+F Repair protein KO
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DNA Repair and Recombination Proteins - Candidate division TM6 bacterium GW2011_GWF2_28_16
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D US01_C0001G0622 methylated DNA-protein cysteine methyltransferase, methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D US01_C0001G0340 NUDIX hydrolase, 7,8-dihydro-8-oxoguanine triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D US01_C0001G0174 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D US01_C0001G0346 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D US01_C0001G0352 RNA pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D US01_C0001G0649 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D US01_C0001G0829 deoxyuridine 5'-triphosphate nucleotidohydrolase, dUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D US01_C0001G0622 methylated DNA-protein cysteine methyltransferase, methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E US01_C0001G0184 phage DNA polymerase-like protein, DNA polymerase bacteriophage-type K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E US01_C0001G0590 formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase, formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D AP endonucleases
E US01_C0001G0464 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E US01_C0001G0453 recJ; single-stranded-DNA-specific exonuclease, single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E US01_C0001G0699 excinuclease ABC subunit A, excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E US01_C0001G0697 uvrB; excinuclease ABC subunit B, excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E US01_C0001G0701 excinuclease ABC subunit C, excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E US01_C0001G0302 uvrD; DNA-dependent ATPase I and helicase II, DNA helicase II / ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E US01_C0001G0726 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F US01_C0001G0199 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F US01_C0001G0200 DNA-directed RNA polymerase subunit beta', DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F US01_C0001G0231 DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
E US01_C0001G0585 polymerase III subunit alpha, DNA polymerase III subunit alpha protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E US01_C0001G0032 polymerase III subunit beta, DNA polymerase III subunit beta protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E US01_C0001G0772 polymerase III subunit delta', DNA polymerase III subunit delta' protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E US01_C0001G0429 polymerase III subunit gamma and tau, DNA polymerase III subunit gamma/tau protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
D Other MMR factors
E US01_C0001G0302 uvrD; DNA-dependent ATPase I and helicase II, DNA helicase II / ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E US01_C0001G0726 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E US01_C0001G0806 single-strand binding protein, single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E US01_C0001G0296 recA; recombinase A, recombination protein RecA K03553 recA; recombination protein RecA
E US01_C0001G0532 ruvA; Holliday junction ATP-dependent DNA helicase holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E US01_C0001G0533 ruvB; Holliday junction ATP-dependent DNA helicase holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E US01_C0001G0531 crossover junction endodeoxyribonuclease RuvC, crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D RecFOR pathway proteins
E US01_C0001G0296 recA; recombinase A, recombination protein RecA K03553 recA; recombination protein RecA
E US01_C0001G0012 repair protein RadA, DNA repair protein RadA/Sms protein K04485 radA; DNA repair protein RadA/Sms
E US01_C0001G0055 recF; recombination protein F, DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
E US01_C0001G0744 RecG, ATP-dependent DNA helicase RecG, ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E US01_C0001G0453 recJ; single-stranded-DNA-specific exonuclease, single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E US01_C0001G0545 repair protein RecO protein K03584 recO; DNA repair protein RecO (recombination protein O)
E US01_C0001G0826 recombination protein RecR, recombination protein RecR K06187 recR; recombination protein RecR
E US01_C0001G0532 ruvA; Holliday junction ATP-dependent DNA helicase holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E US01_C0001G0533 ruvB; Holliday junction ATP-dependent DNA helicase holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E US01_C0001G0531 crossover junction endodeoxyribonuclease RuvC, crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F US01_C0001G0775 gyrase subunit A, DNA gyrase subunit A protein K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F US01_C0001G0773 gyrase subunit B, DNA gyrase subunit B protein K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F US01_C0001G0842 topoisomerase I, DNA topoisomerase I protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F US01_C0001G0235 bacterial nucleoid protein Hbs K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F US01_C0001G0453 recJ; single-stranded-DNA-specific exonuclease, single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F US01_C0001G0545 repair protein RecO protein K03584 recO; DNA repair protein RecO (recombination protein O)
F US01_C0001G0826 recombination protein RecR, recombination protein RecR K06187 recR; recombination protein RecR
E Facilitator
E Supressor
F US01_C0001G0668 recQ; ATP-dependent DNA helicase RecQ, ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F US01_C0001G0699 excinuclease ABC subunit A, excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F US01_C0001G0697 uvrB; excinuclease ABC subunit B, excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D US01_C0001G0296 recA; recombinase A, recombination protein RecA K03553 recA; recombination protein RecA
D US01_C0001G0615 LexA family transcriptional repressor, repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D US01_C0001G0806 single-strand binding protein, single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D US01_C0001G0340 NUDIX hydrolase, 7,8-dihydro-8-oxoguanine triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D US01_C0001G0174 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D US01_C0001G0346 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D US01_C0001G0352 RNA pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D US01_C0001G0649 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D US01_C0001G0829 deoxyuridine 5'-triphosphate nucleotidohydrolase, dUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024