+D GENES KO #

  KEGG Orthology (KO) - Treponema pallidum subsp. pallidum Chicago

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A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:tph00010] D TPChic_0505 hexokinase K00844 HK; hexokinase [EC:2.7.1.1] D TPChic_0475 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D TPChic_0108 6-phosphofructokinase 3 (Phosphofructokinase 3)(Phosphohexokinase 3) K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D TPChic_0542 diphosphate--fructose-6-phosphate 1-phosphotransferase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90] D TPChic_0662 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D TPChic_0537 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D TPChic_0844 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D TPChic_0538 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D TPChic_0168 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (phosphoglyceromutase) (pgam) (bpg-dependent pgam) (dpgm) K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D TPChic_0817 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D TPChic_0746 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D TPChic_0939 nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D TPChic_0642 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D TPChic_0122 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] C 00020 Citrate cycle (TCA cycle) [PATH:tph00020] D TPChic_0122 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D TPChic_0939 nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] C 00030 Pentose phosphate pathway [PATH:tph00030] D TPChic_0475 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D TPChic_0478 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D TPChic_0331 gnd; 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D TPChic_0945 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D TPChic_0560 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D TPChic_0616 rpiA; ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D TPChic_0264 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D TPChic_0642 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D TPChic_0294 phosphoribosylpyrophosphate synthetase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D TPChic_0568 khg/kdpg aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D TPChic_0662 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D TPChic_0108 6-phosphofructokinase 3 (Phosphofructokinase 3)(Phosphohexokinase 3) K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D TPChic_0542 diphosphate--fructose-6-phosphate 1-phosphotransferase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90] C 00040 Pentose and glucuronate interconversions D TPChic_0945 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] C 00051 Fructose and mannose metabolism [PATH:tph00051] D TPChic_0505 hexokinase K00844 HK; hexokinase [EC:2.7.1.1] D TPChic_0108 6-phosphofructokinase 3 (Phosphofructokinase 3)(Phosphohexokinase 3) K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D TPChic_0542 diphosphate--fructose-6-phosphate 1-phosphotransferase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90] D TPChic_0662 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D TPChic_0537 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 00052 Galactose metabolism [PATH:tph00052] D TPChic_0418 putative galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D TPChic_0642 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D TPChic_0505 hexokinase K00844 HK; hexokinase [EC:2.7.1.1] D TPChic_0108 6-phosphofructokinase 3 (Phosphofructokinase 3)(Phosphohexokinase 3) K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C 00053 Ascorbate and aldarate metabolism C 00500 Starch and sucrose metabolism [PATH:tph00500] D TPChic_0358 glycosyl hydrolase, family 57 K16149 K16149; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D TPChic_0642 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D TPChic_0505 hexokinase K00844 HK; hexokinase [EC:2.7.1.1] D TPChic_0475 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:tph00520] D TPChic_0505 hexokinase K00844 HK; hexokinase [EC:2.7.1.1] D TPChic_0861 glmS; glutamine-fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D TPChic_0029 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D TPChic_0090 UDP-N-acetylenolpyruvoylglucosamine reductase (UDP-N-acetylmuramate dehydrogenase) K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D TPChic_0642 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D TPChic_0418 putative galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D TPChic_0475 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] C 00620 Pyruvate metabolism [PATH:tph00620] D TPChic_0939 nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D TPChic_0476 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D TPChic_0094 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D TPChic_0037 D-lactate dehydrogenase (D-LDH) (D-specific D-2-hydroxyacid dehydrogenase) K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28] D TPChic_0056 oadA; oxaloacetate decarboxylase alpha subunit K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D TPChic_0057 oxaloacetate decarboxylase, subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D TPChic_0055 sodium pump decarboxylase, gamma subunit subfamily K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma D TPChic_0122 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D TPChic_0746 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:tph00630] D TPChic_0554 phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D TPChic_0568 khg/kdpg aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] C 00640 Propanoate metabolism [PATH:tph00640] D TPChic_0476 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D TPChic_0094 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] C 00650 Butanoate metabolism [PATH:tph00650] D TPChic_0057 oxaloacetate decarboxylase, subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D TPChic_0939 nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] C 00660 C5-Branched dibasic acid metabolism C 00562 Inositol phosphate metabolism D TPChic_0537 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:tph00190] D TPChic_0426 V-type ATP synthase alpha chain 1 K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1] D TPChic_0529 V-type ATP synthase alpha chain 2 K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1] D TPChic_0427 ntpB; V-type sodium ATPase, B subunit K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B D TPChic_0528 V-type ATP synthase beta chain 2 K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B D TPChic_0428 V-type ATPase, D subunit K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D D TPChic_0527 V-type ATPase, D subunit K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D D TPChic_0530 V-type ATPase, subunit E, putative K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E D TPChic_0429 V-type ATP synthase subunit I 1 K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I D TPChic_0430 V-type ATP synthase subunit K K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation by Calvin cycle [PATH:tph00710] D TPChic_0538 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D TPChic_0844 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D TPChic_0662 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D TPChic_0560 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D TPChic_0616 rpiA; ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D TPChic_0537 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D TPChic_0945 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D TPChic_0746 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] C 00720 Other carbon fixation pathways [PATH:tph00720] D TPChic_0939 nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D TPChic_0746 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D TPChic_0732 bifunctional protein FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D TPChic_0094 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D TPChic_0476 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00680 Methane metabolism [PATH:tph00680] D TPChic_0817 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D TPChic_0662 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D TPChic_0108 6-phosphofructokinase 3 (Phosphofructokinase 3)(Phosphohexokinase 3) K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D TPChic_0476 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D TPChic_0094 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D TPChic_0168 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (phosphoglyceromutase) (pgam) (bpg-dependent pgam) (dpgm) K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] C 00910 Nitrogen metabolism D TPChic_0735 gltA; glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] C 00920 Sulfur metabolism D TPChic_0436 DHH superfamily protein, subfamily 1 K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:tph00061] D TPChic_0808 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D TPChic_0145 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation D TPChic_0145 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism D TPChic_0361 acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 00564 Glycerophospholipid metabolism [PATH:tph00564] D TPChic_1009 glycerol-3-phosphate dehydrogenase [NAD(P)+] K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D TPChic_0361 acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D TPChic_0257 glpQ; glycerophosphoryl diester phosphodiesterase GlpQ K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D TPChic_0602 cdsA; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D TPChic_0256 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D TPChic_0730 CDP-alcohol phosphatidyltransferase superfamily K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:tph00230] D TPChic_0642 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D TPChic_0294 phosphoribosylpyrophosphate synthetase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D TPChic_1039 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D TPChic_0104 nadN; NAD nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D TPChic_0419 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D TPChic_0734 deoD; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D TPChic_1010 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D TPChic_0438 rdgB; non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D TPChic_0079 putative aldehyde oxidase and xanthine dehydrogenase family protein K13482 xdhB; xanthine dehydrogenase large subunit [EC:1.17.1.4] D TPChic_1008 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TPChic_0053 ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D TPChic_0485 adenylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D TPChic_0595 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00240 Pyrimidine metabolism [PATH:tph00240] D TPChic_0099 uridylate kinase, putative K09903 pyrH; uridylate kinase [EC:2.7.4.22] D TPChic_1010 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D TPChic_0305 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D TPChic_0342 cytidylate kinase, putative K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D TPChic_0104 nadN; NAD nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D TPChic_0419 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D TPChic_1027 udp; uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3] D TPChic_0448 putative uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D TPChic_1008 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TPChic_0053 ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D TPChic_0274 dCMP deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12] D TPChic_0354 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D TPChic_0885 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D TPChic_1007 thymidylate synthase ThyX K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:tph00250] D TPChic_0223 putative aspartate aminotransferase TpAAT K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D TPChic_0556 asnA; aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] D TPChic_0735 gltA; glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D TPChic_0861 glmS; glutamine-fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] C 00260 Glycine, serine and threonine metabolism D TPChic_0168 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (phosphoglyceromutase) (pgam) (bpg-dependent pgam) (dpgm) K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] C 00270 Cysteine and methionine metabolism [PATH:tph00270] D TPChic_0794 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D TPChic_0223 putative aspartate aminotransferase TpAAT K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00280 Valine, leucine and isoleucine degradation C 00290 Valine, leucine and isoleucine biosynthesis C 00300 Lysine biosynthesis [PATH:tph00300] D TPChic_0933 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D TPChic_0386 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation D TPChic_0121 putative radical SAM domain protein K01843 kamA; lysine 2,3-aminomutase [EC:5.4.3.2] C 00220 Arginine biosynthesis D TPChic_0223 putative aspartate aminotransferase TpAAT K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00330 Arginine and proline metabolism [PATH:tph00330] D TPChic_0351 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D TPChic_0350 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D TPChic_0223 putative aspartate aminotransferase TpAAT K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism C 00350 Tyrosine metabolism D TPChic_0223 putative aspartate aminotransferase TpAAT K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00360 Phenylalanine metabolism D TPChic_0223 putative aspartate aminotransferase TpAAT K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00380 Tryptophan metabolism C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:tph00400] D TPChic_0223 putative aspartate aminotransferase TpAAT K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism C 00430 Taurine and hypotaurine metabolism [PATH:tph00430] D TPChic_0094 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D TPChic_0476 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism C 00450 Selenocompound metabolism [PATH:tph00450] D TPChic_0614 cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D TPChic_0814 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D TPChic_0798 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism D TPChic_0556 asnA; aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] C 00470 D-Amino acid metabolism [PATH:tph00470] D TPChic_0681 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D TPChic_0670 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D TPChic_0406 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D TPChic_0903 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] C 00480 Glutathione metabolism [PATH:tph00480] D TPChic_0331 gnd; 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D TPChic_0478 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis C 00550 Peptidoglycan biosynthesis [PATH:tph00550] D TPChic_0029 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D TPChic_0090 UDP-N-acetylenolpyruvoylglucosamine reductase (UDP-N-acetylmuramate dehydrogenase) K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D TPChic_0341 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D TPChic_0903 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D TPChic_0933 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D TPChic_0670 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D TPChic_0386 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D TPChic_0603 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D TPChic_0345 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D TPChic_0523 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D TPChic_0705 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D TPChic_0500 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D TPChic_0760 penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D TPChic_0800 serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] C 00552 Teichoic acid biosynthesis [PATH:tph00552] D TPChic_0275 glycosyl transferase, WecB/TagA/CpsF family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:tph00543] D TPChic_0566 alginate O-acetylation protein K19294 algI; alginate O-acetyltransferase complex protein AlgI B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:tph00730] D TPChic_0863 nitrogen fixation protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D TPChic_0559 thiI; thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D TPChic_0824 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D TPChic_0518 thiamine pyrophosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2] D TPChic_0595 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:tph00740] D TPChic_0888 riboflavin kinase/FMN adenylyltransferase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] C 00750 Vitamin B6 metabolism [PATH:tph00750] D TPChic_0115 thiD; phosphomethylpyrimidine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35] C 00760 Nicotinate and nicotinamide metabolism [PATH:tph00760] D TPChic_0628 putative nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D TPChic_0734 deoD; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D TPChic_0104 nadN; NAD nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D TPChic_0419 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D TPChic_0741 nadD; nicotinate (nicotinamide) nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D TPChic_0780 probable glutamine-dependent NAD(+) synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] D TPChic_0441 probable inorganic polyphosphate/ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] C 00770 Pantothenate and CoA biosynthesis [PATH:tph00770] D TPChic_0431 type III pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D TPChic_0283 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D TPChic_0296 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D TPChic_0828 acpS; holo-[acyl-carrier-protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] C 00780 Biotin metabolism [PATH:tph00780] D TPChic_0357 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism C 00790 Folate biosynthesis [PATH:tph00790] D TPChic_0340 folylpolyglutamate synthetase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] C 00670 One carbon pool by folate [PATH:tph00670] D TPChic_0732 bifunctional protein FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D TPChic_0756 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D TPChic_1007 thymidylate synthase ThyX K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D TPChic_0694 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism D TPChic_0673 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:tph00900] D TPChic_0824 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D TPChic_0601 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D TPChic_0512 bifunctional enzyme IspD/ispF K12506 ispDF; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12] D TPChic_0371 ispE; 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D TPChic_0446 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D TPChic_0547 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D TPChic_0683 octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D TPChic_0603 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation [PATH:tph00903] D TPChic_0935 N-acetylphosphinothricin-tripetide-deacetylase, putative K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83] C 00907 Pinene, camphor and geraniol degradation C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D TPChic_0560 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis [PATH:tph00332] D TPChic_0351 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D TPChic_0350 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:tph00521] D TPChic_0505 hexokinase K00844 HK; hexokinase [EC:2.7.1.1] D TPChic_0642 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D TPChic_0505 hexokinase K00844 HK; hexokinase [EC:2.7.1.1] C 00525 Acarbose and validamycin biosynthesis C 00401 Novobiocin biosynthesis D TPChic_0223 putative aspartate aminotransferase TpAAT K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis C 00333 Prodigiosin biosynthesis C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D TPChic_0808 acpP; acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites D TPChic_0794 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation D TPChic_0057 oxaloacetate decarboxylase, subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] C 00627 Aminobenzoate degradation C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation C 00361 Chlorocyclohexane and chlorobenzene degradation C 00623 Toluene degradation C 00622 Xylene degradation C 00633 Nitrotoluene degradation C 00642 Ethylbenzene degradation C 00643 Styrene degradation C 00791 Atrazine degradation C 00930 Caprolactam degradation D TPChic_0935 N-acetylphosphinothricin-tripetide-deacetylase, putative K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83] C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:tph03020] D TPChic_0241 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D TPChic_0242 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D TPChic_0212 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D TPChic_0701 RNA polymerases K / 14 to 18 kDa subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors D TPChic_0380 DNA or RNA helicase of superfamily II K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:tph03010] D TPChic_0279 bifunctional cytidylate kinase/ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D TPChic_0606 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D TPChic_0195 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D TPChic_0306 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D TPChic_0206 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D TPChic_0063 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D TPChic_0244 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D TPChic_0203 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D TPChic_1024 rpsI; ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D TPChic_0188 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D TPChic_0211 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D TPChic_0243 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D TPChic_0210 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D TPChic_0887 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D TPChic_0905 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D TPChic_0198 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D TPChic_0061 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D TPChic_0193 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D TPChic_0758 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D TPChic_0238 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D TPChic_0192 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D TPChic_0189 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D TPChic_0190 rplD; ribosomal protein L4/L1 family K02926 RP-L4; large subunit ribosomal protein L4 D TPChic_0201 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D TPChic_0204 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D TPChic_0240 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D TPChic_0060 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D TPChic_0239 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D TPChic_0237 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D TPChic_1025 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D TPChic_0199 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D TPChic_0207 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D TPChic_0196 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D TPChic_0213 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D TPChic_0205 ribosomal L18p/L5e family K02881 RP-L18; large subunit ribosomal protein L18 D TPChic_0848 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D TPChic_0745 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D TPChic_0194 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D TPChic_0191 rplW; ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D TPChic_0200 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D TPChic_0372 ribosomal protein L25, Ctc-form K02897 RP-L25; large subunit ribosomal protein L25 D TPChic_0743 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D TPChic_0362 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D TPChic_0197 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D TPChic_0206a rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D TPChic_0255 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D TPChic_0807 conserved domain protein K02911 RP-L32; large subunit ribosomal protein L32 D TPChic_0234 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D TPChic_0951 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D TPChic_0849 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D TPChic_r01 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TPChic_r04 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TPChic_r02 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D TPChic_r05 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D TPChic_r06 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D TPChic_r03 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:tph00970] D TPChic_t15 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D TPChic_t41 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D TPChic_t44 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D TPChic_t03 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TPChic_t30 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TPChic_t35 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TPChic_t31 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TPChic_t26 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TPChic_t24 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D TPChic_t28 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D TPChic_t25 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D TPChic_t06 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D TPChic_t18 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D TPChic_t07 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D TPChic_t08 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D TPChic_t17 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D TPChic_t23 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D TPChic_t32 tRNA-His K14226 tRNA-His; tRNA His D TPChic_t12 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D TPChic_t40 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TPChic_0993a tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TPChic_t10 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TPChic_t16 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TPChic_t22 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TPChic_t21 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D TPChic_t39 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D TPChic_t37 tRNA-Met K14230 tRNA-Met; tRNA Met D TPChic_t29 tRNA-Met K14230 tRNA-Met; tRNA Met D TPChic_t11 tRNA-Met K14230 tRNA-Met; tRNA Met D TPChic_t33 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D TPChic_t27 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D TPChic_t34 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D TPChic_t38 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D TPChic_t01 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TPChic_t02 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TPChic_t04 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TPChic_t05 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TPChic_t13 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D TPChic_t19 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D TPChic_t42 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D TPChic_t14 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D TPChic_t20 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D TPChic_t36 tRNA-Val K14237 tRNA-Val; tRNA Val D TPChic_t09 tRNA-Val K14237 tRNA-Val; tRNA Val D TPChic_t43 tRNA-Val K14237 tRNA-Val; tRNA Val D TPChic_0673 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D TPChic_1020 glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D TPChic_1021 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D TPChic_1017 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D TPChic_0985 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D TPChic_0609 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D TPChic_0672 glyS; glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D TPChic_0837 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D TPChic_0647 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D TPChic_0091 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D TPChic_0798 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D TPChic_0756 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D TPChic_1035 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D TPChic_0586 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D TPChic_0452 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D TPChic_0644 lysS; lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D TPChic_0831 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D TPChic_0160 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D TPChic_0641 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D TPChic_0973 phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D TPChic_0015 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D TPChic_0834 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D TPChic_0632 trpS; tryptophan-tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:tph03060] D TPChic_0235 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D TPChic_0410 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D TPChic_0408a membrane protein K03210 yajC; preprotein translocase subunit YajC D TPChic_0949 inner membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase D TPChic_0379 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D TPChic_0416 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D TPChic_0020a srpB; Bacterial signal recognition particle RNA K01983 ffs; SRP RNA D TPChic_0578 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D TPChic_0185 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D TPChic_0926 signal peptidase I, putative K03100 lepB; signal peptidase I [EC:3.4.21.89] D TPChic_0978 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:tph04122] D TPChic_0863 nitrogen fixation protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D TPChic_0559 thiI; thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] C 03050 Proteasome C 03018 RNA degradation [PATH:tph03018] D TPChic_0817 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D TPChic_0886 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D TPChic_0770 dead-box ATP-dependent rna helicase ydbr K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D TPChic_0103 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D TPChic_0254 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D TPChic_1018 2',3'-cyclic-nucleotide 2'-phosphodiesterase K18682 rny; ribonucrease Y [EC:3.1.-.-] D TPChic_0108 6-phosphofructokinase 3 (Phosphofructokinase 3)(Phosphohexokinase 3) K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D TPChic_0216 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D TPChic_0030 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D TPChic_0596 polynucleotide adenylyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:tph03030] D TPChic_0643 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TPChic_0669 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D TPChic_0521 DNA polymerase III domain-containing protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TPChic_1005 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TPChic_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D TPChic_0058 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D TPChic_0492 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D TPChic_0062 single-stranded DNA-binding protein (SSB) (Helix-destabilizingprotein) K03111 ssb; single-strand DNA-binding protein D TPChic_0353 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D TPChic_0634 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:tph03410] D TPChic_0775 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D TPChic_0343 HhH-GPD family protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D TPChic_0229 DNA polymerase, bacteriophage-type K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D TPChic_0125 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D TPChic_0704 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D TPChic_0634 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:tph03420] D TPChic_0344 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D TPChic_0514 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D TPChic_0116 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D TPChic_0472 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D TPChic_0102 pcrA; ATP-dependent helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TPChic_1028 pcrA; ATP-dependent helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TPChic_0634 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TPChic_0380 DNA or RNA helicase of superfamily II K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] C 03430 Mismatch repair [PATH:tph03430] D TPChic_0328 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D TPChic_0303 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D TPChic_0102 pcrA; ATP-dependent helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TPChic_1028 pcrA; ATP-dependent helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TPChic_0704 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D TPChic_0062 single-stranded DNA-binding protein (SSB) (Helix-destabilizingprotein) K03111 ssb; single-strand DNA-binding protein D TPChic_0669 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D TPChic_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D TPChic_0521 DNA polymerase III domain-containing protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TPChic_1005 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TPChic_0643 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TPChic_0634 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TPChic_0810 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] C 03440 Homologous recombination [PATH:tph03440] D TPChic_0704 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D TPChic_0062 single-stranded DNA-binding protein (SSB) (Helix-destabilizingprotein) K03111 ssb; single-strand DNA-binding protein D TPChic_0003 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D TPChic_1004 recR; recombination protein RecR K06187 recR; recombination protein RecR D TPChic_0692 recA; protein RecA K03553 recA; recombination protein RecA D TPChic_0543 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D TPChic_0162 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D TPChic_0517 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D TPChic_0687 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D TPChic_0669 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D TPChic_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D TPChic_0521 DNA polymerase III domain-containing protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TPChic_1005 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TPChic_0643 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TPChic_0230 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:tph02010] D TPChic_0144 thiamine ABC transporter, thiamine-binding protein K02064 thiB; thiamine transport system substrate-binding protein D TPChic_0143 thiamine ABC transporter, permease protein, putative K02063 thiP; thiamine transport system permease protein D TPChic_0142 Fe(3+) ions import ATP-binding protein FbpC K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D TPChic_0655 spermidine/putrescine ABC transporter, periplasmic binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D TPChic_0654 spermidine/putrescine transport system permease protein PotC K11070 potC; spermidine/putrescine transport system permease protein D TPChic_0653 spermidine/putrescine ABC transporter, permease protein K11071 potB; spermidine/putrescine transport system permease protein D TPChic_0652 spermidine/putrescine import ATP-binding protein PotA K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D TPChic_0804 sn-glycerol-3-phosphate import ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D TPChic_0319 membrane lipoprotein TmpC K07335 bmpA; basic membrane protein A and related proteins D TPChic_0322 ribose/galactose ABC transporter, permease protein K23535 nupB; general nucleoside transport system permease protein D TPChic_0323 ribose/galactose ABC transporter, permease protein K23536 nupC; general nucleoside transport system permease protein D TPChic_0321 ribose import ATP-binding protein RbsA K23537 nupA; general nucleoside transport system ATP-binding protein D TPChic_0545 methylgalactoside ABC transporter, periplasmic galactose-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein D TPChic_0684 glucose/galactose-binding lipoprotein K10540 mglB; methyl-galactoside transport system substrate-binding protein D TPChic_0686 putative Galactoside transport system permease protein MglC-like protein K10541 mglC; methyl-galactoside transport system permease protein D TPChic_0685 galactose/methyl galactoside import ATP-binding protein MglA K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11] D TPChic_0821 membrane lipoprotein TpN32 K02073 metQ; D-methionine transport system substrate-binding protein D TPChic_0119 amino acid ABC transporter, permease protein K02072 metI; D-methionine transport system permease protein D TPChic_0120 methionine import ATP-binding protein MetN K02071 metN; D-methionine transport system ATP-binding protein D TPChic_0034 manganese/zinc/iron chelate uptake ABC transporter, Mzt family, substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein D TPChic_0036 probable metal transport system membrane protein K09816 znuB; zinc transport system permease protein D TPChic_0035 probable metal transport system ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D TPChic_0163 periplasmic zinc-binding protein TroA (Tromp-1) K11707 troA; manganese/zinc/iron transport system substrate-binding protein D TPChic_0165 zinc transport system membrane protein TroC K11708 troC; manganese/zinc/iron transport system permease protein D TPChic_0166 zinc transport system membrane protein TroD K11709 troD; manganese/zinc/iron transport system permease protein D TPChic_0164 zinc transport system ATP-binding protein TroB K11710 troB; manganese/zinc/iron transport system ATP- binding protein [EC:7.2.2.5] D TPChic_0228 BioY family K03523 bioY; biotin transport system substrate-specific component D TPChic_0226 conserved hypothetical protein K16783 bioN; biotin transport system permease protein D TPChic_0227 cobalt ABC transporter, ATP-binding protein K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-] D TPChic_0298 MemBrane lipoprotein TpN38(b) K23510 rfuA; riboflavin transport system substrate-binding protein D TPChic_0301 putative amino acid or sugar ABC transport systems, permease protein K23511 rfuC; riboflavin transport system permease protein D TPChic_0302 putative amino acid or sugar ABC transport systems, permease protein K23512 rfuD; riboflavin transport system permease protein D TPChic_0299 ribose/galactose ABC transporter, ATP-binding protein K23513 rfuB; riboflavin transport system ATP-binding protein D TPChic_0580 lipoprotein releasing system, permease protein, putative K09808 lolC_E; lipoprotein-releasing system permease protein D TPChic_0582 lipoprotein releasing system, permease protein, putative K09808 lolC_E; lipoprotein-releasing system permease protein D TPChic_0581 lolD; lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D TPChic_0884 putative permease, YjgP/YjgQ family K07091 lptF; lipopolysaccharide export system permease protein D TPChic_0883 putative permease, YjgP/YjgQ family K11720 lptG; lipopolysaccharide export system permease protein D TPChic_0786 lipopolysaccharide export system ATP-binding protein LptB K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] C 02060 Phosphotransferase system (PTS) [PATH:tph02060] D TPChic_0589 phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D TPChic_0755 DNA-binding protein/PTS system, IIA component K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D TPChic_0085 PTS system, nitrogen regulatory IIA component K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] C 03070 Bacterial secretion system [PATH:tph03070] D TPChic_0410 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D TPChic_0235 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D TPChic_0408a membrane protein K03210 yajC; preprotein translocase subunit YajC D TPChic_0949 inner membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase D TPChic_0379 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D TPChic_0578 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D TPChic_0416 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] B B 09132 Signal transduction C 02020 Two-component system [PATH:tph02020] D TPChic_0792 hag; flagellin K02406 fliC; flagellin D TPChic_0868 hag; flagellin K02406 fliC; flagellin D TPChic_0870 hag; flagellin K02406 fliC; flagellin D TPChic_0709 RNA polymerase sigma factor WhiG K02405 fliA; RNA polymerase sigma factor FliA D TPChic_0725 chemotaxis protein MotA K02556 motA; chemotaxis protein MotA D TPChic_0001 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D TPChic_0657 csrA; carbon storage regulator K03563 csrA; carbon storage regulator D TPChic_0111 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D TPChic_0630 chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D TPChic_0488 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPChic_0040 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPChic_0639 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPChic_0640 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPChic_0439 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D TPChic_0363 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D TPChic_0366 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D TPChic_0631 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D TPChic_0364 purine-binding chemotaxis protein K02659 pilI; twitching motility protein PilI C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:tph02024] D TPChic_0145 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TPChic_0585 oligopeptide ABC transporter, periplasmic binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TPChic_0949 inner membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase D TPChic_0235 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D TPChic_0408a membrane protein K03210 yajC; preprotein translocase subunit YajC D TPChic_0379 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D TPChic_0578 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D TPChic_0416 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:tph02030] D TPChic_0488 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPChic_0040 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPChic_0639 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPChic_0640 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPChic_0545 methylgalactoside ABC transporter, periplasmic galactose-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein D TPChic_0684 glucose/galactose-binding lipoprotein K10540 mglB; methyl-galactoside transport system substrate-binding protein D TPChic_0363 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D TPChic_0439 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D TPChic_0366 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D TPChic_0365 cheX; chemotaxis protein CheX K03409 cheX; chemotaxis protein CheX D TPChic_0631 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D TPChic_0630 chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D TPChic_0026 flagellar motor switch protein K02410 fliG; flagellar motor switch protein FliG D TPChic_0400 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D TPChic_0721 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D TPChic_0720 flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN D TPChic_0725 chemotaxis protein MotA K02556 motA; chemotaxis protein MotA D TPChic_0724 chemotaxis protein MotB K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:tph02040] D TPChic_0398 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D TPChic_0399 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D TPChic_0026 flagellar motor switch protein K02410 fliG; flagellar motor switch protein FliG D TPChic_0400 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D TPChic_0401 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D TPChic_0402 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D TPChic_0403 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D TPChic_0722 fliL; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D TPChic_0377 fliL; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D TPChic_0721 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D TPChic_0720 flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN D TPChic_0719 putative flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ D TPChic_0718 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D TPChic_0717 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D TPChic_0716 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D TPChic_0714 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D TPChic_0396 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D TPChic_0397 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D TPChic_0728 flgD; flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD D TPChic_0727 flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE D TPChic_0961 flagellar basal-body rod protein K02391 flgF; flagellar basal-body rod protein FlgF D TPChic_0960 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D TPChic_0959 conserved hypothetical protein K02395 flgJ; peptidoglycan hydrolase FlgJ D TPChic_0660 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D TPChic_0659 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D TPChic_0792 hag; flagellin K02406 fliC; flagellin D TPChic_0868 hag; flagellin K02406 fliC; flagellin D TPChic_0870 hag; flagellin K02406 fliC; flagellin D TPChic_0872 flagellar hook-associated protein 2 K02407 fliD; flagellar hook-associated protein 2 D TPChic_0943 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D TPChic_0725 chemotaxis protein MotA K02556 motA; chemotaxis protein MotA D TPChic_0724 chemotaxis protein MotB K02557 motB; chemotaxis protein MotB D TPChic_0493 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D TPChic_0111 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D TPChic_0709 RNA polymerase sigma factor WhiG K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D TPChic_0817 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:tph01501] D TPChic_0965 RND family efflux transporter MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D TPChic_0705 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D TPChic_0500 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D TPChic_0760 penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:tph01502] D TPChic_0670 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D TPChic_0681 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D TPChic_0386 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D TPChic_0345 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D TPChic_0523 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:tph01503] D TPChic_0247 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D TPChic_0965 RND family efflux transporter MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:tph01000] C 01001 Protein kinases [BR:tph01001] D TPChic_0363 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:tph01009] D TPChic_0108 6-phosphofructokinase 3 (Phosphofructokinase 3)(Phosphohexokinase 3) K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D TPChic_0984 chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG C 01002 Peptidases and inhibitors [BR:tph01002] D TPChic_0978 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D TPChic_0112 aminopeptidase C (Bleomycin hydrolase) K01372 BLMH; bleomycin hydrolase [EC:3.4.22.40] D TPChic_0861 glmS; glutamine-fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D TPChic_0445 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein K03152 thiJ; protein deglycase [EC:3.5.1.124] D TPChic_0335 caax amino protease family K07052 K07052; CAAX protease family protein D TPChic_0025 peptidase, M16 family K06972 PITRM1; presequence protease [EC:3.4.24.-] D TPChic_0842 map; methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D TPChic_0569 aminopeptidase P K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D TPChic_0765 putative Cell division protease FtsH-like protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D TPChic_0600 rseP; RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D TPChic_0800 serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D TPChic_0507 clpP; ATP-dependent Clp protease, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D TPChic_1041 clpP; Clp protease K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D TPChic_0524 lon; ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D TPChic_0185 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D TPChic_0926 signal peptidase I, putative K03100 lepB; signal peptidase I [EC:3.4.21.89] D TPChic_0277 carboxyl-protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D TPChic_0997 sppA; signal peptide peptidase SppA, 67K type K04773 sppA; protease IV [EC:3.4.21.-] D TPChic_0982 rhomboid family protein K07059 K07059; rhomboid family protein D TPChic_0688 muramoyltetrapeptide carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D TPChic_0114 hflC; HflC protein K04087 hflC; modulator of FtsH protease HflC D TPChic_0113 hflK; HflK protein K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases [BR:tph01003] D TPChic_0705 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D TPChic_0275 glycosyl transferase, WecB/TagA/CpsF family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] C 01005 Lipopolysaccharide biosynthesis proteins C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:tph01011] D TPChic_0029 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D TPChic_0090 UDP-N-acetylenolpyruvoylglucosamine reductase (UDP-N-acetylmuramate dehydrogenase) K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D TPChic_0341 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D TPChic_0903 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D TPChic_0933 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D TPChic_0670 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D TPChic_0681 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D TPChic_0406 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D TPChic_0688 muramoyltetrapeptide carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D TPChic_0345 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D TPChic_0523 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D TPChic_0516 mviN; integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D TPChic_0705 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D TPChic_0500 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D TPChic_0760 penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D TPChic_0800 serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D TPChic_0043 transglycosylase, SLT family K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D TPChic_0623 membrane-bound lytic murein transglycosylase D K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29] D TPChic_0247 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:tph01004] D TPChic_0145 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TPChic_0361 acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases [BR:tph01006] D TPChic_0683 octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D TPChic_0603 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D TPChic_0637 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] C 01007 Amino acid related enzymes [BR:tph01007] D TPChic_0644 lysS; lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D TPChic_0673 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D TPChic_0834 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D TPChic_0632 trpS; tryptophan-tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D TPChic_0091 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D TPChic_0831 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D TPChic_0798 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D TPChic_0452 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D TPChic_1035 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D TPChic_0586 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D TPChic_0985 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D TPChic_0609 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D TPChic_0641 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D TPChic_0672 glyS; glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D TPChic_0647 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D TPChic_0160 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D TPChic_0837 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D TPChic_1017 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D TPChic_0973 phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D TPChic_0015 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D TPChic_0223 putative aspartate aminotransferase TpAAT K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:tph03000] D TPChic_0167 cation-activated repressor protein K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D TPChic_0357 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D TPChic_0271 probable chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TPChic_0511 transcription factor K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D TPChic_0096 C4 zinc finger domain protein, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor D TPChic_0383 mraZ; MraZ protein K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:tph03021] D TPChic_0380 DNA or RNA helicase of superfamily II K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D TPChic_0212 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D TPChic_0241 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D TPChic_0242 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D TPChic_0701 RNA polymerases K / 14 to 18 kDa subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D TPChic_0493 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D TPChic_1012 RNA polymerase sigma-43 factor K03087 rpoS; RNA polymerase nonessential primary-like sigma factor D TPChic_0092 RNA polymerase sigma-24 factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D TPChic_0111 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D TPChic_0709 RNA polymerase sigma factor WhiG K02405 fliA; RNA polymerase sigma factor FliA D TPChic_0892 transcription elongation protein NusA K02600 nusA; transcription termination/antitermination protein NusA D TPChic_1015 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D TPChic_0236 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG D TPChic_0540 anti-sigma F factor antagonist K04749 rsbV; anti-sigma B factor antagonist D TPChic_0096 C4 zinc finger domain protein, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor D TPChic_0254 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:tph03019] D TPChic_0809 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D TPChic_1018 2',3'-cyclic-nucleotide 2'-phosphodiesterase K18682 rny; ribonucrease Y [EC:3.1.-.-] D TPChic_0770 dead-box ATP-dependent rna helicase ydbr K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D TPChic_0103 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D TPChic_0817 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D TPChic_0886 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D TPChic_0254 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D TPChic_0108 6-phosphofructokinase 3 (Phosphofructokinase 3)(Phosphohexokinase 3) K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D TPChic_0216 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D TPChic_0030 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D TPChic_0596 polynucleotide adenylyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D TPChic_0657 csrA; carbon storage regulator K03563 csrA; carbon storage regulator D TPChic_0526 ATP-dependent RNA helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] C 03041 Spliceosome C 03011 Ribosome [BR:tph03011] D TPChic_0279 bifunctional cytidylate kinase/ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D TPChic_0606 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D TPChic_0195 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D TPChic_0306 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D TPChic_0206 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D TPChic_0063 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D TPChic_0244 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D TPChic_0203 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D TPChic_1024 rpsI; ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D TPChic_0188 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D TPChic_0211 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D TPChic_0243 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D TPChic_0210 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D TPChic_0887 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D TPChic_0905 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D TPChic_0198 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D TPChic_0061 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D TPChic_0193 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D TPChic_0758 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D TPChic_0238 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D TPChic_0192 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D TPChic_0189 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D TPChic_0190 rplD; ribosomal protein L4/L1 family K02926 RP-L4; large subunit ribosomal protein L4 D TPChic_0201 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D TPChic_0204 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D TPChic_0060 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D TPChic_0239 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D TPChic_0237 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D TPChic_0240 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D TPChic_1025 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D TPChic_0199 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D TPChic_0207 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D TPChic_0196 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D TPChic_0213 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D TPChic_0205 ribosomal L18p/L5e family K02881 RP-L18; large subunit ribosomal protein L18 D TPChic_0848 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D TPChic_0745 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D TPChic_0194 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D TPChic_0191 rplW; ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D TPChic_0200 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D TPChic_0743 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D TPChic_0362 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D TPChic_0197 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D TPChic_0206a rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D TPChic_0255 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D TPChic_0807 conserved domain protein K02911 RP-L32; large subunit ribosomal protein L32 D TPChic_0234 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D TPChic_0951 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D TPChic_0849 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D TPChic_0372 ribosomal protein L25, Ctc-form K02897 RP-L25; large subunit ribosomal protein L25 D TPChic_r06 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D TPChic_r03 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D TPChic_r01 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TPChic_r04 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TPChic_r02 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D TPChic_r05 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:tph03009] D TPChic_0809 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D TPChic_0541 era; GTP-binding protein Era K03595 era; GTPase D TPChic_0742 cgtA; Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-] D TPChic_0096 C4 zinc finger domain protein, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor D TPChic_0892 transcription elongation protein NusA K02600 nusA; transcription termination/antitermination protein NusA D TPChic_1015 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D TPChic_0236 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG D TPChic_0337 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D TPChic_0032 ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D TPChic_0276 RNA methyltransferase superfamily K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D TPChic_0946 gidB; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D TPChic_0384 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D TPChic_0975 tetrapyrrole methylase family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D TPChic_0109 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D TPChic_0682 rrmJ; ribosomal RNA large subunit methyltransferase J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D TPChic_0068 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D TPChic_0459 RNA pseudouridine synthase superfamily K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D TPChic_0231 RNA pseudouridine synthase superfamily K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D TPChic_0154 putative S4 domain protein K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D TPChic_0339 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D TPChic_0907 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D TPChic_0770 dead-box ATP-dependent rna helicase ydbr K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D TPChic_0689 engA; ribosome-associated GTPase EngA K03977 engA; GTPase D TPChic_0182 putative YrdC domain protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D TPChic_0890 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D TPChic_0893 hypothetcal protein K09748 rimP; ribosome maturation factor RimP D TPChic_0738 domain of unknown function superfamily K09710 ybeB; ribosome-associated protein D TPChic_0650 putative metalloprotease K07042 ybeY; probable rRNA maturation factor D TPChic_0124 ychF; GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase C 03016 Transfer RNA biogenesis [BR:tph03016] D TPChic_0819 rnz; ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11] D TPChic_0270 polynucleotide adenylyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D TPChic_0673 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D TPChic_0160 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D TPChic_0452 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D TPChic_0586 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D TPChic_0798 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D TPChic_0831 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D TPChic_0985 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D TPChic_1017 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D TPChic_0609 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D TPChic_0672 glyS; glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D TPChic_0837 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D TPChic_0647 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D TPChic_0091 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D TPChic_1035 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D TPChic_0641 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D TPChic_0973 phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D TPChic_0015 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D TPChic_0834 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D TPChic_0632 trpS; tryptophan-tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D TPChic_0464 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D TPChic_0889 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D TPChic_0863 nitrogen fixation protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D TPChic_0182 putative YrdC domain protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D TPChic_0637 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D TPChic_0550 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D TPChic_0044 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D TPChic_0494a Bacterial RNase P class A K01978 rnpB; M1 RNA D TPChic_0644 lysS; lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D TPChic_0980 probable tRNA-dihydrouridine synthase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D TPChic_0754 miaB; tRNA-I(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D TPChic_0269 hypothetical protein K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5] D TPChic_0908 trmD; tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D TPChic_0559 thiI; thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D TPChic_0373 tRNA(Ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D TPChic_0876 yeaZ; universal bacterial protein YeaZ K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D TPChic_0875 ATP-binding protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D TPChic_0886 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:tph03012] D TPChic_0891 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D TPChic_0850 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D TPChic_0605 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts D TPChic_0187 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D TPChic_0450 fusA; translation elongation factor G K02355 fusA; elongation factor G D TPChic_0767 fusA; translation elongation factor G K02355 fusA; elongation factor G D TPChic_0051 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D TPChic_0604 frr; ribosome recycling factor K02838 frr; ribosome recycling factor D TPChic_0052 prmC; protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D TPChic_1011 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D TPChic_0097 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D TPChic_0525 efp; translation elongation factor P K02356 efp; elongation factor P D TPChic_1040 lysyl-tRNA synthetase K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-] D TPChic_0576 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 C 03110 Chaperones and folding catalysts [BR:tph03110] D TPChic_0801 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA D TPChic_0071 clpB; ATP-dependent chaperone protein ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D TPChic_0549 tlyB; hemolysin B K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC D TPChic_0508 clpX; ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D TPChic_0984 chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG D TPChic_0216 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D TPChic_0030 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D TPChic_0217 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D TPChic_0215 grpE; co-chaperone GrpE K03687 GRPE; molecular chaperone GrpE D TPChic_1013 groS; chaperonin GroS K04078 groES; chaperonin GroES D TPChic_0765 putative Cell division protease FtsH-like protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D TPChic_0862 peptidyl-prolyl cis-trans isomerase, fkbp-type, 22 kda K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8] D TPChic_0349 fkbp-type peptidyl-prolyl cis-trans isomerase slyd K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D TPChic_0919 trxA; thioredoxin K03671 TXN; thioredoxin C 04131 Membrane trafficking [BR:tph04131] D TPChic_1010 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D TPChic_0505 hexokinase K00844 HK; hexokinase [EC:2.7.1.1] D TPChic_0844 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D TPChic_0168 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (phosphoglyceromutase) (pgam) (bpg-dependent pgam) (dpgm) K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D TPChic_0984 chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG C 04121 Ubiquitin system C 03051 Proteasome [BR:tph03051] D TPChic_0984 chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:tph03032] D TPChic_0353 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D TPChic_0001 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D TPChic_0058 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D TPChic_0492 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D TPChic_0062 single-stranded DNA-binding protein (SSB) (Helix-destabilizingprotein) K03111 ssb; single-strand DNA-binding protein D TPChic_0669 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D TPChic_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D TPChic_0643 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TPChic_0521 DNA polymerase III domain-containing protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TPChic_1005 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TPChic_0634 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TPChic_0810 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D TPChic_0005 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D TPChic_1006 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D TPChic_0394 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:tph03036] D TPChic_0809 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D TPChic_0001 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D TPChic_1038 antigen TpF1 K04047 dps; starvation-inducible DNA-binding protein D TPChic_0367 smc; chromosome segregation protein SMC K03529 smc; chromosome segregation protein D TPChic_0691 ScpA/B protein K05896 scpA; segregation and condensation protein A D TPChic_0458 scpB; segregation and condensation protein B K06024 scpB; segregation and condensation protein B D TPChic_0389 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D TPChic_0760 penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D TPChic_0999 spoIIIE; stage III sporulation protein E K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D TPChic_0385 cell division protein FtsL, putative K03586 ftsL; cell division protein FtsL D TPChic_0388 cell division protein K03589 ftsQ; cell division protein FtsQ D TPChic_0387 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW D TPChic_0390 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D TPChic_0247 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D TPChic_0965 RND family efflux transporter MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D TPChic_0497 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D TPChic_0498 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D TPChic_0499 mreD; rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D TPChic_0501 mrdB; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D TPChic_0272 soj; sporulation initiation inhibitor protein Soj K03496 parA; chromosome partitioning protein D TPChic_0271 probable chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TPChic_0044 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D TPChic_0946 gidB; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D TPChic_0391 xerD; tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD C 03400 DNA repair and recombination proteins [BR:tph03400] D TPChic_0141 methylated-DNA-protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D TPChic_0343 HhH-GPD family protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D TPChic_0775 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D TPChic_0380 DNA or RNA helicase of superfamily II K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D TPChic_0885 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D TPChic_0229 DNA polymerase, bacteriophage-type K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D TPChic_0125 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D TPChic_0704 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D TPChic_0634 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TPChic_0514 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D TPChic_0116 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D TPChic_0472 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D TPChic_0102 pcrA; ATP-dependent helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TPChic_1028 pcrA; ATP-dependent helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TPChic_0241 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D TPChic_0242 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D TPChic_0212 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D TPChic_0701 RNA polymerases K / 14 to 18 kDa subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D TPChic_0344 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D TPChic_0328 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D TPChic_0303 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D TPChic_0669 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D TPChic_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D TPChic_0643 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TPChic_0521 DNA polymerase III domain-containing protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TPChic_1005 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TPChic_0062 single-stranded DNA-binding protein (SSB) (Helix-destabilizingprotein) K03111 ssb; single-strand DNA-binding protein D TPChic_0810 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D TPChic_0692 recA; protein RecA K03553 recA; recombination protein RecA D TPChic_0543 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D TPChic_0162 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D TPChic_0517 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D TPChic_0230 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D TPChic_0627 nuclease sbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 D TPChic_0626 exonuclease, putative K03547 sbcD; DNA repair protein SbcD/Mre11 D TPChic_1022 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D TPChic_0003 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D TPChic_0687 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D TPChic_1004 recR; recombination protein RecR K06187 recR; recombination protein RecR D TPChic_0442 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D TPChic_0005 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D TPChic_1006 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D TPChic_0394 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D TPChic_0103 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D TPChic_1023 regulatory protein RecX K03565 recX; regulatory protein D TPChic_1008 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TPChic_0053 ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D TPChic_0436 DHH superfamily protein, subfamily 1 K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] C 03029 Mitochondrial biogenesis [BR:tph03029] D TPChic_0891 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D TPChic_0850 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D TPChic_0605 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts D TPChic_0187 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D TPChic_0450 fusA; translation elongation factor G K02355 fusA; elongation factor G D TPChic_0767 fusA; translation elongation factor G K02355 fusA; elongation factor G D TPChic_0541 era; GTP-binding protein Era K03595 era; GTPase D TPChic_0834 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D TPChic_0586 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D TPChic_0985 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D TPChic_0672 glyS; glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D TPChic_0831 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D TPChic_1020 glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D TPChic_1021 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D TPChic_0062 single-stranded DNA-binding protein (SSB) (Helix-destabilizingprotein) K03111 ssb; single-strand DNA-binding protein D TPChic_0326 yaeT; outer membrane protein assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family D TPChic_0216 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D TPChic_0215 grpE; co-chaperone GrpE K03687 GRPE; molecular chaperone GrpE D TPChic_0030 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D TPChic_1013 groS; chaperonin GroS K04078 groES; chaperonin GroES D TPChic_0217 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D TPChic_0863 nitrogen fixation protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D TPChic_0949 inner membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase D TPChic_0984 chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:tph02000] D TPChic_0144 thiamine ABC transporter, thiamine-binding protein K02064 thiB; thiamine transport system substrate-binding protein D TPChic_0143 thiamine ABC transporter, permease protein, putative K02063 thiP; thiamine transport system permease protein D TPChic_0142 Fe(3+) ions import ATP-binding protein FbpC K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D TPChic_0655 spermidine/putrescine ABC transporter, periplasmic binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D TPChic_0654 spermidine/putrescine transport system permease protein PotC K11070 potC; spermidine/putrescine transport system permease protein D TPChic_0653 spermidine/putrescine ABC transporter, permease protein K11071 potB; spermidine/putrescine transport system permease protein D TPChic_0652 spermidine/putrescine import ATP-binding protein PotA K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D TPChic_0804 sn-glycerol-3-phosphate import ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D TPChic_0545 methylgalactoside ABC transporter, periplasmic galactose-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein D TPChic_0684 glucose/galactose-binding lipoprotein K10540 mglB; methyl-galactoside transport system substrate-binding protein D TPChic_0686 putative Galactoside transport system permease protein MglC-like protein K10541 mglC; methyl-galactoside transport system permease protein D TPChic_0685 galactose/methyl galactoside import ATP-binding protein MglA K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11] D TPChic_0319 membrane lipoprotein TmpC K07335 bmpA; basic membrane protein A and related proteins D TPChic_0322 ribose/galactose ABC transporter, permease protein K23535 nupB; general nucleoside transport system permease protein D TPChic_0323 ribose/galactose ABC transporter, permease protein K23536 nupC; general nucleoside transport system permease protein D TPChic_0321 ribose import ATP-binding protein RbsA K23537 nupA; general nucleoside transport system ATP-binding protein D TPChic_0298 MemBrane lipoprotein TpN38(b) K23510 rfuA; riboflavin transport system substrate-binding protein D TPChic_0301 putative amino acid or sugar ABC transport systems, permease protein K23511 rfuC; riboflavin transport system permease protein D TPChic_0302 putative amino acid or sugar ABC transport systems, permease protein K23512 rfuD; riboflavin transport system permease protein D TPChic_0299 ribose/galactose ABC transporter, ATP-binding protein K23513 rfuB; riboflavin transport system ATP-binding protein D TPChic_0074 sugar ABC transporter, periplasmic binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D TPChic_0737 sugar ABC transporter, periplasmic binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D TPChic_0075 sugar ABC transporter, permease protein K02025 ABC.MS.P; multiple sugar transport system permease protein D TPChic_0076 sugar ABC transporter, permease protein K02026 ABC.MS.P1; multiple sugar transport system permease protein D TPChic_0821 membrane lipoprotein TpN32 K02073 metQ; D-methionine transport system substrate-binding protein D TPChic_0119 amino acid ABC transporter, permease protein K02072 metI; D-methionine transport system permease protein D TPChic_0120 methionine import ATP-binding protein MetN K02071 metN; D-methionine transport system ATP-binding protein D TPChic_0308 amino acid ABC transporter, periplasmic binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D TPChic_0585 oligopeptide ABC transporter, periplasmic binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TPChic_0034 manganese/zinc/iron chelate uptake ABC transporter, Mzt family, substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein D TPChic_0036 probable metal transport system membrane protein K09816 znuB; zinc transport system permease protein D TPChic_0035 probable metal transport system ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D TPChic_0163 periplasmic zinc-binding protein TroA (Tromp-1) K11707 troA; manganese/zinc/iron transport system substrate-binding protein D TPChic_0165 zinc transport system membrane protein TroC K11708 troC; manganese/zinc/iron transport system permease protein D TPChic_0166 zinc transport system membrane protein TroD K11709 troD; manganese/zinc/iron transport system permease protein D TPChic_0164 zinc transport system ATP-binding protein TroB K11710 troB; manganese/zinc/iron transport system ATP- binding protein [EC:7.2.2.5] D TPChic_0228 BioY family K03523 bioY; biotin transport system substrate-specific component D TPChic_0226 conserved hypothetical protein K16783 bioN; biotin transport system permease protein D TPChic_0227 cobalt ABC transporter, ATP-binding protein K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-] D TPChic_0884 putative permease, YjgP/YjgQ family K07091 lptF; lipopolysaccharide export system permease protein D TPChic_0883 putative permease, YjgP/YjgQ family K11720 lptG; lipopolysaccharide export system permease protein D TPChic_0786 lipopolysaccharide export system ATP-binding protein LptB K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D TPChic_0880 membrane spanning protein, putative K25151 gldF; gliding motility-associated transport system permease protein D TPChic_0881 ABC transporter, ATP-binding protein K25152 gldA; gliding motility-associated transport system ATP-binding protein D TPChic_0879 conserved hypothetical protein K25153 gldG; gliding motility-associatede transport system auxiliary component D TPChic_0580 lipoprotein releasing system, permease protein, putative K09808 lolC_E; lipoprotein-releasing system permease protein D TPChic_0582 lipoprotein releasing system, permease protein, putative K09808 lolC_E; lipoprotein-releasing system permease protein D TPChic_0581 lolD; lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D TPChic_0962 putative efflux ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein D TPChic_0963 macrolide export ATP-binding/permease protein MacB K02004 ABC.CD.P; putative ABC transport system permease protein D TPChic_0964 macrolide export ATP-binding/permease protein MacB 1/2 K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D TPChic_0611 sufC; FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein D TPChic_0901 mate efflux family protein K26937 dinF; MATE family, multidrug efflux pump D TPChic_0589 phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D TPChic_0755 DNA-binding protein/PTS system, IIA component K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D TPChic_0085 PTS system, nitrogen regulatory IIA component K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D TPChic_0917 mgtE; magnesium transporter K06213 mgtE; magnesium transporter D TPChic_0725 chemotaxis protein MotA K02556 motA; chemotaxis protein MotA D TPChic_0724 chemotaxis protein MotB K02557 motB; chemotaxis protein MotB D TPChic_0027 hemolysin, putative K03699 tlyC; magnesium and cobalt exporter, CNNM family D TPChic_0326 yaeT; outer membrane protein assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family D TPChic_0785 conserved hypothetical protein K09774 lptA; lipopolysaccharide export system protein LptA D TPChic_0649 hemolysin K06189 corC; hemolysin (HlyC) family protein D TPChic_1034 putative K+-dependent Na+/Ca+ exchanger-like protein K07301 yrbG; cation:H+ antiporter D TPChic_0140 K+ transport protein K03498 trkH; trk/ktr system potassium uptake protein D TPChic_0024 TrkA domain protein K03499 trkA; trk/ktr system potassium uptake protein D TPChic_0513 potassium transporter peripheral membrane component K03499 trkA; trk/ktr system potassium uptake protein D TPChic_0139 TrkA domain protein K03499 trkA; trk/ktr system potassium uptake protein D TPChic_0771 Na/Pi cotransporter family protein K03324 yjbB; phosphate:Na+ symporter D TPChic_0516 mviN; integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D TPChic_0387 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW D TPChic_0972 iron permease FTR1 family K07243 FTR; high-affinity iron transporter D TPChic_0971 34 kDa membrane antigen K07230 p19; periplasmic iron binding protein D TPChic_0057 oxaloacetate decarboxylase, subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D TPChic_0056 oadA; oxaloacetate decarboxylase alpha subunit K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D TPChic_0055 sodium pump decarboxylase, gamma subunit subfamily K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma D TPChic_0101 cytochrome c biogenesis protein K06196 ccdA; cytochrome c-type biogenesis protein D TPChic_0965 RND family efflux transporter MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D TPChic_0774 Mg2+ transport protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein C 02044 Secretion system [BR:tph02044] D TPChic_0364 purine-binding chemotaxis protein K02659 pilI; twitching motility protein PilI D TPChic_0274 dCMP deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12] D TPChic_0714 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D TPChic_0911 FlhB domain protein K04061 flhB2; flagellar biosynthesis protein D TPChic_0399 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D TPChic_0401 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D TPChic_0402 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D TPChic_0720 flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN D TPChic_0719 putative flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ D TPChic_0718 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D TPChic_0717 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D TPChic_0716 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D TPChic_0379 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D TPChic_0410 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D TPChic_0235 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D TPChic_0416 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D TPChic_0578 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D TPChic_0408a membrane protein K03210 yajC; preprotein translocase subunit YajC D TPChic_0949 inner membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase C 02042 Bacterial toxins [BR:tph02042] D TPChic_0027 hemolysin, putative K03699 tlyC; magnesium and cobalt exporter, CNNM family D TPChic_1037 membrane protein K11068 hlyIII; hemolysin III C 02022 Two-component system [BR:tph02022] D TPChic_0363 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D TPChic_0366 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D TPChic_0631 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] C 02035 Bacterial motility proteins [BR:tph02035] D TPChic_0363 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D TPChic_0439 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D TPChic_0365 cheX; chemotaxis protein CheX K03409 cheX; chemotaxis protein CheX D TPChic_0630 chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D TPChic_0631 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D TPChic_0366 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D TPChic_0488 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPChic_0040 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPChic_0639 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPChic_0640 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPChic_0401 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D TPChic_0402 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D TPChic_0403 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D TPChic_0719 putative flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ D TPChic_0718 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D TPChic_0717 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D TPChic_0716 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D TPChic_0714 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D TPChic_0026 flagellar motor switch protein K02410 fliG; flagellar motor switch protein FliG D TPChic_0400 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D TPChic_0721 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D TPChic_0720 flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN D TPChic_0399 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D TPChic_0722 fliL; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D TPChic_0377 fliL; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D TPChic_0398 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D TPChic_0396 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D TPChic_0397 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D TPChic_0728 flgD; flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD D TPChic_0961 flagellar basal-body rod protein K02391 flgF; flagellar basal-body rod protein FlgF D TPChic_0960 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D TPChic_0959 conserved hypothetical protein K02395 flgJ; peptidoglycan hydrolase FlgJ D TPChic_0727 flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE D TPChic_0660 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D TPChic_0659 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D TPChic_0792 hag; flagellin K02406 fliC; flagellin D TPChic_0868 hag; flagellin K02406 fliC; flagellin D TPChic_0870 hag; flagellin K02406 fliC; flagellin D TPChic_0872 flagellar hook-associated protein 2 K02407 fliD; flagellar hook-associated protein 2 D TPChic_0943 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D TPChic_0709 RNA polymerase sigma factor WhiG K02405 fliA; RNA polymerase sigma factor FliA D TPChic_0725 chemotaxis protein MotA K02556 motA; chemotaxis protein MotA D TPChic_0724 chemotaxis protein MotB K02557 motB; chemotaxis protein MotB D TPChic_0658 flagellar assembly factor FliW K13626 fliW; flagellar assembly factor FliW D TPChic_0567 22.5K protein K02383 flbB; flagellar protein FlbB D TPChic_0726 flagellar protein-related protein K02385 flbD; flagellar protein FlbD D TPChic_0713 flhF; flagellar biosynthetic protein FlhF K02404 flhF; flagellar biosynthesis protein FlhF D TPChic_0853 ATP-binding protein K04562 flhG; flagellar biosynthesis protein FlhG D TPChic_0712 ATP-binding protein K04562 flhG; flagellar biosynthesis protein FlhG D TPChic_0364 purine-binding chemotaxis protein K02659 pilI; twitching motility protein PilI C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:tph04812] D TPChic_0497 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D TPChic_0390 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D TPChic_0389 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D TPChic_0272 soj; sporulation initiation inhibitor protein Soj K03496 parA; chromosome partitioning protein D TPChic_0271 probable chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:tph04147] D TPChic_0984 chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG D TPChic_0817 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D TPChic_0844 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D TPChic_0538 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D TPChic_0030 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D TPChic_0216 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D TPChic_0475 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D TPChic_0187 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D TPChic_0145 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TPChic_0595 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D TPChic_1039 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D TPChic_0418 putative galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D TPChic_0478 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D TPChic_0537 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D TPChic_0168 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (phosphoglyceromutase) (pgam) (bpg-dependent pgam) (dpgm) K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] C 02048 Prokaryotic defense system [BR:tph02048] D TPChic_0810 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D TPChic_0390 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D TPChic_0497 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D TPChic_0673 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D TPChic_0863 nitrogen fixation protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules [BR:tph04090] C 01504 Antimicrobial resistance genes [BR:tph01504] D TPChic_0965 RND family efflux transporter MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:tph00537] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:tph03100] D TPChic_t15 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D TPChic_t41 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D TPChic_t44 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D TPChic_t03 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TPChic_t30 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TPChic_t35 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TPChic_t31 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TPChic_t26 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TPChic_t24 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D TPChic_t28 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D TPChic_t25 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D TPChic_t06 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D TPChic_t18 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D TPChic_t07 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D TPChic_t08 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D TPChic_t17 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D TPChic_t23 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D TPChic_t32 tRNA-His K14226 tRNA-His; tRNA His D TPChic_t12 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D TPChic_t40 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TPChic_0993a tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TPChic_t10 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TPChic_t16 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TPChic_t22 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TPChic_t21 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D TPChic_t39 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D TPChic_t37 tRNA-Met K14230 tRNA-Met; tRNA Met D TPChic_t29 tRNA-Met K14230 tRNA-Met; tRNA Met D TPChic_t11 tRNA-Met K14230 tRNA-Met; tRNA Met D TPChic_t33 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D TPChic_t27 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D TPChic_t34 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D TPChic_t38 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D TPChic_t01 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TPChic_t02 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TPChic_t04 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TPChic_t05 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TPChic_t13 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D TPChic_t19 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D TPChic_t42 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D TPChic_t14 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D TPChic_t20 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D TPChic_t36 tRNA-Val K14237 tRNA-Val; tRNA Val D TPChic_t09 tRNA-Val K14237 tRNA-Val; tRNA Val D TPChic_t43 tRNA-Val K14237 tRNA-Val; tRNA Val D TPChic_r01 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TPChic_r04 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TPChic_r02 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D TPChic_r05 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D TPChic_r06 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D TPChic_r03 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D TPChic_0020a srpB; Bacterial signal recognition particle RNA K01983 ffs; SRP RNA D TPChic_0494a Bacterial RNase P class A K01978 rnpB; M1 RNA D TPChic_tm1 ssrA; tmRNA K15035 ssrA; transfer-messenger RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D TPChic_0633 peptide methionine sulfoxide reductase MsrB/msrA K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12] D TPChic_0509 alkyl hydroperoxide reductase subunit C K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26] D TPChic_0823 desulfoferrodoxin K05919 dfx; superoxide reductase [EC:1.15.1.2] D TPChic_0417 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D TPChic_0252 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D TPChic_0852 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D TPChic_0796 thiamine biosynthesis lipoprotein ApbE K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D TPChic_0826 domain of unknown function superfamily K18672 dacA; diadenylate cyclase [EC:2.7.7.85] D TPChic_0591 hprK; HPr(Ser) kinase/phosphatase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] D TPChic_0902 carboxylesterase K03928 yvaK; carboxylesterase [EC:3.1.1.1] D TPChic_0156 thioesterase family protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D TPChic_0979 TatD family hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D TPChic_0994 TatD family hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D TPChic_0757 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] C 99981 Carbohydrate metabolism C 99982 Energy metabolism D TPChic_0615 SUF system FeS assembly protein, NifU family K04488 iscU; nitrogen fixation protein NifU and related proteins D TPChic_0925 flavodoxin K03839 fldA; flavodoxin I C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism C 99986 Glycan metabolism C 99987 Cofactor metabolism C 99988 Secondary metabolism C 99999 Others B B 09192 Unclassified: genetic information processing C 99973 Transcription C 99974 Translation C 99975 Protein processing D TPChic_0506 tig; trigger factor K03545 tig; trigger factor D TPChic_0184 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein D TPChic_0866 putative Mg chelatase-like protein K07391 comM; magnesium chelatase family protein C 99976 Replication and repair D TPChic_0913 hypothetical protein K07460 yraN; putative endonuclease D TPChic_0393 dprA; DNA protecting protein DprA K04096 smf; DNA processing protein C 99979 Viral proteins C 99998 Others B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D TPChic_0106 choline/carnitine/betaine transporter family protein K03451 TC.BCT; betaine/carnitine transporter, BCCT family D TPChic_0023 sodium- and chloride- dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D TPChic_0414 D-alanine glycine permease K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D TPChic_0998 amino-acid carrier protein AlsT K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D TPChic_0265 brnQ; branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family C 99978 Cell growth D TPChic_0948 SpoIIIJ-associated protein K06346 jag; spoIIIJ-associated protein C 99993 Cell motility C 99995 Signaling proteins C 99992 Structural proteins C 99994 Others B B 09194 Poorly characterized C 99996 General function prediction only D TPChic_0522 cvpA; CvpA family protein K03558 cvpA; membrane protein required for colicin V production D TPChic_1033 patatin family protein K07001 K07001; NTE family protein D TPChic_0158 HAD-superfamily hydrolase, subfamily IA, variant 3 K07025 K07025; putative hydrolase of the HAD superfamily D TPChic_0612 sufB; FeS assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB D TPChic_0613 FeS assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD D TPChic_0571 Tp70 protein K03744 lemA; LemA protein D TPChic_0312 membrane protein, putative K08974 K08974; putative membrane protein D TPChic_0570 conserved hypothetical protein K08988 K08988; putative membrane protein C 99997 Function unknown D TPChic_0502 putative ankyrin repeat-containing protein K06867 K06867; uncharacterized protein D TPChic_0835 ankyrin repeat-containing protein K06867 K06867; uncharacterized protein D TPChic_0561 conserved hypothetical protein K06872 K06872; uncharacterized protein D TPChic_0906 KH domain-containing protein K06960 K06960; uncharacterized protein D TPChic_0815 acetyltransferase, gnat family K06976 K06976; uncharacterized protein D TPChic_0790 antibiotic transport protein, putative K07003 K07003; uncharacterized protein D TPChic_0544 endonuclease/exonuclease/phosphatase family K07004 K07004; uncharacterized protein D TPChic_0038 regulatory protein K07035 K07035; uncharacterized protein D TPChic_0937 phosphodiesterase, family K07095 K07095; uncharacterized protein D TPChic_0050 phosphoribosyl transferase domain protein K07101 K07101; uncharacterized protein D TPChic_0494 putative treponemal protein K07164 K07164; uncharacterized protein D TPChic_0949a hypothetical protein K08998 K08998; uncharacterized protein D TPChic_0087 lipoprotein, putative K09005 K09005; uncharacterized protein D TPChic_0710 putative polymerase K09749 K09749; uncharacterized protein D TPChic_0829 conserved hypothetical protein K09766 K09766; uncharacterized protein D TPChic_0845 P23 protein, putative K09768 K09768; uncharacterized protein D TPChic_0153 divergent PAP2 family K09775 K09775; uncharacterized protein D TPChic_0565 hypothetical protein K09795 K09795; uncharacterized protein D TPChic_0744 conserved hypothetical protein K07584 ysxB; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 22, 2024