+D GENES KO #

  KEGG Orthology (KO) - Thermococcus pacificus

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:tpaf00010] D A3L08_05190 glucose-6-phosphate isomerase K06859 pgi1; glucose-6-phosphate isomerase, archaeal [EC:5.3.1.9] D A3L08_05185 ADP-dependent glucokinase K00918 pfkC; ADP-dependent phosphofructokinase/glucokinase [EC:2.7.1.146 2.7.1.147] D A3L08_09265 6-phosphofructokinase K00918 pfkC; ADP-dependent phosphofructokinase/glucokinase [EC:2.7.1.146 2.7.1.147] D A3L08_08420 fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D A3L08_01465 fructose 1,6-bisphosphatase K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11] D A3L08_01995 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D A3L08_07140 glyceraldehyde-3-phosphate dehydrogenase K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59] D A3L08_09010 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D A3L08_05890 phosphoglycerate mutase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D A3L08_01875 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D A3L08_04270 hypothetical protein K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D A3L08_07805 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D A3L08_05415 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D A3L08_01330 porA; pyruvate ferredoxin oxidoreductase K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D A3L08_01335 pyruvate ferredoxin oxidoreductase K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D A3L08_01305 pyruvate ferredoxin oxidoreductase K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D A3L08_01325 porD; pyruvate ferredoxin oxidoreductase K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D A3L08_06765 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D A3L08_06780 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D A3L08_06760 2-oxoglutarate synthase K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D A3L08_06775 2-oxoglutarate synthase K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D A3L08_00460 acetyl-CoA synthetase K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D A3L08_02115 CoA-binding protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D A3L08_09315 CoA-binding protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D A3L08_09440 acetyl CoA synthetase K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D A3L08_04670 acetyl-CoA synthetase K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D A3L08_09310 acetyl-CoA synthetase K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D A3L08_05175 phosphoglucosamine mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D A3L08_01460 glyceraldehyde-3-phosphate:ferredoxin oxidoreductase K11389 gapor; glyceraldehyde-3-phosphate dehydrogenase (ferredoxin) [EC:1.2.7.6] D A3L08_04885 phosphoenolpyruvate carboxykinase K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] C 00020 Citrate cycle (TCA cycle) [PATH:tpaf00020] D A3L08_06765 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D A3L08_06780 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D A3L08_06760 2-oxoglutarate synthase K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D A3L08_06775 2-oxoglutarate synthase K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D A3L08_06755 2-oxoglutarate ferredoxin oxidoreductase subunit gamma K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3] D A3L08_06770 2-oxoglutarate ferredoxin oxidoreductase subunit gamma K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3] D A3L08_06785 2-keto acid:ferredoxin oxidoreductase subunit delta K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3] D A3L08_01240 fumarate hydratase K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D A3L08_01235 fumarate hydratase K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D A3L08_08425 pyruvate carboxylase K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1] D A3L08_04885 phosphoenolpyruvate carboxykinase K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D A3L08_01330 porA; pyruvate ferredoxin oxidoreductase K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D A3L08_01335 pyruvate ferredoxin oxidoreductase K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D A3L08_01305 pyruvate ferredoxin oxidoreductase K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D A3L08_01325 porD; pyruvate ferredoxin oxidoreductase K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] C 00030 Pentose phosphate pathway [PATH:tpaf00030] D A3L08_05190 glucose-6-phosphate isomerase K06859 pgi1; glucose-6-phosphate isomerase, archaeal [EC:5.3.1.9] D A3L08_04555 ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D A3L08_04625 Fe-S cluster assembly protein HesB K13831 hps-phi; 3-hexulose-6-phosphate synthase / 6-phospho-3-hexuloisomerase [EC:4.1.2.43 5.3.1.27] D A3L08_01860 2-deoxyribose-5-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D A3L08_02790 phosphoglucosamine mutase K22199 ppm; phosphopentomutase [EC:5.4.2.7] D A3L08_05175 phosphoglucosamine mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D A3L08_01380 sugar kinase K21056 E2.7.1.212; alpha-D-ribose-1-phosphate 5-kinase (ADP) [EC:2.7.1.212] D A3L08_00550 translation initiation factor IF-2B subunit delta K18237 K18237; ribose 1,5-bisphosphate isomerase [EC:5.3.1.29] D A3L08_00930 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D A3L08_05295 aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D A3L08_05965 aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D A3L08_07400 aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D A3L08_08420 fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D A3L08_01465 fructose 1,6-bisphosphatase K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11] D A3L08_05185 ADP-dependent glucokinase K00918 pfkC; ADP-dependent phosphofructokinase/glucokinase [EC:2.7.1.146 2.7.1.147] D A3L08_09265 6-phosphofructokinase K00918 pfkC; ADP-dependent phosphofructokinase/glucokinase [EC:2.7.1.146 2.7.1.147] C 00040 Pentose and glucuronate interconversions [PATH:tpaf00040] D A3L08_02310 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D A3L08_02305 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] C 00051 Fructose and mannose metabolism [PATH:tpaf00051] D A3L08_05180 cpsB; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D A3L08_05175 phosphoglucosamine mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D A3L08_04890 NDP-sugar synthase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D A3L08_07255 NDP-sugar synthase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D A3L08_08420 fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D A3L08_01465 fructose 1,6-bisphosphatase K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11] D A3L08_01995 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 00052 Galactose metabolism [PATH:tpaf00052] D A3L08_08155 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D A3L08_08135 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D A3L08_02965 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D A3L08_08465 nucleoside-diphosphate sugar epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D A3L08_02305 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D A3L08_05175 phosphoglucosamine mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D A3L08_06935 beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D A3L08_06980 beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] C 00053 Ascorbate and aldarate metabolism D A3L08_02310 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] C 00500 Starch and sucrose metabolism [PATH:tpaf00500] D A3L08_02305 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D A3L08_08105 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D A3L08_08140 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D A3L08_02835 glycogen synthase K20812 glgA; glycogen synthase [EC:2.4.1.242] D A3L08_04880 alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D A3L08_02825 alpha-glycosidase K01208 cd; cyclomaltodextrinase / maltogenic alpha-amylase / neopullulanase [EC:3.2.1.54 3.2.1.133 3.2.1.135] D A3L08_07175 pullulanase K01208 cd; cyclomaltodextrinase / maltogenic alpha-amylase / neopullulanase [EC:3.2.1.54 3.2.1.133 3.2.1.135] D A3L08_02405 4-alpha-glucanotransferase K22451 jgt; 4-alpha-glucanotransferase [EC:2.4.1.25] D A3L08_01160 alpha-amylase K00701 cgt; cyclomaltodextrin glucanotransferase [EC:2.4.1.19] D A3L08_05175 phosphoglucosamine mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D A3L08_05190 glucose-6-phosphate isomerase K06859 pgi1; glucose-6-phosphate isomerase, archaeal [EC:5.3.1.9] C 00620 Pyruvate metabolism [PATH:tpaf00620] D A3L08_01330 porA; pyruvate ferredoxin oxidoreductase K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D A3L08_01335 pyruvate ferredoxin oxidoreductase K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D A3L08_01305 pyruvate ferredoxin oxidoreductase K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D A3L08_01325 porD; pyruvate ferredoxin oxidoreductase K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D A3L08_06765 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D A3L08_06780 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D A3L08_06760 2-oxoglutarate synthase K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D A3L08_06775 2-oxoglutarate synthase K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D A3L08_07805 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D A3L08_01390 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D A3L08_00460 acetyl-CoA synthetase K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D A3L08_02115 CoA-binding protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D A3L08_09315 CoA-binding protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D A3L08_09440 acetyl CoA synthetase K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D A3L08_04670 acetyl-CoA synthetase K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D A3L08_09310 acetyl-CoA synthetase K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D A3L08_08715 hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D A3L08_01230 malate dehydrogenase K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D A3L08_03900 glutaconyl-CoA decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D A3L08_08425 pyruvate carboxylase K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1] D A3L08_01240 fumarate hydratase K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D A3L08_01235 fumarate hydratase K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D A3L08_04885 phosphoenolpyruvate carboxykinase K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D A3L08_05415 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D A3L08_00525 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:tpaf00630] D A3L08_00525 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D A3L08_09045 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D A3L08_09035 methylmalonyl-CoA mutase K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D A3L08_09510 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D A3L08_06700 hydroxyacid dehydrogenase K00015 gyaR; glyoxylate reductase [EC:1.1.1.26] D A3L08_08770 D-glycerate dehydrogenase K00015 gyaR; glyoxylate reductase [EC:1.1.1.26] D A3L08_04575 phosphoglycolate phosphatase K22223 pgp; phosphoglycolate phosphatase [EC:3.1.3.18] D A3L08_02955 HAD family hydrolase K28203 K28203; phosphoglycolate phosphatase [EC:3.1.3.18] D A3L08_00080 type III ribulose-bisphosphate carboxylase K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] D A3L08_00555 aminotransferase K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D A3L08_08775 alanine glyoxylate aminotransferase K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D A3L08_05115 alanine aminotransferase K28204 K28204; glyoxylate aminotransferase [EC:2.6.1.-] D A3L08_02695 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D A3L08_07920 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D A3L08_05000 glycine dehydrogenase K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D A3L08_05005 glycine dehydrogenase (aminomethyl-transferring) K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D A3L08_01410 glycine cleavage system protein T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D A3L08_00360 glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein D A3L08_06505 formate dehydrogenase K00124 fdoH; formate dehydrogenase iron-sulfur subunit C 00640 Propanoate metabolism [PATH:tpaf00640] D A3L08_00460 acetyl-CoA synthetase K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D A3L08_02115 CoA-binding protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D A3L08_09315 CoA-binding protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D A3L08_09440 acetyl CoA synthetase K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D A3L08_04670 acetyl-CoA synthetase K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D A3L08_09310 acetyl-CoA synthetase K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D A3L08_01330 porA; pyruvate ferredoxin oxidoreductase K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D A3L08_01335 pyruvate ferredoxin oxidoreductase K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D A3L08_01305 pyruvate ferredoxin oxidoreductase K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D A3L08_01325 porD; pyruvate ferredoxin oxidoreductase K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D A3L08_01845 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D A3L08_02450 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D A3L08_06150 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D A3L08_09045 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D A3L08_09035 methylmalonyl-CoA mutase K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D A3L08_09510 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] C 00650 Butanoate metabolism [PATH:tpaf00650] D A3L08_00525 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D A3L08_03900 glutaconyl-CoA decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D A3L08_03905 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma D A3L08_03910 methylmalonyl-CoA epimerase K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta D A3L08_09270 maleate cis-trans isomerase K01799 nicE; maleate isomerase [EC:5.2.1.1] D A3L08_01845 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D A3L08_02450 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D A3L08_06150 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D A3L08_01330 porA; pyruvate ferredoxin oxidoreductase K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D A3L08_01335 pyruvate ferredoxin oxidoreductase K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D A3L08_01305 pyruvate ferredoxin oxidoreductase K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D A3L08_01325 porD; pyruvate ferredoxin oxidoreductase K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D A3L08_06765 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D A3L08_06780 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D A3L08_06760 2-oxoglutarate synthase K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D A3L08_06775 2-oxoglutarate synthase K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D A3L08_00530 hypothetical protein K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D A3L08_00405 hypothetical protein K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism D A3L08_00405 hypothetical protein K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] C 00562 Inositol phosphate metabolism [PATH:tpaf00562] D A3L08_09090 fructose-1,6-bisphosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D A3L08_00140 myo-inositol-1-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4] D A3L08_00135 CDP-alcohol phosphatidyltransferase K23992 K23992; 1L-myo-inositol 1-phosphate cytidylyltransferase / CDP-L-myo-inositol myo-inositolphosphotransferase [EC:2.7.7.74 2.7.8.34] D A3L08_01995 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:tpaf00190] D A3L08_06185 NADH dehydrogenase K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D A3L08_06180 NADH dehydrogenase K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2] D A3L08_06175 NADH-quinone oxidoreductase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2] D A3L08_03990 NADH dehydrogenase K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D A3L08_03995 NADH dehydrogenase K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D A3L08_06190 NADH dehydrogenase K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D A3L08_06170 NADH-quinone oxidoreductase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D A3L08_06195 NADH dehydrogenase K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D A3L08_02600 V-type ATP synthase subunit A K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1] D A3L08_02605 V-type ATP synthase subunit B K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B D A3L08_02590 V-type ATP synthase subunit C K02119 ATPVC; V/A-type H+/Na+-transporting ATPase subunit C D A3L08_02610 V-type ATP synthase subunit D K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D D A3L08_02585 V-type ATP synthase subunit E K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E D A3L08_02595 V-type ATP synthase subunit F K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F D A3L08_02570 V-type ATP synthase subunit H K02107 ATPVG; V/A-type H+/Na+-transporting ATPase subunit G/H D A3L08_02575 V-type ATP synthase subunit I K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I D A3L08_02580 V-type ATP synthase subunit K K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K D A3L08_03385 inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation by Calvin cycle [PATH:tpaf00710] D A3L08_00080 type III ribulose-bisphosphate carboxylase K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] D A3L08_09010 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D A3L08_07140 glyceraldehyde-3-phosphate dehydrogenase K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59] D A3L08_08420 fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D A3L08_04555 ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D A3L08_01995 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 00720 Other carbon fixation pathways [PATH:tpaf00720] D A3L08_01330 porA; pyruvate ferredoxin oxidoreductase K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D A3L08_01335 pyruvate ferredoxin oxidoreductase K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D A3L08_01305 pyruvate ferredoxin oxidoreductase K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D A3L08_01325 porD; pyruvate ferredoxin oxidoreductase K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D A3L08_05415 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D A3L08_08425 pyruvate carboxylase K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1] D A3L08_01240 fumarate hydratase K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D A3L08_01235 fumarate hydratase K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D A3L08_00525 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D A3L08_06765 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D A3L08_06780 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D A3L08_06760 2-oxoglutarate synthase K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D A3L08_06775 2-oxoglutarate synthase K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D A3L08_06755 2-oxoglutarate ferredoxin oxidoreductase subunit gamma K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3] D A3L08_06770 2-oxoglutarate ferredoxin oxidoreductase subunit gamma K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3] D A3L08_06785 2-keto acid:ferredoxin oxidoreductase subunit delta K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3] D A3L08_09045 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D A3L08_09510 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D A3L08_09035 methylmalonyl-CoA mutase K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] C 00680 Methane metabolism [PATH:tpaf00680] D A3L08_06505 formate dehydrogenase K00124 fdoH; formate dehydrogenase iron-sulfur subunit D A3L08_06500 hypothetical protein K22516 fdhA; formate dehydrogenase (coenzyme F420) alpha subunit [EC:1.17.98.3 1.8.98.6] D A3L08_07920 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D A3L08_01875 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D A3L08_04270 hypothetical protein K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D A3L08_08420 fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D A3L08_01465 fructose 1,6-bisphosphatase K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11] D A3L08_05185 ADP-dependent glucokinase K00918 pfkC; ADP-dependent phosphofructokinase/glucokinase [EC:2.7.1.146 2.7.1.147] D A3L08_09265 6-phosphofructokinase K00918 pfkC; ADP-dependent phosphofructokinase/glucokinase [EC:2.7.1.146 2.7.1.147] D A3L08_04625 Fe-S cluster assembly protein HesB K13831 hps-phi; 3-hexulose-6-phosphate synthase / 6-phospho-3-hexuloisomerase [EC:4.1.2.43 5.3.1.27] D A3L08_06600 coenzyme F420 hydrogenase K00440 frhA; coenzyme F420 hydrogenase subunit alpha [EC:1.12.98.1] D A3L08_06610 coenzyme F420 hydrogenase K00441 frhB; coenzyme F420 hydrogenase subunit beta [EC:1.12.98.1] D A3L08_06605 coenzyme F420 hydrogenase K00443 frhG; coenzyme F420 hydrogenase subunit gamma [EC:1.12.98.1] D A3L08_01330 porA; pyruvate ferredoxin oxidoreductase K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D A3L08_01335 pyruvate ferredoxin oxidoreductase K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D A3L08_01305 pyruvate ferredoxin oxidoreductase K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D A3L08_01325 porD; pyruvate ferredoxin oxidoreductase K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D A3L08_05415 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D A3L08_05890 phosphoglycerate mutase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D A3L08_01245 3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D A3L08_04020 aspartate aminotransferase K28205 E2.6.1.52; phosphoserine transaminase [EC:2.6.1.52] D A3L08_09740 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D A3L08_02375 tyrosine decarboxylase MfnA K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11] C 00910 Nitrogen metabolism [PATH:tpaf00910] D A3L08_04525 glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D A3L08_02695 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D A3L08_00335 dihydropyrimidine dehydrogenase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D A3L08_00760 dihydropyrimidine dehydrogenase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D A3L08_06585 glutamate synthase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D A3L08_01450 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] C 00920 Sulfur metabolism [PATH:tpaf00920] D A3L08_02355 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D A3L08_02340 adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D A3L08_05995 phosphoesterase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] D A3L08_08830 hypothetical protein K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D A3L08_06490 cytochrome-c3 hydrogenase subunit gamma K17995 hydG; sulfhydrogenase subunit gamma (sulfur reductase) [EC:1.12.98.4] D A3L08_06495 hydrogenase K17996 hydB; sulfhydrogenase subunit beta (sulfur reductase) [EC:1.12.98.4] D A3L08_06480 sulfhydrogenase 1 subunit alpha K17993 hydA; sulfhydrogenase subunit alpha [EC:1.12.1.3 1.12.1.5] D A3L08_06485 sulfhydrogenase 1 subunit delta K17994 hydD; sulfhydrogenase subunit delta [EC:1.12.1.3 1.12.1.5] D A3L08_05385 CoA-disulfide reductase K18367 CoADR; CoA-dependent NAD(P)H sulfur oxidoreductase [EC:1.8.1.18] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:tpaf00061] D A3L08_06105 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D A3L08_07605 sugar dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:tpaf00071] D A3L08_00525 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D A3L08_08235 pyridine nucleotide-disulfide oxidoreductase K00530 nroR; rubredoxin---NAD(P)+ reductase [EC:1.18.1.4] C 00073 Cutin, suberine and wax biosynthesis C 00074 Mycolic acid biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism D A3L08_04945 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] C 00564 Glycerophospholipid metabolism [PATH:tpaf00564] D A3L08_04950 FAD/NAD(P)-binding oxidoreductase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D A3L08_04930 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D A3L08_04935 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D A3L08_09100 egsA; NAD(P)-dependent glycerol-1-phosphate dehydrogenase K00096 araM; glycerol-1-phosphate dehydrogenase [NAD(P)+] [EC:1.1.1.261] D A3L08_09200 geranylgeranylglyceryl/heptaprenylglyceryl phosphate synthase K17104 E2.5.1.41; phosphoglycerol geranylgeranyltransferase [EC:2.5.1.41] D A3L08_03605 ubiA; prenyltransferase K17105 E2.5.1.42; geranylgeranylglycerol-phosphate geranylgeranyltransferase [EC:2.5.1.42] D A3L08_01940 hypothetical protein K19664 carS; CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase [EC:2.7.7.67] D A3L08_04750 digeranylgeranylglycerophospholipid reductase K17830 GGR; digeranylgeranylglycerophospholipid reductase [EC:1.3.1.101 1.3.7.11] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism D A3L08_06935 beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D A3L08_06980 beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:tpaf00230] D A3L08_02790 phosphoglucosamine mutase K22199 ppm; phosphopentomutase [EC:5.4.2.7] D A3L08_05175 phosphoglucosamine mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D A3L08_00930 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D A3L08_03230 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D A3L08_03255 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D A3L08_03245 phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21] D A3L08_03275 phosphoribosylformylglycinamidine synthase K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3] D A3L08_03265 phosphoribosylformylglycinamidine synthase K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3] D A3L08_03270 phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D A3L08_03240 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D A3L08_03250 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D A3L08_03235 phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D A3L08_06905 phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D A3L08_08565 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D A3L08_03260 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase K06863 purP; 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase [EC:6.3.4.23] D A3L08_03280 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase K06863 purP; 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase [EC:6.3.4.23] D A3L08_06910 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase K06863 purP; 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase [EC:6.3.4.23] D A3L08_06915 IMP cyclohydrolase K11176 purO; IMP cyclohydrolase [EC:3.5.4.10] D A3L08_06805 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D A3L08_03190 IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D A3L08_08800 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D A3L08_02880 yjjX; NTPase K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73] D A3L08_01900 non-canonical purine NTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D A3L08_03285 GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D A3L08_03290 GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D A3L08_04350 5'-methylthioadenosine phosphorylase K26211 K26211; guanosine phosphorylase [EC:2.4.2.15] D A3L08_02945 ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D A3L08_05530 adenylate cyclase K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1] D A3L08_07785 adenylate cyclase K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1] D A3L08_08460 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D A3L08_09185 thymidine phosphorylase K18931 deoA; AMP phosphorylase [EC:2.4.2.57] D A3L08_04170 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D A3L08_04530 hypothetical protein K00939 adk; adenylate kinase [EC:2.7.4.3] D A3L08_07270 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D A3L08_09130 kinase K18532 AK6; adenylate kinase [EC:2.7.4.3] D A3L08_08585 NTPase K06928 NTPCR; nucleoside-triphosphatase [EC:3.6.1.15] D A3L08_03835 HIT family hydrolase K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53] D A3L08_05880 HIT family hydrolase K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53] D A3L08_02340 adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D A3L08_02355 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D A3L08_01450 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] C 00240 Pyrimidine metabolism [PATH:tpaf00240] D A3L08_01080 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D A3L08_01085 aspartate carbamoyltransferase regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D A3L08_02650 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D A3L08_00695 dihydroorotate dehydrogenase K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14] D A3L08_02645 dihydroorotate dehydrogenase electron transfer subunit K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit D A3L08_01500 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D A3L08_00150 orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D A3L08_00665 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D A3L08_08800 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D A3L08_09345 septum formation inhibitor Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D A3L08_05455 pyrG; CTP synthetase K01937 pyrG; CTP synthase [EC:6.3.4.2] D A3L08_04185 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D A3L08_06805 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D A3L08_04370 uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3] D A3L08_05430 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D A3L08_02230 carbohydrate kinase K21057 E2.7.1.213; cytidine kinase [EC:2.7.1.213] D A3L08_09185 thymidine phosphorylase K18931 deoA; AMP phosphorylase [EC:2.4.2.57] D A3L08_04840 dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D A3L08_02945 ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D A3L08_00810 dCMP deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12] D A3L08_04900 dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D A3L08_00075 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21] D A3L08_05860 FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:tpaf00250] D A3L08_00190 aromatic amino acid aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D A3L08_03195 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D A3L08_07765 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13] D A3L08_03770 L-asparaginase 1 K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D A3L08_00865 asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D A3L08_09375 asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D A3L08_08460 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D A3L08_08565 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D A3L08_01080 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D A3L08_01085 aspartate carbamoyltransferase regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D A3L08_01845 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D A3L08_02450 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D A3L08_06150 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D A3L08_00335 dihydropyrimidine dehydrogenase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D A3L08_00760 dihydropyrimidine dehydrogenase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D A3L08_06585 glutamate synthase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D A3L08_04525 glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D A3L08_02695 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D A3L08_03270 phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D A3L08_07285 glutamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D A3L08_03230 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D A3L08_05115 alanine aminotransferase K28204 K28204; glyoxylate aminotransferase [EC:2.6.1.-] D A3L08_07850 aspartate racemase C 00260 Glycine, serine and threonine metabolism [PATH:tpaf00260] D A3L08_03890 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D A3L08_01020 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D A3L08_04375 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D A3L08_04545 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D A3L08_07920 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D A3L08_05890 phosphoglycerate mutase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D A3L08_01245 3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D A3L08_04020 aspartate aminotransferase K28205 E2.6.1.52; phosphoserine transaminase [EC:2.6.1.52] D A3L08_09740 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D A3L08_00985 8-amino-7-oxononanoate synthase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D A3L08_05680 tdh; L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103] D A3L08_05000 glycine dehydrogenase K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D A3L08_05005 glycine dehydrogenase (aminomethyl-transferring) K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D A3L08_01410 glycine cleavage system protein T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D A3L08_00360 glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein D A3L08_04470 TrpB-like pyridoxal-phosphate dependent enzyme K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20] C 00270 Cysteine and methionine metabolism [PATH:tpaf00270] D A3L08_06665 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D A3L08_02550 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D A3L08_00425 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D A3L08_02055 5'-methylthioadenosine phosphorylase K00772 mtaP; 5'-methylthioadenosine phosphorylase [EC:2.4.2.28] D A3L08_02060 N-ethylammeline chlorohydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28] D A3L08_08845 amidohydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28] D A3L08_08590 S-methyl-5-thioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23] D A3L08_09770 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D A3L08_03890 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D A3L08_00190 aromatic amino acid aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D A3L08_01245 3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D A3L08_04020 aspartate aminotransferase K28205 E2.6.1.52; phosphoserine transaminase [EC:2.6.1.52] D A3L08_07070 chromosome partitioning protein ParB K23370 serK; L-serine kinase (ADP) [EC:2.7.1.226] D A3L08_04745 ferredoxin C 00280 Valine, leucine and isoleucine degradation [PATH:tpaf00280] D A3L08_01315 porA; pyruvate ferredoxin oxidoreductase K00186 vorA; 2-oxoisovalerate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.7] D A3L08_01320 2-ketoisovalerate ferredoxin oxidoreductase K00187 vorB; 2-oxoisovalerate ferredoxin oxidoreductase beta subunit [EC:1.2.7.7] D A3L08_01305 pyruvate ferredoxin oxidoreductase K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D A3L08_01310 vorD; 2-ketoisovalerate ferredoxin oxidoreductase K00188 vorD; 2-oxoisovalerate ferredoxin oxidoreductase delta subunit [EC:1.2.7.7] D A3L08_09045 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D A3L08_09035 methylmalonyl-CoA mutase K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D A3L08_09510 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D A3L08_08185 6-phosphogluconate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D A3L08_00525 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D A3L08_00530 hypothetical protein K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:tpaf00290] D A3L08_00405 hypothetical protein K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D A3L08_05115 alanine aminotransferase K28204 K28204; glyoxylate aminotransferase [EC:2.6.1.-] C 00300 Lysine biosynthesis [PATH:tpaf00300] D A3L08_03890 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D A3L08_06290 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D A3L08_02770 diaminopimelate aminotransferase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D A3L08_04430 peptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D A3L08_00555 aminotransferase K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D A3L08_08775 alanine glyoxylate aminotransferase K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D A3L08_01220 deacylase C 00310 Lysine degradation D A3L08_00525 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00220 Arginine biosynthesis [PATH:tpaf00220] D A3L08_05855 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D A3L08_03270 phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D A3L08_02695 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D A3L08_01450 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D A3L08_04525 glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D A3L08_00190 aromatic amino acid aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D A3L08_08645 acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] C 00330 Arginine and proline metabolism [PATH:tpaf00330] D A3L08_00415 pyruvoyl-dependent arginine decarboxylase K02626 pdaD; arginine decarboxylase [EC:4.1.1.19] D A3L08_04630 arginase K01480 speB; agmatinase [EC:3.5.3.11] D A3L08_05815 agmatinase K01480 speB; agmatinase [EC:3.5.3.11] D A3L08_00425 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D A3L08_02550 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D A3L08_00190 aromatic amino acid aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism D A3L08_05895 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00350 Tyrosine metabolism [PATH:tpaf00350] D A3L08_00190 aromatic amino acid aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D A3L08_05895 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D A3L08_02375 tyrosine decarboxylase MfnA K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11] C 00360 Phenylalanine metabolism [PATH:tpaf00360] D A3L08_00190 aromatic amino acid aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D A3L08_05895 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00380 Tryptophan metabolism D A3L08_00525 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:tpaf00400] D A3L08_08115 indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D A3L08_04470 TrpB-like pyridoxal-phosphate dependent enzyme K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D A3L08_00190 aromatic amino acid aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D A3L08_05895 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:tpaf00410] D A3L08_02375 tyrosine decarboxylase MfnA K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11] D A3L08_01845 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D A3L08_02450 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D A3L08_06150 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D A3L08_00770 hypothetical protein K09722 K09722; 4-phosphopantoate---beta-alanine ligase [EC:6.3.2.36] C 00430 Taurine and hypotaurine metabolism C 00440 Phosphonate and phosphinate metabolism D A3L08_09585 ATP-binding protein K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55] C 00450 Selenocompound metabolism [PATH:tpaf00450] D A3L08_05365 cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D A3L08_01840 thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D A3L08_02355 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D A3L08_06740 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:tpaf00460] D A3L08_08105 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D A3L08_08140 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D A3L08_03770 L-asparaginase 1 K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D A3L08_00865 asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D A3L08_07920 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:tpaf00470] D A3L08_03270 phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D A3L08_07765 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13] D A3L08_07850 aspartate racemase C 00480 Glutathione metabolism [PATH:tpaf00480] D A3L08_09120 lactam utilization protein LamB K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9] D A3L08_09110 urea amidolyase K23124 pxpC; 5-oxoprolinase (ATP-hydrolysing) subunit C [EC:3.5.2.9] D A3L08_00425 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00520 Amino sugar and nucleotide sugar metabolism [PATH:tpaf00520] D A3L08_05490 glucose-1-phosphate thymidylyltransferase K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276] D A3L08_06260 UDP-N-acetyl glucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D A3L08_01120 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D A3L08_07285 glutamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D A3L08_05190 glucose-6-phosphate isomerase K06859 pgi1; glucose-6-phosphate isomerase, archaeal [EC:5.3.1.9] D A3L08_05180 cpsB; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D A3L08_05175 phosphoglucosamine mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D A3L08_02305 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D A3L08_02310 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D A3L08_08155 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D A3L08_08135 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D A3L08_02965 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D A3L08_08465 nucleoside-diphosphate sugar epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D A3L08_04890 NDP-sugar synthase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D A3L08_07255 NDP-sugar synthase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D A3L08_02960 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D A3L08_03035 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] C 00541 Biosynthesis of various nucleotide sugars [PATH:tpaf00541] D A3L08_05490 glucose-1-phosphate thymidylyltransferase K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276] D A3L08_06260 UDP-N-acetyl glucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D A3L08_06265 NDP-sugar dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] D A3L08_02305 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D A3L08_02310 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D A3L08_02960 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D A3L08_03035 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D A3L08_03040 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D A3L08_03045 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D A3L08_03060 NAD(P)-dependent oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D A3L08_04890 NDP-sugar synthase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D A3L08_07255 NDP-sugar synthase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D A3L08_05180 cpsB; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation [PATH:tpaf00511] D A3L08_06935 beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D A3L08_06980 beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] C 00540 Lipopolysaccharide biosynthesis C 00542 O-Antigen repeat unit biosynthesis C 00550 Peptidoglycan biosynthesis C 00552 Teichoic acid biosynthesis [PATH:tpaf00552] D A3L08_05485 bacilysin biosynthesis protein BacA K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:tpaf00543] D A3L08_08310 glycosyl transferase K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-] D A3L08_02315 glycosyltransferase K13658 gumI; beta-1,4-mannosyltransferase [EC:2.4.1.251] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:tpaf00730] D A3L08_06900 phosphomethylpyrimidine synthase K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D A3L08_06890 phosphomethylpyrimidine kinase K21219 thiDN; hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase [EC:2.7.1.49 2.7.4.7 2.5.1.3] D A3L08_09285 tRNA 4-thiouridine(8) synthase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D A3L08_09295 hypothetical protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D A3L08_06895 ribose 1,5-bisphosphate isomerase K22699 thi4; sulfide-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.59] D A3L08_05785 thiamine-phosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D A3L08_08585 NTPase K06928 NTPCR; nucleoside-triphosphatase [EC:3.6.1.15] D A3L08_04170 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D A3L08_04530 hypothetical protein K00939 adk; adenylate kinase [EC:2.7.4.3] D A3L08_07270 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:tpaf00740] D A3L08_06650 riboflavin kinase K07732 rfk; riboflavin kinase, archaea type [EC:2.7.1.161] D A3L08_00160 FAD synthase K14656 ribL; FAD synthetase [EC:2.7.7.2] D A3L08_07795 aromatic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:tpaf00750] D A3L08_01020 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D A3L08_04375 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D A3L08_04545 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D A3L08_03215 pyridoxal biosynthesis lyase PdxS K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6] D A3L08_03220 pyridoxal 5'-phosphate synthase subunit PdxT K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6] C 00760 Nicotinate and nicotinamide metabolism [PATH:tpaf00760] D A3L08_03195 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D A3L08_03205 quinolinate synthase K03517 nadA; quinolinate synthase [EC:2.5.1.72] D A3L08_03210 nicotinate-nucleotide pyrophosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D A3L08_00740 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D A3L08_06805 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D A3L08_09690 nicotinamide-nucleotide adenylyltransferase K00952 nadM; nicotinamide-nucleotide adenylyltransferase [EC:2.7.7.1] D A3L08_02685 NAD(+) synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5] D A3L08_03795 nicotinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] D A3L08_07910 NAD-dependent protein deacylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D A3L08_01965 ppnK; NAD(+) kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D A3L08_09270 maleate cis-trans isomerase K01799 nicE; maleate isomerase [EC:5.2.1.1] C 00770 Pantothenate and CoA biosynthesis [PATH:tpaf00770] D A3L08_00405 hypothetical protein K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D A3L08_07520 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D A3L08_01255 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D A3L08_01515 pantothenate kinase K06982 pok; pantoate kinase [EC:2.7.1.169] D A3L08_00770 hypothetical protein K09722 K09722; 4-phosphopantoate---beta-alanine ligase [EC:6.3.2.36] D A3L08_07840 phosphopantothenoylcysteine decarboxylase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D A3L08_01990 phosphopantetheine adenylyltransferase K02201 E2.7.7.3B; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D A3L08_01100 hypothetical protein K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D A3L08_03370 hypothetical protein K09735 dpck; GTP-dependent dephospho-CoA kinase [EC:2.7.1.237] D A3L08_02375 tyrosine decarboxylase MfnA K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11] C 00780 Biotin metabolism [PATH:tpaf00780] D A3L08_06105 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D A3L08_07605 sugar dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D A3L08_08410 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D A3L08_08925 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:tpaf00785] D A3L08_01890 biotin synthase K09711 lipS1; lipoyl synthase D A3L08_00855 biotin synthase K24689 lipS2; lipoyl synthase D A3L08_01635 lipoate--protein ligase K03800 lplA; lipoate---protein ligase [EC:6.3.1.20] D A3L08_06280 lipoate--protein ligase K03800 lplA; lipoate---protein ligase [EC:6.3.1.20] D A3L08_05000 glycine dehydrogenase K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D A3L08_05005 glycine dehydrogenase (aminomethyl-transferring) K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D A3L08_01410 glycine cleavage system protein T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D A3L08_00360 glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:tpaf00790] D A3L08_05625 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D A3L08_08555 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D A3L08_06065 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D A3L08_00700 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D A3L08_07365 GTP cyclohydrolase K17488 mptA; GTP cyclohydrolase IV [EC:3.5.4.39] D A3L08_09565 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase K07142 mptE; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D A3L08_05635 GHMP kinase K06984 K06984; beta-ribofuranosylaminobenzene 5'-phosphate synthase [EC:2.4.2.54] D A3L08_05480 MBL fold hydrolase K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105] D A3L08_07775 MBL fold metallo-hydrolase K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105] D A3L08_06745 6-pyruvoyl tetrahydropterin synthase K22102 E4.1.2.59; dihydroneopterin phosphate aldolase [EC:4.1.2.59] D A3L08_00960 cyclic pyranopterin phosphate synthase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D A3L08_07570 molybdenum cofactor biosynthesis protein MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D A3L08_01920 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D A3L08_07655 molybdenum cofactor biosynthesis protein K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D A3L08_07650 molybdopterin molybdenumtransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D A3L08_09415 molybdopterin molybdenumtransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D A3L08_05335 molybdenum cofactor guanylyltransferase MobA K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:tpaf00670] D A3L08_07920 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D A3L08_01410 glycine cleavage system protein T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D A3L08_05860 FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D A3L08_06665 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D A3L08_09770 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D A3L08_05000 glycine dehydrogenase K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D A3L08_05005 glycine dehydrogenase (aminomethyl-transferring) K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D A3L08_00360 glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:tpaf00860] D A3L08_04870 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D A3L08_05285 tungsten cofactor oxidoreducase radical SAM maturase K22226 ahbC; Fe-coproporphyrin III synthase D A3L08_07120 cobalamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D A3L08_01585 cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D A3L08_05940 cobyric acid synthase CobQ K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D A3L08_05900 cobalamin biosynthesis protein K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D A3L08_05950 adenosylcobinamide amidohydrolase K08260 cbiZ; adenosylcobinamide hydrolase [EC:3.5.1.90] D A3L08_05925 cobalamin biosynthesis protein CobY K19712 cobY; adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.7.62] D A3L08_05920 adenosylcobinamide-GDP ribazoletransferase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis D A3L08_07795 aromatic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:tpaf00900] D A3L08_00525 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D A3L08_00530 hypothetical protein K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D A3L08_05690 3-hydroxy-3-methylglutaryl-CoA reductase K00021 HMGCR; hydroxymethylglutaryl-CoA reductase (NADPH) [EC:1.1.1.34] D A3L08_04385 mevalonate kinase K00869 MVK; mevalonate kinase [EC:2.7.1.36] D A3L08_04390 acetylglutamate kinase K06981 ipk; isopentenyl phosphate kinase [EC:2.7.4.26] D A3L08_06360 hypothetical protein K25517 acnX1; phosphomecalonate degydratase large subunit [EC:4.2.1.182] D A3L08_06355 hypothetical protein K09128 acnX2; phosphomecalonate degydratase small subunit [EC:4.2.1.182] D A3L08_05655 hypothetical protein K25518 E4.1.1.126; anhydromevalonate phosphate decarboxylase [EC:4.1.1.126] D A3L08_07795 aromatic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D A3L08_04415 type 2 isopentenyl-diphosphate Delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] D A3L08_04425 serralysin K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] D A3L08_05560 UDP diphosphate synthase K15888 uppS; tritrans,polycis-undecaprenyl-diphosphate synthase [geranylgeranyl-diphosphate specific] [EC:2.5.1.89] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:tpaf00523] D A3L08_02960 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D A3L08_03035 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D A3L08_05490 glucose-1-phosphate thymidylyltransferase K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276] D A3L08_03040 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D A3L08_03045 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D A3L08_03060 NAD(P)-dependent oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures [PATH:tpaf01054] D A3L08_07765 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13] D A3L08_07850 aspartate racemase C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics D A3L08_03040 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids [PATH:tpaf00946] D A3L08_08105 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D A3L08_08140 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis C 00261 Monobactam biosynthesis [PATH:tpaf00261] D A3L08_02355 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D A3L08_06290 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:tpaf00521] D A3L08_05175 phosphoglucosamine mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D A3L08_00140 myo-inositol-1-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4] D A3L08_09090 fructose-1,6-bisphosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D A3L08_02960 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D A3L08_03035 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D A3L08_05490 glucose-1-phosphate thymidylyltransferase K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276] D A3L08_03040 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D A3L08_03045 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D A3L08_03060 NAD(P)-dependent oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis C 00525 Acarbose and validamycin biosynthesis [PATH:tpaf00525] D A3L08_02960 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D A3L08_03035 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D A3L08_05490 glucose-1-phosphate thymidylyltransferase K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276] D A3L08_03040 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:tpaf00401] D A3L08_00190 aromatic amino acid aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D A3L08_05895 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis C 00333 Prodigiosin biosynthesis D A3L08_06105 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D A3L08_07605 sugar dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics C 00999 Biosynthesis of various plant secondary metabolites [PATH:tpaf00999] D A3L08_06665 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D A3L08_08105 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D A3L08_08140 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] C 00997 Biosynthesis of various other secondary metabolites D A3L08_04425 serralysin K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:tpaf00362] D A3L08_08325 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D A3L08_03900 glutaconyl-CoA decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D A3L08_03905 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma D A3L08_03910 methylmalonyl-CoA epimerase K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta D A3L08_00525 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation [PATH:tpaf00627] D A3L08_01390 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D A3L08_07795 aromatic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation C 00361 Chlorocyclohexane and chlorobenzene degradation C 00623 Toluene degradation C 00622 Xylene degradation D A3L08_08325 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] C 00633 Nitrotoluene degradation D A3L08_01330 porA; pyruvate ferredoxin oxidoreductase K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D A3L08_01335 pyruvate ferredoxin oxidoreductase K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D A3L08_01305 pyruvate ferredoxin oxidoreductase K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D A3L08_01325 porD; pyruvate ferredoxin oxidoreductase K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] C 00642 Ethylbenzene degradation C 00643 Styrene degradation C 00791 Atrazine degradation C 00930 Caprolactam degradation C 00363 Bisphenol degradation C 00621 Dioxin degradation D A3L08_08325 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] C 00626 Naphthalene degradation C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:tpaf03020] D A3L08_05035 DNA-directed RNA polymerase subunit B K13798 rpoB; DNA-directed RNA polymerase subunit B [EC:2.7.7.6] D A3L08_05040 DNA-directed RNA polymerase subunit A' K03041 rpoA1; DNA-directed RNA polymerase subunit A' [EC:2.7.7.6] D A3L08_05045 DNA-directed RNA polymerase subunit A'' K03042 rpoA2; DNA-directed RNA polymerase subunit A" [EC:2.7.7.6] D A3L08_04230 DNA-directed RNA polymerase subunit D K03047 rpoD; DNA-directed RNA polymerase subunit D [EC:2.7.7.6] D A3L08_05590 DNA-directed RNA polymerase subunit L K03056 rpoL; DNA-directed RNA polymerase subunit L [EC:2.7.7.6] D A3L08_03380 DNA-directed RNA polymerase K03049 rpoE1; DNA-directed RNA polymerase subunit E' [EC:2.7.7.6] D A3L08_05725 DNA-directed RNA polymerase subunit F K03051 rpoF; DNA-directed RNA polymerase subunit F [EC:2.7.7.6] D A3L08_05030 DNA-directed RNA polymerase subunit H K03053 rpoH; DNA-directed RNA polymerase subunit H [EC:2.7.7.6] D A3L08_04265 DNA-directed RNA polymerase subunit K K03055 rpoK; DNA-directed RNA polymerase subunit K [EC:2.7.7.6] D A3L08_04255 DNA-directed RNA polymerase subunit N K03058 rpoN; DNA-directed RNA polymerase subunit N [EC:2.7.7.6] D A3L08_06045 DNA-directed RNA polymerase subunit P K03059 rpoP; DNA-directed RNA polymerase subunit P [EC:2.7.7.6] C 03022 Basal transcription factors [PATH:tpaf03022] D A3L08_00095 tfb; transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D A3L08_09455 tfb; transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D A3L08_00485 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D A3L08_01355 transcription factor K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha D A3L08_09230 DNA repair helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:tpaf03010] D A3L08_00925 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D A3L08_00915 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D A3L08_03635 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D A3L08_09750 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D A3L08_06395 30S ribosomal protein S3Ae K02984 RP-S3Ae; small subunit ribosomal protein S3Ae D A3L08_04110 30S ribosomal protein S4e K02987 RP-S4e; small subunit ribosomal protein S4e D A3L08_03575 30S ribosomal protein S6 K02991 RP-S6e; small subunit ribosomal protein S6e D A3L08_05465 30S ribosomal protein S8e K02995 RP-S8e; small subunit ribosomal protein S8e D A3L08_00065 30S ribosomal protein S17e K02962 RP-S17e; small subunit ribosomal protein S17e D A3L08_09475 30S ribosomal protein S19 K02966 RP-S19e; small subunit ribosomal protein S19e D A3L08_03365 30S ribosomal protein S24 K02974 RP-S24e; small subunit ribosomal protein S24e D A3L08_05135 rps27e; 30S ribosomal protein S27 K02978 RP-S27e; small subunit ribosomal protein S27e D A3L08_03360 30S ribosomal protein S27 K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae D A3L08_08810 30S ribosomal protein S28 K02979 RP-S28e; small subunit ribosomal protein S28e D A3L08_04275 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D A3L08_04075 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D A3L08_04220 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D A3L08_04150 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D A3L08_05065 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D A3L08_04125 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D A3L08_04250 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D A3L08_07385 rps10p; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D A3L08_04225 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D A3L08_05060 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D A3L08_04215 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D A3L08_04120 rps14P; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D A3L08_06380 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D A3L08_04095 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D A3L08_04065 rps19p; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D A3L08_04050 rpl4lp; 50S ribosomal protein L4 K02930 RP-L4e; large subunit ribosomal protein L4e D A3L08_08815 rpl7ae; 50S ribosomal protein L7Ae K02936 RP-L7Ae; large subunit ribosomal protein L7Ae D A3L08_04030 50S ribosomal protein L16 K02866 RP-L10e; large subunit ribosomal protein L10e D A3L08_04190 50S ribosomal protein L14e K02875 RP-L14e; large subunit ribosomal protein L14e D A3L08_04455 50S ribosomal protein L15e K02877 RP-L15e; large subunit ribosomal protein L15e D A3L08_04240 50S ribosomal protein L18e K02883 RP-L18e; large subunit ribosomal protein L18e D A3L08_09490 50S ribosomal protein L18a K02944 RP-LX; large subunit ribosomal protein LX D A3L08_04140 50S ribosomal protein L19 K02885 RP-L19e; large subunit ribosomal protein L19e D A3L08_05720 50S ribosomal protein L21 K02889 RP-L21e; large subunit ribosomal protein L21e D A3L08_08805 50S ribosomal protein L24 K02896 RP-L24e; large subunit ribosomal protein L24e D A3L08_05050 50S ribosomal protein L30 K02908 RP-L30e; large subunit ribosomal protein L30e D A3L08_09500 50S ribosomal protein L31 K02910 RP-L31e; large subunit ribosomal protein L31e D A3L08_04135 rpl32e; 50S ribosomal protein L32 K02912 RP-L32e; large subunit ribosomal protein L32e D A3L08_04180 rpl34e; 50S ribosomal protein L34 K02915 RP-L34e; large subunit ribosomal protein L34e D A3L08_07205 50S ribosomal protein L35 K02917 RP-L35Ae; large subunit ribosomal protein L35Ae D A3L08_07185 rpl37e; 50S ribosomal protein L37 K02922 RP-L37e; large subunit ribosomal protein L37e D A3L08_06050 rpl37ae; 50S ribosomal protein L37Ae K02921 RP-L37Ae; large subunit ribosomal protein L37Ae D A3L08_09505 rpl39e; 50S ribosomal protein L39 K02924 RP-L39e; large subunit ribosomal protein L39e D A3L08_04285 50S ribosomal protein L40 K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e D A3L08_03460 LSU ribosomal protein L41E K02928 RP-L41e; large subunit ribosomal protein L41e D A3L08_05130 50S ribosomal protein L44 K02929 RP-L44e; large subunit ribosomal protein L44e D A3L08_04820 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D A3L08_04060 rpl2p; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D A3L08_04045 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D A3L08_04115 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D A3L08_04130 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D A3L08_04825 rplP0; acidic ribosomal protein P0 K02864 RP-L10; large subunit ribosomal protein L10 D A3L08_04815 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D A3L08_04830 rpl12p; 50S ribosomal protein P1 K02869 RP-L12; large subunit ribosomal protein L12 D A3L08_04245 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D A3L08_04100 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D A3L08_04160 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D A3L08_04145 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D A3L08_04070 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D A3L08_04055 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D A3L08_04105 rpl24p; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D A3L08_04080 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D A3L08_04155 rpl30p; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 C 00970 Aminoacyl-tRNA biosynthesis [PATH:tpaf00970] D A3L08_00920 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D A3L08_01225 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D A3L08_04565 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D A3L08_00795 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D A3L08_04305 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D A3L08_04360 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D A3L08_04835 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D A3L08_08855 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D A3L08_05020 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D A3L08_03640 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D A3L08_05090 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D A3L08_02000 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D A3L08_03425 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D A3L08_03130 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D A3L08_07675 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D A3L08_00710 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D A3L08_01420 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D A3L08_04365 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D A3L08_01625 tRNA-His K14226 tRNA-His; tRNA His D A3L08_03135 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D A3L08_00210 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D A3L08_04235 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D A3L08_04280 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D A3L08_05435 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D A3L08_09225 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D A3L08_03645 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D A3L08_09220 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D A3L08_05025 tRNA-Met K14230 tRNA-Met; tRNA Met D A3L08_06370 tRNA-Met K14230 tRNA-Met; tRNA Met D A3L08_09080 tRNA-Met K14230 tRNA-Met; tRNA Met D A3L08_00705 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D A3L08_03435 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D A3L08_04260 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D A3L08_04760 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D A3L08_04210 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D A3L08_05095 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D A3L08_05505 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D A3L08_07390 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D A3L08_04765 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D A3L08_05015 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D A3L08_07505 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D A3L08_01475 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D A3L08_01565 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D A3L08_00785 tRNA-Val K14237 tRNA-Val; tRNA Val D A3L08_04560 tRNA-Val K14237 tRNA-Val; tRNA Val D A3L08_07045 tRNA-Val K14237 tRNA-Val; tRNA Val D A3L08_04870 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D A3L08_05705 glutamyl-tRNA(Gln) amidotransferase subunit D K09482 gatD; glutamyl-tRNA(Gln) amidotransferase subunit D [EC:6.3.5.7] D A3L08_05700 glutamyl-tRNA amidotransferase K03330 gatE; glutamyl-tRNA(Gln) amidotransferase subunit E [EC:6.3.5.7] D A3L08_01040 alanyl-tRNA editing protein AlaX K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D A3L08_02465 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D A3L08_02615 alanyl-tRNA editing protein AlaX K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D A3L08_08395 alanyl-tRNA editing protein AlaX K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D A3L08_04595 aspC; aspartate--tRNA(Asn) ligase K22503 DARS1; aspartyl-tRNA synthetase [EC:6.1.1.12] D A3L08_04010 asparagine synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D A3L08_08850 asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D A3L08_07170 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D A3L08_05575 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D A3L08_09410 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D A3L08_06865 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D A3L08_06740 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D A3L08_07660 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D A3L08_04440 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D A3L08_02875 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D A3L08_00890 lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D A3L08_06285 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D A3L08_06695 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D A3L08_02445 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D A3L08_05675 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D A3L08_05670 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D A3L08_08965 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D A3L08_02120 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport [PATH:tpaf03013] D A3L08_07380 tuf; elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha D A3L08_05390 Nonsense-mediated mRNA decay NMD3 like protein K07562 NMD3; 60S ribosomal export protein NMD3 C 03015 mRNA surveillance pathway [PATH:tpaf03015] D A3L08_06295 peptide chain release factor 1 K03265 ETF1; peptide chain release factor subunit 1 D A3L08_07220 mRNA surveillance protein Pelota K06965 PELO; protein pelota C 03008 Ribosome biogenesis in eukaryotes [PATH:tpaf03008] D A3L08_06040 ribosomal biogenesis protein K14561 IMP4; U3 small nucleolar ribonucleoprotein protein IMP4 D A3L08_00545 C/D box methylation guide ribonucleoprotein complex aNOP56 subunit K14564 NOP56; nucleolar protein 56 D A3L08_05145 ribosome biogenesis protein K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3 D A3L08_05830 16S rRNA methyltransferase K14568 EMG1; rRNA small subunit pseudouridine methyltransferase Nep1 [EC:2.1.1.260] D A3L08_04090 ribonuclease P K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5] D A3L08_02840 ribonuclease P protein component 2 K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5] D A3L08_04465 ribonuclease P protein component 3 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5] D A3L08_05475 hypothetical protein K06943 NOG1; nucleolar GTP-binding protein D A3L08_05390 Nonsense-mediated mRNA decay NMD3 like protein K07562 NMD3; 60S ribosomal export protein NMD3 D A3L08_09495 translation initiation factor 6 K03264 EIF6; translation initiation factor 6 D A3L08_03850 rRNA metabolism protein K14574 SDO1; ribosome maturation protein SDO1 D A3L08_09130 kinase K18532 AK6; adenylate kinase [EC:2.7.4.3] D A3L08_07325 hypothetical protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D A3L08_00845 tyrosine protein kinase K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1] B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:tpaf03060] D A3L08_04165 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D A3L08_02560 preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D A3L08_02555 preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D A3L08_04335 signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D A3L08_00690 ffs; signal recognition particle sRNA K01983 ffs; signal recognition particle 4.5S RNA D A3L08_06815 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D A3L08_04805 secE; preprotein translocase subunit SecE K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins D A3L08_00310 signal recognition particle K03105 SRP19; signal recognition particle subunit SRP19 D A3L08_08440 anion transporter K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D A3L08_01640 S26 family signal peptidase K13280 SEC11; signal peptidase I [EC:3.4.21.89] D A3L08_03400 S26 family signal peptidase K13280 SEC11; signal peptidase I [EC:3.4.21.89] C 04141 Protein processing in endoplasmic reticulum [PATH:tpaf04141] D A3L08_04805 secE; preprotein translocase subunit SecE K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins D A3L08_09425 AAA family ATPase K13525 VCP; transitional endoplasmic reticulum ATPase D A3L08_09540 AAA family ATPase K13525 VCP; transitional endoplasmic reticulum ATPase D A3L08_09535 heat-shock protein K13993 HSP20; HSP20 family protein D A3L08_05140 translation initiation factor IF-2 subunit alpha K03237 EIF2S1; translation initiation factor 2 subunit 1 C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis D A3L08_04285 50S ribosomal protein L40 K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e D A3L08_03360 30S ribosomal protein S27 K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae C 04122 Sulfur relay system [PATH:tpaf04122] D A3L08_01920 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D A3L08_00960 cyclic pyranopterin phosphate synthase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D A3L08_01935 molybdopterin synthase sulfur carrier subunit K03636 moaD; sulfur-carrier protein D A3L08_05290 molybdopterin synthase sulfur carrier subunit K03636 moaD; sulfur-carrier protein D A3L08_07395 molybdopterin synthase sulfur carrier subunit K03636 moaD; sulfur-carrier protein D A3L08_01930 adenylyltransferase K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D A3L08_07570 molybdenum cofactor biosynthesis protein MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D A3L08_07655 molybdenum cofactor biosynthesis protein K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D A3L08_09285 tRNA 4-thiouridine(8) synthase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D A3L08_09295 hypothetical protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D A3L08_02905 thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein D A3L08_05100 thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein D A3L08_09545 metalloprotease C 03050 Proteasome [PATH:tpaf03050] D A3L08_00835 proteasome-activating nucleotidase K03420 psmR; proteasome regulatory subunit D A3L08_03845 proteasome subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D A3L08_01010 proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D A3L08_04535 proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1] C 03018 RNA degradation [PATH:tpaf03018] D A3L08_05580 RNA-binding protein K07573 CSL4; exosome complex component CSL4 D A3L08_03855 RNA-binding protein K03679 RRP4; exosome complex component RRP4 D A3L08_03865 RNA-binding protein K12589 RRP42; exosome complex component RRP42 D A3L08_03860 exonuclease K11600 RRP41; exosome complex component RRP41 D A3L08_01875 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D A3L08_04270 hypothetical protein K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D A3L08_09215 hypothetical protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D A3L08_04420 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] D A3L08_08655 MBL fold metallo-hydrolase K12574 rnj; ribonuclease J [EC:3.1.-.-] B B 09124 Replication and repair C 03030 DNA replication [PATH:tpaf03030] D A3L08_04865 hypothetical protein K02316 dnaG; DNA primase [EC:2.7.7.101] D A3L08_07305 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D A3L08_03720 DNA polymerase K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D A3L08_02015 DNA polymerase II K02323 polB; DNA polymerase II small subunit [EC:2.7.7.7] D A3L08_02010 DNA polymerase II large subunit K02322 polC; DNA polymerase II large subunit [EC:2.7.7.7] D A3L08_03925 DNA replication licensing factor K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3] D A3L08_02725 DNA primase K02683 priS; DNA primase small subunit [EC:2.7.7.102] D A3L08_02730 DNA primase K18882 priL; DNA primase large subunit D A3L08_07950 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen D A3L08_00980 Replication factor C small subunit K04801 rfcS; replication factor C small subunit D A3L08_00975 replication protein C K04800 rfcL; replication factor C large subunit D A3L08_09450 flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D A3L08_01510 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C 03410 Base excision repair [PATH:tpaf03410] D A3L08_09335 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D A3L08_07950 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen D A3L08_09450 flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D A3L08_01510 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D A3L08_09150 3-methyladenine DNA glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D A3L08_01525 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D A3L08_03680 hypothetical protein K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D A3L08_06385 single-stranded DNA endonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] C 03420 Nucleotide excision repair [PATH:tpaf03420] D A3L08_09230 DNA repair helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D A3L08_07950 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen D A3L08_01510 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C 03430 Mismatch repair [PATH:tpaf03430] D A3L08_07580 DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2 D A3L08_06385 single-stranded DNA endonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D A3L08_07950 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen D A3L08_01510 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C 03440 Homologous recombination [PATH:tpaf03440] D A3L08_06385 single-stranded DNA endonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D A3L08_07665 hypothetical protein K06187 recR; recombination protein RecR C 03450 Non-homologous end-joining D A3L08_09450 flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 D A3L08_03375 transcription elongation factor Spt4 K15171 SUPT4H1; transcription elongation factor SPT4 D A3L08_04810 nusG; transcription elongation factor Spt5 K15172 SUPT5H; transcription elongation factor SPT5 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus and Alphavirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03273 Virion - Lassa virus and SFTS virus C 03272 Virion - Hepatitis viruses C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:tpaf02010] D A3L08_09800 molybdate ABC transporter substrate-binding protein K15495 wtpA; molybdate/tungstate transport system substrate-binding protein D A3L08_09785 molybdenum ABC transporter permease K15496 wtpB; molybdate/tungstate transport system permease protein D A3L08_09780 molybdenum ABC transporter ATP-binding protein K15497 wtpC; molybdate/tungstate transport system ATP-binding protein [EC:7.3.2.5 7.3.2.6] D A3L08_08975 ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D A3L08_08980 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein D A3L08_08985 spermidine/putrescine ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D A3L08_08860 ABC transporter substrate-binding protein K02064 thiB; thiamine transport system substrate-binding protein D A3L08_03665 ABC transporter K02063 thiP; thiamine transport system permease protein D A3L08_03660 ABC transporter ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D A3L08_02800 glycerol-3-phosphate ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D A3L08_08220 glycerol-3-phosphate ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D A3L08_02820 maltotriose-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein D A3L08_02815 sugar transporter K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D A3L08_02810 sugar transporter K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D A3L08_06825 sugar-binding protein K07335 bmpA; basic membrane protein A and related proteins D A3L08_06835 ribose ABC transporter permease K23535 nupB; general nucleoside transport system permease protein D A3L08_06840 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein D A3L08_06830 ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D A3L08_05160 cobalt transporter K02009 cbiN; cobalt/nickel transport protein D A3L08_05155 cobalamin biosynthesis protein K02007 cbiM; cobalt/nickel transport system permease protein D A3L08_05165 cobalt ABC transporter permease K02008 cbiQ; cobalt/nickel transport system permease protein D A3L08_05170 cobalt ABC transporter ATP-binding protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein D A3L08_08920 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component D A3L08_08935 cobalt ABC transporter permease K16785 ecfT; energy-coupling factor transport system permease protein D A3L08_05520 energy-coupling factor ABC transporter ATP-binding protein K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D A3L08_08930 ABC transporter ATP-binding protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D A3L08_07755 permease K16905 K16905; fluoroquinolone transport system permease protein D A3L08_07750 hypothetical protein K16906 K16906; fluoroquinolone transport system permease protein D A3L08_07745 ATP-binding protein K16907 K16907; fluoroquinolone transport system ATP-binding protein [EC:7.6.2.-] C 02060 Phosphotransferase system (PTS) C 03070 Bacterial secretion system [PATH:tpaf03070] D A3L08_02560 preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D A3L08_02555 preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D A3L08_04165 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D A3L08_06815 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D A3L08_04335 signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] B B 09132 Signal transduction C 02020 Two-component system [PATH:tpaf02020] D A3L08_01280 hypothetical protein K07793 tctA; putative tricarboxylic transport membrane protein D A3L08_00585 apo-citrate lyase phosphoribosyl-dephospho-CoA transferase K05966 citG; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52] D A3L08_01230 malate dehydrogenase K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D A3L08_04510 transcriptional regulator K04751 glnB; nitrogen regulatory protein P-II 1 D A3L08_02695 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D A3L08_00525 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D A3L08_06260 UDP-N-acetyl glucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D A3L08_06265 NDP-sugar dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04082 Neuroactive ligand signaling C 04081 Hormone signaling C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome D A3L08_04805 secE; preprotein translocase subunit SecE K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins C 04142 Lysosome C 04146 Peroxisome D A3L08_04385 mevalonate kinase K00869 MVK; mevalonate kinase [EC:2.7.1.36] C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:tpaf02024] D A3L08_00300 DNA-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D A3L08_02655 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D A3L08_06960 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D A3L08_07085 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D A3L08_00295 peptide ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D A3L08_01690 hypothetical protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D A3L08_02150 peptide ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D A3L08_02625 hypothetical protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D A3L08_02660 peptide ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D A3L08_06955 peptide ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D A3L08_00290 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D A3L08_01685 hypothetical protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D A3L08_02155 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D A3L08_02620 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D A3L08_02665 peptide transporter K02034 ABC.PE.P1; peptide/nickel transport system permease protein D A3L08_06950 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D A3L08_00285 dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D A3L08_02670 dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D A3L08_06945 dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D A3L08_02675 oligopeptide ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D A3L08_04165 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D A3L08_06815 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D A3L08_04335 signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis C 02040 Flagellar assembly C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D A3L08_01875 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D A3L08_04270 hypothetical protein K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04981 Folate transport and metabolism D A3L08_07920 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 04980 Cobalamin transport and metabolism [PATH:tpaf04980] D A3L08_07120 cobalamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D A3L08_09040 GTPase K07588 MMAA; GTPase [EC:3.6.5.-] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation C 04382 Cornified envelope formation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance C 01502 Vancomycin resistance C 01503 Cationic antimicrobial peptide (CAMP) resistance B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:tpaf01000] C 01001 Protein kinases [BR:tpaf01001] D A3L08_07585 O-sialoglycoprotein endopeptidase K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1] D A3L08_07325 hypothetical protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D A3L08_00845 tyrosine protein kinase K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1] C 01009 Protein phosphatases and associated proteins [BR:tpaf01009] D A3L08_03920 translation initiation factor IF-2 subunit beta K03238 EIF2S2; translation initiation factor 2 subunit 2 D A3L08_09770 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D A3L08_09740 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:tpaf01002] D A3L08_09735 transposase K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52] D A3L08_06455 protein frxA K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-] D A3L08_05320 hydrogenase 3 maturation endopeptidase HyCI K08315 hycI; hydrogenase 3 maturation protease [EC:3.4.23.51] D A3L08_02250 pyroglutamyl-peptidase I K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3] D A3L08_03285 GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D A3L08_03290 GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D A3L08_00560 gamma-glutamyl-gamma-aminobutyrate hydrolase K07010 K07010; putative glutamine amidotransferase D A3L08_03230 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D A3L08_07285 glutamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D A3L08_09375 asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D A3L08_00605 peptidase K26818 pfpI; archaeal arginyl aminopeptidase [EC:3.4.11.27] D A3L08_06875 CAAX protease K07052 K07052; CAAX protease family protein D A3L08_09630 hypothetical protein K07052 K07052; CAAX protease family protein D A3L08_01655 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D A3L08_02770 diaminopimelate aminotransferase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D A3L08_04430 peptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D A3L08_05510 type II methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D A3L08_02235 peptidase M32 K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19] D A3L08_05540 peptidase M42 K20608 tet; tetrahedral aminopeptidase [EC:3.4.11.-] D A3L08_09245 peptidase M42 K20608 tet; tetrahedral aminopeptidase [EC:3.4.11.-] D A3L08_00805 zinc metallopeptidase K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D A3L08_07600 protease K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D A3L08_07815 peptidase M54 K06974 amzA; archaemetzincin [EC:3.4.-.-] D A3L08_09210 peptide transporter K16203 dppA1; D-amino peptidase [EC:3.4.11.-] D A3L08_04975 hypothetical protein K24131 prsW; protease PrsW [EC:3.4.-.-] D A3L08_07010 peptidase S9 K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26] D A3L08_06440 ATP-dependent protease LonB K04076 lonB; ATP-dependent Lon protease [EC:3.4.21.53] D A3L08_01640 S26 family signal peptidase K13280 SEC11; signal peptidase I [EC:3.4.21.89] D A3L08_03400 S26 family signal peptidase K13280 SEC11; signal peptidase I [EC:3.4.21.89] D A3L08_05610 peptidase K04773 sppA; protease IV [EC:3.4.21.-] D A3L08_03845 proteasome subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D A3L08_01010 proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D A3L08_04535 proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D A3L08_00865 asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D A3L08_01170 peptidase K03592 pmbA; PmbA protein D A3L08_07725 TldD/PmbA family protein K03592 pmbA; PmbA protein D A3L08_07870 TldE-like protein K03592 pmbA; PmbA protein D A3L08_01185 TLDD - like protein K03568 tldD; TldD protein D A3L08_07730 TldD-like protein K03568 tldD; TldD protein D A3L08_07865 TldD-like protein K03568 tldD; TldD protein C 01003 Glycosyltransferases [BR:tpaf01003] D A3L08_00825 UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase K01001 ALG7; UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [EC:2.7.8.15] D A3L08_07280 peptide transporter K21306 aglB; dolichyl-phosphooligosaccharide-protein glycotransferase [EC:2.4.99.21] D A3L08_03440 dolichol monophosphate mannose synthase K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83] D A3L08_02315 glycosyltransferase K13658 gumI; beta-1,4-mannosyltransferase [EC:2.4.1.251] D A3L08_08310 glycosyl transferase K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-] C 01005 Lipopolysaccharide biosynthesis proteins [BR:tpaf01005] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:tpaf01011] D A3L08_05485 bacilysin biosynthesis protein BacA K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] C 01004 Lipid biosynthesis proteins [BR:tpaf01004] D A3L08_06105 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D A3L08_07605 sugar dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D A3L08_00460 acetyl-CoA synthetase K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D A3L08_02115 CoA-binding protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D A3L08_09315 CoA-binding protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D A3L08_09440 acetyl CoA synthetase K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D A3L08_04670 acetyl-CoA synthetase K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D A3L08_09310 acetyl-CoA synthetase K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] C 01008 Polyketide biosynthesis proteins [BR:tpaf01008] D A3L08_07765 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13] C 01006 Prenyltransferases [BR:tpaf01006] D A3L08_04425 serralysin K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] C 01007 Amino acid related enzymes [BR:tpaf01007] D A3L08_00890 lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D A3L08_04870 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D A3L08_08965 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D A3L08_02120 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D A3L08_06865 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D A3L08_06285 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D A3L08_06740 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D A3L08_02875 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D A3L08_07660 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D A3L08_04440 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D A3L08_04595 aspC; aspartate--tRNA(Asn) ligase K22503 DARS1; aspartyl-tRNA synthetase [EC:6.1.1.12] D A3L08_04010 asparagine synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D A3L08_08850 asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D A3L08_02445 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D A3L08_07170 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D A3L08_09410 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D A3L08_06695 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D A3L08_05575 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D A3L08_01040 alanyl-tRNA editing protein AlaX K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D A3L08_02465 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D A3L08_02615 alanyl-tRNA editing protein AlaX K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D A3L08_08395 alanyl-tRNA editing protein AlaX K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D A3L08_05675 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D A3L08_05670 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D A3L08_00190 aromatic amino acid aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D A3L08_06685 aromatic amino acid aminotransferase K10907 K10907; aminotransferase [EC:2.6.1.-] D A3L08_05895 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D A3L08_00985 8-amino-7-oxononanoate synthase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D A3L08_01845 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D A3L08_02450 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D A3L08_06150 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D A3L08_04020 aspartate aminotransferase K28205 E2.6.1.52; phosphoserine transaminase [EC:2.6.1.52] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:tpaf03000] D A3L08_00485 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D A3L08_00610 transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D A3L08_01480 transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D A3L08_06145 transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D A3L08_06420 transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D A3L08_07100 transcriptional regulator K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor D A3L08_00070 transcriptional regulator K07721 K07721; ArsR family transcriptional regulator D A3L08_04740 transcriptional regulator K07721 K07721; ArsR family transcriptional regulator D A3L08_01075 phosphomethylpyrimidine kinase K22206 thiR; XRE family transcriptional regulator, thiamine biosynthesis regulator D A3L08_03490 transcriptional regulator K10947 K10947; PadR family transcriptional regulator D A3L08_03780 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator D A3L08_04290 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator D A3L08_03650 iron-dependent repressor K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D A3L08_08410 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D A3L08_08925 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D A3L08_02830 transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D A3L08_04645 transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D A3L08_08215 hypothetical protein K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D A3L08_01560 transcriptional regulator K09714 tfx; HTH-type transcriptional regulator, fmd operon transcriptional regulator D A3L08_07635 transcriptional regulator K07728 K07728; putative transcriptional regulator D A3L08_00235 transcriptional regulator K07729 K07729; putative transcriptional regulator D A3L08_00775 XRE family transcriptional regulator K07731 K07731; putative transcriptional regulator D A3L08_04490 nickel-responsive regulator K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator D A3L08_08000 nickel-responsive regulator K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator C 03021 Transcription machinery [BR:tpaf03021] D A3L08_00095 tfb; transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D A3L08_09455 tfb; transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D A3L08_00485 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D A3L08_01355 transcription factor K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha D A3L08_09230 DNA repair helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D A3L08_03375 transcription elongation factor Spt4 K15171 SUPT4H1; transcription elongation factor SPT4 D A3L08_04810 nusG; transcription elongation factor Spt5 K15172 SUPT5H; transcription elongation factor SPT5 D A3L08_09370 GTPase K24104 GPN; GPN-loop GTPase D A3L08_05055 transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA D A3L08_05040 DNA-directed RNA polymerase subunit A' K03041 rpoA1; DNA-directed RNA polymerase subunit A' [EC:2.7.7.6] D A3L08_05045 DNA-directed RNA polymerase subunit A'' K03042 rpoA2; DNA-directed RNA polymerase subunit A" [EC:2.7.7.6] D A3L08_05035 DNA-directed RNA polymerase subunit B K13798 rpoB; DNA-directed RNA polymerase subunit B [EC:2.7.7.6] D A3L08_04230 DNA-directed RNA polymerase subunit D K03047 rpoD; DNA-directed RNA polymerase subunit D [EC:2.7.7.6] D A3L08_03380 DNA-directed RNA polymerase K03049 rpoE1; DNA-directed RNA polymerase subunit E' [EC:2.7.7.6] D A3L08_05725 DNA-directed RNA polymerase subunit F K03051 rpoF; DNA-directed RNA polymerase subunit F [EC:2.7.7.6] D A3L08_05030 DNA-directed RNA polymerase subunit H K03053 rpoH; DNA-directed RNA polymerase subunit H [EC:2.7.7.6] D A3L08_04265 DNA-directed RNA polymerase subunit K K03055 rpoK; DNA-directed RNA polymerase subunit K [EC:2.7.7.6] D A3L08_05590 DNA-directed RNA polymerase subunit L K03056 rpoL; DNA-directed RNA polymerase subunit L [EC:2.7.7.6] D A3L08_04255 DNA-directed RNA polymerase subunit N K03058 rpoN; DNA-directed RNA polymerase subunit N [EC:2.7.7.6] D A3L08_06045 DNA-directed RNA polymerase subunit P K03059 rpoP; DNA-directed RNA polymerase subunit P [EC:2.7.7.6] D A3L08_07940 transcription factor S K03057 tfs; transcription factor S C 03019 Messenger RNA biogenesis [BR:tpaf03019] D A3L08_03375 transcription elongation factor Spt4 K15171 SUPT4H1; transcription elongation factor SPT4 D A3L08_04810 nusG; transcription elongation factor Spt5 K15172 SUPT5H; transcription elongation factor SPT5 D A3L08_09425 AAA family ATPase K13525 VCP; transitional endoplasmic reticulum ATPase D A3L08_09540 AAA family ATPase K13525 VCP; transitional endoplasmic reticulum ATPase D A3L08_07220 mRNA surveillance protein Pelota K06965 PELO; protein pelota D A3L08_06295 peptide chain release factor 1 K03265 ETF1; peptide chain release factor subunit 1 D A3L08_07380 tuf; elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha D A3L08_05580 RNA-binding protein K07573 CSL4; exosome complex component CSL4 D A3L08_03855 RNA-binding protein K03679 RRP4; exosome complex component RRP4 D A3L08_03860 exonuclease K11600 RRP41; exosome complex component RRP41 D A3L08_03865 RNA-binding protein K12589 RRP42; exosome complex component RRP42 D A3L08_04420 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] D A3L08_08655 MBL fold metallo-hydrolase K12574 rnj; ribonuclease J [EC:3.1.-.-] D A3L08_09215 hypothetical protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D A3L08_01875 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D A3L08_04270 hypothetical protein K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D A3L08_08955 RNA helicase K03725 K03725; putative ATP-dependent RNA helicase [EC:5.6.2.-] C 03041 Spliceosome [BR:tpaf03041] D A3L08_03875 hypothetical protein K06874 ZPR1; zinc finger protein ZPR1 C 03011 Ribosome [BR:tpaf03011] D A3L08_06395 30S ribosomal protein S3Ae K02984 RP-S3Ae; small subunit ribosomal protein S3Ae D A3L08_04110 30S ribosomal protein S4e K02987 RP-S4e; small subunit ribosomal protein S4e D A3L08_03575 30S ribosomal protein S6 K02991 RP-S6e; small subunit ribosomal protein S6e D A3L08_05465 30S ribosomal protein S8e K02995 RP-S8e; small subunit ribosomal protein S8e D A3L08_00065 30S ribosomal protein S17e K02962 RP-S17e; small subunit ribosomal protein S17e D A3L08_09475 30S ribosomal protein S19 K02966 RP-S19e; small subunit ribosomal protein S19e D A3L08_03365 30S ribosomal protein S24 K02974 RP-S24e; small subunit ribosomal protein S24e D A3L08_05135 rps27e; 30S ribosomal protein S27 K02978 RP-S27e; small subunit ribosomal protein S27e D A3L08_03360 30S ribosomal protein S27 K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae D A3L08_08810 30S ribosomal protein S28 K02979 RP-S28e; small subunit ribosomal protein S28e D A3L08_04050 rpl4lp; 50S ribosomal protein L4 K02930 RP-L4e; large subunit ribosomal protein L4e D A3L08_08815 rpl7ae; 50S ribosomal protein L7Ae K02936 RP-L7Ae; large subunit ribosomal protein L7Ae D A3L08_04030 50S ribosomal protein L16 K02866 RP-L10e; large subunit ribosomal protein L10e D A3L08_04190 50S ribosomal protein L14e K02875 RP-L14e; large subunit ribosomal protein L14e D A3L08_04455 50S ribosomal protein L15e K02877 RP-L15e; large subunit ribosomal protein L15e D A3L08_04240 50S ribosomal protein L18e K02883 RP-L18e; large subunit ribosomal protein L18e D A3L08_04140 50S ribosomal protein L19 K02885 RP-L19e; large subunit ribosomal protein L19e D A3L08_05720 50S ribosomal protein L21 K02889 RP-L21e; large subunit ribosomal protein L21e D A3L08_08805 50S ribosomal protein L24 K02896 RP-L24e; large subunit ribosomal protein L24e D A3L08_05050 50S ribosomal protein L30 K02908 RP-L30e; large subunit ribosomal protein L30e D A3L08_09500 50S ribosomal protein L31 K02910 RP-L31e; large subunit ribosomal protein L31e D A3L08_04135 rpl32e; 50S ribosomal protein L32 K02912 RP-L32e; large subunit ribosomal protein L32e D A3L08_04180 rpl34e; 50S ribosomal protein L34 K02915 RP-L34e; large subunit ribosomal protein L34e D A3L08_07205 50S ribosomal protein L35 K02917 RP-L35Ae; large subunit ribosomal protein L35Ae D A3L08_07185 rpl37e; 50S ribosomal protein L37 K02922 RP-L37e; large subunit ribosomal protein L37e D A3L08_06050 rpl37ae; 50S ribosomal protein L37Ae K02921 RP-L37Ae; large subunit ribosomal protein L37Ae D A3L08_09505 rpl39e; 50S ribosomal protein L39 K02924 RP-L39e; large subunit ribosomal protein L39e D A3L08_04285 50S ribosomal protein L40 K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e D A3L08_03460 LSU ribosomal protein L41E K02928 RP-L41e; large subunit ribosomal protein L41e D A3L08_05130 50S ribosomal protein L44 K02929 RP-L44e; large subunit ribosomal protein L44e D A3L08_04275 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D A3L08_04075 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D A3L08_04220 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D A3L08_04150 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D A3L08_05065 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D A3L08_04125 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D A3L08_04250 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D A3L08_07385 rps10p; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D A3L08_04225 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D A3L08_05060 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D A3L08_04215 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D A3L08_04120 rps14P; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D A3L08_06380 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D A3L08_04095 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D A3L08_04065 rps19p; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D A3L08_04820 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D A3L08_04060 rpl2p; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D A3L08_04045 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D A3L08_04115 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D A3L08_04130 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D A3L08_04825 rplP0; acidic ribosomal protein P0 K02864 RP-L10; large subunit ribosomal protein L10 D A3L08_04815 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D A3L08_04245 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D A3L08_04100 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D A3L08_04160 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D A3L08_04145 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D A3L08_04070 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D A3L08_04055 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D A3L08_04105 rpl24p; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D A3L08_04080 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D A3L08_04155 rpl30p; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D A3L08_04830 rpl12p; 50S ribosomal protein P1 K02869 RP-L12; large subunit ribosomal protein L12 D A3L08_09490 50S ribosomal protein L18a K02944 RP-LX; large subunit ribosomal protein LX D A3L08_00925 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D A3L08_00915 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D A3L08_03635 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D A3L08_09750 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 03009 Ribosome biogenesis [BR:tpaf03009] D A3L08_00545 C/D box methylation guide ribonucleoprotein complex aNOP56 subunit K14564 NOP56; nucleolar protein 56 D A3L08_05145 ribosome biogenesis protein K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3 D A3L08_06040 ribosomal biogenesis protein K14561 IMP4; U3 small nucleolar ribonucleoprotein protein IMP4 D A3L08_05830 16S rRNA methyltransferase K14568 EMG1; rRNA small subunit pseudouridine methyltransferase Nep1 [EC:2.1.1.260] D A3L08_07330 RNA-processing protein K06961 KRR1; ribosomal RNA assembly protein D A3L08_07325 hypothetical protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D A3L08_00845 tyrosine protein kinase K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1] D A3L08_09130 kinase K18532 AK6; adenylate kinase [EC:2.7.4.3] D A3L08_07470 ATPase K06174 ABCE1; ATP-binding cassette, sub-family E, member 1 D A3L08_05475 hypothetical protein K06943 NOG1; nucleolar GTP-binding protein D A3L08_04090 ribonuclease P K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5] D A3L08_02840 ribonuclease P protein component 2 K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5] D A3L08_04465 ribonuclease P protein component 3 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5] D A3L08_03600 polyhydroxyalkanoate depolymerase K06947 GRC3; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 [EC:2.7.1.-] D A3L08_09495 translation initiation factor 6 K03264 EIF6; translation initiation factor 6 D A3L08_05390 Nonsense-mediated mRNA decay NMD3 like protein K07562 NMD3; 60S ribosomal export protein NMD3 D A3L08_03850 rRNA metabolism protein K14574 SDO1; ribosome maturation protein SDO1 D A3L08_09425 AAA family ATPase K13525 VCP; transitional endoplasmic reticulum ATPase D A3L08_09540 AAA family ATPase K13525 VCP; transitional endoplasmic reticulum ATPase D A3L08_02535 hypothetical protein K07565 NIP7; 60S ribosome subunit biogenesis protein NIP7 D A3L08_09815 GTP-binding protein K03595 era; GTPase D A3L08_00540 fibrillin K04795 flpA; fibrillarin-like pre-rRNA processing protein D A3L08_08815 rpl7ae; 50S ribosomal protein L7Ae K02936 RP-L7Ae; large subunit ribosomal protein L7Ae D A3L08_00100 H/ACA RNA-protein complex protein Gar1 K07569 gar1; RNA-binding protein D A3L08_05055 transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA D A3L08_05735 16S rRNA methyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D A3L08_03530 Fmu (Sun) domain-containing protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D A3L08_03705 SAM-dependent tRNA/rRNA cytosine-C5 methylase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D A3L08_04205 16S rRNA methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D A3L08_02755 rRNA methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D A3L08_08780 23S rRNA (uracil-5-)-methyltransferase RumA K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189] D A3L08_00995 ribosomal-protein-alanine N-acetyltransferase RimI K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D A3L08_00950 RNA-binding protein K22469 fau-1; ribonuclease FAU-1 [EC:3.1.26.-] D A3L08_09215 hypothetical protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D A3L08_01295 GTP-binding protein HflX K03665 hflX; GTPase D A3L08_09390 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D A3L08_09480 RNA-binding protein K07574 yhbY; RNA-binding protein D A3L08_07780 ychF; translation-associated GTPase K06942 ychF; ribosome-binding ATPase C 03016 Transfer RNA biogenesis [BR:tpaf03016] D A3L08_04090 ribonuclease P K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5] D A3L08_02840 ribonuclease P protein component 2 K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5] D A3L08_04465 ribonuclease P protein component 3 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5] D A3L08_09760 ribonuclease P K03540 RPR2; ribonuclease P protein subunit RPR2 [EC:3.1.26.5] D A3L08_05210 ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11] D A3L08_07550 RNA-splicing ligase RtcB K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8] D A3L08_07535 archease K24956 ZBTB8OS; protein archease D A3L08_07380 tuf; elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha D A3L08_04870 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D A3L08_06695 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D A3L08_02875 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D A3L08_04440 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D A3L08_06740 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D A3L08_06285 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D A3L08_04595 aspC; aspartate--tRNA(Asn) ligase K22503 DARS1; aspartyl-tRNA synthetase [EC:6.1.1.12] D A3L08_01040 alanyl-tRNA editing protein AlaX K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D A3L08_02465 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D A3L08_02615 alanyl-tRNA editing protein AlaX K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D A3L08_08395 alanyl-tRNA editing protein AlaX K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D A3L08_04010 asparagine synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D A3L08_08850 asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D A3L08_07170 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D A3L08_05575 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D A3L08_09410 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D A3L08_06865 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D A3L08_07660 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D A3L08_02445 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D A3L08_05675 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D A3L08_05670 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D A3L08_08965 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D A3L08_02120 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D A3L08_04795 D-tyrosyl-tRNA(Tyr) deacylase K09716 dtdA; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D A3L08_01725 threonylcarbamoyladenosine tRNA methylthiotransferase K15865 CDKAL1; threonylcarbamoyladenosine tRNA methylthiotransferase [EC:2.8.4.5] D A3L08_07200 tRNA (guanine(10)-N(2))-dimethyltransferase K00555 TRMT1; tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase [EC:2.1.1.215 2.1.1.216] D A3L08_01955 Sun/NOL1/NOP nucleolar protein K21971 NSUN6; methyltransferase NSUN6 [EC:2.1.1.-] D A3L08_00970 tRNA (guanine-N1)-methyltransferase K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D A3L08_07715 tRNA (guanine-N1)-methyltransferase K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D A3L08_00320 tRNA methyltransferase K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220] D A3L08_03350 wyosine biosynthesis protein TYW1 K15449 TYW1; tRNA wybutosine-synthesizing protein 1 [EC:4.1.3.44] D A3L08_07405 hypothetical protein K07055 TRM12; tRNA wybutosine-synthesizing protein 2 [EC:2.5.1.114] D A3L08_01630 hypothetical protein K15450 TYW3; tRNA wybutosine-synthesizing protein 3 [EC:2.1.1.282] D A3L08_03175 hypothetical protein K15450 TYW3; tRNA wybutosine-synthesizing protein 3 [EC:2.1.1.282] D A3L08_05665 tRNA pseudouridine(38,39,40) synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D A3L08_04200 tRNA pseudouridine(55) synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D A3L08_04580 tRNA pseudouridine(13) synthase TruD K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] D A3L08_05715 tRNA pseudouridine(54/55) synthase Pus10 K07583 PUS10; tRNA pseudouridine synthase 10 [EC:5.4.99.25] D A3L08_07585 O-sialoglycoprotein endopeptidase K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1] D A3L08_01975 UGMP family protein K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234] D A3L08_02500 radical SAM protein K07739 ELP3; elongator complex protein 3 (tRNA carboxymethyluridine synthase) [EC:2.3.1.311] D A3L08_09390 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D A3L08_01820 RNA-binding protein K06963 TAN1; tRNA acetyltransferase TAN1 D A3L08_06400 hypothetical protein K06963 TAN1; tRNA acetyltransferase TAN1 D A3L08_02715 rnpB; RNase P RNA component K01978 rnpB; RNase P catalytic RNA component D A3L08_04770 RNA ligase partner protein K09006 K09006; RNA-free ribonuclease P [EC:3.1.26.5] D A3L08_02920 CCA-adding protein K07558 K07558; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72] D A3L08_00990 tRNA-intron lyase K01170 endA; tRNA-intron endonuclease, archaea type [EC:4.6.1.16] D A3L08_02925 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D A3L08_00650 RNA 2'-phosphotransferase K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-] D A3L08_00890 lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D A3L08_01260 RNA methyltransferase K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-] D A3L08_01485 23S rRNA (uracil-5-)-methyltransferase RumA K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35] D A3L08_07260 tRNA (pseudouridine(54)-N(1))-methyltransferase TrmY K16317 trmY; tRNA (pseudouridine54-N1)-methyltransferase [EC:2.1.1.257] D A3L08_05850 SAM-dependent tRNA/rRNA cytosine-C5 methylase K22901 trm4; tRNA (cytosine40_48-C5)-methyltransferase [EC:2.1.1.-] D A3L08_07670 tRNA (guanine-N2)-dimethyltransferase K15566 trm10; tRNA (adenine9-N1/guanine9-N1)-methyltransferase [EC:2.1.1.218 2.1.1.221] D A3L08_02145 DNA methyltransferase K16318 trm14; tRNA (guanine6-N2)-methyltransferase [EC:2.1.1.256] D A3L08_08385 tRNA (guanine-N2)-dimethyltransferase K07446 trm-G10; tRNA (guanine10-N2)-dimethyltransferase [EC:2.1.1.213] D A3L08_09705 tRNA (cytidine(56)-2'-O)-methyltransferase K07254 atrm56; tRNA (cytidine56-2'-O)-methyltransferase [EC:2.1.1.206] D A3L08_07540 tRNA methyltransferase K22446 K22446; tRNA (cytosine49-C5)-methyltransferase [EC:2.1.1.-] D A3L08_02415 hypothetical protein K21947 ttuA; tRNA-5-methyluridine54 2-sulfurtransferase [EC:2.8.1.15] D A3L08_00185 hypothetical protein K09119 cgi121; KEOPS complex subunit Cgi121 D A3L08_06035 hypothetical protein K09741 pcc1; KEOPS complex subunit Pcc1 D A3L08_00700 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D A3L08_08555 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D A3L08_06065 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D A3L08_07040 tRNA-guanine(15) transglycosylase K18779 tgtA; 7-cyano-7-deazaguanine tRNA-ribosyltransferase [EC:2.4.2.48] D A3L08_09285 tRNA 4-thiouridine(8) synthase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D A3L08_09295 hypothetical protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D A3L08_07615 tRNA(Ile2) 2-agmatinylcytidine synthetase K06932 tiaS; tRNA(Ile2)-agmatinylcytidine synthase [EC:6.3.4.22] D A3L08_08880 tRNA(Met) cytidine acetyltransferase K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193] C 03012 Translation factors [BR:tpaf03012] D A3L08_07320 translation initiation factor 1A K03236 EIF1A; translation initiation factor 1A D A3L08_04085 protein translation factor SUI1 K03113 EIF1; translation initiation factor 1 D A3L08_05140 translation initiation factor IF-2 subunit alpha K03237 EIF2S1; translation initiation factor 2 subunit 1 D A3L08_03920 translation initiation factor IF-2 subunit beta K03238 EIF2S2; translation initiation factor 2 subunit 2 D A3L08_03570 translation initiation factor IF-2 subunit gamma K03242 EIF2S3; translation initiation factor 2 subunit 3 D A3L08_07130 translation initiation factor IF-2B subunit alpha K03680 EIF2B4; translation initiation factor eIF-2B subunit delta D A3L08_05820 translation initiation factor IF-5A K03263 EIF5A; translation initiation factor 5A D A3L08_08785 translation initiation factor IF-2 K03243 EIF5B; translation initiation factor 5B D A3L08_09495 translation initiation factor 6 K03264 EIF6; translation initiation factor 6 D A3L08_07380 tuf; elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha D A3L08_03155 effector protein K03232 EEF1B; elongation factor 1-beta D A3L08_07375 fusA; elongation factor EF-2 K03234 EEF2; elongation factor 2 D A3L08_03505 S-adenosyl-L-methionine--L-histidine 3-amino-3-carboxypropyltransferase K07561 DPH1; 2-(3-amino-3-carboxypropyl)histidine synthase [EC:2.5.1.108] D A3L08_00130 hypothetical protein K06927 DPH6; diphthine-ammonia ligase [EC:6.3.1.14] D A3L08_05910 ATP pyrophosphatase K06927 DPH6; diphthine-ammonia ligase [EC:6.3.1.14] D A3L08_06295 peptide chain release factor 1 K03265 ETF1; peptide chain release factor subunit 1 D A3L08_03355 protoporphyrinogen oxidase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D A3L08_04585 peptidyl-tRNA hydrolase K04794 PTH2; peptidyl-tRNA hydrolase, PTH2 family [EC:3.1.1.29] C 03110 Chaperones and folding catalysts [BR:tpaf03110] D A3L08_03165 thermosome subunit K22447 cct; archaeal chaperonin D A3L08_07590 thermosome subunit K22447 cct; archaeal chaperonin D A3L08_09535 heat-shock protein K13993 HSP20; HSP20 family protein D A3L08_08470 prefoldin subunit alpha K04797 pfdA; prefoldin alpha subunit D A3L08_06010 prefoldin subunit beta K04798 pfdB; prefoldin beta subunit D A3L08_05300 hypA; hydrogenase nickel incorporation protein K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF D A3L08_06870 peptidylprolyl isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D A3L08_08010 thiol reductase thioredoxin K03671 TXN; thioredoxin C 04131 Membrane trafficking [BR:tpaf04131] D A3L08_08800 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D A3L08_09425 AAA family ATPase K13525 VCP; transitional endoplasmic reticulum ATPase D A3L08_09540 AAA family ATPase K13525 VCP; transitional endoplasmic reticulum ATPase D A3L08_08440 anion transporter K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D A3L08_04805 secE; preprotein translocase subunit SecE K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins D A3L08_05140 translation initiation factor IF-2 subunit alpha K03237 EIF2S1; translation initiation factor 2 subunit 1 D A3L08_07805 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D A3L08_07380 tuf; elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha C 04121 Ubiquitin system [BR:tpaf04121] D A3L08_04285 50S ribosomal protein L40 K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e D A3L08_03360 30S ribosomal protein S27 K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae C 03051 Proteasome [BR:tpaf03051] D A3L08_03845 proteasome subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D A3L08_01010 proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D A3L08_04535 proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D A3L08_00835 proteasome-activating nucleotidase K03420 psmR; proteasome regulatory subunit C 03032 DNA replication proteins [BR:tpaf03032] D A3L08_07950 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen D A3L08_09450 flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D A3L08_01510 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D A3L08_05145 ribosome biogenesis protein K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3 D A3L08_04865 hypothetical protein K02316 dnaG; DNA primase [EC:2.7.7.101] D A3L08_02020 cell division control protein Cdc6 K10725 cdc6A; archaeal cell division control protein 6 D A3L08_03925 DNA replication licensing factor K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3] D A3L08_02725 DNA primase K02683 priS; DNA primase small subunit [EC:2.7.7.102] D A3L08_02730 DNA primase K18882 priL; DNA primase large subunit D A3L08_03930 hypothetical protein K09723 ginS; DNA replication factor GINS D A3L08_07955 hypothetical protein K09723 ginS; DNA replication factor GINS D A3L08_07305 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D A3L08_03720 DNA polymerase K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D A3L08_02010 DNA polymerase II large subunit K02322 polC; DNA polymerase II large subunit [EC:2.7.7.7] D A3L08_02015 DNA polymerase II K02323 polB; DNA polymerase II small subunit [EC:2.7.7.7] D A3L08_00975 replication protein C K04800 rfcL; replication factor C large subunit D A3L08_00980 Replication factor C small subunit K04801 rfcS; replication factor C small subunit D A3L08_07340 DNA topoisomerase VI K03166 top6A; DNA topoisomerase VI subunit A [EC:5.6.2.2] D A3L08_07335 DNA topoisomerase VI subunit B K03167 top6B; DNA topoisomerase VI subunit B [EC:5.6.2.2] D A3L08_04755 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D A3L08_04650 reverse gyrase K03170 topG; reverse gyrase [EC:5.6.2.2 5.6.2.-] C 03036 Chromosome and associated proteins [BR:tpaf03036] D A3L08_04040 methylase K09142 SPOUT1; methyltransferase [EC:2.1.1.-] D A3L08_09230 DNA repair helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D A3L08_00085 histone K24450 hmf; DNA-binding protein D A3L08_04845 histone K24450 hmf; DNA-binding protein D A3L08_08570 RNA-binding protein K03622 albA; DNA/RNA-binding protein Alba D A3L08_09055 chromosome segregation protein SMC K03529 smc; chromosome segregation protein D A3L08_09060 chromosome segregation protein ScpA K05896 scpA; segregation and condensation protein A D A3L08_03630 SMC-Scp complex subunit ScpB K06024 scpB; segregation and condensation protein B D A3L08_00175 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D A3L08_04800 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D A3L08_01495 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D A3L08_07845 ATPase K03609 minD; septum site-determining protein MinD D A3L08_09170 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D A3L08_09365 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D A3L08_00170 hypothetical protein K03496 parA; chromosome partitioning protein D A3L08_09260 recombinase XerC K04763 xerD; integrase/recombinase XerD D A3L08_01340 ATP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D A3L08_05305 ATP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning C 03400 DNA repair and recombination proteins [BR:tpaf03400] D A3L08_01265 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D A3L08_09335 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D A3L08_07950 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen D A3L08_09450 flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D A3L08_01510 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D A3L08_09230 DNA repair helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D A3L08_00110 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D A3L08_01525 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D A3L08_09150 3-methyladenine DNA glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D A3L08_03680 hypothetical protein K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D A3L08_06655 endonuclease V K05982 nfi; deoxyribonuclease V [EC:3.1.21.7] D A3L08_01400 hypothetical protein K09120 dU; endonuclease dU D A3L08_06385 single-stranded DNA endonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D A3L08_07580 DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2 D A3L08_08755 chromosome segregation protein K03546 sbcC; DNA repair protein SbcC/Rad50 D A3L08_08750 DNA-binding protein K03547 sbcD; DNA repair protein SbcD/Mre11 D A3L08_07665 hypothetical protein K06187 recR; recombination protein RecR D A3L08_02035 DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA D A3L08_00945 DNA repair protein RadB K04484 radB; DNA repair protein RadB D A3L08_05550 Holliday junction resolvase K03552 hjr; holliday junction resolvase [EC:3.1.21.10] D A3L08_08745 DNA helicase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase D A3L08_08760 5'-3' exonuclease K25510 nurA; DNA double-strand break repair nuclease NurA [EC:3.1.-.-] D A3L08_00270 ATP-dependent DNA helicase K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] D A3L08_04755 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D A3L08_07020 helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D A3L08_08640 large helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D A3L08_02945 ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D A3L08_05995 phosphoesterase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] D A3L08_05085 hypothetical protein K22585 nreA; DNA repair protein NreA C 03029 Mitochondrial biogenesis [BR:tpaf03029] D A3L08_04090 ribonuclease P K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5] D A3L08_02840 ribonuclease P protein component 2 K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5] D A3L08_04465 ribonuclease P protein component 3 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5] D A3L08_09815 GTP-binding protein K03595 era; GTPase D A3L08_08965 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D A3L08_04440 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D A3L08_07170 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D A3L08_06285 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D A3L08_01340 ATP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D A3L08_05305 ATP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:tpaf02000] D A3L08_09645 ABC transporter K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D A3L08_09650 ABC transporter K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D A3L08_09800 molybdate ABC transporter substrate-binding protein K15495 wtpA; molybdate/tungstate transport system substrate-binding protein D A3L08_09785 molybdenum ABC transporter permease K15496 wtpB; molybdate/tungstate transport system permease protein D A3L08_09780 molybdenum ABC transporter ATP-binding protein K15497 wtpC; molybdate/tungstate transport system ATP-binding protein [EC:7.3.2.5 7.3.2.6] D A3L08_08975 ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D A3L08_08980 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein D A3L08_08985 spermidine/putrescine ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D A3L08_08860 ABC transporter substrate-binding protein K02064 thiB; thiamine transport system substrate-binding protein D A3L08_03665 ABC transporter K02063 thiP; thiamine transport system permease protein D A3L08_03660 ABC transporter ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D A3L08_02800 glycerol-3-phosphate ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D A3L08_08220 glycerol-3-phosphate ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D A3L08_02820 maltotriose-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein D A3L08_02815 sugar transporter K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D A3L08_02810 sugar transporter K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D A3L08_06825 sugar-binding protein K07335 bmpA; basic membrane protein A and related proteins D A3L08_06835 ribose ABC transporter permease K23535 nupB; general nucleoside transport system permease protein D A3L08_06840 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein D A3L08_06830 ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D A3L08_08190 sugar-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D A3L08_08195 hypothetical protein K02025 ABC.MS.P; multiple sugar transport system permease protein D A3L08_08200 sugar ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D A3L08_00300 DNA-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D A3L08_02655 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D A3L08_06960 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D A3L08_07085 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D A3L08_00295 peptide ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D A3L08_01690 hypothetical protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D A3L08_02150 peptide ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D A3L08_02625 hypothetical protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D A3L08_02660 peptide ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D A3L08_06955 peptide ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D A3L08_00290 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D A3L08_01685 hypothetical protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D A3L08_02155 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D A3L08_02620 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D A3L08_02665 peptide transporter K02034 ABC.PE.P1; peptide/nickel transport system permease protein D A3L08_06950 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D A3L08_00285 dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D A3L08_02670 dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D A3L08_06945 dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D A3L08_02675 oligopeptide ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D A3L08_07990 hypothetical protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D A3L08_07985 iron ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein D A3L08_07980 iron ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D A3L08_06615 vitamin B12 transporter K25034 btuF; cobalamin transport system substrate-binding protein D A3L08_01000 iron ABC transporter K25027 btuC; cobalamin transport system permease protein D A3L08_01005 iron ABC transporter permease K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8] D A3L08_05160 cobalt transporter K02009 cbiN; cobalt/nickel transport protein D A3L08_05165 cobalt ABC transporter permease K02008 cbiQ; cobalt/nickel transport system permease protein D A3L08_05155 cobalamin biosynthesis protein K02007 cbiM; cobalt/nickel transport system permease protein D A3L08_05170 cobalt ABC transporter ATP-binding protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein D A3L08_08920 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component D A3L08_08935 cobalt ABC transporter permease K16785 ecfT; energy-coupling factor transport system permease protein D A3L08_05520 energy-coupling factor ABC transporter ATP-binding protein K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D A3L08_08930 ABC transporter ATP-binding protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D A3L08_06845 ABC transporter substrate-binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein D A3L08_07310 ABC transporter K02075 ABC.ZM.P; zinc/manganese transport system permease protein D A3L08_07315 ABC transporter K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein D A3L08_07755 permease K16905 K16905; fluoroquinolone transport system permease protein D A3L08_07750 hypothetical protein K16906 K16906; fluoroquinolone transport system permease protein D A3L08_07745 ATP-binding protein K16907 K16907; fluoroquinolone transport system ATP-binding protein [EC:7.6.2.-] D A3L08_00250 ABC transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D A3L08_01370 ABC transporter ATP-binding protein K01992 ABC-2.P; ABC-2 type transport system permease protein D A3L08_01375 multidrug ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D A3L08_02480 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D A3L08_05645 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D A3L08_07555 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D A3L08_08365 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D A3L08_09015 ABC transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D A3L08_09520 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D A3L08_00125 3-dehydroquinate dehydratase K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D A3L08_00245 multidrug ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D A3L08_01365 daunorubicin ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D A3L08_02485 ABC transporter K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D A3L08_05650 ABC transporter K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D A3L08_07565 ABC transporter K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D A3L08_08355 ABC transporter K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D A3L08_09020 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D A3L08_09525 ABC transporter K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D A3L08_06445 ABC transporter ATP-binding protein K09013 sufC; Fe-S cluster assembly ATP-binding protein D A3L08_07190 MATE family efflux transporter K26939 norM; MATE family, multidrug efflux pump D A3L08_05420 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump D A3L08_05425 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump D A3L08_08160 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump D A3L08_02030 calcium-gated potassium channel protein K10716 kch; voltage-gated potassium channel D A3L08_08320 mechanosensitive ion channel protein MscS K03442 mscS; small conductance mechanosensitive channel D A3L08_08070 magnesium transporter MgtE K07244 K07244; mgtE-like transporter D A3L08_07770 magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter D A3L08_07825 camphor resistance protein CrcB K06199 crcB; fluoride exporter D A3L08_01550 effector of murein hydrolase LrgA K06518 cidA; holin-like protein D A3L08_04920 transporter K16211 malY; maltose/moltooligosaccharide transporter D A3L08_05220 cobalt transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein D A3L08_00260 Gufa protein K07238 TC.ZIP; zinc transporter, ZIP family D A3L08_01060 hypothetical protein K08978 TC.BAT1; bacterial/archaeal transporter family protein D A3L08_06625 permease K03298 TC.DME; drug/metabolite transporter, DME family D A3L08_05885 sodium:calcium antiporter K07301 yrbG; cation:H+ antiporter D A3L08_00455 sodium:proline symporter K11928 putP; sodium/proline symporter D A3L08_02380 sodium:proton antiporter K26730 napA; Na+:H+ antiporter D A3L08_02430 sodium:proton antiporter K26730 napA; Na+:H+ antiporter D A3L08_02435 sodium:proton antiporter K26730 napA; Na+:H+ antiporter D A3L08_05805 potassium transporter K26730 napA; Na+:H+ antiporter D A3L08_05515 potassium transporter K03498 trkH; trk/ktr system potassium uptake protein D A3L08_02565 potassium transporter TrkA K03499 trkA; trk/ktr system potassium uptake protein D A3L08_03655 guanine permease K06901 pbuG; adenine/guanine/hypoxanthine permease D A3L08_05795 voltage-gated chloride channel K03281 clcA; chloride channel protein, CIC family D A3L08_08440 anion transporter K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D A3L08_05235 hypothetical protein K03325 ACR3; arsenite transporter D A3L08_05250 arsenical-resistance protein K03325 ACR3; arsenite transporter D A3L08_00390 cation:proton antiporter K05566 mnhB; multicomponent Na+:H+ antiporter subunit B D A3L08_01760 cation:proton antiporter K05566 mnhB; multicomponent Na+:H+ antiporter subunit B D A3L08_06210 cation:proton antiporter K05566 mnhB; multicomponent Na+:H+ antiporter subunit B D A3L08_00395 cation:proton antiporter K05567 mnhC; multicomponent Na+:H+ antiporter subunit C D A3L08_01765 cation:proton antiporter K05567 mnhC; multicomponent Na+:H+ antiporter subunit C D A3L08_06205 cation:proton antiporter K05567 mnhC; multicomponent Na+:H+ antiporter subunit C D A3L08_06565 Na+/H+ antiporter subunit C K05567 mnhC; multicomponent Na+:H+ antiporter subunit C D A3L08_00400 cation:proton antiporter K05568 mnhD; multicomponent Na+:H+ antiporter subunit D D A3L08_01770 cation:proton antiporter K05568 mnhD; multicomponent Na+:H+ antiporter subunit D D A3L08_06575 cation:proton antiporter K05568 mnhD; multicomponent Na+:H+ antiporter subunit D D A3L08_00365 cation:proton antiporter K05569 mnhE; multicomponent Na+:H+ antiporter subunit E D A3L08_01735 cation:proton antiporter K05569 mnhE; multicomponent Na+:H+ antiporter subunit E D A3L08_06230 cation:proton antiporter K05569 mnhE; multicomponent Na+:H+ antiporter subunit E D A3L08_06570 cation:proton antiporter K05569 mnhE; multicomponent Na+:H+ antiporter subunit E D A3L08_00370 cation:proton antiporter K05570 mnhF; multicomponent Na+:H+ antiporter subunit F D A3L08_01740 cation:proton antiporter K05570 mnhF; multicomponent Na+:H+ antiporter subunit F D A3L08_06225 cation:proton antiporter K05570 mnhF; multicomponent Na+:H+ antiporter subunit F D A3L08_06545 pH regulation protein F K05570 mnhF; multicomponent Na+:H+ antiporter subunit F D A3L08_00375 cation:proton antiporter K05571 mnhG; multicomponent Na+:H+ antiporter subunit G D A3L08_01745 cation:proton antiporter K05571 mnhG; multicomponent Na+:H+ antiporter subunit G D A3L08_06220 Na+/H+ antiporter subunit G K05571 mnhG; multicomponent Na+:H+ antiporter subunit G D A3L08_06550 cation:proton antiporter K05571 mnhG; multicomponent Na+:H+ antiporter subunit G D A3L08_07095 transporter K24180 mleP; malate permease and related proteins D A3L08_01280 hypothetical protein K07793 tctA; putative tricarboxylic transport membrane protein D A3L08_07195 rubrerythrin family protein K22736 VIT; vacuolar iron transporter family protein D A3L08_02440 hypothetical protein K05595 marC; multiple antibiotic resistance protein D A3L08_08430 carbon starvation protein CstA K06200 cstA; carbon starvation protein D A3L08_03900 glutaconyl-CoA decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D A3L08_03915 methylmalonyl-CoA carboxyltransferase K01604 mmdA; methylmalonyl-CoA decarboxylase subunit alpha [EC:7.2.4.3] D A3L08_03905 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma D A3L08_03910 methylmalonyl-CoA epimerase K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta D A3L08_07240 Fe2+ transport protein K04758 feoA; ferrous iron transport protein A D A3L08_07245 ferrous iron transporter B K04759 feoB; ferrous iron transport protein B C 02044 Secretion system [BR:tpaf02044] D A3L08_02180 type II secretion protein K07332 flaI; archaeal flagellar protein FlaI D A3L08_02185 type II secretion protein F K07333 flaJ; archaeal flagellar protein FlaJ D A3L08_02190 type II secretion protein F K07333 flaJ; archaeal flagellar protein FlaJ D A3L08_09735 transposase K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52] D A3L08_00810 dCMP deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12] D A3L08_02560 preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D A3L08_02555 preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D A3L08_03585 hypothetical protein K22228 secG; preprotein translocase subunit SecG D A3L08_04165 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D A3L08_04335 signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D A3L08_06815 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D A3L08_04805 secE; preprotein translocase subunit SecE K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins D A3L08_00310 signal recognition particle K03105 SRP19; signal recognition particle subunit SRP19 C 02042 Bacterial toxins C 02022 Two-component system C 02035 Bacterial motility proteins [BR:tpaf02035] D A3L08_02180 type II secretion protein K07332 flaI; archaeal flagellar protein FlaI D A3L08_02185 type II secretion protein F K07333 flaJ; archaeal flagellar protein FlaJ D A3L08_02190 type II secretion protein F K07333 flaJ; archaeal flagellar protein FlaJ D A3L08_09735 transposase K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52] C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:tpaf04812] D A3L08_04380 hypothetical protein K06990 MEMO1; MEMO1 family protein D A3L08_00175 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D A3L08_04800 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D A3L08_03340 cell division protein FtsZ K22222 cetZ; tubulin-like protein CetZ D A3L08_01495 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D A3L08_07845 ATPase K03609 minD; septum site-determining protein MinD D A3L08_09170 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D A3L08_09365 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D A3L08_00170 hypothetical protein K03496 parA; chromosome partitioning protein C 04147 Exosome [BR:tpaf04147] D A3L08_01875 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D A3L08_04270 hypothetical protein K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D A3L08_09010 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D A3L08_07805 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D A3L08_01655 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D A3L08_07965 peroxiredoxin K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D A3L08_07380 tuf; elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha D A3L08_07375 fusA; elongation factor EF-2 K03234 EEF2; elongation factor 2 D A3L08_09450 flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D A3L08_03190 IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D A3L08_03360 30S ribosomal protein S27 K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae D A3L08_09425 AAA family ATPase K13525 VCP; transitional endoplasmic reticulum ATPase D A3L08_09540 AAA family ATPase K13525 VCP; transitional endoplasmic reticulum ATPase D A3L08_00525 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D A3L08_09770 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D A3L08_04170 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D A3L08_04530 hypothetical protein K00939 adk; adenylate kinase [EC:2.7.4.3] D A3L08_07270 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D A3L08_08155 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D A3L08_04945 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D A3L08_02695 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D A3L08_01245 3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D A3L08_04525 glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D A3L08_01995 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 02048 Prokaryotic defense system [BR:tpaf02048] D A3L08_07415 CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D A3L08_00830 CRISPR-associated endoribonuclease Cas6 K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-] D A3L08_04675 CRISPR-associated endoribonuclease Cas6 K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-] D A3L08_08045 hypothetical protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D A3L08_08040 hypothetical protein K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D A3L08_07050 hypothetical protein K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-] D A3L08_07355 restriction endonuclease K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-] D A3L08_08050 hypothetical protein K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-] D A3L08_08660 hypothetical protein K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-] D A3L08_07360 restriction endonuclease K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC D A3L08_08055 hypothetical protein K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC D A3L08_08665 hypothetical protein K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC D A3L08_00175 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D A3L08_04800 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D A3L08_04870 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D A3L08_09125 hypothetical protein K07060 nob1; endoribonuclease Nob1 [EC:3.1.-.-] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:tpaf00537] D A3L08_01655 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:tpaf03100] D A3L08_00920 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D A3L08_01225 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D A3L08_04565 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D A3L08_00795 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D A3L08_04305 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D A3L08_04360 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D A3L08_04835 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D A3L08_08855 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D A3L08_05020 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D A3L08_03640 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D A3L08_05090 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D A3L08_02000 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D A3L08_03425 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D A3L08_03130 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D A3L08_07675 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D A3L08_00710 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D A3L08_01420 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D A3L08_04365 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D A3L08_01625 tRNA-His K14226 tRNA-His; tRNA His D A3L08_03135 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D A3L08_00210 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D A3L08_04235 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D A3L08_04280 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D A3L08_05435 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D A3L08_09225 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D A3L08_03645 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D A3L08_09220 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D A3L08_05025 tRNA-Met K14230 tRNA-Met; tRNA Met D A3L08_06370 tRNA-Met K14230 tRNA-Met; tRNA Met D A3L08_09080 tRNA-Met K14230 tRNA-Met; tRNA Met D A3L08_00705 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D A3L08_03435 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D A3L08_04260 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D A3L08_04760 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D A3L08_04210 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D A3L08_05095 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D A3L08_05505 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D A3L08_07390 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D A3L08_04765 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D A3L08_05015 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D A3L08_07505 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D A3L08_01475 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D A3L08_01565 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D A3L08_00785 tRNA-Val K14237 tRNA-Val; tRNA Val D A3L08_04560 tRNA-Val K14237 tRNA-Val; tRNA Val D A3L08_07045 tRNA-Val K14237 tRNA-Val; tRNA Val D A3L08_00925 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D A3L08_00915 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D A3L08_03635 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D A3L08_09750 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D A3L08_02715 rnpB; RNase P RNA component K01978 rnpB; RNase P catalytic RNA component D A3L08_00690 ffs; signal recognition particle sRNA K01983 ffs; signal recognition particle 4.5S RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D A3L08_00465 indolepyruvate ferredoxin oxidoreductase subunit alpha K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8] D A3L08_03815 indolepyruvate ferredoxin oxidoreductase subunit alpha K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8] D A3L08_00470 indolepyruvate ferredoxin oxidoreductase subunit beta K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8] D A3L08_00880 indolepyruvate oxidoreductase subunit B K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8] D A3L08_00660 NADH oxidase K17870 nox1; NADH oxidase (H2O2-forming) [EC:1.6.3.3] D A3L08_07810 peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D A3L08_01790 NADH dehydrogenase K18016 mbhL; membrane-bound hydrogenase subunit alpha [EC:1.12.7.2] D A3L08_01785 hydrogenase K18017 mbhK; membrane-bound hydrogenase subunit beta [EC:1.12.7.2] D A3L08_01780 hydrogenase K18023 mbhJ; membrane-bound hydrogenase subunit mbhJ [EC:1.12.7.2] D A3L08_08250 superoxide reductase K05919 dfx; superoxide reductase [EC:1.15.1.2] D A3L08_08125 ferritin K02217 ftnA; ferritin [EC:1.16.3.2] D A3L08_00330 ferredoxin-NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D A3L08_00765 ferredoxin-NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D A3L08_05245 arsenate reductase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D A3L08_01535 radical SAM protein K06937 E1.21.98.5; tetraether lipid synthase [EC:1.21.98.5] D A3L08_05765 radical SAM protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D A3L08_02900 aldehyde ferredoxin oxidoreductase K27878 wor5; aliphatic sulfonate oxidoreductase catalytic subunit [EC:1.97.1.13] D A3L08_06515 formate hydrogenlyase K12137 hyfB; hydrogenase-4 component B [EC:1.-.-.-] D A3L08_06520 hydrogenase K12138 hyfC; hydrogenase-4 component C [EC:1.-.-.-] D A3L08_06510 hydantoin racemase K12139 hyfD; hydrogenase-4 component D [EC:1.-.-.-] D A3L08_09745 protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D A3L08_00780 diphthine synthase K20215 dph5; diphthine synthase [EC:2.1.1.98] D A3L08_06690 carbamoyl transferase K00612 nodU; carbamoyltransferase [EC:2.1.3.-] D A3L08_07610 deoxyhypusine synthase K00809 DHPS; deoxyhypusine synthase [EC:2.5.1.46] D A3L08_00720 hypothetical protein K07057 bpsA; N4-bis(aminopropyl)spermidine synthase [EC:2.5.1.128] D A3L08_01440 RNA-binding protein K07557 tgtA2; archaeosine synthase alpha-subunit [EC:2.6.1.97 2.6.1.-] D A3L08_06790 radical SAM protein K06936 raSEA; archaeosine synthase beta-subunit [EC:2.6.1.-] D A3L08_00900 hypothetical protein K18678 VTE5; phytol kinase [EC:2.7.1.182] D A3L08_07435 2-phosphoglycerate kinase K05715 2PGK; 2-phosphoglycerate kinase [EC:2.7.2.16] D A3L08_07800 hypothetical protein K18672 dacA; diadenylate cyclase [EC:2.7.7.85] D A3L08_09710 hypothetical protein K17884 E2.7.8.39; archaetidylinositol phosphate synthase [EC:2.7.8.39] D A3L08_07055 hypothetical protein K09116 K09116; damage-control phosphatase, subfamily I [EC:3.1.3.-] D A3L08_08730 deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D A3L08_02040 hypothetical protein K07503 nucS; endonuclease [EC:3.1.-.-] D A3L08_05770 polysaccharide deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D A3L08_06430 deaminase K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D A3L08_02215 magnesium chelatase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D A3L08_02990 magnesium chelatase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D A3L08_09695 hydroxide adenosyltransferase K22205 E3.13.2.3; S-adenosyl-L-methionine hydrolase (adenosine-forming) [EC:3.13.2.3] D A3L08_02090 bifunctional ADP-dependent (S)-NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D A3L08_05640 N-glycosylase K01741 E4.2.99.18; DNA-(apurinic or apyrimidinic site) lyase [EC:4.2.99.18] D A3L08_03950 RNA 3'-terminal-phosphate cyclase K18105 rtcA; RNA 3'-terminal phosphate cyclase (GTP) [EC:6.5.1.5] D A3L08_07430 2,3-diphosphoglycerate synthetase K05716 CPGS; cyclic 2,3-diphosphoglycerate synthase [EC:6.5.1.9] D A3L08_04035 ATP-dependent DNA ligase K07468 K07468; DNA/RNA ligase [EC:6.5.1.-] C 99981 Carbohydrate metabolism D A3L08_09250 sugar fermentation stimulation protein SfsA K06206 sfsA; sugar fermentation stimulation protein A C 99982 Energy metabolism D A3L08_00735 ferredoxin K05337 fer; ferredoxin D A3L08_06525 hycE; hydrogenase 3 large subunit K15830 hycE; formate hydrogenlyase subunit 5 D A3L08_02895 oxidoreductase K27879 wor5-S; aliphatic sulfonate oxidoreductase iron-sulfur subunit C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism C 99986 Glycan metabolism D A3L08_01960 hypothetical protein K07027 K07027; glycosyltransferase 2 family protein D A3L08_05780 hypothetical protein K07027 K07027; glycosyltransferase 2 family protein C 99987 Cofactor metabolism D A3L08_09550 molybdopterin-guanine dinucleotide biosynthesis protein MobB K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein C 99988 Secondary metabolism D A3L08_00520 transcriptional regulator K07068 DUF35; scaffold protein (connect acetoacetyl-CoA thiolase and HMG-CoA synthase) C 99999 Others B B 09192 Unclassified: genetic information processing C 99973 Transcription D A3L08_00505 transcriptional regulator K03627 MBF1; putative transcription factor D A3L08_07180 small nuclear ribonucleoprotein K04796 RUXX; small nuclear ribonucleoprotein D A3L08_05710 transcriptional regulator K07743 K07743; transcriptional regulator D A3L08_02545 hypothetical protein K07745 K07745; transcriptional regulator C 99974 Translation D A3L08_05730 hypothetical protein K07572 K07572; putative nucleotide binding protein D A3L08_09530 mRNA 3'-end processing factor K07577 K07577; putative mRNA 3-end processing factor D A3L08_03525 DNA methylase K07579 K07579; putative methylase D A3L08_03150 RNA-binding protein K07580 K07580; Zn-ribbon RNA-binding protein D A3L08_04460 hypothetical protein K07581 K07581; RNA-binding protein D A3L08_09485 hypothetical protein K07585 K07585; tRNA methyltransferase C 99975 Protein processing D A3L08_05340 hydrogenase K04653 hypC; hydrogenase expression/formation protein HypC D A3L08_05345 hydrogenase formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD D A3L08_05355 hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE D A3L08_07225 hydrogenase assembly protein HupF K04655 hypE; hydrogenase expression/formation protein HypE D A3L08_07460 hydrogenase K04655 hypE; hydrogenase expression/formation protein HypE D A3L08_05350 carbamoyltransferase HypF K04656 hypF; hydrogenase maturation protein HypF D A3L08_00570 osmotically inducible protein OsmC K07397 yhfA; putative redox protein D A3L08_09160 nodulation protein NfeD K07403 nfeD; membrane-bound serine protease (ClpP class) C 99976 Replication and repair D A3L08_03755 multidrug transporter K07463 K07463; archaea-specific RecJ-like exonuclease D A3L08_06070 TATA box-binding protein K07472 TIP49; TBP-interacting protein D A3L08_06660 haloacid dehalogenase K07477 K07477; translin C 99979 Viral proteins C 99998 Others D A3L08_07455 restriction endonuclease K07504 K07504; predicted type IV restriction endonuclease B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D A3L08_01300 Na-dependent transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family D A3L08_01710 phosphate permease K03306 TC.PIT; inorganic phosphate transporter, PiT family D A3L08_07035 sodium:phosphate symporter K03306 TC.PIT; inorganic phosphate transporter, PiT family D A3L08_00630 sodium:proline symporter K03307 TC.SSS; solute:Na+ symporter, SSS family D A3L08_06920 sodium transporter K03307 TC.SSS; solute:Na+ symporter, SSS family D A3L08_02455 alanine glycine permease K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family C 99978 Cell growth D A3L08_09115 allophanate hydrolase K06351 kipI; inhibitor of KinA D A3L08_06275 hypothetical protein K06384 spoIIM; stage II sporulation protein M D A3L08_06640 hypothetical protein K28350 cdpB; cell division protein B D A3L08_09430 photosystem reaction center subunit H K28350 cdpB; cell division protein B D A3L08_03870 hypothetical protein K09152 sepF; cell division protein SepF C 99993 Cell motility C 99995 Signaling proteins D A3L08_01675 serine/threonine protein kinase K07176 K07176; putative serine/threonine protein kinase D A3L08_03520 ATPase K08482 kaiC; circadian clock protein KaiC D A3L08_04410 circadian clock KaiC-like protein K08482 kaiC; circadian clock protein KaiC D A3L08_09465 hypothetical protein K06875 PDCD5; programmed cell death protein 5 C 99992 Structural proteins C 99994 Others D A3L08_01395 cation tolerance protein CutA K03926 cutA; periplasmic divalent cation tolerance protein B B 09194 Poorly characterized C 99996 General function prediction only D A3L08_09030 hypothetical protein K04477 ycdX; putative hydrolase D A3L08_09360 ATPase K06865 K06865; ATPase D A3L08_07485 hypothetical protein K06877 K06877; DEAD/DEAH box helicase domain-containing protein D A3L08_09605 methionine--tRNA ligase subunit beta K06878 K06878; tRNA-binding protein D A3L08_02390 hydrolase K07025 K07025; putative hydrolase of the HAD superfamily D A3L08_03735 2-haloalkanoic acid dehalogenase K07025 K07025; putative hydrolase of the HAD superfamily D A3L08_04615 2-haloalkanoic acid dehalogenase K07025 K07025; putative hydrolase of the HAD superfamily D A3L08_07900 haloacid dehalogenase K07025 K07025; putative hydrolase of the HAD superfamily D A3L08_09715 2-haloalkanoic acid dehalogenase K07025 K07025; putative hydrolase of the HAD superfamily D A3L08_06450 Fe-S cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB D A3L08_01830 hydrolase K07038 K07038; inner membrane protein D A3L08_03965 metal-dependent hydrolase K07049 K07049; TatD-related deoxyribonuclease D A3L08_04635 hypothetical protein K07143 K07143; UPF0148 protein D A3L08_02745 hypothetical protein K08971 K08971; putative membrane protein D A3L08_03690 hypothetical protein K08975 K08975; putative membrane protein D A3L08_08030 hypothetical protein K08982 K08982; putative membrane protein C 99997 Function unknown D A3L08_02050 proteasome assembly chaperone family protein K06869 K06869; uncharacterized protein D A3L08_01215 ATP-dependent protease K06870 K06870; uncharacterized protein D A3L08_07370 phosphohydrolase K06885 K06885; uncharacterized protein D A3L08_07640 nucleotidyltransferase K06885 K06885; uncharacterized protein D A3L08_08035 ATPase K06921 K06921; uncharacterized protein D A3L08_00030 CoA-binding protein K06929 K06929; uncharacterized protein D A3L08_08560 hypothetical protein K06933 K06933; uncharacterized protein D A3L08_08545 DNA-binding protein K06934 K06934; uncharacterized protein D A3L08_06240 molybdenum cofactor biosynthesis protein MoaA K06935 K06935; uncharacterized protein D A3L08_02525 hypothetical protein K06940 K06940; uncharacterized protein D A3L08_04325 Fe-S-cluster oxidoreductase K06940 K06940; uncharacterized protein D A3L08_04605 phosphohydrolase K06950 K06950; uncharacterized protein D A3L08_03455 exonuclease SbcD K06953 K06953; uncharacterized protein D A3L08_04985 metallophosphoesterase K06953 K06953; uncharacterized protein D A3L08_01150 hypothetical protein K06971 K06971; uncharacterized protein D A3L08_01660 hypothetical protein K06983 K06983; uncharacterized protein D A3L08_04910 hypothetical protein K06986 K06986; uncharacterized protein D A3L08_00745 hypothetical protein K07022 K07022; uncharacterized protein D A3L08_04540 hypothetical protein K07041 K07041; uncharacterized protein D A3L08_03145 PIN domain-containing protein K07063 K07063; uncharacterized protein D A3L08_09405 nucleotidyltransferase K07073 K07073; uncharacterized protein D A3L08_04790 C4-dicarboxylate ABC transporter substrate-binding protein K07080 K07080; uncharacterized protein D A3L08_00120 hypothetical protein K07087 K07087; uncharacterized protein D A3L08_02335 permease K07090 K07090; uncharacterized protein D A3L08_05275 permease K07090 K07090; uncharacterized protein D A3L08_06710 permease K07090 K07090; uncharacterized protein D A3L08_06720 permease K07090 K07090; uncharacterized protein D A3L08_07160 hypothetical protein K07090 K07090; uncharacterized protein D A3L08_00090 3',5'-cyclic-nucleotide phosphodiesterase K07095 K07095; uncharacterized protein D A3L08_03935 phosphodiesterase K07095 K07095; uncharacterized protein D A3L08_06680 metallophosphoesterase K07096 K07096; uncharacterized protein D A3L08_02940 xanthine phosphoribosyltransferase K07101 K07101; uncharacterized protein D A3L08_06860 xanthine phosphoribosyltransferase K07101 K07101; uncharacterized protein D A3L08_01385 regulator of amino acid metabolism, contains ACT domain protein K07103 K07103; uncharacterized protein D A3L08_06235 regulator K07103 K07103; uncharacterized protein D A3L08_04195 oxidoreductase K07124 K07124; uncharacterized protein D A3L08_02845 Fe-S protein, radical SAM family K07129 K07129; uncharacterized protein D A3L08_07720 ATPase K07133 K07133; uncharacterized protein D A3L08_00725 ATPase K07134 K07134; uncharacterized protein D A3L08_05975 tRNA-binding protein K07135 K07135; uncharacterized protein D A3L08_02420 FAD-dependent oxidoreductase K07137 K07137; uncharacterized protein D A3L08_03565 nucleotide-binding protein K07158 K07158; uncharacterized protein D A3L08_05150 proteasome assembly chaperone family protein K07159 K07159; uncharacterized protein D A3L08_07065 hypothetical protein K09003 K09003; uncharacterized protein D A3L08_06750 hypothetical protein K09005 K09005; uncharacterized protein D A3L08_00495 hypothetical protein K09010 K09010; uncharacterized protein D A3L08_09570 hypothetical protein K09122 K09122; uncharacterized protein D A3L08_01905 adenosine monophosphate-protein transferase K09129 K09129; uncharacterized protein D A3L08_00055 TIGR00703 family protein K09130 K09130; uncharacterized protein D A3L08_07150 hypothetical protein K09131 K09131; uncharacterized protein D A3L08_03200 hypothetical protein K09133 K09133; uncharacterized protein D A3L08_02045 hypothetical protein K09135 K09135; uncharacterized protein D A3L08_07830 hypothetical protein K09137 K09137; uncharacterized protein D A3L08_08495 hypothetical protein K09138 K09138; uncharacterized protein D A3L08_00905 hypothetical protein K09139 K09139; uncharacterized protein D A3L08_03700 AMMECR1 domain-containing protein K09141 K09141; uncharacterized protein D A3L08_07155 hypothetical protein K09145 K09145; uncharacterized protein D A3L08_05395 hypothetical protein K09148 K09148; uncharacterized protein D A3L08_03540 hypothetical protein K09149 K09149; uncharacterized protein D A3L08_02260 hypothetical protein K09150 K09150; uncharacterized protein D A3L08_03560 metal-dependent phosphohydrolase K09163 K09163; uncharacterized protein D A3L08_02795 hypothetical protein K09713 K09713; uncharacterized protein D A3L08_08720 hypothetical protein K09715 K09715; uncharacterized protein D A3L08_07820 hypothetical protein K09719 K09719; uncharacterized protein D A3L08_01580 hypothetical protein K09721 K09721; uncharacterized protein D A3L08_07345 hypothetical protein K09724 K09724; uncharacterized protein D A3L08_01645 hypothetical protein K09725 K09725; uncharacterized protein D A3L08_06270 hypothetical protein K09726 K09726; uncharacterized protein D A3L08_00500 hypothetical protein K09727 K09727; uncharacterized protein D A3L08_05440 hypothetical protein K09728 K09728; uncharacterized protein D A3L08_09105 hypothetical protein K09730 K09730; uncharacterized protein D A3L08_05445 hypothetical protein K09731 K09731; uncharacterized protein D A3L08_02105 hypothetical protein K09732 K09732; uncharacterized protein D A3L08_00255 hypothetical protein K09736 K09736; uncharacterized protein D A3L08_02700 hypothetical protein K09737 K09737; uncharacterized protein D A3L08_00060 hypothetical protein K09738 K09738; uncharacterized protein D A3L08_05585 hypothetical protein K09742 K09742; uncharacterized protein D A3L08_03615 replication protein RepA K09746 K09746; uncharacterized protein D A3L08_01250 TIGR00153 family protein K07220 K07220; uncharacterized protein D A3L08_01705 TIGR00153 family protein K07220 K07220; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: October 6, 2025