protein S12
D Thimo_2837 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D Thimo_2847 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D Thimo_0706 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D Thimo_2132 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D Thimo_2851 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D Thimo_1510 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D Thimo_2856 ribosomal protein S19, bacterial/organelle K02965 RP-S19; small subunit ribosomal protein S19
D Thimo_2657 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D Thimo_0555 ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D Thimo_2870 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D Thimo_2857 ribosomal protein L2, bacterial/organellar K02886 RP-L2; large subunit ribosomal protein L2
D Thimo_2860 50S ribosomal protein L3, bacterial K02906 RP-L3; large subunit ribosomal protein L3
D Thimo_2859 50S ribosomal protein L4, bacterial/organelle K02926 RP-L4; large subunit ribosomal protein L4
D Thimo_2848 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D Thimo_2845 ribosomal protein L6, bacterial type K02933 RP-L6; large subunit ribosomal protein L6
D Thimo_2868 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D Thimo_1512 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D Thimo_2869 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D Thimo_2871 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D Thimo_1183 ribosomal protein L13, bacterial type K02871 RP-L13; large subunit ribosomal protein L13
D Thimo_2850 ribosomal protein L14, bacterial/organelle K02874 RP-L14; large subunit ribosomal protein L14
D Thimo_2841 ribosomal protein L15, bacterial/organelle K02876 RP-L15; large subunit ribosomal protein L15
D Thimo_2853 ribosomal protein L16, bacterial/organelle K02878 RP-L16; large subunit ribosomal protein L16
D Thimo_2833 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D Thimo_2844 ribosomal protein L18, bacterial type K02881 RP-L18; large subunit ribosomal protein L18
D Thimo_2129 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D Thimo_2825 ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D Thimo_1314 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D Thimo_2855 ribosomal protein L22, bacterial type K02890 RP-L22; large subunit ribosomal protein L22
D Thimo_2858 ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D Thimo_2849 ribosomal protein L24, bacterial/organelle K02895 RP-L24; large subunit ribosomal protein L24
D Thimo_3136 ribosomal protein L25, Ctc-form K02897 RP-L25; large subunit ribosomal protein L25
D Thimo_1315 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D Thimo_0712 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D Thimo_2852 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D Thimo_2842 ribosomal protein L30, bacterial/organelle K02907 RP-L30; large subunit ribosomal protein L30
D Thimo_0079 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D Thimo_2384 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D Thimo_0711 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D Thimo_2826 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D Thimo_2839 ribosomal protein L36, bacterial type K02919 RP-L36; large subunit ribosomal protein L36
D Thimo_1035 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Thimo_3309 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Thimo_1038 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Thimo_3306 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Thimo_1039 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Thimo_3305 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:tmb00970]
D Thimo_3419 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Thimo_1037 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Thimo_2261 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Thimo_3307 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Thimo_2031 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Thimo_0620 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Thimo_3095 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Thimo_3150 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Thimo_1817 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Thimo_0435 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Thimo_2364 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D Thimo_1185 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Thimo_3134 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Thimo_3418 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Thimo_3509 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Thimo_2615 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Thimo_2877 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Thimo_2039 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Thimo_0621 tRNA-His K14226 tRNA-His; tRNA His
D Thimo_1036 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Thimo_3308 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Thimo_0519 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Thimo_0584 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Thimo_1056 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Thimo_2333 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Thimo_2357 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Thimo_0622 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Thimo_0888 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Thimo_2628 tRNA-Met K14230 tRNA-Met; tRNA Met
D Thimo_1599 tRNA-Met K14230 tRNA-Met; tRNA Met
D Thimo_0551 tRNA-Met K14230 tRNA-Met; tRNA Met
D Thimo_2035 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Thimo_0505 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Thimo_0619 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Thimo_1312 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Thimo_1148 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Thimo_2425 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Thimo_2619 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Thimo_3462 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Thimo_2876 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Thimo_1782 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Thimo_2493 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Thimo_2874 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D Thimo_2878 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Thimo_0434 tRNA-Val K14237 tRNA-Val; tRNA Val
D Thimo_2829 tRNA-Val K14237 tRNA-Val; tRNA Val
D Thimo_2893 tRNA-Val K14237 tRNA-Val; tRNA Val
D Thimo_2078 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Thimo_2786 glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Thimo_2787 glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D Thimo_2785 glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D Thimo_2081 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D Thimo_2428 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Thimo_3047 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Thimo_3684 glycyl-tRNA synthetase, tetrameric type, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D Thimo_3685 glycyl-tRNA synthetase, tetrameric type, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D Thimo_2828 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Thimo_2330 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Thimo_0329 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Thimo_0959 protein containing C-terminal region/beta chain of methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Thimo_1246 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D Thimo_3328 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Thimo_1084 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Thimo_1139 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Thimo_1955 lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Thimo_1740 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Thimo_1924 prolyl-tRNA synthetase, family II K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Thimo_1890 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Thimo_2824 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Thimo_2823 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Thimo_1034 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Thimo_0973 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:tmb03060]
D Thimo_2840 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D Thimo_2873 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D Thimo_0583 protein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D Thimo_1062 protein-export membrane protein, SecD/SecF family K03072 secD; preprotein translocase subunit SecD
D Thimo_1063 protein-export membrane protein, SecD/SecF family K03074 secF; preprotein translocase subunit SecF
D Thimo_1061 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D Thimo_3702 preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Thimo_3665 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Thimo_3673 protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D Thimo_0513 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Thimo_2005 Bacterial signal recognition particle RNA K01983 ffs; SRP RNA
D Thimo_3622 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Thimo_1850 twin arginine-targeting protein translocase, TatA/E family K03116 tatA; sec-independent protein translocase protein TatA
D Thimo_1851 twin arginine-targeting protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB
D Thimo_1852 twin arginine targeting protein translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
D Thimo_1828 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Thimo_1138 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:tmb04122]
D Thimo_2710 cysteine desulfurase DndA K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Thimo_2638 putative redox protein, regulator of disulfide bond formation K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D Thimo_0147 sulfur relay protein TusB/DsrH K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D Thimo_0146 sulfur relay protein TusC/DsrF K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D Thimo_0145 sulfur relay protein TusD/DsrE K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D Thimo_1395 sulfur relay protein, TusE/DsrC/DsvC family K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D Thimo_3365 sulfur relay protein, TusE/DsrC/DsvC family K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D Thimo_0417 sulfur relay protein, TusE/DsrC/DsvC family K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D Thimo_2095 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D Thimo_3323 molybdopterin converting factor, large subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D Thimo_0352 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D Thimo_1685 molybdopterin converting factor, small subunit K03636 moaD; sulfur-carrier protein
D Thimo_3127 dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D Thimo_1201 molybdenum cofactor biosynthesis protein MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D Thimo_1683 molybdenum cofactor biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D Thimo_2041 thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein
C 03050 Proteasome
C 03018 RNA degradation [PATH:tmb03018]
D Thimo_1462 NTP pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D Thimo_0531 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
D Thimo_2084 DNA/RNA helicase, superfamily II K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D Thimo_1323 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Thimo_0707 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D Thimo_1922 DNA/RNA helicase, superfamily II K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Thimo_2332 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D Thimo_2134 DNA/RNA helicase, superfamily II K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D Thimo_0334 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Thimo_3098 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Thimo_2082 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D Thimo_2536 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Thimo_0175 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Thimo_2392 RNA chaperone Hfq K03666 hfq; host factor-I protein
D Thimo_2915 polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D Thimo_3510 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:tmb03030]
D Thimo_3662 DNA polymerase III epsilon subunit-like 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Thimo_1318 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Thimo_1292 DNA polymerase III epsilon subunit-like 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Thimo_3768 DNA polymerase III epsilon subunit-like 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Thimo_2289 DNA-directed DNA polymerase III PolC K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Thimo_2374 DNA polymerase III, delta'' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Thimo_1082 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Thimo_2319 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D Thimo_0004 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Thimo_1513 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D Thimo_0553 DNA primase, catalytic core K02316 dnaG; DNA primase [EC:2.7.7.101]
D Thimo_2974 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Thimo_2369 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D Thimo_0733 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D Thimo_2592 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Thimo_0917 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:tmb03410]
D Thimo_1808 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D Thimo_1862 uracil DNA glycosylase superfamily protein K10800 SMUG1; single-strand selective monofunctional uracil DNA glycosylase [EC:3.2.2.-]
D Thimo_2037 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D Thimo_3629 formamidopyrimidine-DNA glycosylase Fpg K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D Thimo_1591 formamidopyrimidine-DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D Thimo_3362 uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D Thimo_3442 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D Thimo_2592 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Thimo_0455 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Thimo_0917 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:tmb03420]
D Thimo_2365 transcription-repair coupling factor Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D Thimo_2142 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D Thimo_2584 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D Thimo_1819 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D Thimo_2617 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
D Thimo_0076 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Thimo_2592 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Thimo_0917 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:tmb03430]
D Thimo_2109 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Thimo_2394 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Thimo_0076 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Thimo_2128 exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D Thimo_0612 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D Thimo_1785 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D Thimo_0455 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Thimo_2974 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Thimo_2289 DNA-directed DNA polymerase III PolC K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Thimo_0004 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Thimo_1082 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Thimo_2374 DNA polymerase III, delta'' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Thimo_3662 DNA polymerase III epsilon subunit-like 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Thimo_1318 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Thimo_1292 DNA polymerase III epsilon subunit-like 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Thimo_3768 DNA polymerase III epsilon subunit-like 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Thimo_2319 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D Thimo_0917 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:tmb03440]
D Thimo_0455 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Thimo_2974 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Thimo_1832 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D Thimo_2003 recombination protein RecR K06187 recR; recombination protein RecR
D Thimo_2430 protein RecA K03553 recA; recombination protein RecA
D Thimo_1621 RecA/RadA recombinase K03553 recA; recombination protein RecA
D Thimo_2592 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Thimo_3611 Holliday junction DNA helicase, RuvA subunit K03550 ruvA; holliday junction DNA helicase RuvA
D Thimo_2736 Holliday junction DNA helicase, RuvB subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D Thimo_3610 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D Thimo_1044 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D Thimo_2316 exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D Thimo_2317 exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D Thimo_2315 exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D Thimo_2289 DNA-directed DNA polymerase III PolC K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Thimo_0004 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Thimo_1082 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Thimo_2374 DNA polymerase III, delta'' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Thimo_3662 DNA polymerase III epsilon subunit-like 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Thimo_1318 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Thimo_1292 DNA polymerase III epsilon subunit-like 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Thimo_3768 DNA polymerase III epsilon subunit-like 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Thimo_2319 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D Thimo_2397 primosomal protein N'' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:tmb02010]
D Thimo_0614 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D Thimo_3182 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D Thimo_0615 molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D Thimo_3181 ABC-type molybdate transport system, permease component K02018 modB; molybdate transport system permease protein
D Thimo_0616 molybdenum ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D Thimo_3180 ABC-type spermidine/putrescine transport system, ATPase component K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D Thimo_1760 ABC-type Fe3+ transport system, periplasmic component K02012 afuA; iron(III) transport system substrate-binding protein
D Thimo_1761 ABC-type Fe3+ transport system, permease component K02011 afuB; iron(III) transport system permease protein
D Thimo_1762 ABC-type spermidine/putrescine transport system, ATPase component K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D Thimo_0945 spermidine/putrescine-binding periplasmic protein K11073 potF; putrescine transport system substrate-binding protein
D Thimo_0942 ABC-type spermidine/putrescine transport system, permease component II K11074 potI; putrescine transport system permease protein
D Thimo_0943 ABC-type spermidine/putrescine transport system, permease component I K11075 potH; putrescine transport system permease protein
D Thimo_0944 spermidine/putrescine ABC transporter ATP-binding subunit K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D Thimo_3659 ABC-type proline/glycine betaine transport system, periplasmic component K02002 proX; glycine betaine/proline transport system substrate-binding protein
D Thimo_3658 ABC-type proline/glycine betaine transport system, permease component K02001 proW; glycine betaine/proline transport system permease protein
D Thimo_3657 glycine betaine/L-proline transport ATP binding subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D Thimo_3430 ATPase component of ABC-type sugar transporter K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Thimo_3433 ABC-type sugar transport system, periplasmic component K10236 thuE; trehalose/maltose transport system substrate-binding protein
D Thimo_3432 permease component of ABC-type sugar transporter K10237 thuF; trehalose/maltose transport system permease protein
D Thimo_3431 ABC-type sugar transport system, permease component K10238 thuG; trehalose/maltose transport system permease protein
D Thimo_0131 ABC-type transport system involved in resistance to organic solvents, auxiliary component K07323 mlaC; phospholipid transport system substrate-binding protein
D Thimo_2752 ABC-type transport system involved in resistance to organic solvents, auxiliary component K07323 mlaC; phospholipid transport system substrate-binding protein
D Thimo_2753 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D Thimo_1568 mce related protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D Thimo_2754 conserved hypothetical integral membrane protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D Thimo_1107 conserved hypothetical integral membrane protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D Thimo_2751 putative NTP binding protein (contains STAS domain) K07122 mlaB; phospholipid transport system transporter-binding protein
D Thimo_2755 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D Thimo_1106 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D Thimo_2529 ABC-type phosphate transport system, periplasmic component K02040 pstS; phosphate transport system substrate-binding protein
D Thimo_1152 phosphate ABC transporter, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D Thimo_1156 phosphate ABC transporter, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D Thimo_2528 phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein
D Thimo_1153 phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein
D Thimo_2527 phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein
D Thimo_1154 phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein
D Thimo_2526 phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Thimo_1155 phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Thimo_1544 periplasmic component of amino acid ABC-type transporter/signal transduction system K09969 aapJ; general L-amino acid transport system substrate-binding protein
D Thimo_1543 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family K09970 aapQ; general L-amino acid transport system permease protein
D Thimo_1542 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family K09971 aapM; general L-amino acid transport system permease protein
D Thimo_1536 ABC-type polar amino acid transport system, ATPase component K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1]
D Thimo_2512 ABC-type metal ion transport system, periplasmic component/surface adhesin K09815 znuA; zinc transport system substrate-binding protein
D Thimo_0042 ABC-type metal ion transport system, periplasmic component/surface adhesin K09815 znuA; zinc transport system substrate-binding protein
D Thimo_2510 ABC-type Mn2+/Zn2+ transport system, permease component K09816 znuB; zinc transport system permease protein
D Thimo_0040 ABC-type Mn2+/Zn2+ transport system, permease component K09816 znuB; zinc transport system permease protein
D Thimo_2511 ATPase component of Mn/Zn ABC-type transporter K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D Thimo_0041 ATPase component of Mn/Zn ABC-type transporter K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D Thimo_1255 ABC-type metal ion transport system, periplasmic component/surface adhesin K11707 troA; manganese/zinc/iron transport system substrate-binding protein
D Thimo_1253 ABC-type Mn2+/Zn2+ transport system, permease component K11708 troC; manganese/zinc/iron transport system permease protein
D Thimo_1252 ABC-type Mn2+/Zn2+ transport system, permease component K11709 troD; manganese/zinc/iron transport system permease protein
D Thimo_1254 ATPase component of Mn/Zn ABC-type transporter K11710 troB; manganese/zinc/iron transport system ATP- binding protein [EC:7.2.2.5]
D Thimo_0931 ABC-type Co2+ transport system, permease component K02007 cbiM; cobalt/nickel transport system permease protein
D Thimo_0929 cobalt ABC transporter, permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D Thimo_0928 ABC-type cobalt transport system, ATPase component K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D Thimo_0932 ABC-type Co2+ transport system, periplasmic component K10094 cbiK; nickel transport protein
D Thimo_0930 hypothetical protein K16915 cbiL; nickel transport protein
D Thimo_0194 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein
D Thimo_0193 lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D Thimo_1355 heme exporter protein CcmD K02196 ccmD; heme exporter protein D
D Thimo_1356 ABC-type transport system involved in cytochrome c biogenesis, permease component K02195 ccmC; heme exporter protein C
D Thimo_1357 heme exporter protein CcmB K02194 ccmB; heme exporter protein B
D Thimo_1358 heme ABC exporter, ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D Thimo_0504 putative permease K07091 lptF; lipopolysaccharide export system permease protein
D Thimo_2321 putative permease K11720 lptG; lipopolysaccharide export system permease protein
D Thimo_2760 ABC-type (unclassified) transport system, ATPase component K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D Thimo_3620 cell division protein K09811 ftsX; cell division transport system permease protein
D Thimo_3621 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D Thimo_3378 lipid A export permease/ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D Thimo_2962 fused permease/ATPase component of ABC transporter involved in Fe-S cluster assembly K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D Thimo_0359 cysteine export CydDC family ABC transporter permease subunit/ATP-binding protein CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D Thimo_0358 cysteine export CydDC family ABC transporter permease subunit/ATP-binding protein CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
C 02060 Phosphotransferase system (PTS) [PATH:tmb02060]
D Thimo_2768 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D Thimo_2767 phosphotransferase system HPr (HPr) family protein K02784 ptsH; phosphocarrier protein HPr
D Thimo_2766 phosphotransferase system, mannose/fructose-specific component IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D Thimo_1463 phosphoenolpyruvate-protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D Thimo_2763 phosphotransferase system mannitol/fructose-specifc IIA component (Ntr-type) K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:tmb03070]
D Thimo_1100 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D Thimo_0652 type II secretory pathway, component PulD K02453 gspD; general secretion pathway protein D
D Thimo_0054 general secretion pathway protein D K02453 gspD; general secretion pathway protein D
D Thimo_0045 type II secretory pathway, component PulF K02455 gspF; general secretion pathway protein F
D Thimo_0046 general secretion pathway protein G K02456 gspG; general secretion pathway protein G
D Thimo_0047 general secretion pathway protein H K02457 gspH; general secretion pathway protein H
D Thimo_0048 prepilin-type N-terminal cleavage/methylation domain-containing protein K02458 gspI; general secretion pathway protein I
D Thimo_0049 prepilin-type N-terminal cleavage/methylation domain-containing protein K02459 gspJ; general secretion pathway protein J
D Thimo_0050 type II secretory pathway, component PulK K02460 gspK; general secretion pathway protein K
D Thimo_0051 Tfp pilus assembly protein PilN K02461 gspL; general secretion pathway protein L
D Thimo_0052 General secretion pathway protein M K02462 gspM; general secretion pathway protein M
D Thimo_0044 general secretory pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D Thimo_0649 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D Thimo_1062 protein-export membrane protein, SecD/SecF family K03072 secD; preprotein translocase subunit SecD
D Thimo_1063 protein-export membrane protein, SecD/SecF family K03074 secF; preprotein translocase subunit SecF
D Thimo_2873 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D Thimo_0583 protein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D Thimo_2840 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D Thimo_1061 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D Thimo_3702 preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Thimo_3665 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Thimo_3622 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Thimo_3673 protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D Thimo_0513 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Thimo_1850 twin arginine-targeting protein translocase, TatA/E family K03116 tatA; sec-independent protein translocase protein TatA
D Thimo_1851 twin arginine-targeting protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB
D Thimo_1852 twin arginine targeting protein translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
D Thimo_3750 transglycosylase family protein K03194 virB1; type IV secretion system protein VirB1
D Thimo_3751 type IV secretory pathway, VirB2 component (pilin) K03197 virB2; type IV secretion system protein VirB2
D Thimo_3752 type IV secretory pathway, VirB3 component K03198 virB3; type IV secretion system protein VirB3
D Thimo_3754 Type IV secretion system protein K03200 virB5; type IV secretion system protein VirB5
D Thimo_3759 type IV secretory pathway, VirB9 component K03204 virB9; type IV secretion system protein VirB9
D Thimo_3756 type IV secretory pathway, VirB6 component K03201 virB6; type IV secretion system protein VirB6
D Thimo_3758 type IV secretory pathway, component VirB8 K03203 virB8; type IV secretion system protein VirB8
D Thimo_3760 type IV secretory pathway, VirB10 component K03195 virB10; type IV secretion system protein VirB10
D Thimo_3753 type IV secretory pathway, VirB4 component K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D Thimo_3761 ATPase, type IV secretory pathway VirB11 component like protein K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D Thimo_3762 type IV secretory pathway, VirD4 component K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:tmb02020]
D Thimo_3296 phosphate regulon sensor kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Thimo_2145 histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Thimo_3297 phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D Thimo_1110 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D Thimo_2146 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K07776 regX3; two-component system, OmpR family, response regulator RegX3
D Thimo_2529 ABC-type phosphate transport system, periplasmic component K02040 pstS; phosphate transport system substrate-binding protein
D Thimo_1152 phosphate ABC transporter, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D Thimo_1156 phosphate ABC transporter, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D Thimo_3196 signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D Thimo_3197 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K07660 phoP; two-component system, OmpR family, response regulator PhoP
D Thimo_1826 periplasmic serine protease, Do/DeqQ family K04771 degP; serine protease Do [EC:3.4.21.107]
D Thimo_2063 signal transduction histidine kinase K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D Thimo_2062 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB
D Thimo_3426 histidine kinase,HAMP domain-containing protein,histidine kinase K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D Thimo_3427 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K07664 baeR; two-component system, OmpR family, response regulator BaeR
D Thimo_0263 flagellin/flagellar hook associated protein K02406 fliC; flagellin
D Thimo_0287 RNA polymerase sigma factor, FliA/WhiG family K02405 fliA; RNA polymerase sigma factor FliA
D Thimo_0294 flagellar motor component K02556 motA; chemotaxis protein MotA
D Thimo_0003 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D Thimo_3566 hypothetical protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
D Thimo_1865 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D Thimo_0240 citrate lyase beta subunit K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D Thimo_2334 signal transduction histidine kinase, nitrate/nitrite-specific K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D Thimo_2335 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL
D Thimo_2618 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D Thimo_2426 carbon storage regulator CsrA K03563 csrA; carbon storage regulator
D Thimo_0717 (protein-PII) uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D Thimo_2188 nitrogen regulatory protein PII K04751 glnB; nitrogen regulatory protein P-II 1
D Thimo_2209 nitrogen regulatory protein PII K04751 glnB; nitrogen regulatory protein P-II 1
D Thimo_3680 signal transduction histidine kinase, nitrogen specific K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D Thimo_3679 nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D Thimo_3682 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Thimo_1243 signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D Thimo_1242 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D Thimo_1274 Nif-specific regulatory protein K02584 nifA; Nif-specific regulatory protein
D Thimo_1642 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Thimo_2190 signal transduction histidine kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D Thimo_2191 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K02667 pilR; two-component system, NtrC family, response regulator PilR
D Thimo_2761 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D Thimo_0013 prepilin-type N-terminal cleavage/methylation domain-containing protein K02650 pilA; type IV pilus assembly protein PilA
D Thimo_0693 prepilin-type N-terminal cleavage/methylation domain-containing protein K02650 pilA; type IV pilus assembly protein PilA
D Thimo_3271 hypothetical protein K23549 hupV; uptake hydrogenase large subunit [EC:1.12.99.6]
D Thimo_3343 hydrogenase (NiFe) small subunit HydA K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D Thimo_3235 hydrogenase (NiFe) small subunit HydA K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D Thimo_0774 hydrogenase (NiFe) small subunit HydA K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D Thimo_3340 Ni,Fe-hydrogenase I large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D Thimo_3236 Ni,Fe-hydrogenase I large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D Thimo_0777 Ni,Fe-hydrogenase I large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D Thimo_3237 Ni/Fe-hydrogenase, b-type cytochrome subunit K03620 hyaC; Ni/Fe-hydrogenase 1 B-type cytochrome subunit
D Thimo_2489 methylase of chemotaxis methyl-accepting protein K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D Thimo_1570 PAS domain S-box K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D Thimo_2462 PAS domain S-box K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D Thimo_2816 methylase of chemotaxis methyl-accepting protein K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D Thimo_1571 chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Thimo_2533 tripartite ATP-independent periplasmic transporter solute receptor, DctP family K11688 dctP; C4-dicarboxylate-binding protein DctP
D Thimo_2532 TRAP-type C4-dicarboxylate transport system, small permease component K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D Thimo_2531 TRAP-type C4-dicarboxylate transport system, large permease component K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D Thimo_2323 PAS domain S-box K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
D Thimo_2466 response regulator K14987 fixJ; two-component system, LuxR family, response regulator FixJ
D Thimo_0267 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D Thimo_0268 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K10943 flrC; two-component system, response regulator FlrC
D Thimo_1691 signal transduction histidine kinase K10715 rpfC; two-component system, sensor histidine kinase RpfC [EC:2.7.13.3]
D Thimo_1690 response regulator containing a CheY-like receiver domain and an HD-GYP domain K13815 rpfG; two-component system, response regulator RpfG
D Thimo_1178 cAMP-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Thimo_2171 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Thimo_0956 enoyl-CoA hydratase/carnithine racemase K13816 rpfF; DSF synthase
D Thimo_2997 photosynthetic reaction center M subunit K08929 pufM; photosynthetic reaction center M subunit
D Thimo_2998 photosynthetic reaction center L subunit K08928 pufL; photosynthetic reaction center L subunit
D Thimo_2987 Antenna complex alpha/beta subunit K08926 pufA; light-harvesting complex 1 alpha chain
D Thimo_2989 Antenna complex alpha/beta subunit K08926 pufA; light-harvesting complex 1 alpha chain
D Thimo_2990 Antenna complex alpha/beta subunit K08926 pufA; light-harvesting complex 1 alpha chain
D Thimo_2992 Antenna complex alpha/beta subunit K08926 pufA; light-harvesting complex 1 alpha chain
D Thimo_2994 Antenna complex alpha/beta subunit K08926 pufA; light-harvesting complex 1 alpha chain
D Thimo_2999 Antenna complex alpha/beta subunit K08926 pufA; light-harvesting complex 1 alpha chain
D Thimo_3001 Antenna complex alpha/beta subunit K08926 pufA; light-harvesting complex 1 alpha chain
D Thimo_2988 Antenna complex alpha/beta subunit K08927 pufB; light-harvesting complex 1 beta chain
D Thimo_2991 Antenna complex alpha/beta subunit K08927 pufB; light-harvesting complex 1 beta chain
D Thimo_2993 Antenna complex alpha/beta subunit K08927 pufB; light-harvesting complex 1 beta chain
D Thimo_2995 Antenna complex alpha/beta subunit K08927 pufB; light-harvesting complex 1 beta chain
D Thimo_3000 Antenna complex alpha/beta subunit K08927 pufB; light-harvesting complex 1 beta chain
D Thimo_3002 Antenna complex alpha/beta subunit K08927 pufB; light-harvesting complex 1 beta chain
D Thimo_2774 photosynthetic reaction center, subunit H, bacterial K13991 puhA; photosynthetic reaction center H subunit
D Thimo_3019 photosynthetic reaction center, subunit H, bacterial K13991 puhA; photosynthetic reaction center H subunit
D Thimo_1648 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D Thimo_2286 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D Thimo_1649 cytochrome b subunit of the bc complex K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D Thimo_1650 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D Thimo_2976 cytochrome c2 K08738 CYC; cytochrome c
D Thimo_1937 Cache domain protein K08738 CYC; cytochrome c
D Thimo_1338 cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D Thimo_1339 cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D Thimo_1341 cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D Thimo_0355 cytochrome bd-type quinol oxidase, subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D Thimo_0356 cytochrome d oxidase cyd, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D Thimo_1100 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D Thimo_0980 periplasmic protein involved in polysaccharide export K01991 wza; polysaccharide biosynthesis/export protein
D Thimo_3082 periplasmic protein involved in polysaccharide export K01991 wza; polysaccharide biosynthesis/export protein
D Thimo_0530 protein-tyrosine-phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D Thimo_1019 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D Thimo_0509 HPt domain-containing protein K20976 hptB; histidine phosphotransfer protein HptB
D Thimo_0290 flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D Thimo_1648 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D Thimo_2286 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:tmb02024]
D Thimo_2392 RNA chaperone Hfq K03666 hfq; host factor-I protein
D Thimo_3650 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Thimo_1175 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D Thimo_0120 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D Thimo_3097 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D Thimo_1211 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D Thimo_1405 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D Thimo_0956 enoyl-CoA hydratase/carnithine racemase K13816 rpfF; DSF synthase
D Thimo_1752 PDK repeat-containing protein K20276 bapA; large repetitive protein
D Thimo_0427 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Thimo_2040 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Thimo_1691 signal transduction histidine kinase K10715 rpfC; two-component system, sensor histidine kinase RpfC [EC:2.7.13.3]
D Thimo_1690 response regulator containing a CheY-like receiver domain and an HD-GYP domain K13815 rpfG; two-component system, response regulator RpfG
D Thimo_1178 cAMP-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Thimo_2171 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Thimo_2509 Fe2+/Zn2+ uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D Thimo_0344 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D Thimo_3145 efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D Thimo_1697 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Thimo_2159 putative solute binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Thimo_2158 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Thimo_2070 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Thimo_2157 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Thimo_2071 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Thimo_2985 oligopeptide/dipeptide ABC transporter, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Thimo_2156 oligopeptide/dipeptide ABC transporter, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Thimo_2155 oligopeptide/dipeptide ABC transporter, ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D Thimo_3702 preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Thimo_2873 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D Thimo_0583 protein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D Thimo_2840 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D Thimo_1061 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D Thimo_3665 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Thimo_3622 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Thimo_3673 protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D Thimo_0513 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:tmb02030]
D Thimo_1571 chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Thimo_2489 methylase of chemotaxis methyl-accepting protein K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D Thimo_1570 PAS domain S-box K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D Thimo_2462 PAS domain S-box K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D Thimo_2816 methylase of chemotaxis methyl-accepting protein K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D Thimo_0271 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D Thimo_0277 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D Thimo_0278 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D Thimo_0294 flagellar motor component K02556 motA; chemotaxis protein MotA
D Thimo_0293 flagellar motor protein K02557 motB; chemotaxis protein MotB
D Thimo_1777 flagellar motor protein K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:tmb02040]
D Thimo_0269 flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D Thimo_0270 flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF K02409 fliF; flagellar M-ring protein FliF
D Thimo_0271 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D Thimo_0272 flagellar biosynthesis/type III secretory pathway protein K02411 fliH; flagellar assembly protein FliH
D Thimo_0273 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D Thimo_0274 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D Thimo_0275 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D Thimo_0276 flagellar basal body-associated protein K02415 fliL; flagellar protein FliL
D Thimo_0277 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D Thimo_0278 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D Thimo_0279 flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
D Thimo_0280 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D Thimo_0281 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D Thimo_0282 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D Thimo_0284 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D Thimo_0283 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D Thimo_0291 flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D Thimo_3502 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D Thimo_3501 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D Thimo_3500 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D Thimo_3499 flagellar hook-basal body protein K02390 flgE; flagellar hook protein FlgE
D Thimo_3498 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D Thimo_3497 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D Thimo_3496 flagellar basal body L-ring protein K02393 flgH; flagellar L-ring protein FlgH
D Thimo_3495 flagellar basal-body P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D Thimo_3494 flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D Thimo_3493 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D Thimo_3492 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D Thimo_0263 flagellin/flagellar hook associated protein K02406 fliC; flagellin
D Thimo_0265 flagellar capping protein K02407 fliD; flagellar hook-associated protein 2
D Thimo_0261 flagellar biosynthetic protein FliS K02422 fliS; flagellar secretion chaperone FliS
D Thimo_0262 hypothetical protein K02423 fliT; flagellar protein FliT
D Thimo_0294 flagellar motor component K02556 motA; chemotaxis protein MotA
D Thimo_0293 flagellar motor protein K02557 motB; chemotaxis protein MotB
D Thimo_1777 flagellar motor protein K02557 motB; chemotaxis protein MotB
D Thimo_0290 flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D Thimo_0552 RNA polymerase sigma factor, sigma-70 family K03086 rpoD; RNA polymerase primary sigma factor
D Thimo_0267 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D Thimo_2761 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D Thimo_0268 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K10943 flrC; two-component system, response regulator FlrC
D Thimo_0287 RNA polymerase sigma factor, FliA/WhiG family K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D Thimo_1323 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
D Thimo_0495 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:tmb01501]
D Thimo_2072 beta-glucosidase-like glycosyl hydrolase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D Thimo_2709 beta-lactamase class A K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D Thimo_1932 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Thimo_1980 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Thimo_0849 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Thimo_1869 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Thimo_3480 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Thimo_1229 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Thimo_1931 cation/multidrug efflux pump K18138 acrB; multidrug efflux pump
D Thimo_0850 hydrophobe/amphiphile efflux-1 (HAE1) family transporter K18138 acrB; multidrug efflux pump
D Thimo_1868 cation/multidrug efflux pump K18138 acrB; multidrug efflux pump
D Thimo_1979 hydrophobe/amphiphile efflux-1 (HAE1) family transporter K18138 acrB; multidrug efflux pump
D Thimo_3145 efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D Thimo_3141 signal transduction histidine kinase K18143 adeS; two-component system, OmpR family, sensor histidine kinase AdeS [EC:2.7.13.3]
D Thimo_3142 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K18144 adeR; two-component system, OmpR family, response regulator AdeR
D Thimo_3143 RND family efflux transporter, MFP subunit K18145 adeA; membrane fusion protein, multidrug efflux system
D Thimo_3144 hydrophobe/amphiphile efflux-1 (HAE1) family transporter K18146 adeB; multidrug efflux pump
D Thimo_1100 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D Thimo_1604 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Thimo_2781 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D Thimo_3117 cell division protein FtsI/penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:tmb01502]
D Thimo_1865 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D Thimo_3711 ATP-grasp enzyme, D-alanine-D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Thimo_3108 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Thimo_1514 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Thimo_3115 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D Thimo_3114 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Thimo_3111 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:tmb01503]
D Thimo_3196 signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D Thimo_3197 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K07660 phoP; two-component system, OmpR family, response regulator PhoP
D Thimo_0857 putative membrane-associated, metal-dependent hydrolase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D Thimo_1692 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Thimo_1826 periplasmic serine protease, Do/DeqQ family K04771 degP; serine protease Do [EC:3.4.21.107]
D Thimo_2969 putative dithiol-disulfide isomerase involved in polyketide biosynthesis K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D Thimo_1932 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Thimo_1980 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Thimo_0849 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Thimo_1869 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Thimo_3480 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Thimo_1229 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Thimo_1931 cation/multidrug efflux pump K18138 acrB; multidrug efflux pump
D Thimo_0850 hydrophobe/amphiphile efflux-1 (HAE1) family transporter K18138 acrB; multidrug efflux pump
D Thimo_1868 cation/multidrug efflux pump K18138 acrB; multidrug efflux pump
D Thimo_1979 hydrophobe/amphiphile efflux-1 (HAE1) family transporter K18138 acrB; multidrug efflux pump
D Thimo_1100 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D Thimo_0188 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D Thimo_0731 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D Thimo_3566 hypothetical protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:tmb01000]
C 01001 Protein kinases [BR:tmb01001]
D Thimo_0353 putative unusual protein kinase K08869 ADCK; aarF domain-containing kinase
D Thimo_2305 protein kinase family protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D Thimo_0610 hypothetical protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D Thimo_1538 protein kinase family protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D Thimo_2665 capsular exopolysaccharide biosynthesis protein K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3]
D Thimo_3079 ATPase involved in chromosome partitioning K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3]
D Thimo_3296 phosphate regulon sensor kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Thimo_2145 histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Thimo_3196 signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D Thimo_2063 signal transduction histidine kinase K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D Thimo_3426 histidine kinase,HAMP domain-containing protein,histidine kinase K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D Thimo_3141 signal transduction histidine kinase K18143 adeS; two-component system, OmpR family, sensor histidine kinase AdeS [EC:2.7.13.3]
D Thimo_2334 signal transduction histidine kinase, nitrate/nitrite-specific K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D Thimo_3680 signal transduction histidine kinase, nitrogen specific K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D Thimo_1243 signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D Thimo_2190 signal transduction histidine kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D Thimo_2323 PAS domain S-box K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
D Thimo_1691 signal transduction histidine kinase K10715 rpfC; two-component system, sensor histidine kinase RpfC [EC:2.7.13.3]
D Thimo_0540 signal transduction histidine kinase K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:tmb01009]
D Thimo_2179 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D Thimo_3042 molecular chaperone of HSP90 family K04079 HSP90A; molecular chaperone HtpG
D Thimo_1482 serine/threonine protein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D Thimo_3639 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:tmb01002]
D Thimo_1138 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D Thimo_1048 prepilin signal peptidase PulO-like peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Thimo_3238 hydrogenase expression/formation protein K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D Thimo_2438 hydrogenase maturation protease K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D Thimo_2355 hydrogenase maturation protease K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D Thimo_3568 pyroglutamyl-peptidase I K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3]
D Thimo_3599 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Thimo_3505 putative glutamine amidotransferase K07010 K07010; putative glutamine amidotransferase
D Thimo_2643 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Thimo_0090 glutamate synthase family protein K00284 GLU; glutamate synthase (ferredoxin) [EC:1.4.7.1]
D Thimo_1174 glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Thimo_1801 asparagine synthase, glutamine-hydrolyzing K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D Thimo_3334 asparagine synthase, glutamine-hydrolyzing K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D Thimo_0992 asparagine synthase, glutamine-hydrolyzing K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D Thimo_3589 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D Thimo_1861 intracellular protease, PfpI family K05520 yhbO; deglycase [EC:3.5.1.124]
D Thimo_1208 intracellular protease, PfpI family K05520 yhbO; deglycase [EC:3.5.1.124]
D Thimo_3668 DJ-1 family protein K03152 thiJ; protein deglycase [EC:3.5.1.124]
D Thimo_1687 hypothetical protein K16291 erfK; L,D-transpeptidase ErfK/SrfK
D Thimo_3521 hypothetical protein K21470 ycbB; L,D-transpeptidase YcbB
D Thimo_1943 CAAX amino terminal protease family K07052 K07052; CAAX protease family protein
D Thimo_1660 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D Thimo_1476 hypothetical protein K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D Thimo_1366 Zn-dependent oligopeptidase K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D Thimo_1865 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D Thimo_3623 putative Zn-dependent peptidase K07263 pqqL; zinc protease [EC:3.4.24.-]
D Thimo_3624 putative Zn-dependent peptidase K07263 pqqL; zinc protease [EC:3.4.24.-]
D Thimo_2320 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D Thimo_2017 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D Thimo_0718 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D Thimo_1195 Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D Thimo_2548 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Thimo_3044 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Thimo_3420 Zn-dependent protease with chaperone function K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D Thimo_0110 putative Zn-dependent protease K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]
D Thimo_0726 RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D Thimo_1613 murein endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-]
D Thimo_0442 hypothetical protein K09933 mtfA; MtfA peptidase
D Thimo_1826 periplasmic serine protease, Do/DeqQ family K04771 degP; serine protease Do [EC:3.4.21.107]
D Thimo_0129 periplasmic serine protease, Do/DeqQ family K04772 degQ; serine protease DegQ [EC:3.4.21.-]
D Thimo_2777 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Thimo_1075 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D Thimo_0430 ATP-dependent Clp protease, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D Thimo_0432 ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D Thimo_2889 ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D Thimo_3777 putative ATP-dependent Lon-type protease K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D Thimo_1622 SOS regulatory protein LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D Thimo_1828 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Thimo_1844 proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D Thimo_3669 C-terminal processing peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D Thimo_2182 C-terminal processing peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D Thimo_2245 periplasmic protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D Thimo_0534 ClpP class periplasmic serine protease K04773 sppA; protease IV [EC:3.4.21.-]
D Thimo_0190 ClpP class periplasmic serine protease K04774 sohB; serine protease SohB [EC:3.4.21.-]
D Thimo_3278 ATP-dependent protease HslVU, peptidase subunit K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D Thimo_2580 gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Thimo_1126 collagenase-like protease K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV
D Thimo_1127 collagenase-like protease K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU
D Thimo_2605 putative Zn-dependent protease-like protein K03592 pmbA; PmbA protein
D Thimo_2604 putative Zn-dependent protease-like protein K03568 tldD; TldD protein
D Thimo_3172 large extracellular alpha-helical protein K06894 yfhM; alpha-2-macroglobulin
D Thimo_2389 membrane protease subunit, stomatin/prohibitin K04087 hflC; modulator of FtsH protease HflC
D Thimo_2390 HflK protein K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:tmb01003]
D Thimo_0332 glycosyl transferase K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D Thimo_0017 glycosyltransferase K13668 pimB; phosphatidyl-myo-inositol dimannoside synthase [EC:2.4.1.346]
D Thimo_1516 glycosyltransferase K14335 pimC; alpha-1,6-mannosyltransferase [EC:2.4.1.-]
D Thimo_1939 glycosyltransferase K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
D Thimo_3515 glycogen/starch synthase, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21]
D Thimo_3437 glycogen/starch synthase, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21]
D Thimo_0019 glycosyltransferase K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342]
D Thimo_2907 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D Thimo_3173 penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D Thimo_2101 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D Thimo_1604 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Thimo_2676 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D Thimo_2488 cellobiose phosphorylase K13688 chvB; cyclic beta-1,2-glucan glucanotransferase [EC:2.4.1.397]
D Thimo_3469 glycosyl transferase, UDP-glucuronosyltransferase K05841 E2.4.1.173; sterol 3beta-glucosyltransferase [EC:2.4.1.173]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:tmb01005]
D Thimo_0188 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D Thimo_0731 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D Thimo_0732 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D Thimo_3104 UDP-3-0-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D Thimo_0729 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D Thimo_3636 PAP2 (acid phosphatase) superfamily protein K12978 lpxF; lipid A 4'-phosphatase [EC:3.1.3.-]
D Thimo_0331 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D Thimo_3379 tetraacyldisaccharide 4''-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D Thimo_0411 Lauroyl/myristoyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D Thimo_0111 Lauroyl/myristoyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D Thimo_1946 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D Thimo_0857 putative membrane-associated, metal-dependent hydrolase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D Thimo_1322 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D Thimo_3381 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D Thimo_2757 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D Thimo_2756 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D Thimo_1944 ADP-heptose:LPS heptosyltransferase K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D Thimo_0518 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D Thimo_3686 histidinol-phosphate phosphatase family protein K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D Thimo_0517 D-heptose-7-phosphate 1-kinase,D-heptose-1-phosphate adenylyltransferase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D Thimo_2676 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:tmb01011]
D Thimo_2750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Thimo_3109 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Thimo_3110 UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D Thimo_3113 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D Thimo_3116 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D Thimo_3711 ATP-grasp enzyme, D-alanine-D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Thimo_3108 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Thimo_1514 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Thimo_1623 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D Thimo_3114 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Thimo_3111 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D Thimo_2641 undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Thimo_1457 membrane-associated phospholipid phosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Thimo_1141 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D Thimo_1604 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Thimo_2101 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D Thimo_3173 penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D Thimo_2781 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D Thimo_3117 cell division protein FtsI/penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D Thimo_2777 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Thimo_1075 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D Thimo_2907 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D Thimo_1687 hypothetical protein K16291 erfK; L,D-transpeptidase ErfK/SrfK
D Thimo_3521 hypothetical protein K21470 ycbB; L,D-transpeptidase YcbB
D Thimo_1865 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D Thimo_1613 murein endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-]
D Thimo_2695 soluble lytic murein transglycosylase-like protein K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D Thimo_1043 lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D Thimo_2779 lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D Thimo_0535 transglycosylase family protein,LysM domain-containing protein K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D Thimo_2376 conserved hypothetical protein, YceG family K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D Thimo_2778 rare lipoprotein A K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D Thimo_1108 rare lipoprotein A K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D Thimo_1692 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Thimo_1737 negative regulator of beta-lactamase expression K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:tmb01004]
D Thimo_2381 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Thimo_2382 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Thimo_2378 beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Thimo_2380 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Thimo_1925 beta-hydroxyacyl-(acyl carrier protein) dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D Thimo_0730 beta-hydroxyacyl-(acyl carrier protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D Thimo_0437 enoyl-(acyl-carrier-protein) reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D Thimo_1566 lysophospholipase L1-like esterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D Thimo_1151 lysophospholipase L1-like esterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D Thimo_1598 acyl-CoA hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D Thimo_2469 fatty-acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D Thimo_1052 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Thimo_2681 acyl-CoA synthetase/AMP-acid ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D Thimo_0427 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Thimo_2040 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Thimo_2383 fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D Thimo_0558 acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D Thimo_2908 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Thimo_3687 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:tmb01008]
C 01006 Prenyltransferases [BR:tmb01006]
D Thimo_1784 geranylgeranyl pyrophosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D Thimo_3008 geranylgeranyl pyrophosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D Thimo_1313 geranylgeranyl pyrophosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D Thimo_0723 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D Thimo_3011 phytoene/squalene synthetase K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D Thimo_2284 phytoene/squalene synthetase K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D Thimo_2393 tRNA isopentenyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D Thimo_3314 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D Thimo_1045 4-hydroxybenzoate polyprenyl transferase, proteobacterial K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D Thimo_0921 bacteriochlorophyll/chlorophyll synthetase K04040 chlG; chlorophyll/bacteriochlorophyll a synthase [EC:2.5.1.62 2.5.1.133]
C 01007 Amino acid related enzymes [BR:tmb01007]
D Thimo_2078 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Thimo_2081 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D Thimo_2287 glutamyl-queuosine tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D Thimo_1034 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Thimo_0973 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D Thimo_0329 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Thimo_1740 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Thimo_0959 protein containing C-terminal region/beta chain of methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Thimo_1139 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Thimo_3328 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Thimo_1084 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Thimo_1955 lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Thimo_3047 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Thimo_1890 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Thimo_3684 glycyl-tRNA synthetase, tetrameric type, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D Thimo_3685 glycyl-tRNA synthetase, tetrameric type, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D Thimo_2330 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Thimo_1924 prolyl-tRNA synthetase, family II K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Thimo_2828 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Thimo_2428 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Thimo_2824 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Thimo_2823 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Thimo_1818 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Thimo_1096 aspartate/tyrosine/aromatic aminotransferase K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-]
D Thimo_1207 succinyldiaminopimelate transaminase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
D Thimo_1303 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Thimo_2747 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Thimo_3030 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D Thimo_3283 acetylornithine/succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D Thimo_3714 4-aminobutyrate aminotransferase family protein K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]
D Thimo_3436 adenosylmethionine-8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D Thimo_0069 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D Thimo_1703 branched-chain amino acid aminotransferase, group I K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Thimo_2218 serine-pyruvate aminotransferase/archaeal aspartate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D Thimo_1300 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D Thimo_1864 putative PLP-dependent enzyme possibly involved in cell wall biogenesis K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D Thimo_0028 putative PLP-dependent enzyme possibly involved in cell wall biogenesis K13010 per; perosamine synthetase [EC:2.6.1.102]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:tmb00194]
D Thimo_1172 ATP synthase, F1 epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D Thimo_1171 ATP synthase, F1 beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D Thimo_1170 ATP synthase, F1 gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D Thimo_1169 proton translocating ATP synthase, F1 alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D Thimo_1168 ATP synthase, F1 delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D Thimo_1167 ATP synthase, F0 subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D Thimo_1166 ATP synthase, F0 subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D Thimo_1165 F0F1-type ATP synthase, alpha subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Thimo_1164 F0F1-type ATP synthase, subunit I K02116 atpI; ATP synthase protein I
D Thimo_2998 photosynthetic reaction center L subunit K08928 pufL; photosynthetic reaction center L subunit
D Thimo_2997 photosynthetic reaction center M subunit K08929 pufM; photosynthetic reaction center M subunit
D Thimo_2774 photosynthetic reaction center, subunit H, bacterial K13991 puhA; photosynthetic reaction center H subunit
D Thimo_3019 photosynthetic reaction center, subunit H, bacterial K13991 puhA; photosynthetic reaction center H subunit
D Thimo_2996 Photosynthetic reaction centre cytochrome C subunit K13992 pufC; photosynthetic reaction center cytochrome c subunit
D Thimo_2987 Antenna complex alpha/beta subunit K08926 pufA; light-harvesting complex 1 alpha chain
D Thimo_2989 Antenna complex alpha/beta subunit K08926 pufA; light-harvesting complex 1 alpha chain
D Thimo_2990 Antenna complex alpha/beta subunit K08926 pufA; light-harvesting complex 1 alpha chain
D Thimo_2992 Antenna complex alpha/beta subunit K08926 pufA; light-harvesting complex 1 alpha chain
D Thimo_2994 Antenna complex alpha/beta subunit K08926 pufA; light-harvesting complex 1 alpha chain
D Thimo_2999 Antenna complex alpha/beta subunit K08926 pufA; light-harvesting complex 1 alpha chain
D Thimo_3001 Antenna complex alpha/beta subunit K08926 pufA; light-harvesting complex 1 alpha chain
D Thimo_2988 Antenna complex alpha/beta subunit K08927 pufB; light-harvesting complex 1 beta chain
D Thimo_2991 Antenna complex alpha/beta subunit K08927 pufB; light-harvesting complex 1 beta chain
D Thimo_2993 Antenna complex alpha/beta subunit K08927 pufB; light-harvesting complex 1 beta chain
D Thimo_2995 Antenna complex alpha/beta subunit K08927 pufB; light-harvesting complex 1 beta chain
D Thimo_3000 Antenna complex alpha/beta subunit K08927 pufB; light-harvesting complex 1 beta chain
D Thimo_3002 Antenna complex alpha/beta subunit K08927 pufB; light-harvesting complex 1 beta chain
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:tmb03000]
D Thimo_2813 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain K14063 feaR; AraC family transcriptional regulator, positive regulator of tynA and feaB
D Thimo_1454 transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D Thimo_1135 transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D Thimo_0927 transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D Thimo_1088 transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D Thimo_2944 transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D Thimo_2958 transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D Thimo_0764 transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D Thimo_1853 transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D Thimo_3364 transcriptional regulator K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
D Thimo_0709 transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Thimo_0485 transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D Thimo_3391 putative transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D Thimo_0469 putative transcriptional regulator K21744 tipA; MerR family transcriptional regulator, thiopeptide resistance regulator
D Thimo_2818 putative cobalamin binding protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
D Thimo_2541 Fe2+/Zn2+ uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Thimo_2509 Fe2+/Zn2+ uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D Thimo_1178 cAMP-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Thimo_2171 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Thimo_1319 cAMP-binding protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D Thimo_3329 cAMP-binding protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D Thimo_2610 cAMP-binding protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D Thimo_1731 cAMP-binding protein K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
D Thimo_3369 cAMP-binding protein K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
D Thimo_0423 rrf2 family protein, putative transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D Thimo_0113 rrf2 family protein, putative transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D Thimo_1886 putative transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D Thimo_1812 putative transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D Thimo_0106 birA, biotin-(acetyl-CoA-carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D Thimo_0186 Factor for inversion stimulation Fis, transcriptional activator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D Thimo_0267 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D Thimo_0377 transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains K12146 hyfR; hydrogenase-4 transcriptional activator
D Thimo_1274 Nif-specific regulatory protein K02584 nifA; Nif-specific regulatory protein
D Thimo_0613 molybdenum-pterin binding domain protein K02019 modE; molybdate transport system regulatory protein
D Thimo_3220 putative transcriptional regulator K07726 K07726; putative transcriptional regulator
D Thimo_2814 putative transcriptional regulator with CopG/Arc/MetJ DNA-binding domain and metal-binding domain K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
D Thimo_1908 putative DNA-binding protein with an HTH domain K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D Thimo_1471 stress-induced morphogen K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D Thimo_1163 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Thimo_3738 putative transcriptional regulator K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Thimo_3640 transcriptional activator RfaH K05785 rfaH; transcriptional antiterminator RfaH
D Thimo_2538 heat shock gene repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D Thimo_2966 glycine cleavage system regulatory protein K03567 gcvR; glycine cleavage system transcriptional repressor
D Thimo_2184 glycine cleavage system regulatory protein K03567 gcvR; glycine cleavage system transcriptional repressor
D Thimo_2555 pyrimidine operon attenuation protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D Thimo_0889 putative transcriptional regulator K07733 alpA; prophage regulatory protein
D Thimo_2553 putative transcriptional regulator K07735 algH; putative transcriptional regulator
D Thimo_2513 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D Thimo_0544 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D Thimo_2288 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D Thimo_0343 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D Thimo_3120 mraZ protein K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:tmb03021]
D Thimo_2834 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Thimo_2867 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Thimo_2866 DNA-directed RNA polymerase, beta'' subunit, predominant form K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Thimo_0756 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Thimo_0552 RNA polymerase sigma factor, sigma-70 family K03086 rpoD; RNA polymerase primary sigma factor
D Thimo_1333 RNA polymerase sigma factor RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D Thimo_1822 RNA polymerase sigma factor RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Thimo_3619 alternative sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor
D Thimo_2761 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D Thimo_0287 RNA polymerase sigma factor, FliA/WhiG family K02405 fliA; RNA polymerase sigma factor FliA
D Thimo_0702 transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D Thimo_0210 transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D Thimo_2872 transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
D Thimo_1651 glutathione S-transferase K03599 sspA; stringent starvation protein A
D Thimo_1652 stringent starvation protein B K03600 sspB; stringent starvation protein B
D Thimo_1823 negative regulator of sigma E activity K03597 rseA; sigma-E factor negative regulatory protein RseA
D Thimo_1824 negative regulator of sigma E activity K03598 rseB; sigma-E factor negative regulatory protein RseB
D Thimo_1825 Positive regulator of sigma E activity K03803 rseC; sigma-E factor negative regulatory protein RseC
D Thimo_2513 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D Thimo_0544 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D Thimo_2288 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D Thimo_0296 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D Thimo_2082 transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:tmb03019]
D Thimo_0531 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
D Thimo_2600 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-]
D Thimo_1830 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Thimo_2332 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D Thimo_1805 oligoribonuclease (3'->5' exoribonuclease) K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Thimo_2084 DNA/RNA helicase, superfamily II K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D Thimo_1922 DNA/RNA helicase, superfamily II K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Thimo_2134 DNA/RNA helicase, superfamily II K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D Thimo_0334 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Thimo_3098 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Thimo_1323 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Thimo_0707 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D Thimo_2082 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D Thimo_2536 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Thimo_0175 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Thimo_2392 RNA chaperone Hfq K03666 hfq; host factor-I protein
D Thimo_2915 polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D Thimo_3510 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D Thimo_1462 NTP pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D Thimo_2426 carbon storage regulator CsrA K03563 csrA; carbon storage regulator
D Thimo_2765 putative P-loop-containing kinase K06958 rapZ; RNase adapter protein RapZ
D Thimo_3171 ATP-dependent helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
D Thimo_1605 ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:tmb03011]
D Thimo_1878 ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D Thimo_0719 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D Thimo_2854 ribosomal protein S3, bacterial type K02982 RP-S3; small subunit ribosomal protein S3
D Thimo_2835 ribosomal protein S4, bacterial/organelle type K02986 RP-S4; small subunit ribosomal protein S4
D Thimo_2843 ribosomal protein S5, bacterial/organelle type K02988 RP-S5; small subunit ribosomal protein S5
D Thimo_1509 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D Thimo_2864 ribosomal protein S7, bacterial/organelle K02992 RP-S7; small subunit ribosomal protein S7
D Thimo_2846 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D Thimo_1184 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D Thimo_2861 ribosomal protein S10, bacterial/organelle K02946 RP-S10; small subunit ribosomal protein S10
D Thimo_2836 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D Thimo_2865 ribosomal protein S12, bacterial/organelle K02950 RP-S12; small subunit ribosomal protein S12
D Thimo_2837 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D Thimo_2847 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D Thimo_0706 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D Thimo_2132 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D Thimo_2851 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D Thimo_1510 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D Thimo_2856 ribosomal protein S19, bacterial/organelle K02965 RP-S19; small subunit ribosomal protein S19
D Thimo_2657 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D Thimo_0555 ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D Thimo_2870 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D Thimo_2857 ribosomal protein L2, bacterial/organellar K02886 RP-L2; large subunit ribosomal protein L2
D Thimo_2860 50S ribosomal protein L3, bacterial K02906 RP-L3; large subunit ribosomal protein L3
D Thimo_2859 50S ribosomal protein L4, bacterial/organelle K02926 RP-L4; large subunit ribosomal protein L4
D Thimo_2848 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D Thimo_2845 ribosomal protein L6, bacterial type K02933 RP-L6; large subunit ribosomal protein L6
D Thimo_1512 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D Thimo_2869 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D Thimo_2871 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D Thimo_2868 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D Thimo_1183 ribosomal protein L13, bacterial type K02871 RP-L13; large subunit ribosomal protein L13
D Thimo_2850 ribosomal protein L14, bacterial/organelle K02874 RP-L14; large subunit ribosomal protein L14
D Thimo_2841 ribosomal protein L15, bacterial/organelle K02876 RP-L15; large subunit ribosomal protein L15
D Thimo_2853 ribosomal protein L16, bacterial/organelle K02878 RP-L16; large subunit ribosomal protein L16
D Thimo_2833 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D Thimo_2844 ribosomal protein L18, bacterial type K02881 RP-L18; large subunit ribosomal protein L18
D Thimo_2129 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D Thimo_2825 ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D Thimo_1314 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D Thimo_2855 ribosomal protein L22, bacterial type K02890 RP-L22; large subunit ribosomal protein L22
D Thimo_2858 ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D Thimo_2849 ribosomal protein L24, bacterial/organelle K02895 RP-L24; large subunit ribosomal protein L24
D Thimo_1315 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D Thimo_0712 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D Thimo_2852 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D Thimo_2842 ribosomal protein L30, bacterial/organelle K02907 RP-L30; large subunit ribosomal protein L30
D Thimo_0079 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D Thimo_2384 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D Thimo_0711 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D Thimo_2826 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D Thimo_2839 ribosomal protein L36, bacterial type K02919 RP-L36; large subunit ribosomal protein L36
D Thimo_3136 ribosomal protein L25, Ctc-form K02897 RP-L25; large subunit ribosomal protein L25
D Thimo_1039 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Thimo_3305 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Thimo_1035 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Thimo_3309 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Thimo_1038 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Thimo_3306 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:tmb03009]
D Thimo_1830 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Thimo_1805 oligoribonuclease (3'->5' exoribonuclease) K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Thimo_1831 GTP-binding protein Era K03595 era; GTPase
D Thimo_1316 Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
D Thimo_2513 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D Thimo_0544 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D Thimo_2288 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D Thimo_0702 transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D Thimo_0210 transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D Thimo_2872 transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
D Thimo_2888 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D Thimo_1245 ribosomal RNA small subunit methyltransferase RsmB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Thimo_3272 16S RNA G1207 methylase RsmC K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D Thimo_3625 RNA methyltransferase, RsmD family K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D Thimo_1068 RNA methyltransferase, RsmE family K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D Thimo_2792 tRNA/rRNA cytosine-C5-methylase K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178]
D Thimo_1161 16S rRNA (guanine(527)-N(7))-methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Thimo_3119 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D Thimo_1467 putative S-adenosylmethionine-dependent methyltransferase, YraL family K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D Thimo_2331 rRNA methylase, putative, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D Thimo_2549 23S rRNA methylase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D Thimo_2598 rRNA large subunit m3Psi methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D Thimo_1896 putative SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D Thimo_0713 putative N6-adenine-specific DNA methylase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D Thimo_1893 23S rRNA m2A2503 methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D Thimo_1616 SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D Thimo_2077 pseudouridine synthase family protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D Thimo_0532 pseudouridine synthase, RluA family K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D Thimo_2186 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D Thimo_3032 pseudouridine synthase family protein K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D Thimo_1406 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D Thimo_0228 glutathione synthase/ribosomal protein S6 modification enzyme (glutaminyl transferase) K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
D Thimo_1137 alpha-L-glutamate ligase, RimK family K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
D Thimo_0372 alpha-L-glutamate ligase, RimK family K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
D Thimo_2131 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D Thimo_2461 ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D Thimo_0184 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D Thimo_0424 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D Thimo_0531 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
D Thimo_2600 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-]
D Thimo_2554 RNAse H-fold protein YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D Thimo_2134 DNA/RNA helicase, superfamily II K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D Thimo_0169 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D Thimo_1804 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D Thimo_1887 ribosome-associated GTPase EngA K03977 engA; GTPase
D Thimo_2391 GTP-binding protein HflX K03665 hflX; GTPase
D Thimo_1257 putative translation factor (SUA5) K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Thimo_0757 (p)ppGpp synthetase, RelA/SpoT family K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D Thimo_0914 hypothetical protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D Thimo_0704 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D Thimo_0701 hypothetical protein K09748 rimP; ribosome maturation factor RimP
D Thimo_1079 iojap-like ribosome-associated protein K09710 ybeB; ribosome-associated protein
D Thimo_0668 metalloprotein, YbeY/UPF0054 family K07042 ybeY; probable rRNA maturation factor
D Thimo_1506 putative RNA-binding protein containing KH domain, possibly ribosomal protein K07574 yhbY; RNA-binding protein
D Thimo_0463 hypothetical protein K09889 yjgA; ribosome-associated protein
D Thimo_2762 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
D Thimo_1609 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
D Thimo_2385 putative metal-binding protein, possibly nucleic-acid binding protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:tmb03016]
D Thimo_3041 ribonuclease I K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
D Thimo_3398 tRNA nucleotidyltransferase/poly(A) polymerase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D Thimo_2078 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Thimo_1924 prolyl-tRNA synthetase, family II K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Thimo_1139 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Thimo_1084 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Thimo_0959 protein containing C-terminal region/beta chain of methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Thimo_2081 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D Thimo_1740 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Thimo_1955 lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Thimo_3047 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Thimo_2428 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Thimo_2828 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Thimo_2330 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Thimo_0329 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Thimo_3328 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Thimo_1890 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Thimo_2824 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Thimo_2823 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Thimo_1034 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Thimo_0973 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D Thimo_1845 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D Thimo_2002 HIT family hydrolase, diadenosine tetraphosphate hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D Thimo_2043 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D Thimo_2437 putative methyltransferase, YaeB/AF_0241 family K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D Thimo_2651 pseudouridylate synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D Thimo_0705 tRNA pseudouridine 55 synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D Thimo_1327 hypothetical protein K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D Thimo_2710 cysteine desulfurase DndA K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Thimo_1257 putative translation factor (SUA5) K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Thimo_2393 tRNA isopentenyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D Thimo_3701 tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D Thimo_1160 glucose-inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D Thimo_0002 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D Thimo_3121 Bacterial RNase P class A K01978 rnpB; M1 RNA
D Thimo_3332 ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D Thimo_0752 ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D Thimo_1953 exoribonuclease R K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D Thimo_2431 2''-5'' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D Thimo_2007 ATP-binding cassette protein, ChvD family K06020 ettA; energy-dependent translational throttle protein EttA
D Thimo_3684 glycyl-tRNA synthetase, tetrameric type, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D Thimo_3685 glycyl-tRNA synthetase, tetrameric type, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D Thimo_2287 glutamyl-queuosine tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D Thimo_1225 hypothetical protein K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-]
D Thimo_3463 cytosine/adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D Thimo_2204 tRNA dihydrouridine synthase A K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D Thimo_0185 putative TIM-barrel protein, nifR3 family K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D Thimo_0670 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D Thimo_3443 MiaB-like tRNA modifying enzyme K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
D Thimo_2130 tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D Thimo_1065 RNA methyltransferase, TrmH family, group 1 K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D Thimo_3675 putative rRNA methylase SpoU family K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D Thimo_2095 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D Thimo_1227 putative ATPase of the PP-loop superfamily implicated in cell cycle control K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D Thimo_2638 putative redox protein, regulator of disulfide bond formation K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D Thimo_0147 sulfur relay protein TusB/DsrH K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D Thimo_0146 sulfur relay protein TusC/DsrF K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D Thimo_0145 sulfur relay protein TusD/DsrE K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D Thimo_1395 sulfur relay protein, TusE/DsrC/DsvC family K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D Thimo_3365 sulfur relay protein, TusE/DsrC/DsvC family K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D Thimo_0417 sulfur relay protein, TusE/DsrC/DsvC family K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D Thimo_3301 Iron-sulfur cluster assembly accessory protein K13628 iscA; iron-sulfur cluster assembly protein
D Thimo_0156 hypothetical protein K13628 iscA; iron-sulfur cluster assembly protein
D Thimo_1954 folate-binding protein YgfZ K06980 ygfZ; tRNA-modifying protein YgfZ
D Thimo_1057 S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D Thimo_2971 queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D Thimo_2970 6-pyruvoyl-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D Thimo_0577 organic radical activating enzyme K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D Thimo_3604 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D Thimo_1806 iron-sulfur cluster binding protein, putative K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D Thimo_1060 tRNA-guanine transglycosylase, queuosine-34-forming K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D Thimo_0935 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D Thimo_2326 putative P-loop ATPase fused to an acetyltransferase K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
D Thimo_2098 universal bacterial protein YeaZ K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D Thimo_0557 putative glycoprotease GCP K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D Thimo_1693 ATPase, YjeE family K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D Thimo_1958 dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D Thimo_2332 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D Thimo_0707 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:tmb03012]
D Thimo_0703 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D Thimo_2827 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D Thimo_0102 ATPase component of ABC transporters with duplicated ATPase domain K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D Thimo_0720 translation elongation factor Ts K02357 tsf; elongation factor Ts
D Thimo_2862 translation elongation factor TU K02358 tuf; elongation factor Tu
D Thimo_2875 translation elongation factor TU K02358 tuf; elongation factor Tu
D Thimo_2796 small GTP-binding protein domain protein K02355 fusA; elongation factor G
D Thimo_2863 translation elongation factor EF-G K02355 fusA; elongation factor G
D Thimo_1686 small GTP-binding protein domain protein K02355 fusA; elongation factor G
D Thimo_3130 peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D Thimo_0722 ribosome recycling factor K02838 frr; ribosome recycling factor
D Thimo_3129 protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D Thimo_3137 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D Thimo_2091 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D Thimo_2222 translation elongation factor P K02356 efp; elongation factor P
D Thimo_2221 lysyl-tRNA synthetase-like protein GenX K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-]
D Thimo_1956 peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D Thimo_2579 peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
D Thimo_2348 protein chain release factor B K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:tmb03110]
D Thimo_2092 ATP-dependent Clp protease ATP-binding subunit clpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D Thimo_2255 ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D Thimo_0431 endopeptidase Clp ATP-binding regulatory subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D Thimo_3279 ATP-dependent protease HslVU, ATPase subunit K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D Thimo_3042 molecular chaperone of HSP90 family K04079 HSP90A; molecular chaperone HtpG
D Thimo_2536 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Thimo_0175 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Thimo_2535 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D Thimo_1941 DnaJ-class molecular chaperone with C-terminal Zn finger domain K05516 cbpA; curved DNA-binding protein
D Thimo_0947 disulfide bond chaperone K04083 hslO; molecular chaperone Hsp33
D Thimo_2537 molecular chaperone GrpE (heat shock protein) K03687 GRPE; molecular chaperone GrpE
D Thimo_3615 molecular chaperone (small heat shock protein) K13993 HSP20; HSP20 family protein
D Thimo_3617 molecular chaperone (small heat shock protein) K13993 HSP20; HSP20 family protein
D Thimo_1744 molecular chaperone (small heat shock protein) K13993 HSP20; HSP20 family protein
D Thimo_3616 molecular chaperone (small heat shock protein) K13993 HSP20; HSP20 family protein
D Thimo_0128 molecular chaperone (small heat shock protein) K04080 ibpA; molecular chaperone IbpA
D Thimo_1658 ribosome-associated heat shock protein implicated in recycling of 50S subunit K04762 hslR; ribosome-associated heat shock protein Hsp15
D Thimo_0176 Co-chaperonin GroES K04078 groES; chaperonin GroES
D Thimo_1826 periplasmic serine protease, Do/DeqQ family K04771 degP; serine protease Do [EC:3.4.21.107]
D Thimo_2548 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Thimo_3044 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Thimo_1165 F0F1-type ATP synthase, alpha subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Thimo_3673 protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D Thimo_1881 hypothetical protein K09796 pccA; periplasmic copper chaperone A
D Thimo_2564 hydrogenase nickel insertion protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D Thimo_2565 hydrogenase accessory protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D Thimo_0330 peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D Thimo_0436 parvulin-like peptidyl-prolyl isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D Thimo_1217 FKBP-type peptidyl-prolyl cis-trans isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D Thimo_3230 nitrogen fixation protein NifM K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D Thimo_0967 parvulin-like peptidyl-prolyl isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D Thimo_3266 parvulin-like peptidyl-prolyl isomerase K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D Thimo_0132 thioredoxin domain-containing protein K03671 TXN; thioredoxin
D Thimo_2083 thioredoxin K03671 TXN; thioredoxin
D Thimo_0845 thioredoxin K03671 TXN; thioredoxin
D Thimo_2344 thioredoxin K03672 trxC; thioredoxin 2 [EC:1.8.1.8]
D Thimo_2345 thioredoxin K05838 ybbN; putative thioredoxin
D Thimo_1659 Glutaredoxin, GrxC family K03676 grxC; glutaredoxin 3
D Thimo_3333 monothiol glutaredoxin, Grx4 family K07390 grxD; monothiol glutaredoxin
D Thimo_2969 putative dithiol-disulfide isomerase involved in polyketide biosynthesis K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D Thimo_1973 disulfide bond formation protein DsbB K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D Thimo_1481 protein-disulfide isomerase K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D Thimo_0179 thiol:disulfide interchange protein K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
D Thimo_1352 periplasmic protein thiol:disulfide oxidoreductase, DsbE subfamily K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
C 04131 Membrane trafficking [BR:tmb04131]
D Thimo_1519 phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase K01115 PLD1_2; phospholipase D1/2 [EC:3.1.4.4]
D Thimo_1894 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Thimo_2175 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Thimo_1389 phosphoglycerate mutase, BPG-dependent, family 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Thimo_2891 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Thimo_2173 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Thimo_3042 molecular chaperone of HSP90 family K04079 HSP90A; molecular chaperone HtpG
D Thimo_1638 major facilitator superfamily permease K06902 UMF1; MFS transporter, UMF1 family
C 04121 Ubiquitin system [BR:tmb04121]
C 03051 Proteasome [BR:tmb03051]
D Thimo_3042 molecular chaperone of HSP90 family K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:tmb03032]
D Thimo_2369 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D Thimo_0433 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D Thimo_2822 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D Thimo_1879 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D Thimo_0003 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D Thimo_1513 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D Thimo_0892 DNA replication protein K02315 dnaC; DNA replication protein DnaC
D Thimo_0553 DNA primase, catalytic core K02316 dnaG; DNA primase [EC:2.7.7.101]
D Thimo_2974 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Thimo_2289 DNA-directed DNA polymerase III PolC K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Thimo_0004 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Thimo_2319 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D Thimo_1082 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Thimo_2374 DNA polymerase III, delta'' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Thimo_3662 DNA polymerase III epsilon subunit-like 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Thimo_1318 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Thimo_1292 DNA polymerase III epsilon subunit-like 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Thimo_3768 DNA polymerase III epsilon subunit-like 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Thimo_0733 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D Thimo_2592 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Thimo_0917 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Thimo_1635 DnaA regulatory inactivator Hda K10763 hda; DnaA-homolog protein
D Thimo_1299 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D Thimo_0674 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D Thimo_0452 DNA topoisomerase IV, A subunit, proteobacterial K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D Thimo_1786 DNA topoisomerase IV, B subunit, proteobacterial K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D Thimo_1256 DNA topoisomerase I, bacterial K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:tmb03036]
D Thimo_1830 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Thimo_3720 putative RNA methylase K26273 SBNO; protein strawberry notch
D Thimo_0104 H-NS histone family K03746 hns; DNA-binding protein H-NS
D Thimo_0433 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D Thimo_2822 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D Thimo_1879 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D Thimo_1941 DnaJ-class molecular chaperone with C-terminal Zn finger domain K05516 cbpA; curved DNA-binding protein
D Thimo_1940 hypothetical protein K18997 cbpM; chaperone modulatory protein CbpM
D Thimo_0003 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D Thimo_0121 DNA-binding ferritin-like protein (oxidative damage protectant) K04047 dps; starvation-inducible DNA-binding protein
D Thimo_0186 Factor for inversion stimulation Fis, transcriptional activator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D Thimo_2392 RNA chaperone Hfq K03666 hfq; host factor-I protein
D Thimo_0709 transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Thimo_2687 uncharacterized protein involved in chromosome partitioning K03632 mukB; chromosome partition protein MukB
D Thimo_2688 uncharacterized protein involved in chromosome partitioning K03804 mukE; chromosome partition protein MukE
D Thimo_2689 uncharacterized protein involved in chromosome partitioning K03633 mukF; chromosome partition protein MukF
D Thimo_0915 chromosome segregation protein SMC K03529 smc; chromosome segregation protein
D Thimo_0974 hypothetical protein K05896 scpA; segregation and condensation protein A
D Thimo_0975 segregation and condensation protein B K06024 scpB; segregation and condensation protein B
D Thimo_3106 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D Thimo_1324 septum formation initiator K05589 ftsB; cell division protein FtsB
D Thimo_3621 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D Thimo_3117 cell division protein FtsI/penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D Thimo_2446 DNA segregation ATPase, FtsK/SpoIIIE family K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D Thimo_3118 cell division protein FtsL K03586 ftsL; cell division protein FtsL
D Thimo_3107 cell division septal protein K03589 ftsQ; cell division protein FtsQ
D Thimo_3112 cell division protein FtsW K03588 ftsW; cell division protein FtsW
D Thimo_3620 cell division protein K09811 ftsX; cell division transport system permease protein
D Thimo_3105 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Thimo_0916 cell division protein K03528 zipA; cell division protein ZipA
D Thimo_1192 hypothetical protein K09888 zapA; cell division protein ZapA
D Thimo_1193 TIGR02449 family protein K09892 zapB; cell division protein ZapB
D Thimo_3606 hypothetical protein K18778 zapD; cell division protein ZapD
D Thimo_0602 putative ATPase K06916 zapE; cell division protein ZapE
D Thimo_1692 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Thimo_1932 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Thimo_1980 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Thimo_0849 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Thimo_1869 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Thimo_3480 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Thimo_1229 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Thimo_2001 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D Thimo_2000 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D Thimo_1999 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D Thimo_2784 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D Thimo_2783 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D Thimo_2782 rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D Thimo_2780 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D Thimo_1162 ATPase involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D Thimo_3739 ATPase involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D Thimo_3767 ATPase involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D Thimo_2227 ATPase involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D Thimo_1163 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Thimo_3738 putative transcriptional regulator K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Thimo_0452 DNA topoisomerase IV, A subunit, proteobacterial K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D Thimo_1786 DNA topoisomerase IV, B subunit, proteobacterial K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D Thimo_1160 glucose-inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D Thimo_1161 16S rRNA (guanine(527)-N(7))-methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Thimo_3276 tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC
D Thimo_1479 tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D Thimo_3766 site-specific recombinase XerD K04763 xerD; integrase/recombinase XerD
D Thimo_0958 ATPase involved in chromosome partitioning K03593 mrp; ATP-binding protein involved in chromosome partitioning
D Thimo_1203 ribosome biogenesis GTP-binding protein YsxC/EngB K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:tmb03400]
D Thimo_1478 O-6-methylguanine DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D Thimo_2436 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D Thimo_1862 uracil DNA glycosylase superfamily protein K10800 SMUG1; single-strand selective monofunctional uracil DNA glycosylase [EC:3.2.2.-]
D Thimo_2037 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D Thimo_1808 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D Thimo_3667 mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Thimo_2233 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Thimo_0740 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Thimo_3362 uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D Thimo_3629 formamidopyrimidine-DNA glycosylase Fpg K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D Thimo_1591 formamidopyrimidine-DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D Thimo_3442 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D Thimo_0455 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Thimo_0917 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Thimo_2592 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Thimo_2142 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D Thimo_2584 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D Thimo_1819 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D Thimo_2617 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
D Thimo_0076 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Thimo_2867 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Thimo_2866 DNA-directed RNA polymerase, beta'' subunit, predominant form K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Thimo_2834 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Thimo_0756 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Thimo_2365 transcription-repair coupling factor Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D Thimo_2109 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Thimo_2394 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Thimo_2128 exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D Thimo_0612 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D Thimo_1785 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D Thimo_2289 DNA-directed DNA polymerase III PolC K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Thimo_0004 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Thimo_2319 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D Thimo_1082 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Thimo_2374 DNA polymerase III, delta'' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Thimo_3662 DNA polymerase III epsilon subunit-like 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Thimo_1318 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Thimo_1292 DNA polymerase III epsilon subunit-like 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Thimo_3768 DNA polymerase III epsilon subunit-like 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Thimo_2974 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Thimo_2316 exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D Thimo_2317 exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D Thimo_2315 exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D Thimo_2430 protein RecA K03553 recA; recombination protein RecA
D Thimo_1621 RecA/RadA recombinase K03553 recA; recombination protein RecA
D Thimo_3611 Holliday junction DNA helicase, RuvA subunit K03550 ruvA; holliday junction DNA helicase RuvA
D Thimo_2736 Holliday junction DNA helicase, RuvB subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D Thimo_3610 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D Thimo_2397 primosomal protein N'' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D Thimo_1515 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D Thimo_1044 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D Thimo_1832 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D Thimo_2003 recombination protein RecR K06187 recR; recombination protein RecR
D Thimo_2540 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D Thimo_3102 DNA recombination-dependent growth factor C K03554 rdgC; recombination associated protein RdgC
D Thimo_1276 CRISPR-associated endonuclease Cas1/CRISPR-associated protein Cas4 K15342 cas1; CRISP-associated protein Cas1
D Thimo_0326 CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1
D Thimo_0675 putative ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D Thimo_1299 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D Thimo_0674 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D Thimo_1256 DNA topoisomerase I, bacterial K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D Thimo_0433 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D Thimo_0186 Factor for inversion stimulation Fis, transcriptional activator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D Thimo_2822 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D Thimo_1879 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D Thimo_0334 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Thimo_3098 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Thimo_0104 H-NS histone family K03746 hns; DNA-binding protein H-NS
D Thimo_2363 nucleotidyltransferase/DNA polymerase involved in DNA repair K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D Thimo_1622 SOS regulatory protein LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D Thimo_1620 nucleotidyltransferase/DNA polymerase involved in DNA repair K14161 imuB; protein ImuB
D Thimo_1619 DNA-directed DNA polymerase III PolC K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D Thimo_2429 hypothetical protein K03565 recX; regulatory protein
D Thimo_1388 DNA polymerase IV (family X) K02347 polX; DNA polymerase (family X)
D Thimo_3151 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D Thimo_2099 DNA helicase, Rad3 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D Thimo_1592 Lhr-like helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D Thimo_2162 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Thimo_1213 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Thimo_1698 ribonucleotide reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:tmb03029]
D Thimo_1649 cytochrome b subunit of the bc complex K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D Thimo_0703 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D Thimo_2827 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D Thimo_0720 translation elongation factor Ts K02357 tsf; elongation factor Ts
D Thimo_2862 translation elongation factor TU K02358 tuf; elongation factor Tu
D Thimo_2875 translation elongation factor TU K02358 tuf; elongation factor Tu
D Thimo_2796 small GTP-binding protein domain protein K02355 fusA; elongation factor G
D Thimo_2863 translation elongation factor EF-G K02355 fusA; elongation factor G
D Thimo_1686 small GTP-binding protein domain protein K02355 fusA; elongation factor G
D Thimo_1831 GTP-binding protein Era K03595 era; GTPase
D Thimo_1034 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Thimo_1084 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Thimo_3047 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Thimo_1740 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Thimo_2786 glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Thimo_2787 glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D Thimo_2785 glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D Thimo_2974 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Thimo_0727 outer membrane protein assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family
D Thimo_2536 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Thimo_2537 molecular chaperone GrpE (heat shock protein) K03687 GRPE; molecular chaperone GrpE
D Thimo_0175 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Thimo_0176 Co-chaperonin GroES K04078 groES; chaperonin GroES
D Thimo_2535 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D Thimo_2710 cysteine desulfurase DndA K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Thimo_3333 monothiol glutaredoxin, Grx4 family K07390 grxD; monothiol glutaredoxin
D Thimo_0958 ATPase involved in chromosome partitioning K03593 mrp; ATP-binding protein involved in chromosome partitioning
D Thimo_3702 preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Thimo_0443 uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems K07152 SCO1; protein SCO1
D Thimo_3042 molecular chaperone of HSP90 family K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:tmb02000]
D Thimo_3378 lipid A export permease/ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D Thimo_2962 fused permease/ATPase component of ABC transporter involved in Fe-S cluster assembly K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D Thimo_2820 ABC transporter, permease/ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D Thimo_0359 cysteine export CydDC family ABC transporter permease subunit/ATP-binding protein CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D Thimo_0358 cysteine export CydDC family ABC transporter permease subunit/ATP-binding protein CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D Thimo_3573 ABC-type multidrug transport system, ATPase and permease component K06148 ABCC-BAC; ATP-binding cassette, subfamily C, bacterial
D Thimo_2582 ATPase component of ABC transporters with duplicated ATPase domain K15738 uup; ABC transport system ATP-binding/permease protein
D Thimo_1537 ABC-type multidrug transport system, ATPase component K21397 K21397; ABC transport system ATP-binding/permease protein
D Thimo_0614 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D Thimo_3182 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D Thimo_0615 molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D Thimo_3181 ABC-type molybdate transport system, permease component K02018 modB; molybdate transport system permease protein
D Thimo_0616 molybdenum ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D Thimo_3180 ABC-type spermidine/putrescine transport system, ATPase component K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D Thimo_1760 ABC-type Fe3+ transport system, periplasmic component K02012 afuA; iron(III) transport system substrate-binding protein
D Thimo_1761 ABC-type Fe3+ transport system, permease component K02011 afuB; iron(III) transport system permease protein
D Thimo_1762 ABC-type spermidine/putrescine transport system, ATPase component K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D Thimo_0945 spermidine/putrescine-binding periplasmic protein K11073 potF; putrescine transport system substrate-binding protein
D Thimo_0942 ABC-type spermidine/putrescine transport system, permease component II K11074 potI; putrescine transport system permease protein
D Thimo_0943 ABC-type spermidine/putrescine transport system, permease component I K11075 potH; putrescine transport system permease protein
D Thimo_0944 spermidine/putrescine ABC transporter ATP-binding subunit K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D Thimo_3659 ABC-type proline/glycine betaine transport system, periplasmic component K02002 proX; glycine betaine/proline transport system substrate-binding protein
D Thimo_3658 ABC-type proline/glycine betaine transport system, permease component K02001 proW; glycine betaine/proline transport system permease protein
D Thimo_3657 glycine betaine/L-proline transport ATP binding subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D Thimo_0224 ABC transporter, substrate-binding protein, aliphatic sulfonates family K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D Thimo_0225 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D Thimo_0226 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D Thimo_3430 ATPase component of ABC-type sugar transporter K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Thimo_3433 ABC-type sugar transport system, periplasmic component K10236 thuE; trehalose/maltose transport system substrate-binding protein
D Thimo_3432 permease component of ABC-type sugar transporter K10237 thuF; trehalose/maltose transport system permease protein
D Thimo_3431 ABC-type sugar transport system, permease component K10238 thuG; trehalose/maltose transport system permease protein
D Thimo_2045 TIGR00245 family protein K02069 STAR2; UDP-glucose/iron transport system permease protein
D Thimo_2044 ABC-type uncharacterized transport system, ATPase component K02068 STAR1; UDP-glucose/iron transport system ATP-binding protein
D Thimo_2753 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D Thimo_1568 mce related protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D Thimo_2754 conserved hypothetical integral membrane protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D Thimo_1107 conserved hypothetical integral membrane protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D Thimo_2755 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D Thimo_1106 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D Thimo_0131 ABC-type transport system involved in resistance to organic solvents, auxiliary component K07323 mlaC; phospholipid transport system substrate-binding protein
D Thimo_2752 ABC-type transport system involved in resistance to organic solvents, auxiliary component K07323 mlaC; phospholipid transport system substrate-binding protein
D Thimo_2751 putative NTP binding protein (contains STAS domain) K07122 mlaB; phospholipid transport system transporter-binding protein
D Thimo_2529 ABC-type phosphate transport system, periplasmic component K02040 pstS; phosphate transport system substrate-binding protein
D Thimo_1152 phosphate ABC transporter, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D Thimo_1156 phosphate ABC transporter, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D Thimo_2528 phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein
D Thimo_1153 phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein
D Thimo_2527 phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein
D Thimo_1154 phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein
D Thimo_2526 phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Thimo_1155 phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Thimo_1544 periplasmic component of amino acid ABC-type transporter/signal transduction system K09969 aapJ; general L-amino acid transport system substrate-binding protein
D Thimo_1543 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family K09970 aapQ; general L-amino acid transport system permease protein
D Thimo_1542 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family K09971 aapM; general L-amino acid transport system permease protein
D Thimo_1536 ABC-type polar amino acid transport system, ATPase component K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1]
D Thimo_0381 periplasmic component of amino acid ABC-type transporter/signal transduction system K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Thimo_1697 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Thimo_2159 putative solute binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Thimo_2158 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Thimo_2070 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Thimo_2157 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Thimo_2071 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Thimo_2985 oligopeptide/dipeptide ABC transporter, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Thimo_2156 oligopeptide/dipeptide ABC transporter, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Thimo_2155 oligopeptide/dipeptide ABC transporter, ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D Thimo_3183 ABC-type Fe3+-hydroxamate transport system, periplasmic component K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D Thimo_2804 ABC-type Fe3+-hydroxamate transport system, periplasmic component K25034 btuF; cobalamin transport system substrate-binding protein
D Thimo_2805 ABC-type Fe3+-siderophore transport system, permease component K25027 btuC; cobalamin transport system permease protein
D Thimo_2807 ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D Thimo_2512 ABC-type metal ion transport system, periplasmic component/surface adhesin K09815 znuA; zinc transport system substrate-binding protein
D Thimo_0042 ABC-type metal ion transport system, periplasmic component/surface adhesin K09815 znuA; zinc transport system substrate-binding protein
D Thimo_2510 ABC-type Mn2+/Zn2+ transport system, permease component K09816 znuB; zinc transport system permease protein
D Thimo_0040 ABC-type Mn2+/Zn2+ transport system, permease component K09816 znuB; zinc transport system permease protein
D Thimo_2511 ATPase component of Mn/Zn ABC-type transporter K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D Thimo_0041 ATPase component of Mn/Zn ABC-type transporter K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D Thimo_1255 ABC-type metal ion transport system, periplasmic component/surface adhesin K11707 troA; manganese/zinc/iron transport system substrate-binding protein
D Thimo_1253 ABC-type Mn2+/Zn2+ transport system, permease component K11708 troC; manganese/zinc/iron transport system permease protein
D Thimo_1252 ABC-type Mn2+/Zn2+ transport system, permease component K11709 troD; manganese/zinc/iron transport system permease protein
D Thimo_1254 ATPase component of Mn/Zn ABC-type transporter K11710 troB; manganese/zinc/iron transport system ATP- binding protein [EC:7.2.2.5]
D Thimo_0929 cobalt ABC transporter, permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D Thimo_0931 ABC-type Co2+ transport system, permease component K02007 cbiM; cobalt/nickel transport system permease protein
D Thimo_0928 ABC-type cobalt transport system, ATPase component K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D Thimo_0932 ABC-type Co2+ transport system, periplasmic component K10094 cbiK; nickel transport protein
D Thimo_0930 hypothetical protein K16915 cbiL; nickel transport protein
D Thimo_0504 putative permease K07091 lptF; lipopolysaccharide export system permease protein
D Thimo_2321 putative permease K11720 lptG; lipopolysaccharide export system permease protein
D Thimo_2760 ABC-type (unclassified) transport system, ATPase component K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D Thimo_3158 ABC-type transport system involved in multi-copper enzyme maturation, permease component K25151 gldF; gliding motility-associated transport system permease protein
D Thimo_3157 ABC-type multidrug transport system, ATPase component K25152 gldA; gliding motility-associated transport system ATP-binding protein
D Thimo_1675 ABC-type multidrug transport system, permease component K25180 ybhR; drug efflux transport system permease protein
D Thimo_1674 ABC-type multidrug transport system, permease component K25181 ybhS; drug efflux transport system permease protein
D Thimo_1673 ABC-type multidrug transport system, ATPase component K25182 ybhF; drug efflux transport system ATP-binding protein
D Thimo_1672 multidrug resistance efflux pump K25183 ybhG; membrane fusion protein YbhG
D Thimo_0194 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein
D Thimo_0193 lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D Thimo_1355 heme exporter protein CcmD K02196 ccmD; heme exporter protein D
D Thimo_1356 ABC-type transport system involved in cytochrome c biogenesis, permease component K02195 ccmC; heme exporter protein C
D Thimo_1357 heme exporter protein CcmB K02194 ccmB; heme exporter protein B
D Thimo_1358 heme ABC exporter, ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D Thimo_3620 cell division protein K09811 ftsX; cell division transport system permease protein
D Thimo_3621 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D Thimo_2102 putative membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Thimo_3126 ABC-type multidrug transport system, permease component K01992 ABC-2.P; ABC-2 type transport system permease protein
D Thimo_2103 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Thimo_3125 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Thimo_2506 ABC-type transport system, involved in lipoprotein release, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D Thimo_1430 ABC-type antimicrobial peptide transport system, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D Thimo_1431 ABC-type antimicrobial peptide transport system, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D Thimo_0634 ABC-type transport system, involved in lipoprotein release, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D Thimo_0635 ABC-type transport system, involved in lipoprotein release, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D Thimo_1564 putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D Thimo_0300 ABC-type transport system, involved in lipoprotein release, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D Thimo_2507 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Thimo_2521 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Thimo_1432 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Thimo_0636 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Thimo_1565 putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Thimo_0301 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Thimo_2215 FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D Thimo_1102 nitrate/nitrite transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D Thimo_3020 arabinose efflux permease family protein K08226 pucC; MFS transporter, BCD family, chlorophyll transporter
D Thimo_1638 major facilitator superfamily permease K06902 UMF1; MFS transporter, UMF1 family
D Thimo_2768 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D Thimo_1463 phosphoenolpyruvate-protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D Thimo_2767 phosphotransferase system HPr (HPr) family protein K02784 ptsH; phosphocarrier protein HPr
D Thimo_2766 phosphotransferase system, mannose/fructose-specific component IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D Thimo_2763 phosphotransferase system mannitol/fructose-specifc IIA component (Ntr-type) K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D Thimo_1841 K+ transport system, NAD-binding component K10716 kch; voltage-gated potassium channel
D Thimo_1930 ammonium transporter K03320 amt; ammonium transporter, Amt family
D Thimo_0097 ammonium transporter K03320 amt; ammonium transporter, Amt family
D Thimo_1651 glutathione S-transferase K03599 sspA; stringent starvation protein A
D Thimo_1113 tetratricopeptide repeat protein K07114 yfbK; Ca-activated chloride channel homolog
D Thimo_1114 von Willebrand factor type A-like protein K07114 yfbK; Ca-activated chloride channel homolog
D Thimo_1115 Mg-chelatase subunit ChlD K07114 yfbK; Ca-activated chloride channel homolog
D Thimo_2930 tetratricopeptide repeat protein K07114 yfbK; Ca-activated chloride channel homolog
D Thimo_2931 Mg-chelatase subunit ChlD K07114 yfbK; Ca-activated chloride channel homolog
D Thimo_2328 FtsH-interacting integral membrane protein K19416 yccA; modulator of FtsH protease
D Thimo_0708 small-conductance mechanosensitive channel K05802 mscK; potassium-dependent mechanosensitive channel
D Thimo_2467 small-conductance mechanosensitive channel K03442 mscS; small conductance mechanosensitive channel
D Thimo_2583 small-conductance mechanosensitive channel K16052 ynaI; MscS family membrane protein
D Thimo_2530 Mg2+ transporter MgtE K06213 mgtE; magnesium transporter
D Thimo_2133 Mg2+ transporter MgtE K06213 mgtE; magnesium transporter
D Thimo_0294 flagellar motor component K02556 motA; chemotaxis protein MotA
D Thimo_0293 flagellar motor protein K02557 motB; chemotaxis protein MotB
D Thimo_1777 flagellar motor protein K02557 motB; chemotaxis protein MotB
D Thimo_2499 biopolymer transport protein K03561 exbB; biopolymer transport protein ExbB
D Thimo_3376 biopolymer transport protein K03561 exbB; biopolymer transport protein ExbB
D Thimo_2800 biopolymer transport protein K03561 exbB; biopolymer transport protein ExbB
D Thimo_3187 biopolymer transport protein K03561 exbB; biopolymer transport protein ExbB
D Thimo_3186 biopolymer transport protein K03559 exbD; biopolymer transport protein ExbD
D Thimo_2497 biopolymer transport protein K03559 exbD; biopolymer transport protein ExbD
D Thimo_2498 biopolymer transport protein K03559 exbD; biopolymer transport protein ExbD
D Thimo_3377 biopolymer transport protein K03559 exbD; biopolymer transport protein ExbD
D Thimo_2801 biopolymer transport protein K03559 exbD; biopolymer transport protein ExbD
D Thimo_0571 TolQ protein K03562 tolQ; biopolymer transport protein TolQ
D Thimo_0572 TolR protein K03560 tolR; biopolymer transport protein TolR
D Thimo_2802 biopolymer transport protein K03560 tolR; biopolymer transport protein TolR
D Thimo_1158 magnesium Mg(2+) and cobalt Co(2+) transport protein CorA K03284 corA; magnesium transporter
D Thimo_2347 crcB protein K06199 crcB; fluoride exporter
D Thimo_3153 hypothetical protein K19058 merC; mercuric ion transport protein
D Thimo_3542 CBS domain-containing protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Thimo_1926 putative Mg2+ and Co2+ transporter CorB K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Thimo_2940 outer membrane protein/peptidoglycan-associated (lipo)protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D Thimo_2880 long-chain fatty acid transport protein K06076 fadL; long-chain fatty acid transport protein
D Thimo_2636 long-chain fatty acid transport protein K06076 fadL; long-chain fatty acid transport protein
D Thimo_1444 TonB-dependent vitamin B12 receptor K16092 btuB; vitamin B12 transporter
D Thimo_2500 outer membrane cobalamin receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Thimo_3184 outer membrane receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Thimo_3189 outer membrane receptor for ferrienterochelin and colicins K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Thimo_1100 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D Thimo_3145 efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D Thimo_0980 periplasmic protein involved in polysaccharide export K01991 wza; polysaccharide biosynthesis/export protein
D Thimo_3082 periplasmic protein involved in polysaccharide export K01991 wza; polysaccharide biosynthesis/export protein
D Thimo_0727 outer membrane protein assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family
D Thimo_1888 outer membrane assembly lipoprotein YfgL K17713 bamB; outer membrane protein assembly factor BamB
D Thimo_2964 putative lipoprotein K07287 bamC; outer membrane protein assembly factor BamC
D Thimo_2187 outer membrane assembly lipoprotein YfiO K05807 bamD; outer membrane protein assembly factor BamD
D Thimo_2542 small protein A (tmRNA-binding) K06186 bamE; outer membrane protein assembly factor BamE
D Thimo_0413 outer membrane protein K07278 tamA; translocation and assembly module TamA
D Thimo_0412 hypothetical protein K09800 tamB; translocation and assembly module TamB
D Thimo_2759 lipopolysaccharide transport periplasmic protein LptA K09774 lptA; lipopolysaccharide export system protein LptA
D Thimo_2758 hypothetical protein K11719 lptC; lipopolysaccharide export system protein LptC
D Thimo_3267 organic solvent tolerance protein OstA K04744 lptD; LPS-assembly protein
D Thimo_1083 Rare lipoprotein B K03643 lptE; LPS-assembly lipoprotein
D Thimo_0667 putative Mg2+ and Co2+ transporter CorC K06189 corC; hemolysin (HlyC) family protein
D Thimo_0829 putative effector of murein hydrolase LrgA K06518 cidA; holin-like protein
D Thimo_0492 putative divalent heavy-metal cations transporter K07238 TC.ZIP; zinc transporter, ZIP family
D Thimo_1931 cation/multidrug efflux pump K18138 acrB; multidrug efflux pump
D Thimo_0850 hydrophobe/amphiphile efflux-1 (HAE1) family transporter K18138 acrB; multidrug efflux pump
D Thimo_1868 cation/multidrug efflux pump K18138 acrB; multidrug efflux pump
D Thimo_1979 hydrophobe/amphiphile efflux-1 (HAE1) family transporter K18138 acrB; multidrug efflux pump
D Thimo_3144 hydrophobe/amphiphile efflux-1 (HAE1) family transporter K18146 adeB; multidrug efflux pump
D Thimo_1557 choline/carnitine/betaine transport K02168 betT; choline/glycine/proline betaine transport protein
D Thimo_2611 tellurite resistance protein-like permease K03304 tehA; tellurite resistance protein
D Thimo_1396 Ca2+/Na+ antiporter K07301 yrbG; cation:H+ antiporter
D Thimo_2164 sodium/proline symporter K11928 putP; sodium/proline symporter
D Thimo_1294 putative sodium:solute symporter, VC_2705 subfamily K14393 actP; cation/acetate symporter
D Thimo_3383 NhaP-type Na+(K+)/H+ antiporter K03316 nhaP; Na+:H+ antiporter
D Thimo_1549 Kef-type K+ transport system, membrane component K26730 napA; Na+:H+ antiporter
D Thimo_1240 potassium uptake protein, TrkH family K03498 trkH; trk/ktr system potassium uptake protein
D Thimo_1265 potassium uptake protein, TrkH family K03498 trkH; trk/ktr system potassium uptake protein
D Thimo_1550 Trk-type K+ transport system, membrane component K03498 trkH; trk/ktr system potassium uptake protein
D Thimo_1241 K+ transport system, NAD-binding component K03499 trkA; trk/ktr system potassium uptake protein
D Thimo_1551 K+ transport system, NAD-binding component K03499 trkA; trk/ktr system potassium uptake protein
D Thimo_2087 chloride channel protein EriC K03281 clcA; chloride channel protein, CIC family
D Thimo_2160 high affinity sulfate transporter 1 K03321 TC.SULP; sulfate permease, SulP family
D Thimo_2533 tripartite ATP-independent periplasmic transporter solute receptor, DctP family K11688 dctP; C4-dicarboxylate-binding protein DctP
D Thimo_2532 TRAP-type C4-dicarboxylate transport system, small permease component K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D Thimo_2531 TRAP-type C4-dicarboxylate transport system, large permease component K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D Thimo_3523 Na+/phosphate symporter K03324 yjbB; phosphate:Na+ symporter
D Thimo_1814 arsenical-resistance protein K03325 ACR3; arsenite transporter
D Thimo_1792 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/multisubunit Na+/H+ antiporter, MnhA subunit K05559 phaA; multicomponent K+:H+ antiporter subunit A
D Thimo_1791 multisubunit Na+/H+ antiporter, MnhC subunit K05560 phaC; multicomponent K+:H+ antiporter subunit C
D Thimo_1790 formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter, MnhD subunit K05561 phaD; multicomponent K+:H+ antiporter subunit D
D Thimo_1789 multisubunit Na+/H+ antiporter, MnhE subunit K05562 phaE; multicomponent K+:H+ antiporter subunit E
D Thimo_1788 multisubunit Na+/H+ antiporter, MnhF subunit K05563 phaF; multicomponent K+:H+ antiporter subunit F
D Thimo_1787 monovalent cation/proton antiporter, MnhG/PhaG subunit K05564 phaG; multicomponent K+:H+ antiporter subunit G
D Thimo_2405 multisubunit Na+/H+ antiporter, MnhB subunit K05566 mnhB; multicomponent Na+:H+ antiporter subunit B
D Thimo_2406 multisubunit Na+/H+ antiporter, MnhC subunit K05567 mnhC; multicomponent Na+:H+ antiporter subunit C
D Thimo_2407 formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter, MnhD subunit K05568 mnhD; multicomponent Na+:H+ antiporter subunit D
D Thimo_2414 multisubunit Na+/H+ antiporter, MnhE subunit K05569 mnhE; multicomponent Na+:H+ antiporter subunit E
D Thimo_2403 monovalent cation/proton antiporter, MnhG/PhaG subunit K05571 mnhG; multicomponent Na+:H+ antiporter subunit G
D Thimo_1141 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D Thimo_2088 putative permease K13936 mdcF; malonate transporter and related proteins
D Thimo_1134 putative permease K24180 mleP; malate permease and related proteins
D Thimo_2633 putative permease K03548 perM; putative permease
D Thimo_3112 cell division protein FtsW K03588 ftsW; cell division protein FtsW
D Thimo_0657 high-affinity Fe2+/Pb2+ permease K07243 FTR; high-affinity iron transporter
D Thimo_2496 TonB family protein K03832 tonB; periplasmic protein TonB
D Thimo_2552 TonB family protein K03832 tonB; periplasmic protein TonB
D Thimo_2803 TonB family protein K03832 tonB; periplasmic protein TonB
D Thimo_3185 TonB family protein K03832 tonB; periplasmic protein TonB
D Thimo_0575 peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein
D Thimo_0573 TolA protein K03646 tolA; colicin import membrane protein
D Thimo_0574 tol-pal system beta propeller repeat protein TolB K03641 tolB; TolB protein
D Thimo_1757 periplasmic component of the Tol biopolymer transport system K03641 tolB; TolB protein
D Thimo_1199 vacuolar-type H(+)-translocating pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1]
D Thimo_1932 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Thimo_1980 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Thimo_0849 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Thimo_1869 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Thimo_3480 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Thimo_1229 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Thimo_3143 RND family efflux transporter, MFP subunit K18145 adeA; membrane fusion protein, multidrug efflux system
D Thimo_2665 capsular exopolysaccharide biosynthesis protein K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3]
D Thimo_3079 ATPase involved in chromosome partitioning K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3]
D Thimo_3080 uncharacterized protein involved in exopolysaccharide biosynthesis K25590 epsF; protein tyrosine kinase modulator
D Thimo_1796 Fe2+ transport system protein A K04758 feoA; ferrous iron transport protein A
D Thimo_1797 Fe2+ transport system protein A K04758 feoA; ferrous iron transport protein A
D Thimo_1795 ferrous iron transporter FeoB K04759 feoB; ferrous iron transport protein B
D Thimo_1222 Fe2+ transport system protein B K04759 feoB; ferrous iron transport protein B
D Thimo_1794 transcriptional regulator of sugar metabolism K10123 feoC; putative ferrous iron transport protein C
D Thimo_1353 c-type cytochrome biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF
C 02044 Secretion system [BR:tmb02044]
D Thimo_1100 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D Thimo_2011 type II secretory pathway, component ExeA (predicted ATPase) K02450 gspA; general secretion pathway protein A
D Thimo_2010 hypothetical protein K02451 gspB; general secretion pathway protein B
D Thimo_0652 type II secretory pathway, component PulD K02453 gspD; general secretion pathway protein D
D Thimo_0054 general secretion pathway protein D K02453 gspD; general secretion pathway protein D
D Thimo_0044 general secretory pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D Thimo_0649 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D Thimo_0045 type II secretory pathway, component PulF K02455 gspF; general secretion pathway protein F
D Thimo_0046 general secretion pathway protein G K02456 gspG; general secretion pathway protein G
D Thimo_0047 general secretion pathway protein H K02457 gspH; general secretion pathway protein H
D Thimo_0048 prepilin-type N-terminal cleavage/methylation domain-containing protein K02458 gspI; general secretion pathway protein I
D Thimo_0049 prepilin-type N-terminal cleavage/methylation domain-containing protein K02459 gspJ; general secretion pathway protein J
D Thimo_0050 type II secretory pathway, component PulK K02460 gspK; general secretion pathway protein K
D Thimo_0051 Tfp pilus assembly protein PilN K02461 gspL; general secretion pathway protein L
D Thimo_0052 General secretion pathway protein M K02462 gspM; general secretion pathway protein M
D Thimo_0053 hypothetical protein K02463 gspN; general secretion pathway protein N
D Thimo_1048 prepilin signal peptidase PulO-like peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Thimo_0013 prepilin-type N-terminal cleavage/methylation domain-containing protein K02650 pilA; type IV pilus assembly protein PilA
D Thimo_0693 prepilin-type N-terminal cleavage/methylation domain-containing protein K02650 pilA; type IV pilus assembly protein PilA
D Thimo_1050 type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB
D Thimo_1049 type II secretory pathway, component PulF K02653 pilC; type IV pilus assembly protein PilC
D Thimo_3164 prepilin-type N-terminal cleavage/methylation domain-containing protein K02655 pilE; type IV pilus assembly protein PilE
D Thimo_0807 prepilin-type N-terminal cleavage/methylation domain-containing protein K02655 pilE; type IV pilus assembly protein PilE
D Thimo_1892 type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF
D Thimo_0083 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D Thimo_0084 Tfp pilus assembly protein PilN K02663 pilN; type IV pilus assembly protein PilN
D Thimo_0085 Tfp pilus assembly protein PilO K02664 pilO; type IV pilus assembly protein PilO
D Thimo_0086 Tfp pilus assembly protein PilP K02665 pilP; type IV pilus assembly protein PilP
D Thimo_0087 type IV pilus secretin PilQ/competence protein K02666 pilQ; type IV pilus assembly protein PilQ
D Thimo_0648 pilus retraction protein PilT K02669 pilT; twitching motility protein PilT
D Thimo_0690 pilus retraction protein PilT K02669 pilT; twitching motility protein PilT
D Thimo_0689 pilus retraction protein PilT K02670 pilU; twitching motility protein PilU
D Thimo_3168 type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV
D Thimo_3167 prepilin-type N-terminal cleavage/methylation domain-containing protein K02672 pilW; type IV pilus assembly protein PilW
D Thimo_3166 Tfp pilus assembly protein PilX K02673 pilX; type IV pilus assembly protein PilX
D Thimo_3165 Tfp pilus assembly protein, tip-associated adhesin PilY1 K02674 pilY1; type IV pilus assembly protein PilY1
D Thimo_2373 Tfp pilus assembly protein PilZ K02676 pilZ; type IV pilus assembly protein PilZ
D Thimo_3169 prepilin-type N-terminal cleavage/methylation domain-containing protein K08084 fimT; type IV fimbrial biogenesis protein FimT
D Thimo_2652 FimV C-terminal domain protein K08086 fimV; pilus assembly protein FimV
D Thimo_0748 putative integral membrane protein K02221 yggT; YggT family protein
D Thimo_0191 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC
D Thimo_0284 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D Thimo_0283 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D Thimo_0270 flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF K02409 fliF; flagellar M-ring protein FliF
D Thimo_0272 flagellar biosynthesis/type III secretory pathway protein K02411 fliH; flagellar assembly protein FliH
D Thimo_0273 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D Thimo_0278 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D Thimo_0279 flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
D Thimo_0280 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D Thimo_0281 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D Thimo_0282 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D Thimo_3750 transglycosylase family protein K03194 virB1; type IV secretion system protein VirB1
D Thimo_3751 type IV secretory pathway, VirB2 component (pilin) K03197 virB2; type IV secretion system protein VirB2
D Thimo_3752 type IV secretory pathway, VirB3 component K03198 virB3; type IV secretion system protein VirB3
D Thimo_3753 type IV secretory pathway, VirB4 component K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D Thimo_3754 Type IV secretion system protein K03200 virB5; type IV secretion system protein VirB5
D Thimo_3756 type IV secretory pathway, VirB6 component K03201 virB6; type IV secretion system protein VirB6
D Thimo_3758 type IV secretory pathway, component VirB8 K03203 virB8; type IV secretion system protein VirB8
D Thimo_3759 type IV secretory pathway, VirB9 component K03204 virB9; type IV secretion system protein VirB9
D Thimo_3760 type IV secretory pathway, VirB10 component K03195 virB10; type IV secretion system protein VirB10
D Thimo_3761 ATPase, type IV secretory pathway VirB11 component like protein K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D Thimo_3762 type IV secretory pathway, VirD4 component K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D Thimo_0895 muramidase (phage lambda lysozyme) K12056 traG; conjugal transfer mating pair stabilization protein TraG
D Thimo_0893 TraF-like protein K12057 traF; conjugal transfer pilus assembly protein TraF
D Thimo_1481 protein-disulfide isomerase K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D Thimo_0894 Conjugative relaxosome accessory transposon protein K12072 traH; conjugative transfer pilus assembly protein TraH
D Thimo_3385 hypothetical protein K04335 csgB; minor curlin subunit
D Thimo_3665 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Thimo_3673 protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D Thimo_1062 protein-export membrane protein, SecD/SecF family K03072 secD; preprotein translocase subunit SecD
D Thimo_2873 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D Thimo_1063 protein-export membrane protein, SecD/SecF family K03074 secF; preprotein translocase subunit SecF
D Thimo_0583 protein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D Thimo_2840 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D Thimo_0513 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Thimo_3622 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Thimo_1061 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D Thimo_3702 preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Thimo_1850 twin arginine-targeting protein translocase, TatA/E family K03116 tatA; sec-independent protein translocase protein TatA
D Thimo_1851 twin arginine-targeting protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB
D Thimo_1852 twin arginine targeting protein translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:tmb02042]
D Thimo_3542 CBS domain-containing protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Thimo_1926 putative Mg2+ and Co2+ transporter CorB K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Thimo_3156 channel protein, hemolysin III family K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:tmb02022]
D Thimo_3296 phosphate regulon sensor kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Thimo_2145 histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Thimo_3297 phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D Thimo_2146 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K07776 regX3; two-component system, OmpR family, response regulator RegX3
D Thimo_3196 signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D Thimo_3197 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K07660 phoP; two-component system, OmpR family, response regulator PhoP
D Thimo_2063 signal transduction histidine kinase K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D Thimo_2062 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB
D Thimo_3426 histidine kinase,HAMP domain-containing protein,histidine kinase K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D Thimo_3427 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K07664 baeR; two-component system, OmpR family, response regulator BaeR
D Thimo_3141 signal transduction histidine kinase K18143 adeS; two-component system, OmpR family, sensor histidine kinase AdeS [EC:2.7.13.3]
D Thimo_3142 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K18144 adeR; two-component system, OmpR family, response regulator AdeR
D Thimo_2361 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K02483 K02483; two-component system, OmpR family, response regulator
D Thimo_3558 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K02483 K02483; two-component system, OmpR family, response regulator
D Thimo_1724 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K02483 K02483; two-component system, OmpR family, response regulator
D Thimo_2334 signal transduction histidine kinase, nitrate/nitrite-specific K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D Thimo_2335 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL
D Thimo_2618 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D Thimo_3680 signal transduction histidine kinase, nitrogen specific K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D Thimo_3679 nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D Thimo_1243 signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D Thimo_1242 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D Thimo_2190 signal transduction histidine kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D Thimo_2191 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K02667 pilR; two-component system, NtrC family, response regulator PilR
D Thimo_1571 chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Thimo_2489 methylase of chemotaxis methyl-accepting protein K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D Thimo_1570 PAS domain S-box K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D Thimo_2462 PAS domain S-box K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D Thimo_2816 methylase of chemotaxis methyl-accepting protein K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D Thimo_2323 PAS domain S-box K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
D Thimo_2466 response regulator K14987 fixJ; two-component system, LuxR family, response regulator FixJ
D Thimo_0268 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K10943 flrC; two-component system, response regulator FlrC
D Thimo_1691 signal transduction histidine kinase K10715 rpfC; two-component system, sensor histidine kinase RpfC [EC:2.7.13.3]
D Thimo_1690 response regulator containing a CheY-like receiver domain and an HD-GYP domain K13815 rpfG; two-component system, response regulator RpfG
D Thimo_0509 HPt domain-containing protein K20976 hptB; histidine phosphotransfer protein HptB
D Thimo_0540 signal transduction histidine kinase K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
C 02035 Bacterial motility proteins [BR:tmb02035]
D Thimo_1571 chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Thimo_2489 methylase of chemotaxis methyl-accepting protein K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D Thimo_1570 PAS domain S-box K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D Thimo_2462 PAS domain S-box K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D Thimo_2816 methylase of chemotaxis methyl-accepting protein K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D Thimo_0272 flagellar biosynthesis/type III secretory pathway protein K02411 fliH; flagellar assembly protein FliH
D Thimo_0273 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D Thimo_0274 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D Thimo_0279 flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
D Thimo_0280 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D Thimo_0281 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D Thimo_0282 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D Thimo_0284 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D Thimo_0283 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D Thimo_0271 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D Thimo_0277 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D Thimo_0278 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D Thimo_0270 flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF K02409 fliF; flagellar M-ring protein FliF
D Thimo_3495 flagellar basal-body P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D Thimo_0291 flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D Thimo_3496 flagellar basal body L-ring protein K02393 flgH; flagellar L-ring protein FlgH
D Thimo_0276 flagellar basal body-associated protein K02415 fliL; flagellar protein FliL
D Thimo_0269 flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D Thimo_0275 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D Thimo_3502 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D Thimo_3501 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D Thimo_3500 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D Thimo_3498 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D Thimo_3497 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D Thimo_3494 flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D Thimo_3499 flagellar hook-basal body protein K02390 flgE; flagellar hook protein FlgE
D Thimo_3493 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D Thimo_3492 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D Thimo_0263 flagellin/flagellar hook associated protein K02406 fliC; flagellin
D Thimo_0265 flagellar capping protein K02407 fliD; flagellar hook-associated protein 2
D Thimo_0261 flagellar biosynthetic protein FliS K02422 fliS; flagellar secretion chaperone FliS
D Thimo_0262 hypothetical protein K02423 fliT; flagellar protein FliT
D Thimo_0287 RNA polymerase sigma factor, FliA/WhiG family K02405 fliA; RNA polymerase sigma factor FliA
D Thimo_0294 flagellar motor component K02556 motA; chemotaxis protein MotA
D Thimo_0293 flagellar motor protein K02557 motB; chemotaxis protein MotB
D Thimo_1777 flagellar motor protein K02557 motB; chemotaxis protein MotB
D Thimo_0267 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D Thimo_0268 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K10943 flrC; two-component system, response regulator FlrC
D Thimo_0290 flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D Thimo_0264 flagellar protein FlaG K06603 flaG; flagellar protein FlaG
D Thimo_0285 flagellar biosynthetic protein FlhF K02404 flhF; flagellar biosynthesis protein FlhF
D Thimo_0286 ATPase involved in chromosome partitioning K04562 flhG; flagellar biosynthesis protein FlhG
D Thimo_2191 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K02667 pilR; two-component system, NtrC family, response regulator PilR
D Thimo_2190 signal transduction histidine kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D Thimo_0648 pilus retraction protein PilT K02669 pilT; twitching motility protein PilT
D Thimo_0690 pilus retraction protein PilT K02669 pilT; twitching motility protein PilT
D Thimo_0689 pilus retraction protein PilT K02670 pilU; twitching motility protein PilU
D Thimo_0013 prepilin-type N-terminal cleavage/methylation domain-containing protein K02650 pilA; type IV pilus assembly protein PilA
D Thimo_0693 prepilin-type N-terminal cleavage/methylation domain-containing protein K02650 pilA; type IV pilus assembly protein PilA
D Thimo_1050 type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB
D Thimo_1049 type II secretory pathway, component PulF K02653 pilC; type IV pilus assembly protein PilC
D Thimo_1048 prepilin signal peptidase PulO-like peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Thimo_1892 type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF
D Thimo_0087 type IV pilus secretin PilQ/competence protein K02666 pilQ; type IV pilus assembly protein PilQ
D Thimo_0086 Tfp pilus assembly protein PilP K02665 pilP; type IV pilus assembly protein PilP
D Thimo_0085 Tfp pilus assembly protein PilO K02664 pilO; type IV pilus assembly protein PilO
D Thimo_0084 Tfp pilus assembly protein PilN K02663 pilN; type IV pilus assembly protein PilN
D Thimo_0083 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D Thimo_2373 Tfp pilus assembly protein PilZ K02676 pilZ; type IV pilus assembly protein PilZ
D Thimo_3168 type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV
D Thimo_3167 prepilin-type N-terminal cleavage/methylation domain-containing protein K02672 pilW; type IV pilus assembly protein PilW
D Thimo_3166 Tfp pilus assembly protein PilX K02673 pilX; type IV pilus assembly protein PilX
D Thimo_3165 Tfp pilus assembly protein, tip-associated adhesin PilY1 K02674 pilY1; type IV pilus assembly protein PilY1
D Thimo_3164 prepilin-type N-terminal cleavage/methylation domain-containing protein K02655 pilE; type IV pilus assembly protein PilE
D Thimo_0807 prepilin-type N-terminal cleavage/methylation domain-containing protein K02655 pilE; type IV pilus assembly protein PilE
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:tmb04812]
D Thimo_3050 putative dioxygenase K06990 MEMO1; MEMO1 family protein
D Thimo_2784 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D Thimo_3105 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Thimo_3106 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D Thimo_2001 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D Thimo_2000 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D Thimo_1999 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D Thimo_1162 ATPase involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D Thimo_3739 ATPase involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D Thimo_3767 ATPase involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D Thimo_2227 ATPase involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D Thimo_1163 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Thimo_3738 putative transcriptional regulator K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:tmb04147]
D Thimo_3042 molecular chaperone of HSP90 family K04079 HSP90A; molecular chaperone HtpG
D Thimo_1323 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Thimo_2175 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Thimo_2174 3-phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Thimo_2891 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Thimo_2173 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Thimo_0175 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Thimo_2536 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Thimo_3517 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Thimo_3598 inosine-5''-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D Thimo_2862 translation elongation factor TU K02358 tuf; elongation factor Tu
D Thimo_2875 translation elongation factor TU K02358 tuf; elongation factor Tu
D Thimo_2002 HIT family hydrolase, diadenosine tetraphosphate hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D Thimo_0427 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Thimo_2040 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Thimo_1880 uncharacterized protein, 4-oxalocrotonate tautomerase K07253 MIF; phenylpyruvate tautomerase [EC:5.3.2.1]
D Thimo_1642 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Thimo_2179 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D Thimo_0844 adenylate kinase family protein K00939 adk; adenylate kinase [EC:2.7.4.3]
D Thimo_1071 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Thimo_1695 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Thimo_2630 fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D Thimo_3319 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D Thimo_3682 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Thimo_0133 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D Thimo_2207 sugar kinase, ribokinase K00846 KHK; ketohexokinase [EC:2.7.1.3]
D Thimo_1374 pterin-4a-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D Thimo_1110 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D Thimo_1301 phosphoglycerate dehydrogenase-like oxidoreductase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Thimo_0187 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Thimo_1085 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Thimo_0439 electron transfer flavoprotein, alpha subunit K03522 fixB; electron transfer flavoprotein alpha subunit
D Thimo_3516 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D Thimo_3038 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D Thimo_0582 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Thimo_1389 phosphoglycerate mutase, BPG-dependent, family 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Thimo_2981 bacterial lipocalin K03098 APOD; apolipoprotein D and lipocalin family protein
C 02048 Prokaryotic defense system [BR:tmb02048]
D Thimo_1276 CRISPR-associated endonuclease Cas1/CRISPR-associated protein Cas4 K15342 cas1; CRISP-associated protein Cas1
D Thimo_0326 CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1
D Thimo_0324 uncharacterized protein predicted to be involved in DNA repair K09951 cas2; CRISPR-associated protein Cas2
D Thimo_0325 CRISPR-associated endoribonuclease Cas2 K09951 cas2; CRISPR-associated protein Cas2
D Thimo_1275 CRISPR-associated endoribonuclease Cas2 K09951 cas2; CRISPR-associated protein Cas2
D Thimo_1278 CRISPR-associated helicase Cas3, subtype Dpsyc K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D Thimo_1280 CRISPR-associated protein, GSU0053 family K19131 csb1; CRISPR-associated protein Csb1
D Thimo_1279 CRISPR-associated protein GSU0054/csb2, Dpsyc system K19132 csb2; CRISPR-associated protein Csb2
D Thimo_0319 CRISPR type III-B/RAMP module RAMP protein Cmr1 K07061 cmr1; CRISPR-associated protein Cmr1
D Thimo_0318 CRISPR-associated protein Cas10/Cmr2, subtype III-B K19076 cmr2; CRISPR-associated protein Cmr2
D Thimo_0317 CRISPR-associated protein (Cas_Cmr3) K09127 cmr3; CRISPR-associated protein Cmr3
D Thimo_0316 CRISPR type III-B/RAMP module RAMP protein Cmr4 K09000 cmr4; CRISPR-associated protein Cmr4
D Thimo_0315 CRISPR type III-B/RAMP module-associated protein Cmr5 K19141 cmr5; CRISPR-associated protein Cmr5
D Thimo_0314 CRISPR type III-B/RAMP module RAMP protein Cmr6 K19142 cmr6; CRISPR-associated protein Cmr6
D Thimo_1984 helicase, type I site-specific restriction-modification system restriction subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D Thimo_3461 helicase, type I site-specific restriction-modification system restriction subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D Thimo_3452 restriction endonuclease S subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D Thimo_1990 restriction endonuclease S subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D Thimo_1985 type I restriction-modification system methyltransferase subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D Thimo_3451 type I restriction-modification system methyltransferase subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D Thimo_3473 type I restriction-modification system methyltransferase subunit K07317 K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D Thimo_3409 Type III restriction enzyme, res subunit K01156 res; type III restriction enzyme [EC:3.1.21.5]
D Thimo_3413 adenine specific DNA methylase Mod K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D Thimo_0033 looped-hinge helix DNA binding domain, AbrB family K19156 prlF; antitoxin PrlF
D Thimo_2193 cytotoxic translational repressor of toxin-antitoxin stability system K06218 relE; mRNA interferase RelE/StbE
D Thimo_1908 putative DNA-binding protein with an HTH domain K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D Thimo_2201 toxin-antitoxin system, toxin component, Txe/YoeB family K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D Thimo_2202 prevent-host-death family protein K19159 yefM; antitoxin YefM
D Thimo_3729 plasmid stabilization system protein K19092 parE1_3_4; toxin ParE1/3/4
D Thimo_0394 plasmid stabilization system protein K19092 parE1_3_4; toxin ParE1/3/4
D Thimo_3728 putative addiction module antidote protein, CC2985 family K07746 parD1_3_4; antitoxin ParD1/3/4
D Thimo_3454 plasmid maintenance system killer protein K07334 higB-1; toxin HigB-1
D Thimo_1719 plasmid maintenance system killer protein K07334 higB-1; toxin HigB-1
D Thimo_1909 addiction module antidote protein, HigA family K21498 higA-1; antitoxin HigA-1
D Thimo_0199 addiction module antidote protein, HigA family K21498 higA-1; antitoxin HigA-1
D Thimo_3455 addiction module antidote protein, HigA family K21498 higA-1; antitoxin HigA-1
D Thimo_1718 addiction module antidote protein, HigA family K21498 higA-1; antitoxin HigA-1
D Thimo_0407 hypothetical protein K19686 vapC; ribonuclease VapC [EC:3.1.-.-]
D Thimo_0406 hypothetical protein K19687 vapB; antitoxin VapB
D Thimo_2300 plasmid stability protein K21495 fitA; antitoxin FitA
D Thimo_3105 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Thimo_2784 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D Thimo_0452 DNA topoisomerase IV, A subunit, proteobacterial K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D Thimo_1786 DNA topoisomerase IV, B subunit, proteobacterial K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D Thimo_2078 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Thimo_0682 hypothetical protein K19168 cptA; toxin CptA
D Thimo_0468 hypothetical protein K09159 cptB; antitoxin CptB
D Thimo_2710 cysteine desulfurase DndA K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Thimo_2711 DNA sulfur modification protein DndB K19169 dndB; DNA sulfur modification protein DndB
D Thimo_2712 putative sulfurtransferase DndC K19170 dndC; DNA sulfur modification protein DndC
D Thimo_2717 hypothetical protein K19171 dndD; DNA sulfur modification protein DndD
D Thimo_2713 DNA sulfur modification protein DndD K19171 dndD; DNA sulfur modification protein DndD
D Thimo_2714 DNA sulfur modification protein DndE K19172 dndE; DNA sulfur modification protein DndE
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:tmb04090]
C 01504 Antimicrobial resistance genes [BR:tmb01504]
D Thimo_2709 beta-lactamase class A K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D Thimo_1865 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D Thimo_3566 hypothetical protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
D Thimo_3196 signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D Thimo_3197 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K07660 phoP; two-component system, OmpR family, response regulator PhoP
D Thimo_1932 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Thimo_1980 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Thimo_0849 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Thimo_1869 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Thimo_3480 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Thimo_1229 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D Thimo_1931 cation/multidrug efflux pump K18138 acrB; multidrug efflux pump
D Thimo_0850 hydrophobe/amphiphile efflux-1 (HAE1) family transporter K18138 acrB; multidrug efflux pump
D Thimo_1868 cation/multidrug efflux pump K18138 acrB; multidrug efflux pump
D Thimo_1979 hydrophobe/amphiphile efflux-1 (HAE1) family transporter K18138 acrB; multidrug efflux pump
D Thimo_3145 efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D Thimo_3391 putative transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D Thimo_3141 signal transduction histidine kinase K18143 adeS; two-component system, OmpR family, sensor histidine kinase AdeS [EC:2.7.13.3]
D Thimo_3142 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K18144 adeR; two-component system, OmpR family, response regulator AdeR
D Thimo_3143 RND family efflux transporter, MFP subunit K18145 adeA; membrane fusion protein, multidrug efflux system
D Thimo_3144 hydrophobe/amphiphile efflux-1 (HAE1) family transporter K18146 adeB; multidrug efflux pump
D Thimo_1100 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:tmb00537]
D Thimo_1110 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:tmb03100]
D Thimo_3419 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Thimo_1037 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Thimo_2261 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Thimo_3307 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Thimo_2031 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Thimo_0620 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Thimo_3095 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Thimo_3150 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Thimo_1817 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Thimo_0435 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Thimo_2364 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D Thimo_1185 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Thimo_3134 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Thimo_3418 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Thimo_3509 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Thimo_2615 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Thimo_2877 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Thimo_2039 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Thimo_0621 tRNA-His K14226 tRNA-His; tRNA His
D Thimo_1036 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Thimo_3308 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Thimo_0519 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Thimo_0584 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Thimo_1056 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Thimo_2333 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Thimo_2357 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Thimo_0622 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Thimo_0888 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Thimo_2628 tRNA-Met K14230 tRNA-Met; tRNA Met
D Thimo_1599 tRNA-Met K14230 tRNA-Met; tRNA Met
D Thimo_0551 tRNA-Met K14230 tRNA-Met; tRNA Met
D Thimo_2035 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Thimo_0505 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Thimo_0619 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Thimo_1312 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Thimo_1148 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Thimo_2425 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Thimo_2619 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Thimo_3462 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Thimo_2876 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Thimo_1782 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Thimo_2493 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Thimo_2874 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D Thimo_2878 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Thimo_0434 tRNA-Val K14237 tRNA-Val; tRNA Val
D Thimo_2829 tRNA-Val K14237 tRNA-Val; tRNA Val
D Thimo_2893 tRNA-Val K14237 tRNA-Val; tRNA Val
D Thimo_1035 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Thimo_3309 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Thimo_1038 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Thimo_3306 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Thimo_1039 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Thimo_3305 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Thimo_2005 Bacterial signal recognition particle RNA K01983 ffs; SRP RNA
D Thimo_3121 Bacterial RNase P class A K01978 rnpB; M1 RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D Thimo_0392 dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein K16216 yueD; benzil reductase ((S)-benzoin forming) [EC:1.1.1.320]
D Thimo_1700 pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component alpha subunit K21416 acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [EC:1.1.1.-]
D Thimo_1699 pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit K21417 acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta [EC:1.1.1.-]
D Thimo_1745 glucose/sorbosone dehydrogenase K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-]
D Thimo_3250 putative flavoprotein K22405 fprA1_2; NADH oxidase (H2O-forming) [EC:1.6.3.4]
D Thimo_1742 Zn-dependent oxidoreductase, NADPH:quinone reductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D Thimo_1041 glutathione-disulfide reductase, animal/bacterial K23076 garB; glutathione amide reductase [EC:1.8.1.16]
D Thimo_0460 cytochrome c K19713 tsdA; thiosulfate dehydrogenase [EC:1.8.2.2]
D Thimo_1058 methionine-S-sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D Thimo_0450 methionine-S-sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D Thimo_0380 methionine-R-sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D Thimo_2702 cytochrome c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D Thimo_1042 Glutaredoxin-family domain protein K23075 garA; glutathione amide-dependent peroxidase [EC:1.11.1.17]
D Thimo_2967 Peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D Thimo_0092 Peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D Thimo_1680 peroxiredoxin K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D Thimo_2354 coenzyme F420-reducing hydrogenase, alpha subunit K00436 hoxH; NAD-reducing hydrogenase large subunit [EC:1.12.1.2]
D Thimo_2353 coenzyme F420-reducing hydrogenase, gamma subunit K18007 hoxY; NAD-reducing hydrogenase small subunit [EC:1.12.1.2]
D Thimo_0124 flavodoxin reductase family protein K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D Thimo_1813 protein-tyrosine-phosphatase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D Thimo_3049 pyruvate-formate lyase-activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D Thimo_3468 anaerobic ribonucleoside-triphosphate reductase activating protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D Thimo_3203 formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter, MnhD subunit K12137 hyfB; hydrogenase-4 component B [EC:1.-.-.-]
D Thimo_3205 hydrogenase 4 membrane component (E) K12140 hyfE; hydrogenase-4 component E [EC:1.-.-.-]
D Thimo_3206 formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter, MnhD subunit K12141 hyfF; hydrogenase-4 component F [EC:1.-.-.-]
D Thimo_1330 protein-L-isoaspartate and D-aspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D Thimo_2368 protein-L-isoaspartate carboxylmethyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D Thimo_2935 protein-L-isoaspartate and D-aspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D Thimo_0379 methyltransferase, cyclopropane fatty acid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D Thimo_0937 methyltransferase, cyclopropane fatty acid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D Thimo_0060 apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D Thimo_1459 1-acyl-sn-glycerol-3-phosphate acyltransferase K22617 olsA; lyso-ornithine lipid O-acyltransferase [EC:2.3.1.270]
D Thimo_2449 leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D Thimo_0658 transglutaminase-like enzyme, predicted cysteine protease K22452 tgpA; protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13]
D Thimo_2698 transglutaminase-like enzyme, predicted cysteine protease K22452 tgpA; protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13]
D Thimo_2450 putative arginyl-tRNA:protein arginylyltransferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D Thimo_1142 glycosyltransferase K00754 bshA; L-malate glycosyltransferase [EC:2.4.1.-]
D Thimo_3246 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) K05951 draT; NAD+---dinitrogen-reductase ADP-D-ribosyltransferase [EC:2.4.2.37]
D Thimo_0617 putative molybdenum utilization protein ModD K03813 modD; molybdenum transport protein [EC:2.4.2.-]
D Thimo_2451 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D Thimo_2551 membrane-associated lipoprotein involved in thiamine biosynthesis K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D Thimo_2076 membrane-associated lipoprotein involved in thiamine biosynthesis K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D Thimo_1708 hypothetical protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D Thimo_1597 polyphosphate:AMP phosphotransferase K23753 ppk2; AMP-polyphosphate phosphotransferase [EC:2.7.4.33]
D Thimo_1704 glutamine synthetase adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D Thimo_0327 Retron-type reverse transcriptase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Thimo_3774 Retron-type reverse transcriptase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Thimo_0459 Retron-type reverse transcriptase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Thimo_0043 serine kinase of the HPr protein, regulates carbohydrate metabolism K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-]
D Thimo_2608 putative phosphatase, C-terminal domain of histone macro H2A1 like protein K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106]
D Thimo_0570 tol-pal system-associated acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D Thimo_1040 capsular polysaccharide biosynthesis protein K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]
D Thimo_0970 putative metal-dependent phosphoesterase, PHP family K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D Thimo_2400 phosphohistidine phosphatase SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D Thimo_3543 hypothetical protein K09116 K09116; damage-control phosphatase, subfamily I [EC:3.1.3.-]
D Thimo_2372 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D Thimo_1959 Mg-dependent DNase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D Thimo_3254 ADP-ribosyl-(dinitrogen reductase) hydrolase K05521 draG; ADP-ribosyl-[dinitrogen reductase] hydrolase [EC:3.2.2.24]
D Thimo_1247 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D Thimo_2183 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D Thimo_2603 putative amidohydrolase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D Thimo_0536 MAF protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]
D Thimo_0660 MoxR-like ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Thimo_1118 MoxR-like ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Thimo_1159 MoxR-like ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Thimo_2934 MoxR-like ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Thimo_2832 hypothetical protein K22205 E3.13.2.3; S-adenosyl-L-methionine hydrolase (adenosine-forming) [EC:3.13.2.3]
D Thimo_0924 putative esterase of the alpha/beta hydrolase fold protein K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D Thimo_1694 yjeF-like protein, hydroxyethylthiazole kinase-related protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D Thimo_0063 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D Thimo_1269 electron transport complex, RnfABCDGE type, D subunit K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D Thimo_0233 electron transport complex, RnfABCDGE type, D subunit K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D Thimo_0963 electron transport complex, RnfABCDGE type, D subunit K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D Thimo_1270 electron transport complex, RnfABCDGE type, C subunit K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D Thimo_0234 electron transport complex, RnfABCDGE type, C subunit K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D Thimo_0962 electron transport complex, RnfABCDGE type, C subunit K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D Thimo_1271 electron transport complex, RnfABCDGE type, B subunit K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D Thimo_0961 electron transport complex, RnfABCDGE type, B subunit K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D Thimo_0229 electron transport complex, RnfABCDGE type, B subunit K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D Thimo_1344 copper/silver-translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
D Thimo_0696 plasma-membrane calcium-translocating P-type ATPase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
C 99981 Carbohydrate metabolism
C 99982 Energy metabolism
D Thimo_1268 electron transport complex, RnfABCDGE type, G subunit K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D Thimo_0655 electron transport complex, RnfABCDGE type, G subunit K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D Thimo_0232 putative NADH:ubiquinone oxidoreductase, subunit RnfG K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D Thimo_0964 electron transport complex, RnfABCDGE type, G subunit K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D Thimo_1267 electron transport complex, RnfABCDGE type, E subunit K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D Thimo_0231 putative NADH:ubiquinone oxidoreductase, subunit RnfE K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D Thimo_0965 electron transport complex, RnfABCDGE type, E subunit K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D Thimo_1272 electron transport complex, RnfABCDGE type, A subunit K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D Thimo_0230 putative NADH:ubiquinone oxidoreductase, subunit RnfA K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D Thimo_0960 electron transport complex, RnfABCDGE type, A subunit K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D Thimo_3253 NifQ K15790 nifQ; nitrogen fixation protein NifQ
D Thimo_0471 CitB domain protein K13795 citB; citrate/tricarballylate utilization protein
D Thimo_0472 precorrin 3B synthase CobZ K13796 cobZ; tricarballylate dehydrogenase
D Thimo_0167 nitric oxide reductase activation protein K02448 norD; nitric oxide reductase NorD protein
D Thimo_0165 MoxR-like ATPase K04748 norQ; nitric oxide reductase NorQ protein
D Thimo_3645 hypothetical protein K02596 nifX; nitrogen fixation protein NifX
D Thimo_3242 putative nitrogen fixation protein FixT K02593 nifT; nitrogen fixation protein NifT
D Thimo_3231 NifZ domain-containing protein K02597 nifZ; nitrogen fixation protein NifZ
D Thimo_3248 nitrogenase cofactor biosynthesis protein NifB K02585 nifB; nitrogen fixation protein NifB
D Thimo_3646 nitrogenase molybdenum-iron cofactor biosynthesis protein NifN K02592 nifN; nitrogenase molybdenum-iron protein NifN
D Thimo_3647 nitrogenase molybdenum-iron cofactor biosynthesis protein NifE K02587 nifE; nitrogenase molybdenum-cofactor synthesis protein NifE
D Thimo_3361 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/multisubunit Na+/H+ antiporter, MnhA subunit K14086 echA; ech hydrogenase subunit A
D Thimo_3360 formate hydrogenlyase subunit 4 K14087 echB; ech hydrogenase subunit B
D Thimo_3359 Ni,Fe-hydrogenase III small subunit K14088 echC; ech hydrogenase subunit C
D Thimo_3358 NADH:ubiquinone oxidoreductase 27 kD subunit K14089 echD; ech hydrogenase subunit D
D Thimo_3357 Ni,Fe-hydrogenase III large subunit K14090 echE; ech hydrogenase subunit E
D Thimo_3356 hypothetical protein K14091 echF; ech hydrogenase subunit F
D Thimo_2404 putative subunit of the multisubunit Na+/H+ antiporter K14113 ehbD; energy-converting hydrogenase B subunit D
D Thimo_3247 nitrate/TMAO reductase, membrane-bound tetraheme cytochrome c subunit K02569 napC; cytochrome c-type protein NapC
D Thimo_0440 electron transfer flavoprotein, beta subunit K03521 fixA; electron transfer flavoprotein beta subunit
D Thimo_3232 Nitrogen fixation protein NifW K02595 nifW; nitrogenase-stabilizing/protective protein
D Thimo_1500 hypothetical protein K21694 cowN; N(2)-fixation sustaining protein CowN
D Thimo_0148 sulfur relay protein, TusE/DsrC/DsvC family K23077 dsrC; dissimilatory sulfite reductase related protein
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D Thimo_1655 uncharacterized protein involved in cysteine biosynthesis K06203 cysZ; CysZ protein
D Thimo_0750 pyridoxal phosphate enzyme, YggS family K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D Thimo_1711 putative N-acetylglucosaminyl transferase K19804 lapB; lipopolysaccharide assembly protein B
C 99987 Cofactor metabolism
D Thimo_0055 2-polyprenylphenol 6-hydroxylase K03688 ubiB; ubiquinone biosynthesis protein
D Thimo_0056 hypothetical protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D Thimo_0100 hypothetical protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
D Thimo_2775 putative lipid carrier protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT
D Thimo_1617 molybdopterin-guanine dinucleotide biosynthesis protein MobB K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
D Thimo_3013 putative magnesium chelatase accessory protein K06049 bchO; magnesium chelatase accessory protein
D Thimo_1129 putative magnesium chelatase accessory protein K06049 bchO; magnesium chelatase accessory protein
C 99988 Secondary metabolism
C 99999 Others
D Thimo_1810 acyl-CoA synthetase (NDP forming) K09181 yfiQ; acetyltransferase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D Thimo_3320 cold shock protein K03704 cspA; cold shock protein
D Thimo_2094 cold shock domain protein CspD K03704 cspA; cold shock protein
D Thimo_0098 nitrogen regulatory protein PII K04752 glnK; nitrogen regulatory protein P-II 2
D Thimo_0339 transcriptional accessory protein K06959 tex; protein Tex
C 99974 Translation
C 99975 Protein processing
D Thimo_2093 hypothetical protein K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D Thimo_0429 trigger factor K03545 tig; trigger factor
D Thimo_0581 SsrA-binding protein K03664 smpB; SsrA-binding protein
D Thimo_3270 hydrogenase assembly chaperone HypC/HupF K04653 hypC; hydrogenase expression/formation protein HypC
D Thimo_1706 hydrogenase assembly chaperone HypC/HupF K04653 hypC; hydrogenase expression/formation protein HypC
D Thimo_3269 hydrogenase expression/formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD
D Thimo_3268 hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE
D Thimo_1957 (NiFe) hydrogenase maturation protein HypF K04656 hypF; hydrogenase maturation protein HypF
D Thimo_0101 Mg chelatase-related protein K07391 comM; magnesium chelatase family protein
D Thimo_0699 putative proteasome-type protease K07395 K07395; putative proteasome-type protease
D Thimo_1835 putative dithiol-disulfide isomerase involved in polyketide biosynthesis K07396 K07396; putative protein-disulfide isomerase
D Thimo_0403 putative dithiol-disulfide isomerase involved in polyketide biosynthesis K07396 K07396; putative protein-disulfide isomerase
D Thimo_1179 putative redox protein, regulator of disulfide bond formation K07397 yhfA; putative redox protein
D Thimo_1072 putative redox protein, regulator of disulfide bond formation K07397 yhfA; putative redox protein
D Thimo_3322 membrane-bound serine protease (ClpP class) K07403 nfeD; membrane-bound serine protease (ClpP class)
C 99976 Replication and repair
D Thimo_2715 putative restriction endonuclease K07454 K07454; putative restriction endonuclease
D Thimo_3733 DNA repair protein K03630 radC; DNA repair protein RadC
D Thimo_3743 DNA repair protein K03630 radC; DNA repair protein RadC
D Thimo_0738 DNA repair protein radc K03630 radC; DNA repair protein RadC
D Thimo_1834 putative endonuclease III-like protein K07457 K07457; endonuclease III related protein
D Thimo_1466 TIGR00252 family protein K07460 yraN; putative endonuclease
D Thimo_1249 DNA protecting protein DprA K04096 smf; DNA processing protein
D Thimo_2444 AAA ATPase K07478 ycaJ; putative ATPase
D Thimo_2023 transposase, IS5 family K07481 K07481; transposase, IS5 family
D Thimo_1307 transposase K07483 K07483; transposase
D Thimo_1420 Transposase K07483 K07483; transposase
D Thimo_1424 hypothetical protein K07483 K07483; transposase
D Thimo_2314 Transposase K07483 K07483; transposase
D Thimo_1576 Transposase K07483 K07483; transposase
D Thimo_0804 transposase K07483 K07483; transposase
D Thimo_1670 Transposase K07483 K07483; transposase
D Thimo_0021 Transposase K07483 K07483; transposase
D Thimo_0911 transposase K07483 K07483; transposase
D Thimo_3531 Transposase K07483 K07483; transposase
D Thimo_1028 Transposase K07483 K07483; transposase
D Thimo_1122 transposase K07483 K07483; transposase
D Thimo_2029 Transposase K07483 K07483; transposase
D Thimo_0369 Transposase K07483 K07483; transposase
D Thimo_0371 Transposase K07483 K07483; transposase
D Thimo_2198 Transposase K07483 K07483; transposase
D Thimo_3065 Transposase K07483 K07483; transposase
D Thimo_0478 transposase K07483 K07483; transposase
D Thimo_2246 Transposase K07483 K07483; transposase
D Thimo_2253 Transposase K07483 K07483; transposase
D Thimo_0010 transposase K07484 K07484; transposase
D Thimo_3717 transposase K07484 K07484; transposase
D Thimo_3731 transposase K07484 K07484; transposase
D Thimo_3772 transposase K07484 K07484; transposase
D Thimo_0009 transposase K07484 K07484; transposase
D Thimo_3718 transposase K07484 K07484; transposase
D Thimo_3730 transposase K07484 K07484; transposase
D Thimo_3771 transposase K07484 K07484; transposase
D Thimo_3061 transposase K07484 K07484; transposase
D Thimo_1422 transposase family protein K07485 K07485; transposase
D Thimo_1000 transposase family protein K07485 K07485; transposase
D Thimo_2659 transposase K07491 rayT; REP-associated tyrosine transposase
D Thimo_2885 transposase K07491 rayT; REP-associated tyrosine transposase
D Thimo_2903 transposase K07491 rayT; REP-associated tyrosine transposase
D Thimo_0957 transposase K07491 rayT; REP-associated tyrosine transposase
D Thimo_0328 transposase K07491 rayT; REP-associated tyrosine transposase
D Thimo_1624 transposase K07491 rayT; REP-associated tyrosine transposase
D Thimo_3175 transposase K07491 rayT; REP-associated tyrosine transposase
D Thimo_0802 transposase K07491 rayT; REP-associated tyrosine transposase
D Thimo_2574 transposase K07491 rayT; REP-associated tyrosine transposase
D Thimo_0168 transposase K07491 rayT; REP-associated tyrosine transposase
D Thimo_0805 transposase K07497 K07497; putative transposase
D Thimo_0912 transposase K07497 K07497; putative transposase
D Thimo_1123 transposase K07497 K07497; putative transposase
D Thimo_0477 transposase K07497 K07497; putative transposase
D Thimo_1421 transposase K07497 K07497; putative transposase
D Thimo_2313 transposase K07497 K07497; putative transposase
D Thimo_0022 transposase K07497 K07497; putative transposase
D Thimo_3530 transposase K07497 K07497; putative transposase
D Thimo_1012 transposase K07497 K07497; putative transposase
D Thimo_1029 transposase K07497 K07497; putative transposase
D Thimo_2028 transposase K07497 K07497; putative transposase
D Thimo_2923 transposase K07497 K07497; putative transposase
D Thimo_0368 transposase K07497 K07497; putative transposase
D Thimo_2197 transposase K07497 K07497; putative transposase
D Thimo_3066 transposase K07497 K07497; putative transposase
D Thimo_2247 transposase K07497 K07497; putative transposase
D Thimo_2252 transposase K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D Thimo_2004 DNA-binding protein, YbaB/EbfC family K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D Thimo_3661 choline/carnitine/betaine transport K03451 TC.BCT; betaine/carnitine transporter, BCCT family
D Thimo_3397 phosphate/sulfate permease K03306 TC.PIT; inorganic phosphate transporter, PiT family
D Thimo_2545 SNF family Na+-dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D Thimo_1470 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D Thimo_2738 putative Na+-dependent transporter K03453 TC.BASS; bile acid:Na+ symporter, BASS family
D Thimo_0946 nucleoside permease K03317 TC.CNT; concentrative nucleoside transporter, CNT family
C 99978 Cell growth
D Thimo_0969 Intracellular septation protein A K06190 ispZ; intracellular septation protein
D Thimo_0995 hypothetical protein K06320 cgeB; spore maturation protein CgeB
D Thimo_3520 hypothetical protein K06415 spoVR; stage V sporulation protein R
D Thimo_3670 membrane-bound metallopeptidase K22719 envC; murein hydrolase activator
C 99993 Cell motility
C 99995 Signaling proteins
D Thimo_3694 uncharacterized protein involved in stress response K05792 terA; tellurite resistance protein TerA
D Thimo_3692 putative stress response protein, TerZ- and CABP1 K05795 terD; tellurium resistance protein TerD
D Thimo_3693 putative stress response protein, TerZ- and CABP1 K05795 terD; tellurium resistance protein TerD
D Thimo_3690 putative stress response protein, TerZ- and CABP1 K05791 terZ; tellurium resistance protein TerZ
D Thimo_1966 universal stress protein UspA-like protein K06149 uspA; universal stress protein A
D Thimo_1119 GTP-binding protein TypA/BipA K06207 typA; GTP-binding protein
D Thimo_0669 phosphate starvation-inducible protein PhoH, predicted ATPase K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D Thimo_2968 PhoH family protein K07175 phoH2; PhoH-like ATPase
D Thimo_3518 putative Ser protein kinase K07180 prkA; serine protein kinase
D Thimo_3663 putative signal-transduction protein containing cAMP-binding and CBS domains K07182 K07182; CBS domain-containing protein
D Thimo_1293 putative signal-transduction protein containing cAMP-binding and CBS domains K07182 K07182; CBS domain-containing protein
D Thimo_3491 SH3 domain protein K07184 ygiM; SH3 domain protein
D Thimo_0954 KaiB domain-containing protein K08481 kaiB; circadian clock protein KaiB
D Thimo_0955 RecA-superfamily ATPase possibly involved in signal transduction K08482 kaiC; circadian clock protein KaiC
D Thimo_1480 hypothetical protein K09767 yajQ; cyclic-di-GMP-binding protein
D Thimo_1273 nitrogen fixation negative regulator NifL K23916 nifL; nitrogen fixation regulatory protein
C 99992 Structural proteins
D Thimo_2445 periplasmic chaperone LolA K03634 lolA; outer membrane lipoprotein carrier protein
D Thimo_3331 surface lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D Thimo_1962 outer membrane protein K06142 hlpA; outer membrane protein
D Thimo_0728 outer membrane protein K06142 hlpA; outer membrane protein
D Thimo_1332 membrane-bound metallopeptidase K06194 nlpD; lipoprotein NlpD
D Thimo_3637 starvation-inducible outer membrane lipoprotein K07285 slp; outer membrane lipoprotein
D Thimo_3638 starvation-inducible outer membrane lipoprotein K07285 slp; outer membrane lipoprotein
D Thimo_2038 uncharacterized protein involved in outer membrane biogenesis K07289 asmA; AsmA protein
D Thimo_1433 RND family efflux transporter, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein
D Thimo_0538 multidrug resistance efflux pump K02005 ABC.CD.TX; HlyD family secretion protein
D Thimo_0116 putative permease K11744 tqsA; AI-2 transport protein TqsA
D Thimo_2064 Inner membrane protein involved in colicin E2 resistance K06143 creD; inner membrane protein
D Thimo_1354 cytochrome c-type biogenesis protein CcmE K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D Thimo_1350 cytochrome c-type biogenesis protein CcmI K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D Thimo_1351 uncharacterized protein involved in biosynthesis of c-type cytochromes K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D Thimo_1891 hypothetical protein K15539 rodZ; cytoskeleton protein RodZ
D Thimo_0855 hypothetical protein K21908 hdeD; membrane protein HdeD
C 99994 Others
D Thimo_2525 phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein
D Thimo_1714 phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein
D Thimo_2051 bacterioferritin-associated ferredoxin K02192 bfd; bacterioferritin-associated ferredoxin
D Thimo_3691 tellurite resistance protein K05793 terB; tellurite resistance protein TerB
D Thimo_0178 uncharacterized protein involved in tolerance to divalent cations K03926 cutA; periplasmic divalent cation tolerance protein
D Thimo_3263 uncharacterized protein affecting Mg2+/Co2+ transport K06195 apaG; ApaG protein
D Thimo_3546 hemerythrin-like metal-binding domain-containing protein K07216 hr; hemerythrin
D Thimo_2708 hemerythrin-like metal-binding domain-containing protein K07216 hr; hemerythrin
D Thimo_1630 hemerythrin-like metal-binding domain-containing protein K07216 hr; hemerythrin
D Thimo_0662 Imelysin K07231 K07231; putative iron-regulated protein
D Thimo_2237 uncharacterized protein involved in response to NO K07234 K07234; uncharacterized protein involved in response to NO
B
B 09194 Poorly characterized
C 99996 General function prediction only
D Thimo_2644 putative membrane protein, required for colicin V production K03558 cvpA; membrane protein required for colicin V production
D Thimo_1369 qaraquat-inducible protein B K06192 pqiB; paraquat-inducible protein B
D Thimo_1382 putative cation transport regulator K06197 chaB; cation transport regulator
D Thimo_2482 putative periplasmic or secreted lipoprotein K04065 osmY; hyperosmotically inducible periplasmic protein
D Thimo_0677 helicase family protein with metal-binding cysteine cluster K06877 K06877; DEAD/DEAH box helicase domain-containing protein
D Thimo_1870 putative esterase of the alpha-beta hydrolase superfamily K07001 K07001; NTE family protein
D Thimo_1032 Iron-sulfur cluster assembly accessory protein K15724 erpA; iron-sulfur cluster insertion protein
D Thimo_0074 Iron-sulfur cluster assembly accessory protein K15724 erpA; iron-sulfur cluster insertion protein
D Thimo_2216 FeS assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D Thimo_2214 FeS assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D Thimo_1559 putative membrane protein K07058 K07058; membrane protein
D Thimo_0177 protein affecting phage T7 exclusion by the F plasmid K07113 fxsA; UPF0716 protein FxsA
D Thimo_3300 SufE protein probably involved in Fe-S center assembly K02426 sufE; cysteine desulfuration protein SufE
D Thimo_2096 uncharacterized protein involved in purine metabolism K07153 hflD; high frequency lysogenization protein
D Thimo_3302 hypothetical protein K03744 lemA; LemA protein
D Thimo_2734 hypothetical protein K03744 lemA; LemA protein
D Thimo_1250 hypothetical protein K03747 smg; Smg protein
D Thimo_2124 hypothetical protein K05805 creA; CreA protein
D Thimo_0700 hypothetical protein K02742 sprT; SprT protein
D Thimo_2645 hypothetical protein K03749 dedD; DedD protein
D Thimo_3291 hypothetical protein K03112 damX; DamX protein
D Thimo_2917 uncharacterized membrane protein K03748 sanA; SanA protein
D Thimo_1371 integral membrane protein, PqiA family K03808 pqiA; paraquat-inducible protein A
D Thimo_1224 putative membrane protein K00389 yidH; putative membrane protein
D Thimo_2141 cupin domain-containing protein K11312 K11312; cupin 2 domain-containing protein
D Thimo_1202 putative membrane protein K13256 psiE; protein PsiE
C 99997 Function unknown
D Thimo_1472 ankyrin repeat-containing protein K06867 K06867; uncharacterized protein
D Thimo_0222 ankyrin repeat-containing protein K06867 K06867; uncharacterized protein
D Thimo_2126 ankyrin repeat-containing protein K06867 K06867; uncharacterized protein
D Thimo_0827 arylsulfatase regulator (Fe-S oxidoreductase) K06871 K06871; uncharacterized protein
D Thimo_2735 beta-propeller domain-containing protein, methanol dehydrogenase K06872 K06872; uncharacterized protein
D Thimo_1053 thioredoxin domain protein K06888 K06888; uncharacterized protein
D Thimo_0792 phage baseplate assembly protein W K06903 W; Bacteriophage baseplate protein W
D Thimo_0779 phage tail sheath protein FI K06907 FI; Bacteriophage tail sheath protein
D Thimo_2009 putative ATPase (AAA+ superfamily) K06923 K06923; uncharacterized protein
D Thimo_0880 putative GTPase K06946 K06946; uncharacterized protein
D Thimo_0939 putative NAD/FAD-binding protein K06954 K06954; uncharacterized protein
D Thimo_2982 putative NAD/FAD-binding protein K06954 K06954; uncharacterized protein
D Thimo_1136 putative deacylase K06987 K06987; uncharacterized protein
D Thimo_2433 putative enzyme of the cupin superfamily K06995 K06995; uncharacterized protein
D Thimo_1099 putative hydrolase of the alpha/beta-hydrolase fold protein K07019 K07019; uncharacterized protein
D Thimo_2459 hypothetical protein K07028 K07028; uncharacterized protein
D Thimo_2722 putative toxin-antitoxin system toxin component, PIN family K07063 K07063; uncharacterized protein
D Thimo_0038 hypothetical protein K07064 K07064; uncharacterized protein
D Thimo_1988 putative nucleotidyltransferase K07075 K07075; uncharacterized protein
D Thimo_2725 putative nucleotidyltransferase K07075 K07075; uncharacterized protein
D Thimo_3211 putative nucleotidyltransferase K07075 K07075; uncharacterized protein
D Thimo_1335 putative nucleotidyltransferase K07075 K07075; uncharacterized protein
D Thimo_1815 putative permease K07089 K07089; uncharacterized protein
D Thimo_0378 putative permease K07090 K07090; uncharacterized protein
D Thimo_0566 putative permease K07090 K07090; uncharacterized protein
D Thimo_1906 putative phosphatase K07093 K07093; uncharacterized protein
D Thimo_1743 phosphoesterase, MJ0936 family K07095 K07095; uncharacterized protein
D Thimo_1260 putative phosphohydrolase K07098 K07098; uncharacterized protein
D Thimo_1230 Sel1 repeat protein K07126 K07126; uncharacterized protein
D Thimo_0821 Sel1 repeat protein K07126 K07126; uncharacterized protein
D Thimo_3744 putative ATPase (AAA+ superfamily) K07133 K07133; uncharacterized protein
D Thimo_1128 radical SAM protein, TIGR01212 family K07139 K07139; uncharacterized protein
D Thimo_0058 peptidase S16, lon domain protein K07157 K07157; uncharacterized protein
D Thimo_0001 conserved hypothetical protein YidD K08998 K08998; uncharacterized protein
D Thimo_3178 hypothetical protein K09004 K09004; uncharacterized protein
D Thimo_3209 hypothetical protein K09005 K09005; uncharacterized protein
D Thimo_0554 hypothetical protein K09117 K09117; uncharacterized protein
D Thimo_1573 hypothetical protein K09118 K09118; uncharacterized protein
D Thimo_0747 TIGR00251 family protein K09131 K09131; uncharacterized protein
D Thimo_3415 hypothetical protein, C-terminal domain of eukaryotic chaperone SACSIN like protein K09132 K09132; uncharacterized protein
D Thimo_2346 hypothetical protein K09137 K09137; uncharacterized protein
D Thimo_2302 hypothetical protein K09160 K09160; uncharacterized protein
D Thimo_1390 hypothetical protein K09700 K09700; uncharacterized protein
D Thimo_0938 hypothetical protein K09701 K09701; uncharacterized protein
D Thimo_2135 hypothetical protein K09768 K09768; uncharacterized protein
D Thimo_0968 hypothetical protein K09780 K09780; uncharacterized protein
D Thimo_1929 hypothetical protein K09781 K09781; uncharacterized protein
D Thimo_3519 hypothetical protein K09786 K09786; uncharacterized protein
D Thimo_3380 hypothetical protein K09791 K09791; uncharacterized protein
D Thimo_0745 hypothetical protein K09792 K09792; uncharacterized protein
D Thimo_1963 hypothetical protein K09794 K09794; uncharacterized protein
D Thimo_1266 hypothetical protein K09801 K09801; uncharacterized protein
D Thimo_2543 hypothetical protein K09801 K09801; uncharacterized protein
D Thimo_0798 hypothetical protein K09803 K09803; uncharacterized protein
D Thimo_3225 hypothetical protein K09803 K09803; uncharacterized protein
D Thimo_2946 hypothetical protein K09822 K09822; uncharacterized protein
D Thimo_2138 hypothetical protein K09857 K09857; uncharacterized protein
D Thimo_3605 hypothetical protein K09862 K09862; uncharacterized protein
D Thimo_1194 hypothetical protein K09895 K09895; uncharacterized protein
D Thimo_1961 hypothetical protein K09912 K09912; uncharacterized protein
D Thimo_2916 hypothetical protein K09915 K09915; uncharacterized protein
D Thimo_2448 hypothetical protein K09919 K09919; uncharacterized protein
D Thimo_0846 hypothetical protein K09920 K09920; uncharacterized protein
D Thimo_3275 hypothetical protein K09921 K09921; uncharacterized protein
D Thimo_0192 hypothetical protein K09928 K09928; uncharacterized protein
D Thimo_0863 hypothetical protein K09931 K09931; uncharacterized protein
D Thimo_2388 hypothetical protein K09937 K09937; uncharacterized protein
D Thimo_2495 hypothetical protein K09950 K09950; uncharacterized protein
D Thimo_3482 hypothetical protein K09978 K09978; uncharacterized protein
D Thimo_0678 hypothetical protein K07502 yprB; uncharacterized protein
D Thimo_0656 putative periplasmic lipoprotein K07338 K07338; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 30, 2024