+F Repair protein KO #

  DNA Repair and Recombination Proteins - Thioalkalivibrio nitratireducens

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D TVNIR_3420 Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D TVNIR_2392 phr_[H]; Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E TVNIR_3589 mutY_[H]; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E TVNIR_2386 nth_[H]; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D TVNIR_2593 mutT_[H]; Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) / Thiamin-phosphate pyrophosphorylase-like protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TVNIR_2817 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TVNIR_3286 nudG_[H]; Putative 7,8-Dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TVNIR_0393 dut_[H]; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D TVNIR_3420 Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D TVNIR_2392 phr_[H]; Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E TVNIR_1377 Uracil-DNA glycosylase, family 5 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E TVNIR_3219 Uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E TVNIR_1123 yfjP_[H]; HhH-GPD base excision DNA repair family protein; Probable 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E TVNIR_3589 mutY_[H]; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E TVNIR_0101 mutM_[H]; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E TVNIR_2386 nth_[H]; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E TVNIR_3820 xthA_[H]; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E TVNIR_3759 exoA_[H]; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E TVNIR_2722 recJ_[H]; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E TVNIR_1421 ligA_[H]; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E TVNIR_3740 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E TVNIR_2548 uvrA_[H]; Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E TVNIR_1610 uvrB_[H]; Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E TVNIR_1378 uvrC_[H]; Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E TVNIR_3785 uvrD_[H]; ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TVNIR_3740 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E TVNIR_1421 ligA_[H]; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F TVNIR_2581 rpoB_[H]; DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F TVNIR_2580 rpoC_[H]; DNA-directed RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F TVNIR_2550 rpoA_[H]; DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F TVNIR_3699 rpoZ_[H]; DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F TVNIR_1824 mfd_[H]; Transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E TVNIR_1451 mutS_[H]; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E TVNIR_2779 mutL_[H]; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E TVNIR_3088 xseA_[H]; Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E TVNIR_3433 exodeoxyribonuclease VII, small subunit - like protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E TVNIR_1893 dnaE_[H]; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E TVNIR_3812 dnaN_[H]; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E TVNIR_3203 holC_[H]; DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E TVNIR_2522 holA_[H]; DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E TVNIR_1588 holB_[H]; DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E TVNIR_3099 DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E TVNIR_2723 DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E TVNIR_0809 dnaX_[H]; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E TVNIR_1421 ligA_[H]; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E TVNIR_3785 uvrD_[H]; ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TVNIR_2545 ssb_[H]; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E TVNIR_2102 Putative single stranded DNA-binding protein of prophage K03111 ssb; single-strand DNA-binding protein E TVNIR_0042 phage DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E TVNIR_2442 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E TVNIR_1736 phage DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E TVNIR_0137 recB_[H]; Exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E TVNIR_0136 recC_[H]; Exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E TVNIR_0138 recD_[H]; Exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E TVNIR_1453 recA_[H]; RecA protein K03553 recA; recombination protein RecA E TVNIR_3375 ruvA_[H]; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E TVNIR_3374 ruvB_[H]; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E TVNIR_3376 ruvC_[H]; Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E TVNIR_3553 priA_[H]; Helicase PriA essential for oriC/DnaA-independent DNA replication K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E TVNIR_1453 recA_[H]; RecA protein K03553 recA; recombination protein RecA E TVNIR_3428 radA_[H]; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E TVNIR_3813 recF_[H]; DNA recombination and repair protein RecF K03629 recF; DNA replication and repair protein RecF E TVNIR_3702 recG_[H]; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E TVNIR_1856 ATP-dependent DNA helicase-like protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E TVNIR_1854 ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E TVNIR_2722 recJ_[H]; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E TVNIR_0830 recO_[H]; DNA recombination and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E TVNIR_0811 recR_[H]; Recombination protein RecR K06187 recR; recombination protein RecR E TVNIR_3155 recN_[H]; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E TVNIR_1789 rdgC_[H]; DNA recombination-dependent growth factor C K03554 rdgC; recombination associated protein RdgC E TVNIR_3375 ruvA_[H]; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E TVNIR_3374 ruvB_[H]; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E TVNIR_3376 ruvC_[H]; Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E TVNIR_2451 ygbT_[C]; CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 E TVNIR_1486 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E TVNIR_1178 yjgR_[H]; ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F TVNIR_1814 gyrA_[H]; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F TVNIR_3816 gyrB_[H]; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F TVNIR_0413 topA_[H]; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F TVNIR_2769 hupB_[H]; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F TVNIR_2722 recJ_[H]; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F TVNIR_0830 recO_[H]; DNA recombination and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F TVNIR_0811 recR_[H]; Recombination protein RecR K06187 recR; recombination protein RecR F TVNIR_1421 ligA_[H]; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F TVNIR_0469 fis_[C]; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F TVNIR_2214 ihfA_[H]; Integration host factor alpha subunit K04764 ihfA; integration host factor subunit alpha F TVNIR_1805 ihfB_[H]; Integration host factor beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F TVNIR_3210 recQ_[H]; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F TVNIR_2548 uvrA_[H]; Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F TVNIR_1610 uvrB_[H]; Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D TVNIR_2228 dinB_[H]; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D TVNIR_2715 ymfK_[C]; putative phage repressor K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D TVNIR_1453 recA_[H]; RecA protein K03553 recA; recombination protein RecA D TVNIR_1878 lexA_[H]; SOS-response repressor and protease LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D TVNIR_3155 recN_[H]; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D TVNIR_1879 recA_[C]; SOS cell division inhibitor SulA K14160 imuA; protein ImuA D TVNIR_1880 imuB_[H]; DNA polymerase IV-like protein ImuB K14161 imuB; protein ImuB D TVNIR_2937 dnaE2_[H]; DNA polymerase III alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D TVNIR_2545 ssb_[H]; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D TVNIR_2102 Putative single stranded DNA-binding protein of prophage K03111 ssb; single-strand DNA-binding protein D TVNIR_1454 recX_[H]; Regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D TVNIR_0464 rep_[H]; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D TVNIR_2965 yoaA_[H]; DinG family ATP-dependent helicase YoaA K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D TVNIR_2593 mutT_[H]; Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) / Thiamin-phosphate pyrophosphorylase-like protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TVNIR_2817 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TVNIR_3286 nudG_[H]; Putative 7,8-Dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TVNIR_0393 dut_[H]; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D TVNIR_2334 nrdA_[H]; Ribonucleotide reductase of class Ia (aerobic), alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TVNIR_3568 nrdEB_[H]; Ribonucleotide reductase of class II (coenzyme B12-dependent) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TVNIR_2333 nrdB_[H]; Ribonucleotide reductase of class Ia (aerobic), beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024