+F Repair protein KO #

  DNA Repair and Recombination Proteins - Treponema pedis

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D TPE_0743 methylated-DNA--protein-cysteinemethyltransferase 1 K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E TPE_2450 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E TPE_0811 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E TPE_1182 helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D TPE_1103 dut; deoxyuridine 5'triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D TPE_0743 methylated-DNA--protein-cysteinemethyltransferase 1 K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E TPE_2352 DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E TPE_2450 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E TPE_0811 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E TPE_2590 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E TPE_1778 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E TPE_1881 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E TPE_1752 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E TPE_1928 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E TPE_2366 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E TPE_0453 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E TPE_1981 ATP-dependent DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TPE_2339 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TPE_1752 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E TPE_1881 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F TPE_0448 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F TPE_0449 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F TPE_2621 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F TPE_0028 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F TPE_2372 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E TPE_0346 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E TPE_1486 MutS family DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E TPE_1850 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E TPE_0241 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E TPE_1849 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E TPE_0894 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E TPE_0776 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E TPE_0964 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E TPE_2215 DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E TPE_0539 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E TPE_2587 DNA polymerase III K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E TPE_1881 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E TPE_1981 ATP-dependent DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TPE_2339 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TPE_0942 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E TPE_1446 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein E TPE_0648 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E TPE_0408 vsr; DNA mismatch endonuclease Vsr K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E TPE_1118 recA; recombinase A K03553 recA; recombination protein RecA E TPE_0400 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E TPE_1962 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E TPE_0401 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E TPE_2351 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E TPE_1200 nuclease SbcCD, C subunit K03546 sbcC; DNA repair protein SbcC/Rad50 E TPE_1199 nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E TPE_1118 recA; recombinase A K03553 recA; recombination protein RecA E TPE_2334 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E TPE_0777 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E TPE_0834 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E TPE_2667 transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E TPE_1778 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E TPE_2721 recR; recombination protein RecR K06187 recR; recombination protein RecR E TPE_1932 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E TPE_0400 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E TPE_1962 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E TPE_0401 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E TPE_0689 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E TPE_1200 nuclease SbcCD, C subunit K03546 sbcC; DNA repair protein SbcC/Rad50 E TPE_1199 nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 E TPE_1509 putative ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F TPE_0265 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F TPE_2808 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F TPE_2114 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F TPE_1778 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F TPE_2721 recR; recombination protein RecR K06187 recR; recombination protein RecR F TPE_1881 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F TPE_0387 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F TPE_2806 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F TPE_1928 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F TPE_2366 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D TPE_0910 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D TPE_1118 recA; recombinase A K03553 recA; recombination protein RecA D TPE_1932 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D TPE_0942 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D TPE_1446 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D TPE_0271 recX; recombination regulator RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D TPE_1690 ATP-dependent helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D TPE_1103 dut; deoxyuridine 5'triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D TPE_0488 nrdA; ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TPE_0578 nrdF; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D TPE_2315 DHH super, subfamily 1 K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024