+D GENES KO #

  KEGG Orthology (KO) - Treponema pallidum subsp. pallidum Nichols

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A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:tpa00010] D TP_0505 hexokinase (hxk) K00844 HK; hexokinase [EC:2.7.1.1] D TP_0475 glucose-6-phosphate isomerase (gpi) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D TP_0108 pyrophosphate--fructose 6-phosphate 1-phosphotransferase (pfk) K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D TP_0542 pyrophosphate--fructose 6-phosphate 1-phosphotransferase, beta subunit K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90] D TP_0662 fructose-bisphosphate aldolase (cbbA) K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D TP_0537 triosephosphate isomerase (tpi) K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D TP_0538 phosphoglycerate kinase (pgk) K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D TP_0168 phosphoglycerate mutase (pgm) K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D TP_0817 enolase (eno) K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D TP_0746 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D TP_0939 pyruvate oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D TP_0642 phosphomannomutase (manB) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D TP_0122 phosphoenolpyruvate carboxykinase (pckA) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] C 00020 Citrate cycle (TCA cycle) [PATH:tpa00020] D TP_0122 phosphoenolpyruvate carboxykinase (pckA) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D TP_0939 pyruvate oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] C 00030 Pentose phosphate pathway [PATH:tpa00030] D TP_0475 glucose-6-phosphate isomerase (gpi) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D TP_0478 glucose-6-phosphate 1-dehydrogenase (zwf) K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D TP_0477 glucose-6-phosphate 1-dehydrogenase, putative K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31] D TP_0331 phosphogluconate dehydrogenase (gnd) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D TP_0945 ribulose-phosphate 3-epimerase (cfxE) K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D TP_0560 transketolase A (tktA) K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D TP_0616 ribose 5-phosphate isomerase (rpiA) K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D TP_0264 deoxyribose-phosphate aldolase (deoC) K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D TP_0642 phosphomannomutase (manB) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D TP_0294 phosphoribosyl pyrophosphate synthetase (prs) K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D TP_0568 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxyphosphogluconate aldolase (eda) K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D TP_0662 fructose-bisphosphate aldolase (cbbA) K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D TP_0108 pyrophosphate--fructose 6-phosphate 1-phosphotransferase (pfk) K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D TP_0542 pyrophosphate--fructose 6-phosphate 1-phosphotransferase, beta subunit K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90] C 00040 Pentose and glucuronate interconversions D TP_0945 ribulose-phosphate 3-epimerase (cfxE) K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] C 00051 Fructose and mannose metabolism [PATH:tpa00051] D TP_0505 hexokinase (hxk) K00844 HK; hexokinase [EC:2.7.1.1] D TP_0108 pyrophosphate--fructose 6-phosphate 1-phosphotransferase (pfk) K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D TP_0542 pyrophosphate--fructose 6-phosphate 1-phosphotransferase, beta subunit K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90] D TP_0662 fructose-bisphosphate aldolase (cbbA) K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D TP_0537 triosephosphate isomerase (tpi) K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 00052 Galactose metabolism [PATH:tpa00052] D TP_0418 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D TP_0642 phosphomannomutase (manB) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D TP_0505 hexokinase (hxk) K00844 HK; hexokinase [EC:2.7.1.1] D TP_0108 pyrophosphate--fructose 6-phosphate 1-phosphotransferase (pfk) K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C 00053 Ascorbate and aldarate metabolism C 00500 Starch and sucrose metabolism [PATH:tpa00500] D TP_0642 phosphomannomutase (manB) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D TP_0505 hexokinase (hxk) K00844 HK; hexokinase [EC:2.7.1.1] D TP_0475 glucose-6-phosphate isomerase (gpi) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:tpa00520] D TP_0505 hexokinase (hxk) K00844 HK; hexokinase [EC:2.7.1.1] D TP_0861 glucosamine-fructose-6-phosphate aminotransferase (glmS) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D TP_0029 UDP-N-acetylglucosamine 1-carboxyvinyltransferase (murA) K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D TP_0090 UDP-N-acetylmuramate dehydrogenase (murB) K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D TP_0642 phosphomannomutase (manB) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D TP_0418 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D TP_0475 glucose-6-phosphate isomerase (gpi) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] C 00620 Pyruvate metabolism [PATH:tpa00620] D TP_0939 pyruvate oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D TP_0476 acetate kinase (ack) K00925 ackA; acetate kinase [EC:2.7.2.1] D TP_0094 phosphate acetyltransferase (pta) K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D TP_0037 D-specific D-2-hydroxyacid dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28] D TP_0056 oxaloacetate decarboxylase, subunit alpha (oadA) K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D TP_0057 oxaloacetate decarboxylase, subunit beta (oadB) K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D TP_0055 predicted coding region TP0055 K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma D TP_0122 phosphoenolpyruvate carboxykinase (pckA) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D TP_0746 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:tpa00630] D TP_0554 phosphoglycolate phosphatase (gph-2) K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D TP_0329 serine hydroxymethyltransferase (glyA) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D TP_0568 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxyphosphogluconate aldolase (eda) K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] C 00640 Propanoate metabolism [PATH:tpa00640] D TP_0476 acetate kinase (ack) K00925 ackA; acetate kinase [EC:2.7.2.1] D TP_0094 phosphate acetyltransferase (pta) K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] C 00650 Butanoate metabolism [PATH:tpa00650] D TP_0057 oxaloacetate decarboxylase, subunit beta (oadB) K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D TP_0939 pyruvate oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] C 00660 C5-Branched dibasic acid metabolism C 00562 Inositol phosphate metabolism D TP_0537 triosephosphate isomerase (tpi) K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:tpa00190] D TP_0426 V-type ATPase, subunit A (atpA-1) K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1] D TP_0529 V-type ATPase, subunit A (atpA-2) K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1] D TP_0427 V-type ATPase, subunit B (atpB-1) K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B D TP_0528 V-type ATPase, subunit B (atpB-2) K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B D TP_0428 V-type ATPase, subunit D (atpD-1) K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D D TP_0527 V-type ATPase, subunit D (atpD-2) K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D D TP_0424 V-type ATPase, subunit E, putative K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E D TP_0530 V-type ATPase, subunit E, putative K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E D TP_0429 V-type ATPase, subunit I (atpI-1) K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I D TP_0533 V-type ATPase, subunit I (atpI-2) K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I D TP_0430 V-type ATPase, subunit K (atpK-1) K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation by Calvin cycle [PATH:tpa00710] D TP_0538 phosphoglycerate kinase (pgk) K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D TP_0662 fructose-bisphosphate aldolase (cbbA) K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D TP_0560 transketolase A (tktA) K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D TP_0616 ribose 5-phosphate isomerase (rpiA) K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D TP_0537 triosephosphate isomerase (tpi) K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D TP_0945 ribulose-phosphate 3-epimerase (cfxE) K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D TP_0746 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] C 00720 Other carbon fixation pathways [PATH:tpa00720] D TP_0939 pyruvate oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D TP_0746 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D TP_0732 methylenetetrahydrofolate dehydrogenase (folD) K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D TP_0094 phosphate acetyltransferase (pta) K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D TP_0476 acetate kinase (ack) K00925 ackA; acetate kinase [EC:2.7.2.1] C 00680 Methane metabolism [PATH:tpa00680] D TP_0329 serine hydroxymethyltransferase (glyA) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D TP_0817 enolase (eno) K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D TP_0662 fructose-bisphosphate aldolase (cbbA) K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D TP_0108 pyrophosphate--fructose 6-phosphate 1-phosphotransferase (pfk) K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D TP_0476 acetate kinase (ack) K00925 ackA; acetate kinase [EC:2.7.2.1] D TP_0094 phosphate acetyltransferase (pta) K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D TP_0168 phosphoglycerate mutase (pgm) K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] C 00910 Nitrogen metabolism D TP_0735 glutamate synthase (gltA) K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] C 00920 Sulfur metabolism D TP_0436 conserved hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:tpa00061] D TP_0808 acyl carrier protein (acpP) K02078 acpP; acyl carrier protein D TP_0145 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation D TP_0145 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00073 Cutin, suberine and wax biosynthesis C 00074 Mycolic acid biosynthesis D TP_0828 holo-acyl-carrier protein synthase (acpS) K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D TP_0808 acyl carrier protein (acpP) K02078 acpP; acyl carrier protein C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism D TP_0361 lysophosphatidic acid acyltransferase, putative K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 00564 Glycerophospholipid metabolism [PATH:tpa00564] D TP_1009 glycerol-3-phosphate dehydrogenase (gpsA) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D TP_0361 lysophosphatidic acid acyltransferase, putative K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D TP_0257 glycerophosphoryldiester phosphodiesterase (glpQ) K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D TP_0602 phosphatidate cytidylyltransferase (cdsA) K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D TP_0730 conserved hypothetical protein K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D TP_0256 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (pgsA) K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:tpa00230] D TP_0642 phosphomannomutase (manB) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D TP_0294 phosphoribosyl pyrophosphate synthetase (prs) K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D TP_1039 adenine phosphoribosyltransferase (apt) K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D TP_0104 5'-nucleotidase (ushA) K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D TP_0419 survival protein, putative K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D TP_0734 purine nucleoside phosphorylase (deoD) K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D TP_1010 nucleoside-diphosphate kinase (ndk) K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D TP_0438 conserved hypothetical protein K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D TP_1008 ribonucleoside-diphosphate reductase, subunit alpha (nrdA) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TP_0053 ribonucleoside-diphosphate reductase, subunit beta (nrdB) K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D TP_0485 adenylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D TP_0595 adenylate kinase (adk) K00939 adk; adenylate kinase [EC:2.7.4.3] C 00240 Pyrimidine metabolism [PATH:tpa00240] D TP_0099 uridylate kinase (smbA) K09903 pyrH; uridylate kinase [EC:2.7.4.22] D TP_1010 nucleoside-diphosphate kinase (ndk) K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D TP_0305 CTP synthase (pyrG) K01937 pyrG; CTP synthase [EC:6.3.4.2] D TP_0342 cytidylate kinase (cmk) K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D TP_0104 5'-nucleotidase (ushA) K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D TP_0419 survival protein, putative K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D TP_1027 uridine phosphorylase (udp) K00757 udp; uridine phosphorylase [EC:2.4.2.3] D TP_0448 uracil phosphoribosyltransferase, putative K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D TP_1008 ribonucleoside-diphosphate reductase, subunit alpha (nrdA) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TP_0053 ribonucleoside-diphosphate reductase, subunit beta (nrdB) K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D TP_0274 deoxycytidylate deaminase, putative K01493 comEB; dCMP deaminase [EC:3.5.4.12] D TP_0354 thymidylate kinase (tmk) K00943 tmk; dTMP kinase [EC:2.7.4.9] D TP_0885 deoxyuridine 5'-triphosphate nucleotidohydrolase (dut) K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D TP_1007 thymidylate synthase-complementing protein (thy1) K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:tpa00250] D TP_0223 aspartate aminotransferase (tpaaT) K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D TP_0556 asparagine synthetase (asnA) K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] D TP_0735 glutamate synthase (gltA) K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D TP_0861 glucosamine-fructose-6-phosphate aminotransferase (glmS) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] C 00260 Glycine, serine and threonine metabolism [PATH:tpa00260] D TP_0329 serine hydroxymethyltransferase (glyA) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D TP_0168 phosphoglycerate mutase (pgm) K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] C 00270 Cysteine and methionine metabolism [PATH:tpa00270] D TP_0794 S-adenosylmethionine synthetase (metK) K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D TP_0170 pfs protein (pfs) K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D TP_0223 aspartate aminotransferase (tpaaT) K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00280 Valine, leucine and isoleucine degradation C 00290 Valine, leucine and isoleucine biosynthesis C 00300 Lysine biosynthesis [PATH:tpa00300] D TP_0933 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (murE) K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D TP_0386 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (murF) K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation C 00220 Arginine biosynthesis D TP_0223 aspartate aminotransferase (tpaaT) K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00330 Arginine and proline metabolism [PATH:tpa00330] D TP_0797 1-pyrroline-5-carboxylate reductase (proC) K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D TP_0351 glutamate 5-kinase (proB) K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D TP_0350 glutamate-5-semialdehyde dehydrogenase (proA) K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D TP_0223 aspartate aminotransferase (tpaaT) K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism C 00350 Tyrosine metabolism D TP_0223 aspartate aminotransferase (tpaaT) K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00360 Phenylalanine metabolism D TP_0223 aspartate aminotransferase (tpaaT) K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00380 Tryptophan metabolism C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:tpa00400] D TP_0223 aspartate aminotransferase (tpaaT) K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism C 00430 Taurine and hypotaurine metabolism [PATH:tpa00430] D TP_0094 phosphate acetyltransferase (pta) K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D TP_0476 acetate kinase (ack) K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism C 00450 Selenocompound metabolism [PATH:tpa00450] D TP_0614 nitrogen fixation protein (nifS-1) K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D TP_0814 thioredoxin reductase (trxB) K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D TP_0798 methionyl-tRNA synthetase (metG) K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:tpa00460] D TP_0556 asparagine synthetase (asnA) K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] D TP_0329 serine hydroxymethyltransferase (glyA) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:tpa00470] D TP_0681 alanine racemase (alr) K01775 alr; alanine racemase [EC:5.1.1.1] D TP_0670 D-alanine--D-alanine ligase (ddlA) K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D TP_0406 glutamate racemase (murI) K01776 murI; glutamate racemase [EC:5.1.1.3] D TP_0903 UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] C 00480 Glutathione metabolism [PATH:tpa00480] D TP_0331 phosphogluconate dehydrogenase (gnd) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D TP_0478 glucose-6-phosphate 1-dehydrogenase (zwf) K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis C 00550 Peptidoglycan biosynthesis [PATH:tpa00550] D TP_0029 UDP-N-acetylglucosamine 1-carboxyvinyltransferase (murA) K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D TP_0090 UDP-N-acetylmuramate dehydrogenase (murB) K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D TP_0341 UDP-N-acetylmuramate--alanine ligase (murC) K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D TP_0903 UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D TP_0933 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (murE) K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D TP_0670 D-alanine--D-alanine ligase (ddlA) K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D TP_0386 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (murF) K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D TP_0603 conserved hypothetical protein K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D TP_0345 phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D TP_0523 UDP-N-glucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (murG) K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D TP_0705 penicillin-binding protein (pbp-2) K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D TP_0500 penicillin-binding protein (pbp-1) K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D TP_0760 penicillin-binding protein (pbp-3) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D TP_0800 serine-type D-Ala-D-Ala carboxypeptidase (dacC) K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D TP_0221 D,D-carboxypeptidase, putative K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] C 00552 Teichoic acid biosynthesis C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:tpa00730] D TP_0863 nitrogen fixation protein (nifS-2) K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D TP_0559 conserved hypothetical protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D TP_0824 transketolase B (tktB) K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D TP_0518 conserved hypothetical protein K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2] D TP_0595 adenylate kinase (adk) K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:tpa00740] D TP_0888 riboflavin kinase/FMN adenylyltransferase (ribF) K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] C 00750 Vitamin B6 metabolism [PATH:tpa00750] D TP_0115 phosphomethypyrimidine kinase (thiD) K00868 pdxK; pyridoxine kinase [EC:2.7.1.35] C 00760 Nicotinate and nicotinamide metabolism [PATH:tpa00760] D TP_0628 conserved hypothetical protein K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D TP_0734 purine nucleoside phosphorylase (deoD) K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D TP_0104 5'-nucleotidase (ushA) K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D TP_0419 survival protein, putative K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D TP_0741 conserved hypothetical protein K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D TP_0780 NH(3)-dependent NAD(+) synthetase (nadE) K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] D TP_0441 conserved hypothetical protein K00858 ppnK; NAD+ kinase [EC:2.7.1.23] C 00770 Pantothenate and CoA biosynthesis [PATH:tpa00770] D TP_0431 conserved hypothetical protein K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D TP_0283 lipopolysaccharide core biosynthesis protein (kdtB) K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D TP_0296 conserved hypothetical protein K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D TP_0828 holo-acyl-carrier protein synthase (acpS) K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] C 00780 Biotin metabolism [PATH:tpa00780] D TP_0357 biotin--acetyl-CoA-carboxylase ligase (birA) K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism C 00790 Folate biosynthesis [PATH:tpa00790] D TP_0340 folylpolyglutamate synthetase (folC) K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] C 00670 One carbon pool by folate [PATH:tpa00670] D TP_0732 methylenetetrahydrofolate dehydrogenase (folD) K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D TP_0329 serine hydroxymethyltransferase (glyA) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D TP_0756 methionyl-tRNA formyltransferase (fmt) K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D TP_1007 thymidylate synthase-complementing protein (thy1) K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D TP_0694 5,10-methenyltetrahydrofolate synthetase, putative K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism D TP_0673 glutamyl-tRNA synthetase (gltX) K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:tpa00900] D TP_0824 transketolase B (tktB) K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D TP_0601 conserved hypothetical protein K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D TP_0512 conserved hypothetical protein K12506 ispDF; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12] D TP_0371 conserved hypothetical protein K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D TP_0446 gcpE protein (gcpE) K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D TP_0547 penicillin tolerance protein (lytB) K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D TP_0683 octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D TP_0603 conserved hypothetical protein K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D TP_0560 transketolase A (tktA) K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis [PATH:tpa00332] D TP_0351 glutamate 5-kinase (proB) K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D TP_0350 glutamate-5-semialdehyde dehydrogenase (proA) K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:tpa00521] D TP_0505 hexokinase (hxk) K00844 HK; hexokinase [EC:2.7.1.1] D TP_0642 phosphomannomutase (manB) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D TP_0505 hexokinase (hxk) K00844 HK; hexokinase [EC:2.7.1.1] C 00525 Acarbose and validamycin biosynthesis C 00401 Novobiocin biosynthesis D TP_0223 aspartate aminotransferase (tpaaT) K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis C 00333 Prodigiosin biosynthesis C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D TP_0808 acyl carrier protein (acpP) K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites D TP_0794 S-adenosylmethionine synthetase (metK) K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation D TP_0057 oxaloacetate decarboxylase, subunit beta (oadB) K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] C 00627 Aminobenzoate degradation C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation C 00361 Chlorocyclohexane and chlorobenzene degradation C 00623 Toluene degradation C 00622 Xylene degradation C 00633 Nitrotoluene degradation C 00642 Ethylbenzene degradation C 00643 Styrene degradation C 00791 Atrazine degradation C 00930 Caprolactam degradation C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:tpa03020] D TP_0241 DNA-directed RNA polymerase, beta subunit (rpoB) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D TP_0242 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D TP_0212 DNA-directed RNA polymerase, alpha subunit (rpoA) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D TP_0701 DNA-directed RNA polymerase, putative K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors D TP_0380 DNA repair helicase, putative K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:tpa03010] D TP_0279 ribosomal protein S1 (rpsA) K02945 RP-S1; small subunit ribosomal protein S1 D TP_0606 ribosomal protein S2 (rpsB) K02967 RP-S2; small subunit ribosomal protein S2 D TP_0195 ribosomal protein S3 (rpsC) K02982 RP-S3; small subunit ribosomal protein S3 D TP_0306 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D TP_0206 ribosomal protein S5 (rpsE) K02988 RP-S5; small subunit ribosomal protein S5 D TP_0063 ribosomal protein S6 (rpsF) K02990 RP-S6; small subunit ribosomal protein S6 D TP_0244 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D TP_0203 ribosomal protein S8 (rpsH) K02994 RP-S8; small subunit ribosomal protein S8 D TP_1024 ribosomal protein S9 (rpsI) K02996 RP-S9; small subunit ribosomal protein S9 D TP_0188 ribosomal protein S10 (rpsJ) K02946 RP-S10; small subunit ribosomal protein S10 D TP_0211 ribosomal protein S11 (rpsK) K02948 RP-S11; small subunit ribosomal protein S11 D TP_0243 ribosomal protein S12 (rpsL) K02950 RP-S12; small subunit ribosomal protein S12 D TP_0210 ribosomal protein S13 (rpsM) K02952 RP-S13; small subunit ribosomal protein S13 D TP_0202 ribosomal protein S14 (rpsN) K02954 RP-S14; small subunit ribosomal protein S14 D TP_0887 ribosomal protein S15 (rpsO) K02956 RP-S15; small subunit ribosomal protein S15 D TP_0905 ribosomal protein S16 (rpsP) K02959 RP-S16; small subunit ribosomal protein S16 D TP_0198 ribosomal protein S17 (rpsQ) K02961 RP-S17; small subunit ribosomal protein S17 D TP_0061 ribosomal protein S18 (rpsR) K02963 RP-S18; small subunit ribosomal protein S18 D TP_0193 ribosomal protein S19 (rpsS) K02965 RP-S19; small subunit ribosomal protein S19 D TP_0758 ribosomal protein S21 (rpsU) K02970 RP-S21; small subunit ribosomal protein S21 D TP_0238 ribosomal protein L1 (rplA) K02863 RP-L1; large subunit ribosomal protein L1 D TP_0192 ribosomal protein L2 (rplB) K02886 RP-L2; large subunit ribosomal protein L2 D TP_0189 ribosomal protein L3 (rplC) K02906 RP-L3; large subunit ribosomal protein L3 D TP_0190 ribosomal protein L4 (rplD) K02926 RP-L4; large subunit ribosomal protein L4 D TP_0201 ribosomal protein L5 (rplE) K02931 RP-L5; large subunit ribosomal protein L5 D TP_0204 ribosomal protein L6 (rplF) K02933 RP-L6; large subunit ribosomal protein L6 D TP_0240 ribosomal protein L7/L12 (rplL) K02935 RP-L7; large subunit ribosomal protein L7/L12 D TP_0060 ribosomal protein L9 (rplI) K02939 RP-L9; large subunit ribosomal protein L9 D TP_0239 ribosomal protein L10 (rplJ) K02864 RP-L10; large subunit ribosomal protein L10 D TP_0237 ribosomal protein L11 (rplK) K02867 RP-L11; large subunit ribosomal protein L11 D TP_1025 ribosomal protein L13 (rplM) K02871 RP-L13; large subunit ribosomal protein L13 D TP_0199 ribosomal protein L14 (rplN) K02874 RP-L14; large subunit ribosomal protein L14 D TP_0207 ribosomal protein L15 (rplO) K02876 RP-L15; large subunit ribosomal protein L15 D TP_0196 ribosomal protein L16 (rplP) K02878 RP-L16; large subunit ribosomal protein L16 D TP_0213 ribosomal protein L17 (rplQ) K02879 RP-L17; large subunit ribosomal protein L17 D TP_0205 ribosomal protein L18 (rplR) K02881 RP-L18; large subunit ribosomal protein L18 D TP_0909 ribosomal protein L19 (rplS) K02884 RP-L19; large subunit ribosomal protein L19 D TP_0848 ribosomal protein L20 (rplT) K02887 RP-L20; large subunit ribosomal protein L20 D TP_0745 ribosomal protein L21 (rplU) K02888 RP-L21; large subunit ribosomal protein L21 D TP_0194 ribosomal protein L22 (rplV) K02890 RP-L22; large subunit ribosomal protein L22 D TP_0191 ribosomal protein L23 (rplW) K02892 RP-L23; large subunit ribosomal protein L23 D TP_0200 ribosomal protein L24 (rplX) K02895 RP-L24; large subunit ribosomal protein L24 D TP_0372 general stress protein (ctc) K02897 RP-L25; large subunit ribosomal protein L25 D TP_0743 ribosomal protein L27 (rpl27) K02899 RP-L27; large subunit ribosomal protein L27 D TP_0362 ribosomal protein L28 (rpmB) K02902 RP-L28; large subunit ribosomal protein L28 D TP_0197 ribosomal protein L29 (rpmC) K02904 RP-L29; large subunit ribosomal protein L29 D TP_0255 ribosomal protein L31 (rpmE) K02909 RP-L31; large subunit ribosomal protein L31 D TP_0807 ribosomal protein L32 (rpmF) K02911 RP-L32; large subunit ribosomal protein L32 D TP_0234 ribosomal protein L33 (rpmG) K02913 RP-L33; large subunit ribosomal protein L33 D TP_0951 ribosomal protein L34 (rpmH) K02914 RP-L34; large subunit ribosomal protein L34 D TP_0849 ribosomal protein L35 (rpmI) K02916 RP-L35; large subunit ribosomal protein L35 D TP_0209 ribosomal protein L36 (rpmJ-1) K02919 RP-L36; large subunit ribosomal protein L36 D TP_0590 ribosomal protein L36 (rpmJ-2) K02919 RP-L36; large subunit ribosomal protein L36 D TP_r01 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TP_r04 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TP_r02 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D TP_r05 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:tpa00970] D TP_t45 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D TP_t41 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D TP_t15 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D TP_t30 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TP_t03 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TP_t31 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TP_t26 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TP_t35 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TP_t24 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D TP_t28 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D TP_t25 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D TP_t06 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D TP_t18 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D TP_t07 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D TP_t08 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D TP_t23 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D TP_t17 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D TP_t32 tRNA-His K14226 tRNA-His; tRNA His D TP_t12 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D TP_t22 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TP_t10 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TP_t44 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TP_t40 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TP_t16 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TP_t39 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D TP_t21 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D TP_t37 tRNA-Met K14230 tRNA-Met; tRNA Met D TP_t11 tRNA-Met K14230 tRNA-Met; tRNA Met D TP_t29 tRNA-Met K14230 tRNA-Met; tRNA Met D TP_t33 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D TP_t34 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D TP_t38 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D TP_t27 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D TP_t04 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TP_t01 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TP_t02 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TP_t05 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TP_t13 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D TP_t42 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D TP_t19 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D TP_t14 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D TP_t20 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D TP_t36 tRNA-Val K14237 tRNA-Val; tRNA Val D TP_t43 tRNA-Val K14237 tRNA-Val; tRNA Val D TP_t09 tRNA-Val K14237 tRNA-Val; tRNA Val D TP_0673 glutamyl-tRNA synthetase (gltX) K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D TP_1020 glu-tRNA amidotransferase, subunit A (gatA) K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D TP_1021 glu-tRNA amidotransferase, subunit B (gatB) K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D TP_1019 glu-tRNA amidotransferase, subunit C (gatC) K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D TP_1017 alanyl-tRNA synthetase (alaS) K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D TP_0985 aspartyl-tRNA synthetase (aspS) K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D TP_0609 asparaginyl-tRNA synthetase (asnS) K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D TP_0672 glycyl-tRNA synthetase (glyS) K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D TP_0837 threonyl-tRNA synthetase (thrS) K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D TP_0647 seryl-tRNA synthetase (serS) K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D TP_0091 cysteinyl-tRNA synthetase (cysS) K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D TP_0798 methionyl-tRNA synthetase (metG) K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D TP_0756 methionyl-tRNA formyltransferase (fmt) K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D TP_1035 valyl-tRNA synthetase (valS) K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D TP_0586 leucyl-tRNA synthetase (leuS) K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D TP_0452 isoleucyl-tRNA synthetase (ileS) K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D TP_0644 lysyl-tRNA synthetase (lysS-1) K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D TP_0831 arginyl-tRNA synthetase (argS) K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D TP_0160 prolyl-tRNA synthetase (proS) K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D TP_0641 histidyl-tRNA synthetase (hisS) K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D TP_0973 phenylalanyl-tRNA synthetase alpha subunit (pheS) K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D TP_0015 phenylalanyl-tRNA synthetase beta subunit (pheT) K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D TP_0834 tyrosyl-tRNA synthetase (tyrS) K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D TP_0632 tryptophanyl-tRNA synthetase (trsA) K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:tpa03060] D TP_0208 preprotein translocase subunit (secY) K03076 secY; preprotein translocase subunit SecY D TP_0235 preprotein translocase subunit (secE) K03073 secE; preprotein translocase subunit SecE D TP_0536 predicted coding region TP0536 K03075 secG; preprotein translocase subunit SecG D TP_0410 protein-export membrane protein (secD) K03072 secD; preprotein translocase subunit SecD D TP_0411 protein-export membrane protein (secF) K03074 secF; preprotein translocase subunit SecF D TP_0949 membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D TP_0379 preprotein translocase subunit (secA) K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D TP_0416 signal recognition particle protein (ffh) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D TP_0578 cell division protein (ftsY) K03110 ftsY; fused signal recognition particle receptor D TP_0185 signal peptidase I (sip) K03100 lepB; signal peptidase I [EC:3.4.21.89] D TP_0926 signal peptidase I, putative K03100 lepB; signal peptidase I [EC:3.4.21.89] D TP_0978 signal peptidase II (lsp) K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:tpa04122] D TP_0863 nitrogen fixation protein (nifS-2) K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D TP_0559 conserved hypothetical protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] C 03050 Proteasome C 03018 RNA degradation [PATH:tpa03018] D TP_0817 enolase (eno) K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D TP_0886 polyribonucleotide nucleotidyltransferase (pnp) K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D TP_0103 ATP-dependent DNA helicase, putative K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D TP_0254 transcription termination factor Rho (rho) K03628 rho; transcription termination factor Rho D TP_1018 conserved hypothetical protein K18682 rny; ribonucrease Y [EC:3.1.-.-] D TP_0108 pyrophosphate--fructose 6-phosphate 1-phosphotransferase (pfk) K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D TP_0216 heat shock protein 70 (dnaK) K04043 dnaK; molecular chaperone DnaK D TP_0030 heat shock protein (groEL) K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D TP_0596 polynucleotide adenylyltransferase (pcnB) K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:tpa03030] D TP_0643 DNA polymerase III, subunit epsilon (dnaQ) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TP_0669 DNA polymerase III, subunit alpha (dnaE) K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D TP_0521 DNA polymerase III, gamma and tau subunits, putative K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TP_1005 DNA polymerase III, subunits gamma and tau (dnaH) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TP_0588 conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D TP_0002 DNA polymerase III, subunit beta (dnaN) K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D TP_0058 replicative DNA helicase (dnaB) K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D TP_0492 DNA primase (dnaG) K02316 dnaG; DNA primase [EC:2.7.7.101] D TP_0062 single-strand DNA binding protein (ssb) K03111 ssb; single-strand DNA-binding protein D TP_0353 ribonuclease H (rnhA) K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D TP_0634 DNA ligase (lig) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:tpa03410] D TP_0775 endonuclease III (nth) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D TP_0343 A/G-specific adenine glycosylase, putative K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D TP_0229 DNA polymerase, bacteriophage-type K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D TP_0125 exodeoxyribonuclease (exoA) K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D TP_0704 single-stranded-DNA-specific exonuclease (recJ) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D TP_0634 DNA ligase (lig) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:tpa03420] D TP_0344 transcription-repair coupling factor (trcF) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D TP_0514 excinuclease ABC, subunit A (uvrA) K03701 uvrA; excinuclease ABC subunit A D TP_0116 excinuclease ABC, subunit B (uvrB) K03702 uvrB; excinuclease ABC subunit B D TP_0472 excinuclease ABC, subunit C (uvrC) K03703 uvrC; excinuclease ABC subunit C D TP_1028 DNA helicase II (uvrD) K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TP_0102 rep helicase, single-stranded DNA-dependent ATPase (rep) K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TP_0634 DNA ligase (lig) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TP_0380 DNA repair helicase, putative K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] C 03430 Mismatch repair [PATH:tpa03430] D TP_0328 DNA mismatch repair protein (mutS) K03555 mutS; DNA mismatch repair protein MutS D TP_0303 DNA mismatch repair protein (mutL) K03572 mutL; DNA mismatch repair protein MutL D TP_1028 DNA helicase II (uvrD) K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TP_0102 rep helicase, single-stranded DNA-dependent ATPase (rep) K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TP_0704 single-stranded-DNA-specific exonuclease (recJ) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D TP_0062 single-strand DNA binding protein (ssb) K03111 ssb; single-strand DNA-binding protein D TP_0669 DNA polymerase III, subunit alpha (dnaE) K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D TP_0002 DNA polymerase III, subunit beta (dnaN) K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D TP_0521 DNA polymerase III, gamma and tau subunits, putative K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TP_1005 DNA polymerase III, subunits gamma and tau (dnaH) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TP_0588 conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D TP_0643 DNA polymerase III, subunit epsilon (dnaQ) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TP_0634 DNA ligase (lig) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TP_0810 DNA adenine methyltransferase (dam) K06223 dam; DNA adenine methylase [EC:2.1.1.72] C 03440 Homologous recombination [PATH:tpa03440] D TP_0704 single-stranded-DNA-specific exonuclease (recJ) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D TP_0062 single-strand DNA binding protein (ssb) K03111 ssb; single-strand DNA-binding protein D TP_0003 recF protein (recF) K03629 recF; DNA replication and repair protein RecF D TP_1004 recombination protein (recR) K06187 recR; recombination protein RecR D TP_0692 recA protein (recA) K03553 recA; recombination protein RecA D TP_0543 Holliday junction DNA helicase (ruvA) K03550 ruvA; holliday junction DNA helicase RuvA D TP_0162 Holliday junction DNA helicase (ruvB) K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D TP_0517 Holliday junction nuclease (ruvC) K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D TP_0687 DNA recombinase (recG) K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D TP_0669 DNA polymerase III, subunit alpha (dnaE) K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D TP_0002 DNA polymerase III, subunit beta (dnaN) K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D TP_0521 DNA polymerase III, gamma and tau subunits, putative K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TP_1005 DNA polymerase III, subunits gamma and tau (dnaH) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TP_0588 conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D TP_0643 DNA polymerase III, subunit epsilon (dnaQ) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TP_0230 primosomal protein N (priA) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 [PATH:tpa03250] D TP_0947 peptidyl-prolyl cis-trans isomerase, cyclophilin-binding (cyp) K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03272 Virion - Hepatitis viruses C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:tpa02010] D TP_0144 thiamine ABC transporter, thiamine-binding periplasmic protein, putative K02064 thiB; thiamine transport system substrate-binding protein D TP_0143 thiamine ABC transporter, permease protein, putative K02063 thiP; thiamine transport system permease protein D TP_0142 thiamine ABC transporter, ATP-binding protein, putative K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D TP_0655 spermidine/putrescine ABC transporter, periplasmic binding protein (potD) K11069 potD; spermidine/putrescine transport system substrate-binding protein D TP_0654 spermidine/putrescine ABC transporter, permease protein (potC) K11070 potC; spermidine/putrescine transport system permease protein D TP_0653 spermidine/putrescine ABC transporter, permease protein (potB) K11071 potB; spermidine/putrescine transport system permease protein D TP_0652 spermidine/putrescine ABC transporter, ATP-binding protein (potA) K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D TP_0804 sugar ABC transporter, ATP-binding protein (ugpC) K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D TP_0319 membrane lipoprotein (tmpC) K07335 bmpA; basic membrane protein A and related proteins D TP_0322 ribose/galactose ABC transporter, permease protein (rbsC-1) K23535 nupB; general nucleoside transport system permease protein D TP_0323 ribose/galactose ABC transporter, permease protein (rbsC-2) K23536 nupC; general nucleoside transport system permease protein D TP_0321 ribose/galactose ABC transporter, ATP-binding protein (rbsA-2) K23537 nupA; general nucleoside transport system ATP-binding protein D TP_0684 methylgalactoside ABC transporter, periplasmic galactose-binding protein (mglB-2) K10540 mglB; methyl-galactoside transport system substrate-binding protein D TP_0545 methylgalactoside ABC transporter, periplasmic galactose-binding protein (mglB-1) K10540 mglB; methyl-galactoside transport system substrate-binding protein D TP_0686 methylgalactoside ABC transporter, permease protein (mglC) K10541 mglC; methyl-galactoside transport system permease protein D TP_0685 methylgalactoside ABC transporter, ATP binding protein (mglA) K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11] D TP_0821 lipoprotein (tpn32) K02073 metQ; D-methionine transport system substrate-binding protein D TP_0119 amino acid ABC transporter, permease protein (yaeE) K02072 metI; D-methionine transport system permease protein D TP_0120 amino acid ABC transporter, ATP-binding protein (abc) K02071 metN; D-methionine transport system ATP-binding protein D TP_0034 ABC transporter, periplasmic binding protein K09815 znuA; zinc transport system substrate-binding protein D TP_0036 ABC transporter, permease protein K09816 znuB; zinc transport system permease protein D TP_0035 ABC transporter, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D TP_0163 ABC transporter, periplasmic binding protein (troA) K11707 troA; manganese/zinc/iron transport system substrate-binding protein D TP_0165 ABC transporter, permease protein (troC) K11708 troC; manganese/zinc/iron transport system permease protein D TP_0166 ABC transporter, permease protein (troD) K11709 troD; manganese/zinc/iron transport system permease protein D TP_0164 ABC transporter, ATP-binding protein (troB) K11710 troB; manganese/zinc/iron transport system ATP- binding protein [EC:7.2.2.5] D TP_0228 biotin synthase, putative K03523 bioY; biotin transport system substrate-specific component D TP_0226 predicted coding region TP0226 K16783 bioN; biotin transport system permease protein D TP_0227 cobalt ABC transporter, ATP-binding protein K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-] D TP_0298 exported protein (tpn38b) K23510 rfuA; riboflavin transport system substrate-binding protein D TP_0301 conserved hypothetical integral membrane protein K23511 rfuC; riboflavin transport system permease protein D TP_0302 conserved hypothetical integral membrane protein K23512 rfuD; riboflavin transport system permease protein D TP_0300 ribose/galactose ABC transporter, ATP-binding protein (rbsA-1) K23513 rfuB; riboflavin transport system ATP-binding protein D TP_0582 conserved hypothetical integral membrane protein K09808 lolC_E; lipoprotein-releasing system permease protein D TP_0580 conserved hypothetical integral membrane protein K09808 lolC_E; lipoprotein-releasing system permease protein D TP_0581 ABC transporter, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D TP_0884 conserved hypothetical integral membrane protein K07091 lptF; lipopolysaccharide export system permease protein D TP_0883 conserved hypothetical integral membrane protein K11720 lptG; lipopolysaccharide export system permease protein D TP_0786 ABC transporter, ATP-binding protein, putative K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] C 02060 Phosphotransferase system (PTS) [PATH:tpa02060] D TP_0589 phosphocarrier protein HPr (ptsH) K02784 ptsH; phosphocarrier protein HPr D TP_0755 PTS system, nitrogen regulatory IIA component (ptsN-2) K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D TP_0085 PTS system, nitrogen regulatory IIA component (ptsN-1) K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] C 03070 Bacterial secretion system [PATH:tpa03070] D TP_0410 protein-export membrane protein (secD) K03072 secD; preprotein translocase subunit SecD D TP_0411 protein-export membrane protein (secF) K03074 secF; preprotein translocase subunit SecF D TP_0235 preprotein translocase subunit (secE) K03073 secE; preprotein translocase subunit SecE D TP_0536 predicted coding region TP0536 K03075 secG; preprotein translocase subunit SecG D TP_0208 preprotein translocase subunit (secY) K03076 secY; preprotein translocase subunit SecY D TP_0949 membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D TP_0379 preprotein translocase subunit (secA) K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D TP_0578 cell division protein (ftsY) K03110 ftsY; fused signal recognition particle receptor D TP_0416 signal recognition particle protein (ffh) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] B B 09132 Signal transduction C 02020 Two-component system [PATH:tpa02020] D TP_0792 flagellar filament 33 kDa core protein (flaB2) K02406 fliC; flagellin D TP_0868 flagellar filament 34.5 kDa core protein (flaB1) K02406 fliC; flagellin D TP_0870 flagellar filament 31 kDa core protein (flaB3) K02406 fliC; flagellin D TP_0709 RNA polymerase sigma-28 factor K02405 fliA; RNA polymerase sigma factor FliA D TP_0725 flagellar motor rotation protein (motA) K02556 motA; chemotaxis protein MotA D TP_0001 chromosomal replication initiator protein (dnaA) K02313 dnaA; chromosomal replication initiator protein D TP_0221 D,D-carboxypeptidase, putative K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D TP_0657 carbon storage regulator (csrA) K03563 csrA; carbon storage regulator D TP_0111 RNA polymerase sigma-54 factor (rpoN) K03092 rpoN; RNA polymerase sigma-54 factor D TP_0630 chemotaxis protein methyltransferase (cheR) K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D TP_0488 methyl-accepting chemotaxis protein (mcp2-1) K03406 mcp; methyl-accepting chemotaxis protein D TP_0040 methyl-accepting chemotaxis protein (mcp1) K03406 mcp; methyl-accepting chemotaxis protein D TP_0639 methyl-accepting chemotaxis protein (mcp2-2) K03406 mcp; methyl-accepting chemotaxis protein D TP_0640 methyl-accepting chemotaxis protein (mcp2-3) K03406 mcp; methyl-accepting chemotaxis protein D TP_0439 purine-binding chemotaxis protein (cheW-2) K03408 cheW; purine-binding chemotaxis protein CheW D TP_0363 chemotaxis histidine kinase (cheA) K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D TP_0366 chemotaxis response regulator (cheY) K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D TP_0631 protein-glutamate methylesterase (cheB) K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D TP_0364 purine-binding chemotaxis protein (cheW-1) K02659 pilI; twitching motility protein PilI C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:tpa02024] D TP_0145 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TP_0585 oligopeptide ABC transporter, periplasmic binding protein (oppA) K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TP_0949 membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D TP_0235 preprotein translocase subunit (secE) K03073 secE; preprotein translocase subunit SecE D TP_0536 predicted coding region TP0536 K03075 secG; preprotein translocase subunit SecG D TP_0208 preprotein translocase subunit (secY) K03076 secY; preprotein translocase subunit SecY D TP_0379 preprotein translocase subunit (secA) K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D TP_0578 cell division protein (ftsY) K03110 ftsY; fused signal recognition particle receptor D TP_0416 signal recognition particle protein (ffh) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:tpa02030] D TP_0488 methyl-accepting chemotaxis protein (mcp2-1) K03406 mcp; methyl-accepting chemotaxis protein D TP_0040 methyl-accepting chemotaxis protein (mcp1) K03406 mcp; methyl-accepting chemotaxis protein D TP_0639 methyl-accepting chemotaxis protein (mcp2-2) K03406 mcp; methyl-accepting chemotaxis protein D TP_0640 methyl-accepting chemotaxis protein (mcp2-3) K03406 mcp; methyl-accepting chemotaxis protein D TP_0684 methylgalactoside ABC transporter, periplasmic galactose-binding protein (mglB-2) K10540 mglB; methyl-galactoside transport system substrate-binding protein D TP_0545 methylgalactoside ABC transporter, periplasmic galactose-binding protein (mglB-1) K10540 mglB; methyl-galactoside transport system substrate-binding protein D TP_0363 chemotaxis histidine kinase (cheA) K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D TP_0439 purine-binding chemotaxis protein (cheW-2) K03408 cheW; purine-binding chemotaxis protein CheW D TP_0366 chemotaxis response regulator (cheY) K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D TP_0365 chemotaxis protein (cheX) K03409 cheX; chemotaxis protein CheX D TP_0631 protein-glutamate methylesterase (cheB) K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D TP_0630 chemotaxis protein methyltransferase (cheR) K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D TP_0026 flagellar motor switch protein (fliG-1) K02410 fliG; flagellar motor switch protein FliG D TP_0400 flagellar motor switch protein (fliG-2) K02410 fliG; flagellar motor switch protein FliG D TP_0721 flagellar motor switch protein (fliM) K02416 fliM; flagellar motor switch protein FliM D TP_0720 flagellar motor switch protein (fliY) K02417 fliN; flagellar motor switch protein FliN D TP_0725 flagellar motor rotation protein (motA) K02556 motA; chemotaxis protein MotA D TP_0724 flagellar motor rotation protein (motB) K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:tpa02040] D TP_0398 flagellar hook-basal body complex protein (fliE) K02408 fliE; flagellar hook-basal body complex protein FliE D TP_0399 flagellar basal-body M ring protein (fliF) K02409 fliF; flagellar M-ring protein FliF D TP_0026 flagellar motor switch protein (fliG-1) K02410 fliG; flagellar motor switch protein FliG D TP_0400 flagellar motor switch protein (fliG-2) K02410 fliG; flagellar motor switch protein FliG D TP_0401 flagellar assembly protein (fliH) K02411 fliH; flagellar assembly protein FliH D TP_0402 flagellum-specific ATP synthase (fliI) K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D TP_0403 flagellar protein, putative K02413 fliJ; flagellar protein FliJ D TP_0722 flagellar protein (fliL) K02415 fliL; flagellar protein FliL D TP_0378 flagellar protein, putative K02415 fliL; flagellar protein FliL D TP_0721 flagellar motor switch protein (fliM) K02416 fliM; flagellar motor switch protein FliM D TP_0720 flagellar motor switch protein (fliY) K02417 fliN; flagellar motor switch protein FliN D TP_0719 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ D TP_0718 flagellar biosynthetic protein (fliP) K02419 fliP; flagellar biosynthesis protein FliP D TP_0717 flagellar biosynthetic protein (fliQ) K02420 fliQ; flagellar biosynthesis protein FliQ D TP_0716 flagellar biosynthetic protein (fliR) K02421 fliR; flagellar biosynthesis protein FliR D TP_0714 flagellar biosynthesis protein (flhA) K02400 flhA; flagellar biosynthesis protein FlhA D TP_0715 flagellar biosynthetic protein (flhB) K02401 flhB; flagellar biosynthesis protein FlhB D TP_0396 flagellar basal-body rod protein (flgB) K02387 flgB; flagellar basal-body rod protein FlgB D TP_0397 flagellar basal-body rod protein (flgC) K02388 flgC; flagellar basal-body rod protein FlgC D TP_0728 flagellar hook assembly scaffolding protein (flgD) K02389 flgD; flagellar basal-body rod modification protein FlgD D TP_0727 flagellar hook protein (flgE) K02390 flgE; flagellar hook protein FlgE D TP_0961 flagellar basal-body rod protein (flgG-2) K02391 flgF; flagellar basal-body rod protein FlgF D TP_0960 flagellar basal-body rod protein (flgG-1) K02392 flgG; flagellar basal-body rod protein FlgG D TP_0959 predicted coding region TP0959 K02395 flgJ; peptidoglycan hydrolase FlgJ D TP_0660 flagellar hook-associated protein 1 (flgK) K02396 flgK; flagellar hook-associated protein 1 D TP_0659 flagellar hook-associated protein 3 (flgL) K02397 flgL; flagellar hook-associated protein 3 FlgL D TP_0792 flagellar filament 33 kDa core protein (flaB2) K02406 fliC; flagellin D TP_0868 flagellar filament 34.5 kDa core protein (flaB1) K02406 fliC; flagellin D TP_0870 flagellar filament 31 kDa core protein (flaB3) K02406 fliC; flagellin D TP_0872 flagellar filament cap protein (fliD) K02407 fliD; flagellar hook-associated protein 2 D TP_0943 flagellar protein (fliS) K02422 fliS; flagellar secretion chaperone FliS D TP_0725 flagellar motor rotation protein (motA) K02556 motA; chemotaxis protein MotA D TP_0724 flagellar motor rotation protein (motB) K02557 motB; chemotaxis protein MotB D TP_0493 RNA polymerase sigma-70 factor (rpoD) K03086 rpoD; RNA polymerase primary sigma factor D TP_0111 RNA polymerase sigma-54 factor (rpoN) K03092 rpoN; RNA polymerase sigma-54 factor D TP_0709 RNA polymerase sigma-28 factor K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D TP_0817 enolase (eno) K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:tpa01501] D TP_0705 penicillin-binding protein (pbp-2) K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D TP_0500 penicillin-binding protein (pbp-1) K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D TP_0760 penicillin-binding protein (pbp-3) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:tpa01502] D TP_0670 D-alanine--D-alanine ligase (ddlA) K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D TP_0681 alanine racemase (alr) K01775 alr; alanine racemase [EC:5.1.1.1] D TP_0386 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (murF) K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D TP_0345 phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D TP_0523 UDP-N-glucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (murG) K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D TP_0221 D,D-carboxypeptidase, putative K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:tpa01503] D TP_0247 N-acetylmuramoyl-L-alanine amidase (amiA) K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D TP_0947 peptidyl-prolyl cis-trans isomerase, cyclophilin-binding (cyp) K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:tpa01000] C 01001 Protein kinases [BR:tpa01001] D TP_0363 chemotaxis histidine kinase (cheA) K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:tpa01009] D TP_0108 pyrophosphate--fructose 6-phosphate 1-phosphotransferase (pfk) K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D TP_0984 heat shock protein 90 (htpG) K04079 HSP90A; molecular chaperone HtpG C 01002 Peptidases and inhibitors [BR:tpa01002] D TP_0978 signal peptidase II (lsp) K03101 lspA; signal peptidase II [EC:3.4.23.36] D TP_0112 aminopeptidase C (pepC) K01372 BLMH; bleomycin hydrolase [EC:3.4.22.40] D TP_0861 glucosamine-fructose-6-phosphate aminotransferase (glmS) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D TP_0445 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme (thiJ) K03152 thiJ; protein deglycase [EC:3.5.1.124] D TP_0335 predicted coding region TP0335 K07052 K07052; CAAX protease family protein D TP_0221 D,D-carboxypeptidase, putative K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D TP_0025 conserved hypothetical protein K06972 PITRM1; presequence protease [EC:3.4.24.-] D TP_0842 methionine aminopeptidase (map) K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D TP_0569 aminopeptidase P K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D TP_0765 cell division protein (ftsH) K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D TP_0600 zinc protease, putative K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D TP_0800 serine-type D-Ala-D-Ala carboxypeptidase (dacC) K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D TP_1041 ATP-dependent Clp protease proteolytic component (clpP-2) K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D TP_0507 ATP-dependent Clp protease proteolytic component (clpP-1) K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D TP_0524 ATP-dependent protease LA (lon-2) K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D TP_0185 signal peptidase I (sip) K03100 lepB; signal peptidase I [EC:3.4.21.89] D TP_0926 signal peptidase I, putative K03100 lepB; signal peptidase I [EC:3.4.21.89] D TP_0277 carboxyl-terminal protease (ctp) K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D TP_0997 protease IV (sppA) K04773 sppA; protease IV [EC:3.4.21.-] D TP_0982 glpG protein, putative K07059 K07059; rhomboid family protein D TP_0114 Lambda CII stability-governing protein (hflC) K04087 hflC; modulator of FtsH protease HflC D TP_0113 Lambda CII stability-governing protein (hflK) K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases [BR:tpa01003] D TP_0705 penicillin-binding protein (pbp-2) K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] C 01005 Lipopolysaccharide biosynthesis proteins C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:tpa01011] D TP_0029 UDP-N-acetylglucosamine 1-carboxyvinyltransferase (murA) K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D TP_0090 UDP-N-acetylmuramate dehydrogenase (murB) K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D TP_0341 UDP-N-acetylmuramate--alanine ligase (murC) K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D TP_0903 UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D TP_0933 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (murE) K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D TP_0670 D-alanine--D-alanine ligase (ddlA) K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D TP_0681 alanine racemase (alr) K01775 alr; alanine racemase [EC:5.1.1.1] D TP_0406 glutamate racemase (murI) K01776 murI; glutamate racemase [EC:5.1.1.3] D TP_0345 phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D TP_0523 UDP-N-glucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (murG) K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D TP_0516 virulence factor (mviN) K03980 murJ; putative peptidoglycan lipid II flippase D TP_0705 penicillin-binding protein (pbp-2) K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D TP_0500 penicillin-binding protein (pbp-1) K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D TP_0760 penicillin-binding protein (pbp-3) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D TP_0800 serine-type D-Ala-D-Ala carboxypeptidase (dacC) K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D TP_0221 D,D-carboxypeptidase, putative K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D TP_0043 soluble lytic transglycosylase, putative K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D TP_0623 membrane-bound lytic murein transglycosylase D (dniR) K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29] D TP_0491 conserved hypothetical protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D TP_0993 rare lipoprotein A, putative K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D TP_0247 N-acetylmuramoyl-L-alanine amidase (amiA) K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:tpa01004] D TP_0145 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TP_0361 lysophosphatidic acid acyltransferase, putative K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases [BR:tpa01006] D TP_0683 octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D TP_0603 conserved hypothetical protein K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D TP_0637 tRNA delta(2)-isopentenylpyrophosphate transferase (miaA) K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] C 01007 Amino acid related enzymes [BR:tpa01007] D TP_0644 lysyl-tRNA synthetase (lysS-1) K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D TP_0673 glutamyl-tRNA synthetase (gltX) K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D TP_0834 tyrosyl-tRNA synthetase (tyrS) K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D TP_0632 tryptophanyl-tRNA synthetase (trsA) K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D TP_0091 cysteinyl-tRNA synthetase (cysS) K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D TP_0831 arginyl-tRNA synthetase (argS) K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D TP_0798 methionyl-tRNA synthetase (metG) K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D TP_0452 isoleucyl-tRNA synthetase (ileS) K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D TP_1035 valyl-tRNA synthetase (valS) K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D TP_0586 leucyl-tRNA synthetase (leuS) K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D TP_0985 aspartyl-tRNA synthetase (aspS) K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D TP_0609 asparaginyl-tRNA synthetase (asnS) K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D TP_0641 histidyl-tRNA synthetase (hisS) K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D TP_0672 glycyl-tRNA synthetase (glyS) K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D TP_0647 seryl-tRNA synthetase (serS) K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D TP_0160 prolyl-tRNA synthetase (proS) K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D TP_0837 threonyl-tRNA synthetase (thrS) K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D TP_1017 alanyl-tRNA synthetase (alaS) K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D TP_0973 phenylalanyl-tRNA synthetase alpha subunit (pheS) K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D TP_0015 phenylalanyl-tRNA synthetase beta subunit (pheT) K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D TP_0223 aspartate aminotransferase (tpaaT) K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:tpa03000] D TP_0167 cation-activated repressor protein (troR) K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D TP_0357 biotin--acetyl-CoA-carboxylase ligase (birA) K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D TP_0271 chromosome partitioning protein (parB) K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TP_0511 transcription factor (carD) K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D TP_0383 conserved hypothetical protein K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:tpa03021] D TP_0380 DNA repair helicase, putative K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D TP_0212 DNA-directed RNA polymerase, alpha subunit (rpoA) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D TP_0241 DNA-directed RNA polymerase, beta subunit (rpoB) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D TP_0242 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D TP_0701 DNA-directed RNA polymerase, putative K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D TP_0493 RNA polymerase sigma-70 factor (rpoD) K03086 rpoD; RNA polymerase primary sigma factor D TP_1012 RNA polymerase sigma-43 factor (sigA) K03087 rpoS; RNA polymerase nonessential primary-like sigma factor D TP_0092 RNA polymerase sigma-24 factor (rpoE) K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D TP_0111 RNA polymerase sigma-54 factor (rpoN) K03092 rpoN; RNA polymerase sigma-54 factor D TP_0709 RNA polymerase sigma-28 factor K02405 fliA; RNA polymerase sigma factor FliA D TP_0892 N utilization substance protein A (nusA) K02600 nusA; transcription termination/antitermination protein NusA D TP_1015 N utilization substance protein B (nusB) K03625 nusB; transcription antitermination protein NusB D TP_0236 transcription antitermination protein (nusG) K02601 nusG; transcription termination/antitermination protein NusG D TP_0019 transcription elongation factor (greA) K03624 greA; transcription elongation factor GreA D TP_0254 transcription termination factor Rho (rho) K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:tpa03019] D TP_0809 ribonuclease III (rnc) K03685 rnc; ribonuclease III [EC:3.1.26.3] D TP_1018 conserved hypothetical protein K18682 rny; ribonucrease Y [EC:3.1.-.-] D TP_0103 ATP-dependent DNA helicase, putative K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D TP_0817 enolase (eno) K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D TP_0886 polyribonucleotide nucleotidyltransferase (pnp) K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D TP_0254 transcription termination factor Rho (rho) K03628 rho; transcription termination factor Rho D TP_0108 pyrophosphate--fructose 6-phosphate 1-phosphotransferase (pfk) K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D TP_0216 heat shock protein 70 (dnaK) K04043 dnaK; molecular chaperone DnaK D TP_0030 heat shock protein (groEL) K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D TP_0596 polynucleotide adenylyltransferase (pcnB) K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D TP_0657 carbon storage regulator (csrA) K03563 csrA; carbon storage regulator C 03041 Spliceosome C 03011 Ribosome [BR:tpa03011] D TP_0279 ribosomal protein S1 (rpsA) K02945 RP-S1; small subunit ribosomal protein S1 D TP_0606 ribosomal protein S2 (rpsB) K02967 RP-S2; small subunit ribosomal protein S2 D TP_0195 ribosomal protein S3 (rpsC) K02982 RP-S3; small subunit ribosomal protein S3 D TP_0306 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D TP_0206 ribosomal protein S5 (rpsE) K02988 RP-S5; small subunit ribosomal protein S5 D TP_0063 ribosomal protein S6 (rpsF) K02990 RP-S6; small subunit ribosomal protein S6 D TP_0244 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D TP_0203 ribosomal protein S8 (rpsH) K02994 RP-S8; small subunit ribosomal protein S8 D TP_1024 ribosomal protein S9 (rpsI) K02996 RP-S9; small subunit ribosomal protein S9 D TP_0188 ribosomal protein S10 (rpsJ) K02946 RP-S10; small subunit ribosomal protein S10 D TP_0211 ribosomal protein S11 (rpsK) K02948 RP-S11; small subunit ribosomal protein S11 D TP_0243 ribosomal protein S12 (rpsL) K02950 RP-S12; small subunit ribosomal protein S12 D TP_0210 ribosomal protein S13 (rpsM) K02952 RP-S13; small subunit ribosomal protein S13 D TP_0202 ribosomal protein S14 (rpsN) K02954 RP-S14; small subunit ribosomal protein S14 D TP_0887 ribosomal protein S15 (rpsO) K02956 RP-S15; small subunit ribosomal protein S15 D TP_0905 ribosomal protein S16 (rpsP) K02959 RP-S16; small subunit ribosomal protein S16 D TP_0198 ribosomal protein S17 (rpsQ) K02961 RP-S17; small subunit ribosomal protein S17 D TP_0061 ribosomal protein S18 (rpsR) K02963 RP-S18; small subunit ribosomal protein S18 D TP_0193 ribosomal protein S19 (rpsS) K02965 RP-S19; small subunit ribosomal protein S19 D TP_0758 ribosomal protein S21 (rpsU) K02970 RP-S21; small subunit ribosomal protein S21 D TP_0238 ribosomal protein L1 (rplA) K02863 RP-L1; large subunit ribosomal protein L1 D TP_0192 ribosomal protein L2 (rplB) K02886 RP-L2; large subunit ribosomal protein L2 D TP_0189 ribosomal protein L3 (rplC) K02906 RP-L3; large subunit ribosomal protein L3 D TP_0190 ribosomal protein L4 (rplD) K02926 RP-L4; large subunit ribosomal protein L4 D TP_0201 ribosomal protein L5 (rplE) K02931 RP-L5; large subunit ribosomal protein L5 D TP_0204 ribosomal protein L6 (rplF) K02933 RP-L6; large subunit ribosomal protein L6 D TP_0060 ribosomal protein L9 (rplI) K02939 RP-L9; large subunit ribosomal protein L9 D TP_0239 ribosomal protein L10 (rplJ) K02864 RP-L10; large subunit ribosomal protein L10 D TP_0237 ribosomal protein L11 (rplK) K02867 RP-L11; large subunit ribosomal protein L11 D TP_0240 ribosomal protein L7/L12 (rplL) K02935 RP-L7; large subunit ribosomal protein L7/L12 D TP_1025 ribosomal protein L13 (rplM) K02871 RP-L13; large subunit ribosomal protein L13 D TP_0199 ribosomal protein L14 (rplN) K02874 RP-L14; large subunit ribosomal protein L14 D TP_0207 ribosomal protein L15 (rplO) K02876 RP-L15; large subunit ribosomal protein L15 D TP_0196 ribosomal protein L16 (rplP) K02878 RP-L16; large subunit ribosomal protein L16 D TP_0213 ribosomal protein L17 (rplQ) K02879 RP-L17; large subunit ribosomal protein L17 D TP_0205 ribosomal protein L18 (rplR) K02881 RP-L18; large subunit ribosomal protein L18 D TP_0909 ribosomal protein L19 (rplS) K02884 RP-L19; large subunit ribosomal protein L19 D TP_0848 ribosomal protein L20 (rplT) K02887 RP-L20; large subunit ribosomal protein L20 D TP_0745 ribosomal protein L21 (rplU) K02888 RP-L21; large subunit ribosomal protein L21 D TP_0194 ribosomal protein L22 (rplV) K02890 RP-L22; large subunit ribosomal protein L22 D TP_0191 ribosomal protein L23 (rplW) K02892 RP-L23; large subunit ribosomal protein L23 D TP_0200 ribosomal protein L24 (rplX) K02895 RP-L24; large subunit ribosomal protein L24 D TP_0743 ribosomal protein L27 (rpl27) K02899 RP-L27; large subunit ribosomal protein L27 D TP_0362 ribosomal protein L28 (rpmB) K02902 RP-L28; large subunit ribosomal protein L28 D TP_0197 ribosomal protein L29 (rpmC) K02904 RP-L29; large subunit ribosomal protein L29 D TP_0255 ribosomal protein L31 (rpmE) K02909 RP-L31; large subunit ribosomal protein L31 D TP_0807 ribosomal protein L32 (rpmF) K02911 RP-L32; large subunit ribosomal protein L32 D TP_0234 ribosomal protein L33 (rpmG) K02913 RP-L33; large subunit ribosomal protein L33 D TP_0951 ribosomal protein L34 (rpmH) K02914 RP-L34; large subunit ribosomal protein L34 D TP_0849 ribosomal protein L35 (rpmI) K02916 RP-L35; large subunit ribosomal protein L35 D TP_0209 ribosomal protein L36 (rpmJ-1) K02919 RP-L36; large subunit ribosomal protein L36 D TP_0590 ribosomal protein L36 (rpmJ-2) K02919 RP-L36; large subunit ribosomal protein L36 D TP_0372 general stress protein (ctc) K02897 RP-L25; large subunit ribosomal protein L25 D TP_r01 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TP_r04 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TP_r02 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D TP_r05 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:tpa03009] D TP_0809 ribonuclease III (rnc) K03685 rnc; ribonuclease III [EC:3.1.26.3] D TP_0541 GTP-binding protein (era) K03595 era; GTPase D TP_0892 N utilization substance protein A (nusA) K02600 nusA; transcription termination/antitermination protein NusA D TP_1015 N utilization substance protein B (nusB) K03625 nusB; transcription antitermination protein NusB D TP_0236 transcription antitermination protein (nusG) K02601 nusG; transcription termination/antitermination protein NusG D TP_0337 dimethyladenosine transferase (ksgA) K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D TP_0032 conserved hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D TP_0276 conserved hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D TP_0946 glucose-inhibited division protein B (gidB) K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D TP_0384 conserved hypothetical protein K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D TP_0975 conserved hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D TP_0109 rRNA methylase, putative K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D TP_0682 cell division protein (ftsJ) K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D TP_0068 conserved hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D TP_0459 conserved hypothetical protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D TP_0231 conserved hypothetical protein K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D TP_0339 conserved hypothetical protein K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D TP_0907 conserved hypothetical protein K02860 rimM; 16S rRNA processing protein RimM D TP_0689 GTP-binding protein K03977 engA; GTPase D TP_0182 conserved hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D TP_0890 ribosome-binding factor A (rbfA) K02834 rbfA; ribosome-binding factor A D TP_0893 conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP D TP_0738 conserved hypothetical protein K09710 ybeB; ribosome-associated protein D TP_0650 conserved hypothetical protein K07042 ybeY; probable rRNA maturation factor D TP_0124 conserved hypothetical GTP-binding protein K06942 ychF; ribosome-binding ATPase C 03016 Transfer RNA biogenesis [BR:tpa03016] D TP_0819 conserved hypothetical protein K00784 rnz; ribonuclease Z [EC:3.1.26.11] D TP_0270 polynucleotide adenylyltransferase (pcnA) K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D TP_0673 glutamyl-tRNA synthetase (gltX) K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D TP_0160 prolyl-tRNA synthetase (proS) K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D TP_0452 isoleucyl-tRNA synthetase (ileS) K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D TP_0586 leucyl-tRNA synthetase (leuS) K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D TP_0798 methionyl-tRNA synthetase (metG) K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D TP_0831 arginyl-tRNA synthetase (argS) K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D TP_0985 aspartyl-tRNA synthetase (aspS) K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D TP_1017 alanyl-tRNA synthetase (alaS) K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D TP_0609 asparaginyl-tRNA synthetase (asnS) K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D TP_0672 glycyl-tRNA synthetase (glyS) K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D TP_0837 threonyl-tRNA synthetase (thrS) K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D TP_0647 seryl-tRNA synthetase (serS) K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D TP_0091 cysteinyl-tRNA synthetase (cysS) K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D TP_1035 valyl-tRNA synthetase (valS) K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D TP_0641 histidyl-tRNA synthetase (hisS) K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D TP_0973 phenylalanyl-tRNA synthetase alpha subunit (pheS) K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D TP_0015 phenylalanyl-tRNA synthetase beta subunit (pheT) K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D TP_0834 tyrosyl-tRNA synthetase (tyrS) K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D TP_0632 tryptophanyl-tRNA synthetase (trsA) K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D TP_0464 conserved hypothetical protein K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D TP_0830 pseudouridylate synthase (hisT) K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D TP_0889 tRNA pseudouridine 55 synthase (truB) K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D TP_0863 nitrogen fixation protein (nifS-2) K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D TP_0182 conserved hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D TP_0637 tRNA delta(2)-isopentenylpyrophosphate transferase (miaA) K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D TP_0550 thiophene and furan oxidation protein (thdF) K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D TP_0044 glucose inhibited division protein A (gidA) K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D TP_0805 exoribonuclease II (rnb) K01147 rnb; exoribonuclease II [EC:3.1.13.1] D TP_0644 lysyl-tRNA synthetase (lysS-1) K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D TP_0754 conserved hypothetical protein K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D TP_0269 conserved hypothetical protein K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5] D TP_0908 tRNA (guanine-N1)-methyltransferase (trmD) K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D TP_0559 conserved hypothetical protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D TP_0373 conserved hypothetical protein K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D TP_0876 conserved hypothetical protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D TP_0875 conserved hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D TP_0886 polyribonucleotide nucleotidyltransferase (pnp) K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:tpa03012] D TP_0891 translation initiation factor 2 (infB) K02519 infB; translation initiation factor IF-2 D TP_0850 translation initiation factor 3 (infC) K02520 infC; translation initiation factor IF-3 D TP_0605 translation elongation factor TS (tsf) K02357 tsf; elongation factor Ts D TP_0767 translation elongation factor G (fusA-2) K02355 fusA; elongation factor G D TP_0450 translation elongation factor G (fusA-1) K02355 fusA; elongation factor G D TP_0051 peptide chain release factor 1 (prfA) K02835 prfA; peptide chain release factor 1 D TP_0604 ribosome recycling factor K02838 frr; ribosome recycling factor D TP_0052 protoporphyrinogen oxidase (hemK) K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D TP_1011 peptidyl-tRNA hydrolase (pth) K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D TP_0097 translation initiation factor 1 (infA) K02518 infA; translation initiation factor IF-1 D TP_0525 translation elongation factor P (efp) K02356 efp; elongation factor P D TP_1040 lysyl-tRNA synthetase (lysS-2) K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-] D TP_0576 peptide chain release factor 2 (prfB) K02836 prfB; peptide chain release factor 2 C 03110 Chaperones and folding catalysts [BR:tpa03110] D TP_0801 ATP-dependent Clp protease subunit A (clpA) K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA D TP_0071 ATP-dependent Clp protease subunit B (clpB) K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D TP_0549 ATPase (clpC) K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC D TP_0508 ATP-dependent Clp protease subunit X (clpX) K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D TP_0984 heat shock protein 90 (htpG) K04079 HSP90A; molecular chaperone HtpG D TP_0216 heat shock protein 70 (dnaK) K04043 dnaK; molecular chaperone DnaK D TP_0030 heat shock protein (groEL) K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D TP_0215 grpE protein (grpE) K03687 GRPE; molecular chaperone GrpE D TP_1013 chaperonin (groES) K04078 groES; chaperonin GroES D TP_0765 cell division protein (ftsH) K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D TP_0947 peptidyl-prolyl cis-trans isomerase, cyclophilin-binding (cyp) K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D TP_0862 peptidyl-prolyl cis-trans isomerase, FKBP-type, 22 kDa (fklB) K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8] D TP_0349 peptidyl-prolyl cis-trans isomerase, FKBP-type (slyD) K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D TP_0919 thioredoxin (trx) K03671 TXN; thioredoxin C 04131 Membrane trafficking [BR:tpa04131] D TP_1010 nucleoside-diphosphate kinase (ndk) K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D TP_0505 hexokinase (hxk) K00844 HK; hexokinase [EC:2.7.1.1] D TP_0168 phosphoglycerate mutase (pgm) K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D TP_0984 heat shock protein 90 (htpG) K04079 HSP90A; molecular chaperone HtpG C 04121 Ubiquitin system [BR:tpa04121] C 03051 Proteasome [BR:tpa03051] D TP_0984 heat shock protein 90 (htpG) K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:tpa03032] D TP_0353 ribonuclease H (rnhA) K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D TP_0001 chromosomal replication initiator protein (dnaA) K02313 dnaA; chromosomal replication initiator protein D TP_0058 replicative DNA helicase (dnaB) K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D TP_0492 DNA primase (dnaG) K02316 dnaG; DNA primase [EC:2.7.7.101] D TP_0062 single-strand DNA binding protein (ssb) K03111 ssb; single-strand DNA-binding protein D TP_0669 DNA polymerase III, subunit alpha (dnaE) K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D TP_0002 DNA polymerase III, subunit beta (dnaN) K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D TP_0588 conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D TP_0643 DNA polymerase III, subunit epsilon (dnaQ) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TP_0521 DNA polymerase III, gamma and tau subunits, putative K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TP_1005 DNA polymerase III, subunits gamma and tau (dnaH) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TP_0634 DNA ligase (lig) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TP_0810 DNA adenine methyltransferase (dam) K06223 dam; DNA adenine methylase [EC:2.1.1.72] D TP_0005 DNA gyrase, subunit A (gyrA) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D TP_1006 DNA gyrase, subunit B (gyrB) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D TP_0394 DNA topoisomerase I (topA) K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:tpa03036] D TP_0809 ribonuclease III (rnc) K03685 rnc; ribonuclease III [EC:3.1.26.3] D TP_0001 chromosomal replication initiator protein (dnaA) K02313 dnaA; chromosomal replication initiator protein D TP_1038 bacterioferrin (TpF1) K04047 dps; starvation-inducible DNA-binding protein D TP_0367 chromosome segregation protein, putative K03529 smc; chromosome segregation protein D TP_0691 conserved hypothetical protein K05896 scpA; segregation and condensation protein A D TP_0458 conserved hypothetical protein K06024 scpB; segregation and condensation protein B D TP_0389 cell division protein (ftsA) K03590 ftsA; cell division protein FtsA D TP_0760 penicillin-binding protein (pbp-3) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D TP_0999 cell division protein, putative K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D TP_0385 conserved hypothetical protein K03586 ftsL; cell division protein FtsL D TP_0388 cell division protein (ftsQ) K03589 ftsQ; cell division protein FtsQ D TP_0387 cell division protein (ftsW) K03588 ftsW; cell division protein FtsW D TP_0390 cell division protein (ftsZ) K03531 ftsZ; cell division protein FtsZ D TP_0247 N-acetylmuramoyl-L-alanine amidase (amiA) K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D TP_0497 rod shape-determining protein (mreB) K03569 mreB; rod shape-determining protein MreB and related proteins D TP_0498 rod shape-determining protein (mreC) K03570 mreC; rod shape-determining protein MreC D TP_0499 rod shape-determining protein (mreD) K03571 mreD; rod shape-determining protein MreD D TP_0501 rod shape-determining protein (rodA) K05837 rodA; rod shape determining protein RodA D TP_0272 SpoOJ regulator (soj) K03496 parA; chromosome partitioning protein D TP_0271 chromosome partitioning protein (parB) K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TP_0044 glucose inhibited division protein A (gidA) K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D TP_0946 glucose-inhibited division protein B (gidB) K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D TP_0391 integrase/recombinase (codV) K04763 xerD; integrase/recombinase XerD C 03400 DNA repair and recombination proteins [BR:tpa03400] D TP_0141 methylated-DNA-protein-cysteine S-methyltransferase (dat) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D TP_0343 A/G-specific adenine glycosylase, putative K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D TP_0775 endonuclease III (nth) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D TP_0380 DNA repair helicase, putative K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D TP_0885 deoxyuridine 5'-triphosphate nucleotidohydrolase (dut) K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D TP_0229 DNA polymerase, bacteriophage-type K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D TP_0125 exodeoxyribonuclease (exoA) K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D TP_0704 single-stranded-DNA-specific exonuclease (recJ) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D TP_0634 DNA ligase (lig) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TP_0514 excinuclease ABC, subunit A (uvrA) K03701 uvrA; excinuclease ABC subunit A D TP_0116 excinuclease ABC, subunit B (uvrB) K03702 uvrB; excinuclease ABC subunit B D TP_0472 excinuclease ABC, subunit C (uvrC) K03703 uvrC; excinuclease ABC subunit C D TP_1028 DNA helicase II (uvrD) K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TP_0102 rep helicase, single-stranded DNA-dependent ATPase (rep) K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TP_0241 DNA-directed RNA polymerase, beta subunit (rpoB) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D TP_0242 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D TP_0212 DNA-directed RNA polymerase, alpha subunit (rpoA) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D TP_0701 DNA-directed RNA polymerase, putative K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D TP_0344 transcription-repair coupling factor (trcF) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D TP_0328 DNA mismatch repair protein (mutS) K03555 mutS; DNA mismatch repair protein MutS D TP_0303 DNA mismatch repair protein (mutL) K03572 mutL; DNA mismatch repair protein MutL D TP_0669 DNA polymerase III, subunit alpha (dnaE) K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D TP_0002 DNA polymerase III, subunit beta (dnaN) K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D TP_0588 conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D TP_0643 DNA polymerase III, subunit epsilon (dnaQ) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TP_0521 DNA polymerase III, gamma and tau subunits, putative K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TP_1005 DNA polymerase III, subunits gamma and tau (dnaH) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TP_0062 single-strand DNA binding protein (ssb) K03111 ssb; single-strand DNA-binding protein D TP_0810 DNA adenine methyltransferase (dam) K06223 dam; DNA adenine methylase [EC:2.1.1.72] D TP_0692 recA protein (recA) K03553 recA; recombination protein RecA D TP_0543 Holliday junction DNA helicase (ruvA) K03550 ruvA; holliday junction DNA helicase RuvA D TP_0162 Holliday junction DNA helicase (ruvB) K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D TP_0517 Holliday junction nuclease (ruvC) K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D TP_0230 primosomal protein N (priA) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D TP_0627 exonuclease (sbcC) K03546 sbcC; DNA repair protein SbcC/Rad50 D TP_0626 exonuclease, putative K03547 sbcD; DNA repair protein SbcD/Mre11 D TP_1022 DNA repair protein (sms) K04485 radA; DNA repair protein RadA/Sms D TP_0003 recF protein (recF) K03629 recF; DNA replication and repair protein RecF D TP_0687 DNA recombinase (recG) K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D TP_1004 recombination protein (recR) K06187 recR; recombination protein RecR D TP_0442 DNA repair protein (recN) K03631 recN; DNA repair protein RecN (Recombination protein N) D TP_0005 DNA gyrase, subunit A (gyrA) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D TP_1006 DNA gyrase, subunit B (gyrB) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D TP_0394 DNA topoisomerase I (topA) K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D TP_0103 ATP-dependent DNA helicase, putative K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D TP_1023 recX protein (recX) K03565 recX; regulatory protein D TP_1008 ribonucleoside-diphosphate reductase, subunit alpha (nrdA) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TP_0053 ribonucleoside-diphosphate reductase, subunit beta (nrdB) K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D TP_0436 conserved hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] C 03029 Mitochondrial biogenesis [BR:tpa03029] D TP_0891 translation initiation factor 2 (infB) K02519 infB; translation initiation factor IF-2 D TP_0850 translation initiation factor 3 (infC) K02520 infC; translation initiation factor IF-3 D TP_0605 translation elongation factor TS (tsf) K02357 tsf; elongation factor Ts D TP_0767 translation elongation factor G (fusA-2) K02355 fusA; elongation factor G D TP_0450 translation elongation factor G (fusA-1) K02355 fusA; elongation factor G D TP_0541 GTP-binding protein (era) K03595 era; GTPase D TP_0834 tyrosyl-tRNA synthetase (tyrS) K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D TP_0586 leucyl-tRNA synthetase (leuS) K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D TP_0985 aspartyl-tRNA synthetase (aspS) K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D TP_0672 glycyl-tRNA synthetase (glyS) K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D TP_0831 arginyl-tRNA synthetase (argS) K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D TP_1020 glu-tRNA amidotransferase, subunit A (gatA) K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D TP_1021 glu-tRNA amidotransferase, subunit B (gatB) K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D TP_1019 glu-tRNA amidotransferase, subunit C (gatC) K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D TP_0062 single-strand DNA binding protein (ssb) K03111 ssb; single-strand DNA-binding protein D TP_0326 outer membrane protein K07277 SAM50; outer membrane protein insertion porin family D TP_0216 heat shock protein 70 (dnaK) K04043 dnaK; molecular chaperone DnaK D TP_0215 grpE protein (grpE) K03687 GRPE; molecular chaperone GrpE D TP_0030 heat shock protein (groEL) K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D TP_1013 chaperonin (groES) K04078 groES; chaperonin GroES D TP_0863 nitrogen fixation protein (nifS-2) K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D TP_0949 membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D TP_0984 heat shock protein 90 (htpG) K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:tpa02000] D TP_0144 thiamine ABC transporter, thiamine-binding periplasmic protein, putative K02064 thiB; thiamine transport system substrate-binding protein D TP_0143 thiamine ABC transporter, permease protein, putative K02063 thiP; thiamine transport system permease protein D TP_0142 thiamine ABC transporter, ATP-binding protein, putative K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D TP_0655 spermidine/putrescine ABC transporter, periplasmic binding protein (potD) K11069 potD; spermidine/putrescine transport system substrate-binding protein D TP_0654 spermidine/putrescine ABC transporter, permease protein (potC) K11070 potC; spermidine/putrescine transport system permease protein D TP_0653 spermidine/putrescine ABC transporter, permease protein (potB) K11071 potB; spermidine/putrescine transport system permease protein D TP_0652 spermidine/putrescine ABC transporter, ATP-binding protein (potA) K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D TP_0804 sugar ABC transporter, ATP-binding protein (ugpC) K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D TP_0684 methylgalactoside ABC transporter, periplasmic galactose-binding protein (mglB-2) K10540 mglB; methyl-galactoside transport system substrate-binding protein D TP_0545 methylgalactoside ABC transporter, periplasmic galactose-binding protein (mglB-1) K10540 mglB; methyl-galactoside transport system substrate-binding protein D TP_0686 methylgalactoside ABC transporter, permease protein (mglC) K10541 mglC; methyl-galactoside transport system permease protein D TP_0685 methylgalactoside ABC transporter, ATP binding protein (mglA) K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11] D TP_0319 membrane lipoprotein (tmpC) K07335 bmpA; basic membrane protein A and related proteins D TP_0322 ribose/galactose ABC transporter, permease protein (rbsC-1) K23535 nupB; general nucleoside transport system permease protein D TP_0323 ribose/galactose ABC transporter, permease protein (rbsC-2) K23536 nupC; general nucleoside transport system permease protein D TP_0321 ribose/galactose ABC transporter, ATP-binding protein (rbsA-2) K23537 nupA; general nucleoside transport system ATP-binding protein D TP_0298 exported protein (tpn38b) K23510 rfuA; riboflavin transport system substrate-binding protein D TP_0301 conserved hypothetical integral membrane protein K23511 rfuC; riboflavin transport system permease protein D TP_0302 conserved hypothetical integral membrane protein K23512 rfuD; riboflavin transport system permease protein D TP_0300 ribose/galactose ABC transporter, ATP-binding protein (rbsA-1) K23513 rfuB; riboflavin transport system ATP-binding protein D TP_0737 sugar ABC transporter, periplasmic binding protein (msmE) K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D TP_0074 sugar ABC transporter, periplasmic binding protein (y4oP) K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D TP_0075 sugar ABC transporter, permease protein (y4oQ) K02025 ABC.MS.P; multiple sugar transport system permease protein D TP_0076 sugar ABC transporter, permease protein (y4oR) K02026 ABC.MS.P1; multiple sugar transport system permease protein D TP_0821 lipoprotein (tpn32) K02073 metQ; D-methionine transport system substrate-binding protein D TP_0119 amino acid ABC transporter, permease protein (yaeE) K02072 metI; D-methionine transport system permease protein D TP_0120 amino acid ABC transporter, ATP-binding protein (abc) K02071 metN; D-methionine transport system ATP-binding protein D TP_0308 amino acid ABC transporter, periplasmic binding protein (hisJ) K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D TP_0309 amino acid ABC transporter, periplasmic binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D TP_0585 oligopeptide ABC transporter, periplasmic binding protein (oppA) K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TP_0034 ABC transporter, periplasmic binding protein K09815 znuA; zinc transport system substrate-binding protein D TP_0036 ABC transporter, permease protein K09816 znuB; zinc transport system permease protein D TP_0035 ABC transporter, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D TP_0163 ABC transporter, periplasmic binding protein (troA) K11707 troA; manganese/zinc/iron transport system substrate-binding protein D TP_0165 ABC transporter, permease protein (troC) K11708 troC; manganese/zinc/iron transport system permease protein D TP_0166 ABC transporter, permease protein (troD) K11709 troD; manganese/zinc/iron transport system permease protein D TP_0164 ABC transporter, ATP-binding protein (troB) K11710 troB; manganese/zinc/iron transport system ATP- binding protein [EC:7.2.2.5] D TP_0228 biotin synthase, putative K03523 bioY; biotin transport system substrate-specific component D TP_0226 predicted coding region TP0226 K16783 bioN; biotin transport system permease protein D TP_0227 cobalt ABC transporter, ATP-binding protein K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-] D TP_0884 conserved hypothetical integral membrane protein K07091 lptF; lipopolysaccharide export system permease protein D TP_0883 conserved hypothetical integral membrane protein K11720 lptG; lipopolysaccharide export system permease protein D TP_0786 ABC transporter, ATP-binding protein, putative K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D TP_0880 membrane spanning protein, putative K25151 gldF; gliding motility-associated transport system permease protein D TP_0881 ABC transporter, ATP-binding protein (natA) K25152 gldA; gliding motility-associated transport system ATP-binding protein D TP_0879 conserved hypothetical protein K25153 gldG; gliding motility-associatede transport system auxiliary component D TP_0582 conserved hypothetical integral membrane protein K09808 lolC_E; lipoprotein-releasing system permease protein D TP_0580 conserved hypothetical integral membrane protein K09808 lolC_E; lipoprotein-releasing system permease protein D TP_0581 ABC transporter, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D TP_0962 conserved hypothetical integral membrane protein K02004 ABC.CD.P; putative ABC transport system permease protein D TP_0963 conserved hypothetical integral membrane protein K02004 ABC.CD.P; putative ABC transport system permease protein D TP_0964 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D TP_0611 ABC transporter, ATP-binding protein K09013 sufC; Fe-S cluster assembly ATP-binding protein D TP_0901 conserved hypothetical integral membrane protein K26937 dinF; MATE family, multidrug efflux pump D TP_0589 phosphocarrier protein HPr (ptsH) K02784 ptsH; phosphocarrier protein HPr D TP_0755 PTS system, nitrogen regulatory IIA component (ptsN-2) K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D TP_0085 PTS system, nitrogen regulatory IIA component (ptsN-1) K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D TP_0917 Mg2+ transport protein (mgtE) K06213 mgtE; magnesium transporter D TP_0725 flagellar motor rotation protein (motA) K02556 motA; chemotaxis protein MotA D TP_0724 flagellar motor rotation protein (motB) K02557 motB; chemotaxis protein MotB D TP_0027 hemolysin, putative K03699 tlyC; magnesium and cobalt exporter, CNNM family D TP_0326 outer membrane protein K07277 SAM50; outer membrane protein insertion porin family D TP_0785 conserved hypothetical protein K09774 lptA; lipopolysaccharide export system protein LptA D TP_0649 hemolysin (tlyC) K06189 corC; hemolysin (HlyC) family protein D TP_1034 conserved hypothetical integral membrane protein K07301 yrbG; cation:H+ antiporter D TP_0140 K+ transport protein (ntpJ) K03498 trkH; trk/ktr system potassium uptake protein D TP_0513 K+ transport protein (trkA) K03499 trkA; trk/ktr system potassium uptake protein D TP_0139 conserved hypothetical protein K03499 trkA; trk/ktr system potassium uptake protein D TP_0024 conserved hypothetical protein K03499 trkA; trk/ktr system potassium uptake protein D TP_0771 conserved hypothetical integral membrane protein K03324 yjbB; phosphate:Na+ symporter D TP_0516 virulence factor (mviN) K03980 murJ; putative peptidoglycan lipid II flippase D TP_0387 cell division protein (ftsW) K03588 ftsW; cell division protein FtsW D TP_0972 conserved hypothetical integral membrane protein K07243 FTR; high-affinity iron transporter D TP_0971 membrane antigen, pathogen-specific (tpd) K07230 p19; periplasmic iron binding protein D TP_0057 oxaloacetate decarboxylase, subunit beta (oadB) K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D TP_0056 oxaloacetate decarboxylase, subunit alpha (oadA) K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D TP_0055 predicted coding region TP0055 K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma D TP_0101 cytochrome c biogenesis protein (ccdA) K06196 ccdA; cytochrome c-type biogenesis protein D TP_0774 Mg2+ transport protein (mgtC) K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein C 02044 Secretion system [BR:tpa02044] D TP_0364 purine-binding chemotaxis protein (cheW-1) K02659 pilI; twitching motility protein PilI D TP_0668 conserved hypothetical integral membrane protein K02221 yggT; YggT family protein D TP_0274 deoxycytidylate deaminase, putative K01493 comEB; dCMP deaminase [EC:3.5.4.12] D TP_0714 flagellar biosynthesis protein (flhA) K02400 flhA; flagellar biosynthesis protein FlhA D TP_0715 flagellar biosynthetic protein (flhB) K02401 flhB; flagellar biosynthesis protein FlhB D TP_0911 conserved hypothetical protein K04061 flhB2; flagellar biosynthesis protein D TP_0399 flagellar basal-body M ring protein (fliF) K02409 fliF; flagellar M-ring protein FliF D TP_0401 flagellar assembly protein (fliH) K02411 fliH; flagellar assembly protein FliH D TP_0402 flagellum-specific ATP synthase (fliI) K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D TP_0720 flagellar motor switch protein (fliY) K02417 fliN; flagellar motor switch protein FliN D TP_0719 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ D TP_0718 flagellar biosynthetic protein (fliP) K02419 fliP; flagellar biosynthesis protein FliP D TP_0717 flagellar biosynthetic protein (fliQ) K02420 fliQ; flagellar biosynthesis protein FliQ D TP_0716 flagellar biosynthetic protein (fliR) K02421 fliR; flagellar biosynthesis protein FliR D TP_0379 preprotein translocase subunit (secA) K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D TP_0410 protein-export membrane protein (secD) K03072 secD; preprotein translocase subunit SecD D TP_0235 preprotein translocase subunit (secE) K03073 secE; preprotein translocase subunit SecE D TP_0411 protein-export membrane protein (secF) K03074 secF; preprotein translocase subunit SecF D TP_0536 predicted coding region TP0536 K03075 secG; preprotein translocase subunit SecG D TP_0208 preprotein translocase subunit (secY) K03076 secY; preprotein translocase subunit SecY D TP_0416 signal recognition particle protein (ffh) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D TP_0578 cell division protein (ftsY) K03110 ftsY; fused signal recognition particle receptor D TP_0949 membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase C 02042 Bacterial toxins [BR:tpa02042] D TP_0027 hemolysin, putative K03699 tlyC; magnesium and cobalt exporter, CNNM family D TP_1037 hemolysin III (hlyIII) K11068 hlyIII; hemolysin III C 02022 Two-component system [BR:tpa02022] D TP_0363 chemotaxis histidine kinase (cheA) K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D TP_0366 chemotaxis response regulator (cheY) K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D TP_0631 protein-glutamate methylesterase (cheB) K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] C 02035 Bacterial motility proteins [BR:tpa02035] D TP_0363 chemotaxis histidine kinase (cheA) K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D TP_0439 purine-binding chemotaxis protein (cheW-2) K03408 cheW; purine-binding chemotaxis protein CheW D TP_0365 chemotaxis protein (cheX) K03409 cheX; chemotaxis protein CheX D TP_0630 chemotaxis protein methyltransferase (cheR) K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D TP_0631 protein-glutamate methylesterase (cheB) K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D TP_0366 chemotaxis response regulator (cheY) K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D TP_0488 methyl-accepting chemotaxis protein (mcp2-1) K03406 mcp; methyl-accepting chemotaxis protein D TP_0040 methyl-accepting chemotaxis protein (mcp1) K03406 mcp; methyl-accepting chemotaxis protein D TP_0639 methyl-accepting chemotaxis protein (mcp2-2) K03406 mcp; methyl-accepting chemotaxis protein D TP_0640 methyl-accepting chemotaxis protein (mcp2-3) K03406 mcp; methyl-accepting chemotaxis protein D TP_0401 flagellar assembly protein (fliH) K02411 fliH; flagellar assembly protein FliH D TP_0402 flagellum-specific ATP synthase (fliI) K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D TP_0403 flagellar protein, putative K02413 fliJ; flagellar protein FliJ D TP_0719 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ D TP_0718 flagellar biosynthetic protein (fliP) K02419 fliP; flagellar biosynthesis protein FliP D TP_0717 flagellar biosynthetic protein (fliQ) K02420 fliQ; flagellar biosynthesis protein FliQ D TP_0716 flagellar biosynthetic protein (fliR) K02421 fliR; flagellar biosynthesis protein FliR D TP_0714 flagellar biosynthesis protein (flhA) K02400 flhA; flagellar biosynthesis protein FlhA D TP_0715 flagellar biosynthetic protein (flhB) K02401 flhB; flagellar biosynthesis protein FlhB D TP_0026 flagellar motor switch protein (fliG-1) K02410 fliG; flagellar motor switch protein FliG D TP_0400 flagellar motor switch protein (fliG-2) K02410 fliG; flagellar motor switch protein FliG D TP_0721 flagellar motor switch protein (fliM) K02416 fliM; flagellar motor switch protein FliM D TP_0720 flagellar motor switch protein (fliY) K02417 fliN; flagellar motor switch protein FliN D TP_0399 flagellar basal-body M ring protein (fliF) K02409 fliF; flagellar M-ring protein FliF D TP_0722 flagellar protein (fliL) K02415 fliL; flagellar protein FliL D TP_0378 flagellar protein, putative K02415 fliL; flagellar protein FliL D TP_0398 flagellar hook-basal body complex protein (fliE) K02408 fliE; flagellar hook-basal body complex protein FliE D TP_0396 flagellar basal-body rod protein (flgB) K02387 flgB; flagellar basal-body rod protein FlgB D TP_0397 flagellar basal-body rod protein (flgC) K02388 flgC; flagellar basal-body rod protein FlgC D TP_0728 flagellar hook assembly scaffolding protein (flgD) K02389 flgD; flagellar basal-body rod modification protein FlgD D TP_0961 flagellar basal-body rod protein (flgG-2) K02391 flgF; flagellar basal-body rod protein FlgF D TP_0960 flagellar basal-body rod protein (flgG-1) K02392 flgG; flagellar basal-body rod protein FlgG D TP_0959 predicted coding region TP0959 K02395 flgJ; peptidoglycan hydrolase FlgJ D TP_0727 flagellar hook protein (flgE) K02390 flgE; flagellar hook protein FlgE D TP_0660 flagellar hook-associated protein 1 (flgK) K02396 flgK; flagellar hook-associated protein 1 D TP_0659 flagellar hook-associated protein 3 (flgL) K02397 flgL; flagellar hook-associated protein 3 FlgL D TP_0792 flagellar filament 33 kDa core protein (flaB2) K02406 fliC; flagellin D TP_0868 flagellar filament 34.5 kDa core protein (flaB1) K02406 fliC; flagellin D TP_0870 flagellar filament 31 kDa core protein (flaB3) K02406 fliC; flagellin D TP_0872 flagellar filament cap protein (fliD) K02407 fliD; flagellar hook-associated protein 2 D TP_0943 flagellar protein (fliS) K02422 fliS; flagellar secretion chaperone FliS D TP_0709 RNA polymerase sigma-28 factor K02405 fliA; RNA polymerase sigma factor FliA D TP_0725 flagellar motor rotation protein (motA) K02556 motA; chemotaxis protein MotA D TP_0724 flagellar motor rotation protein (motB) K02557 motB; chemotaxis protein MotB D TP_0658 transmembrane protein, putative K13626 fliW; flagellar assembly factor FliW D TP_0567 conserved hypothetical protein K02383 flbB; flagellar protein FlbB D TP_0726 flagellar protein (flbD) K02385 flbD; flagellar protein FlbD D TP_0713 flagellar-associated GTP-binding protein (flhF) K02404 flhF; flagellar biosynthesis protein FlhF D TP_0853 ATP-binding protein (ylxH-2) K04562 flhG; flagellar biosynthesis protein FlhG D TP_0712 ATP-binding protein (ylxH-1) K04562 flhG; flagellar biosynthesis protein FlhG D TP_0364 purine-binding chemotaxis protein (cheW-1) K02659 pilI; twitching motility protein PilI C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:tpa04812] D TP_0497 rod shape-determining protein (mreB) K03569 mreB; rod shape-determining protein MreB and related proteins D TP_0390 cell division protein (ftsZ) K03531 ftsZ; cell division protein FtsZ D TP_0389 cell division protein (ftsA) K03590 ftsA; cell division protein FtsA D TP_0272 SpoOJ regulator (soj) K03496 parA; chromosome partitioning protein D TP_0271 chromosome partitioning protein (parB) K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:tpa04147] D TP_0984 heat shock protein 90 (htpG) K04079 HSP90A; molecular chaperone HtpG D TP_0817 enolase (eno) K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D TP_0538 phosphoglycerate kinase (pgk) K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D TP_0947 peptidyl-prolyl cis-trans isomerase, cyclophilin-binding (cyp) K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D TP_0030 heat shock protein (groEL) K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D TP_0216 heat shock protein 70 (dnaK) K04043 dnaK; molecular chaperone DnaK D TP_0475 glucose-6-phosphate isomerase (gpi) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D TP_0145 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TP_0595 adenylate kinase (adk) K00939 adk; adenylate kinase [EC:2.7.4.3] D TP_1039 adenine phosphoribosyltransferase (apt) K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D TP_0418 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D TP_0478 glucose-6-phosphate 1-dehydrogenase (zwf) K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D TP_0537 triosephosphate isomerase (tpi) K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D TP_0168 phosphoglycerate mutase (pgm) K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] C 02048 Prokaryotic defense system [BR:tpa02048] D TP_0810 DNA adenine methyltransferase (dam) K06223 dam; DNA adenine methylase [EC:2.1.1.72] D TP_0390 cell division protein (ftsZ) K03531 ftsZ; cell division protein FtsZ D TP_0497 rod shape-determining protein (mreB) K03569 mreB; rod shape-determining protein MreB and related proteins D TP_0673 glutamyl-tRNA synthetase (gltX) K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D TP_0863 nitrogen fixation protein (nifS-2) K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules [BR:tpa04090] C 01504 Antimicrobial resistance genes [BR:tpa01504] D TP_0221 D,D-carboxypeptidase, putative K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:tpa00537] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:tpa03100] D TP_t45 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D TP_t41 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D TP_t15 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D TP_t30 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TP_t03 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TP_t31 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TP_t26 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TP_t35 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TP_t24 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D TP_t28 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D TP_t25 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D TP_t06 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D TP_t18 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D TP_t07 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D TP_t08 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D TP_t23 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D TP_t17 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D TP_t32 tRNA-His K14226 tRNA-His; tRNA His D TP_t12 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D TP_t22 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TP_t10 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TP_t44 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TP_t40 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TP_t16 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TP_t39 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D TP_t21 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D TP_t37 tRNA-Met K14230 tRNA-Met; tRNA Met D TP_t11 tRNA-Met K14230 tRNA-Met; tRNA Met D TP_t29 tRNA-Met K14230 tRNA-Met; tRNA Met D TP_t33 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D TP_t34 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D TP_t38 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D TP_t27 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D TP_t04 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TP_t01 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TP_t02 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TP_t05 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TP_t13 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D TP_t42 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D TP_t19 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D TP_t14 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D TP_t20 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D TP_t36 tRNA-Val K14237 tRNA-Val; tRNA Val D TP_t43 tRNA-Val K14237 tRNA-Val; tRNA Val D TP_t09 tRNA-Val K14237 tRNA-Val; tRNA Val D TP_r01 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TP_r04 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TP_r02 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D TP_r05 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D TP_0633 protein-methionine-S-oxide reductase (msrA) K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12] D TP_0509 alkyl hydroperoxide reductase (ahpC) K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26] D TP_0736 hydrogenase, gamma chain (hydG) K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D TP_0252 apolipoprotein N-acyltransferase, putative K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D TP_0417 apolipoprotein N-acyltransferase (cutE) K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D TP_0852 prolipoprotein diacylglyceryl transferase (lgt) K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D TP_0796 conserved hypothetical protein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D TP_0902 carboxylesterase (est) K03928 yvaK; carboxylesterase [EC:3.1.1.1] D TP_0156 conserved hypothetical protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D TP_0651 conserved hypothetical integral membrane protein K07037 pgpH; cyclic-di-AMP phosphodiesterase PgpH [EC:3.1.4.-] D TP_0994 conserved hypothetical protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D TP_0979 conserved hypothetical protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D TP_0757 polypeptide deformylase (def) K01462 PDF; peptide deformylase [EC:3.5.1.88] C 99981 Carbohydrate metabolism C 99982 Energy metabolism D TP_0615 nitrogen fixation protein (nifU) K04488 iscU; nitrogen fixation protein NifU and related proteins C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism C 99986 Glycan metabolism C 99987 Cofactor metabolism C 99988 Secondary metabolism C 99999 Others B B 09192 Unclassified: genetic information processing C 99973 Transcription D TP_0924 tex protein (tex) K06959 tex; protein Tex C 99974 Translation C 99975 Protein processing D TP_0506 trigger factor (tig) K03545 tig; trigger factor C 99976 Replication and repair D TP_0913 conserved hypothetical protein K07460 yraN; putative endonuclease D TP_0393 smf protein (smf) K04096 smf; DNA processing protein C 99979 Viral proteins C 99998 Others B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D TP_0106 carnitine transporter, putative K03451 TC.BCT; betaine/carnitine transporter, BCCT family D TP_0023 sodium- and chloride- dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D TP_0414 D-alanine glycine permease (dagA) K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D TP_0998 sodium/proton-dependent alanine transporter K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D TP_0265 amino acid ABC transporter, permease protein (braC) K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family C 99978 Cell growth D TP_0948 spoIIIJ-associated protein (jag) K06346 jag; spoIIIJ-associated protein D TP_0288 spore coat polysaccharide biosynthesis protein (spsF) K07257 spsF; spore coat polysaccharide biosynthesis protein SpsF C 99993 Cell motility C 99995 Signaling proteins C 99992 Structural proteins C 99994 Others B B 09194 Poorly characterized C 99996 General function prediction only D TP_0522 predicted coding region TP0522 K03558 cvpA; membrane protein required for colicin V production D TP_1033 conserved hypothetical protein K07001 K07001; NTE family protein D TP_0158 conserved hypothetical protein K07025 K07025; putative hydrolase of the HAD superfamily D TP_0407 phosphoglycolate phosphatase (gph-1) K07025 K07025; putative hydrolase of the HAD superfamily D TP_0612 conserved hypothetical protein K09014 sufB; Fe-S cluster assembly protein SufB D TP_0613 conserved hypothetical protein K09015 sufD; Fe-S cluster assembly protein SufD D TP_0571 Tp70 protein K03744 lemA; LemA protein D TP_0312 conserved hypothetical protein K08974 K08974; putative membrane protein D TP_0570 predicted coding region TP0570 K08988 K08988; putative membrane protein C 99997 Function unknown D TP_0502 predicted coding region TP0502 K06867 K06867; uncharacterized protein D TP_0835 ankyrin, putative K06867 K06867; uncharacterized protein D TP_0561 conserved hypothetical protein K06872 K06872; uncharacterized protein D TP_0906 conserved hypothetical protein K06960 K06960; uncharacterized protein D TP_0815 predicted coding region TP0815 K06976 K06976; uncharacterized protein D TP_0790 antibiotic transport protein, putative K07003 K07003; uncharacterized protein D TP_0544 predicted coding region TP0544 K07004 K07004; uncharacterized protein D TP_0038 regulatory protein (pfoS/R) K07035 K07035; uncharacterized protein D TP_0937 conserved hypothetical protein K07095 K07095; uncharacterized protein D TP_0050 conserved hypothetical protein K07101 K07101; uncharacterized protein D TP_0494 conserved hypothetical protein K07164 K07164; uncharacterized protein D TP_0087 conserved hypothetical protein K09005 K09005; uncharacterized protein D TP_0710 conserved hypothetical protein K09749 K09749; uncharacterized protein D TP_0829 conserved hypothetical protein K09766 K09766; uncharacterized protein D TP_0845 P23 protein, putative K09768 K09768; uncharacterized protein D TP_0153 conserved hypothetical protein K09775 K09775; uncharacterized protein D TP_0565 predicted coding region TP0565 K09795 K09795; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: September 22, 2024