+F Repair protein KO #

  DNA Repair and Recombination Proteins - Candidate division TM6 bacterium GW2011_GWF2_28_16

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D US01_C0001G0622 methylated DNA-protein cysteine methyltransferase, methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D US01_C0001G0340 NUDIX hydrolase, 7,8-dihydro-8-oxoguanine triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D US01_C0001G0174 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D US01_C0001G0346 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D US01_C0001G0352 RNA pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D US01_C0001G0649 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D US01_C0001G0829 deoxyuridine 5'-triphosphate nucleotidohydrolase, dUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D US01_C0001G0622 methylated DNA-protein cysteine methyltransferase, methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E US01_C0001G0184 phage DNA polymerase-like protein, DNA polymerase bacteriophage-type K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E US01_C0001G0590 formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase, formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D AP endonucleases E US01_C0001G0464 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E US01_C0001G0453 recJ; single-stranded-DNA-specific exonuclease, single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E US01_C0001G0699 excinuclease ABC subunit A, excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E US01_C0001G0697 uvrB; excinuclease ABC subunit B, excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E US01_C0001G0701 excinuclease ABC subunit C, excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E US01_C0001G0302 uvrD; DNA-dependent ATPase I and helicase II, DNA helicase II / ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E US01_C0001G0726 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F US01_C0001G0199 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F US01_C0001G0200 DNA-directed RNA polymerase subunit beta', DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F US01_C0001G0231 DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme E US01_C0001G0585 polymerase III subunit alpha, DNA polymerase III subunit alpha protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E US01_C0001G0032 polymerase III subunit beta, DNA polymerase III subunit beta protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E US01_C0001G0772 polymerase III subunit delta', DNA polymerase III subunit delta' protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E US01_C0001G0429 polymerase III subunit gamma and tau, DNA polymerase III subunit gamma/tau protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase D Other MMR factors E US01_C0001G0302 uvrD; DNA-dependent ATPase I and helicase II, DNA helicase II / ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E US01_C0001G0726 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E US01_C0001G0806 single-strand binding protein, single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E US01_C0001G0296 recA; recombinase A, recombination protein RecA K03553 recA; recombination protein RecA E US01_C0001G0532 ruvA; Holliday junction ATP-dependent DNA helicase holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E US01_C0001G0533 ruvB; Holliday junction ATP-dependent DNA helicase holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E US01_C0001G0531 crossover junction endodeoxyribonuclease RuvC, crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D RecFOR pathway proteins E US01_C0001G0296 recA; recombinase A, recombination protein RecA K03553 recA; recombination protein RecA E US01_C0001G0012 repair protein RadA, DNA repair protein RadA/Sms protein K04485 radA; DNA repair protein RadA/Sms E US01_C0001G0055 recF; recombination protein F, DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E US01_C0001G0744 RecG, ATP-dependent DNA helicase RecG, ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E US01_C0001G0453 recJ; single-stranded-DNA-specific exonuclease, single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E US01_C0001G0545 repair protein RecO protein K03584 recO; DNA repair protein RecO (recombination protein O) E US01_C0001G0826 recombination protein RecR, recombination protein RecR K06187 recR; recombination protein RecR E US01_C0001G0532 ruvA; Holliday junction ATP-dependent DNA helicase holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E US01_C0001G0533 ruvB; Holliday junction ATP-dependent DNA helicase holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E US01_C0001G0531 crossover junction endodeoxyribonuclease RuvC, crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F US01_C0001G0775 gyrase subunit A, DNA gyrase subunit A protein K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F US01_C0001G0773 gyrase subunit B, DNA gyrase subunit B protein K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F US01_C0001G0842 topoisomerase I, DNA topoisomerase I protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F US01_C0001G0235 bacterial nucleoid protein Hbs K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F US01_C0001G0453 recJ; single-stranded-DNA-specific exonuclease, single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F US01_C0001G0545 repair protein RecO protein K03584 recO; DNA repair protein RecO (recombination protein O) F US01_C0001G0826 recombination protein RecR, recombination protein RecR K06187 recR; recombination protein RecR E Facilitator E Supressor F US01_C0001G0668 recQ; ATP-dependent DNA helicase RecQ, ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F US01_C0001G0699 excinuclease ABC subunit A, excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F US01_C0001G0697 uvrB; excinuclease ABC subunit B, excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors D US01_C0001G0296 recA; recombinase A, recombination protein RecA K03553 recA; recombination protein RecA D US01_C0001G0615 LexA family transcriptional repressor, repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D US01_C0001G0806 single-strand binding protein, single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D US01_C0001G0340 NUDIX hydrolase, 7,8-dihydro-8-oxoguanine triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D US01_C0001G0174 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D US01_C0001G0346 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D US01_C0001G0352 RNA pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D US01_C0001G0649 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D US01_C0001G0829 deoxyuridine 5'-triphosphate nucleotidohydrolase, dUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024