+E Ribosome biogenesis KO
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Ribosome Biogenesis - Thalassolituus oleivorans MIL-1
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D TOL_0921 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
D TOL_2109 putative RIO1/ZK632.3/MJ0444 family protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D TOL_3032 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C TOL_0922 GTP-binding protein Era K03595 era; GTPase
C TOL_2885 GTP-binding protein, GTP1/Obg family protein K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C TOL_0478 C4-type zinc finger DksA/TraR family protein K06204 dksA; RNA polymerase-binding transcription factor
C TOL_2996 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C TOL_3407 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
C TOL_2717 transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C TOL_3147 transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
C TOL_3462 transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D TOL_1381 pseudouridine synthase Rsu K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D TOL_1419 pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D TOL_0598 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D TOL_0122 sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D TOL_0885 tRNA and rRNA cytosine-C5-methylase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D TOL_0658 hypothetical protein K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D TOL_0134 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D TOL_3222 hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D TOL_3706 GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D TOL_0794 S-adenosyl-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D TOL_0843 uroporphyrin-III C/tetrapyrrole methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D TOL_0938 hypothetical protein K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
C 23S rRNA modification factors
D TOL_1346 S-adenosylmethionine-dependent methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D TOL_3199 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D TOL_2725 23S rRNA methylase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D TOL_1234 hypothetical protein K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D TOL_1815 hypothetical protein K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D TOL_2910 hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D TOL_3606 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D TOL_1315 hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D TOL_1198 23S rRNA m(2)G2445 methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D TOL_0949 hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D TOL_0928 hypothetical protein K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D TOL_1819 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D TOL_2381 23S rRNA pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D TOL_2297 hypothetical protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D TOL_1641 ribosomal large subunit pseudouridine synthase C (pseudouridylate synthase) (uracil hydrolyase) K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D TOL_2863 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D TOL_3164 hypothetical protein K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D TOL_1799 Ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D TOL_2402 23S rRNA pseudouridine synthase F K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
B ribosomal protein modification factors
C TOL_0330 rimI gene product K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C TOL_0742 alpha-L-glutamate ligase K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C TOL_2462 30S ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C TOL_3275 hypothetical protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C TOL_2627 16S rRNA-processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C TOL_1985 MiaB-like tRNA modifying enzyme YliG K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C TOL_2851 50S ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C TOL_2318 HemK family modification methylase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C TOL_1899 hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C TOL_0921 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C TOL_1640 hypothetical protein K08300 rne; ribonuclease E [EC:3.1.26.12]
C TOL_3109 Ribonucleases G and E K08301 rng; ribonuclease G [EC:3.1.26.-]
C TOL_0267 hypothetical protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C TOL_1255 DEAD/DEAH box helicase-like protein K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C TOL_2681 DEAD/DEAH box helicase-like protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C TOL_2450 probable ATP-dependent RNA helicase K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
B GTPases
C TOL_0922 GTP-binding protein Era K03595 era; GTPase
C TOL_3033 ribosome-associated GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C TOL_0955 predicted GTPase K03977 engA; GTPase
C TOL_2885 GTP-binding protein, GTP1/Obg family protein K03979 obgE; GTPase [EC:3.6.5.-]
C TOL_2023 GTP-binding protein K14540 rbgA; ribosome biogenesis GTPase A
C TOL_3024 probable GTP-binding protein K03665 hflX; GTPase
B Other maturation factors
C TOL_0116 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C TOL_0175 spoT gene product K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C TOL_2715 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C TOL_2718 ribosome maturation protein RimP K09748 rimP; ribosome maturation factor RimP
C TOL_2909 uncharacterized plant Iojap protein K09710 ybeB; ribosome-associated protein
C TOL_0817 uncharacterized UPF0054 family protein K07042 ybeY; probable rRNA maturation factor
C TOL_2726 hypothetical protein K07574 yhbY; RNA-binding protein
C TOL_3106 hypothetical protein K09889 yjgA; ribosome-associated protein
C TOL_1197 rmf; ribosome modulation factor K03812 rmf; ribosome modulation factor
C TOL_0849 raiA; 30S ribosomal subunit interface binding protein K05808 hpf; ribosome hibernation promoting factor
C TOL_3101 hpf; ribosome hibernation promoting factor HPF; stabilizes 70S dimers (100S) K05808 hpf; ribosome hibernation promoting factor
C TOL_0826 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
C TOL_1644 hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 2, 2025