+D GENES KO
#
KEGG Orthology (KO) - Candidatus Tremblaya phenacola
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis
C 00020 Citrate cycle (TCA cycle)
D TPPAVE_077 sucD; succinyl-CoA synthetase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D TPPAVE_076 sucC; succinyl-CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
C 00030 Pentose phosphate pathway [PATH:tpj00030]
D TPPAVE_207 talB; transaldolase B K00616 TALDO1; transaldolase [EC:2.2.1.2]
D TPPAVE_199 prs; phosphoribosylpyrophosphate synthetase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
C 00040 Pentose and glucuronate interconversions
C 00051 Fructose and mannose metabolism
C 00052 Galactose metabolism
C 00053 Ascorbate and aldarate metabolism
C 00500 Starch and sucrose metabolism
C 00520 Amino sugar and nucleotide sugar metabolism
C 00620 Pyruvate metabolism
D TPPAVE_062 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism
C 00640 Propanoate metabolism
D TPPAVE_076 sucC; succinyl-CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D TPPAVE_077 sucD; succinyl-CoA synthetase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
C 00650 Butanoate metabolism
D TPPAVE_060 ilvB; acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:tpj00660]
D TPPAVE_060 ilvB; acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D TPPAVE_076 sucC; succinyl-CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D TPPAVE_077 sucD; succinyl-CoA synthetase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D TPPAVE_001 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D TPPAVE_002 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D TPPAVE_003 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle
D TPPAVE_207 talB; transaldolase B K00616 TALDO1; transaldolase [EC:2.2.1.2]
C 00720 Other carbon fixation pathways [PATH:tpj00720]
D TPPAVE_077 sucD; succinyl-CoA synthetase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D TPPAVE_076 sucC; succinyl-CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D TPPAVE_053 metF; putative 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
C 00680 Methane metabolism
C 00910 Nitrogen metabolism
C 00920 Sulfur metabolism
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism
C 00564 Glycerophospholipid metabolism
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:tpj00230]
D TPPAVE_199 prs; phosphoribosylpyrophosphate synthetase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D TPPAVE_134 ndk; putative nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
C 00240 Pyrimidine metabolism [PATH:tpj00240]
D TPPAVE_120 carB; carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D TPPAVE_121 carA; carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D TPPAVE_134 ndk; putative nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D TPPAVE_049 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:tpj00250]
D TPPAVE_015 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D TPPAVE_116 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D TPPAVE_120 carB; carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D TPPAVE_121 carA; carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
C 00260 Glycine, serine and threonine metabolism [PATH:tpj00260]
D TPPAVE_089 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D TPPAVE_004 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D TPPAVE_113 thrA; putative homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D TPPAVE_012 thrB; homoserine kinase K02204 thrB2; homoserine kinase type II [EC:2.7.1.39]
D TPPAVE_114 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D TPPAVE_007 trpA; tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D TPPAVE_006 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:tpj00270]
D TPPAVE_031 metE; cobalamin-independent homocysteine transmethylase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D TPPAVE_089 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D TPPAVE_004 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D TPPAVE_113 thrA; putative homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
C 00280 Valine, leucine and isoleucine degradation
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:tpj00290]
D TPPAVE_001 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D TPPAVE_002 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D TPPAVE_003 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D TPPAVE_060 ilvB; acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D TPPAVE_061 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D TPPAVE_041 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D TPPAVE_062 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:tpj00300]
D TPPAVE_113 thrA; putative homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D TPPAVE_089 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D TPPAVE_004 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D TPPAVE_070 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D TPPAVE_210 dapB; Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D TPPAVE_095 dapD; tetrahydrodipicolinate succinylase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
C 00310 Lysine degradation
C 00220 Arginine biosynthesis [PATH:tpj00220]
D TPPAVE_035 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D TPPAVE_015 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D TPPAVE_116 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D TPPAVE_120 carB; carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D TPPAVE_121 carA; carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
C 00330 Arginine and proline metabolism
C 00340 Histidine metabolism [PATH:tpj00340]
D TPPAVE_145 hisG; ATP phosphoribosyltransferase catalytic subunit K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D TPPAVE_140 hisI; bifunctional phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphatase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D TPPAVE_142 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D TPPAVE_143 hisH; imidazole glycerol phosphate synthase, subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D TPPAVE_141 hisF; imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D TPPAVE_144 hisB; putative imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
C 00350 Tyrosine metabolism
C 00360 Phenylalanine metabolism
C 00380 Tryptophan metabolism
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:tpj00400]
D TPPAVE_029 aroG; phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D TPPAVE_146 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D TPPAVE_126 aroD; 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D TPPAVE_125 aroE; shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D TPPAVE_147 aroK; putative shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D TPPAVE_048 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D TPPAVE_101 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D TPPAVE_083 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D TPPAVE_082 trpG; glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D TPPAVE_081 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D TPPAVE_005 trpF; putative N-(5'-phosphoribosyl)anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D TPPAVE_080 trpC; putative indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D TPPAVE_007 trpA; tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D TPPAVE_006 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D TPPAVE_047 pheA; chorismate mutase/prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism
C 00430 Taurine and hypotaurine metabolism
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:tpj00450]
D TPPAVE_031 metE; cobalamin-independent homocysteine transmethylase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D TPPAVE_018 trxB; thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
C 00460 Cyanoamino acid metabolism
C 00470 D-Amino acid metabolism
C 00480 Glutathione metabolism
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis
C 00550 Peptidoglycan biosynthesis
C 00552 Teichoic acid biosynthesis
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism
D TPPAVE_066 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 00740 Riboflavin metabolism
D TPPAVE_019 ribE; putative 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
C 00750 Vitamin B6 metabolism
D TPPAVE_114 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism
C 00770 Pantothenate and CoA biosynthesis [PATH:tpj00770]
D TPPAVE_060 ilvB; acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D TPPAVE_061 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D TPPAVE_041 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
C 00780 Biotin metabolism
C 00785 Lipoic acid metabolism
C 00790 Folate biosynthesis
C 00670 One carbon pool by folate [PATH:tpj00670]
D TPPAVE_196 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D TPPAVE_053 metF; putative 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism
D TPPAVE_091 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis
C 00261 Monobactam biosynthesis [PATH:tpj00261]
D TPPAVE_089 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D TPPAVE_004 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D TPPAVE_070 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D TPPAVE_210 dapB; Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis
C 00401 Novobiocin biosynthesis
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D TPPAVE_083 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D TPPAVE_082 trpG; glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
C 00999 Biosynthesis of various plant secondary metabolites
D TPPAVE_125 aroE; shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation
D TPPAVE_068 (2Fe-2S) ferredoxin K04755 fdx; ferredoxin, 2Fe-2S
C 00627 Aminobenzoate degradation
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:tpj03020]
D TPPAVE_180 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D TPPAVE_179 rpoC; DNA-directed RNA polymerase subunit beta prime K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D TPPAVE_149 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:tpj03010]
D TPPAVE_050 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D TPPAVE_096 rpsB; 30S ribosomal subunit protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D TPPAVE_167 rpsC; 30S ribosomal subunit protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D TPPAVE_150 rpsD; 30S ribosomal subunit protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D TPPAVE_158 rpsE; 30S ribosomal subunit protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D TPPAVE_110 rpsF; 30S ribosomal subunit protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D TPPAVE_177 rpsG; 30S ribosomal subunit protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D TPPAVE_161 rpsH; putative 30S ribosomal subunit protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D TPPAVE_039 rpsI; 30S ribosomal subunit protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D TPPAVE_174 rpsJ; 30S ribosomal subunit protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D TPPAVE_151 rpsK; 30S ribosomal subunit protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D TPPAVE_178 rpsL; 30S ribosomal subunit protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D TPPAVE_152 rpsM; 30S ribosomal subunit protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D TPPAVE_162 rpsN; putative 30S ribosomal subunit protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D TPPAVE_063 rpsO; 30S ribosomal subunit protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D TPPAVE_051 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D TPPAVE_165 rpsQ; 30S ribosomal subunit protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D TPPAVE_111 rpsR; 30S ribosomal subunit protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D TPPAVE_169 rpsS; 30S ribosomal subunit protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D TPPAVE_036 rpsT; 30S ribosomal subunit protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D TPPAVE_010 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D TPPAVE_182 rplA; putative 50S ribosomal subunit protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D TPPAVE_170 rplB; 50S ribosomal subunit protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D TPPAVE_173 rplC; 50S ribosomal subunit protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D TPPAVE_172 rplD; putative 50S ribosomal subunit protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D TPPAVE_163 rplE; putative 50S ribosomal subunit protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D TPPAVE_160 rplF; 50S ribosomal subunit protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D TPPAVE_181 rplLJ; 50S ribosomal subunit proteins L7/L12 and L10 K02935 RP-L7; large subunit ribosomal protein L7/L12
D TPPAVE_183 rplK; 50S ribosomal subunit protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D TPPAVE_038 rplM; 50S ribosomal subunit protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D TPPAVE_164 rplN; 50S ribosomal subunit protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D TPPAVE_156 rplO; 50S ribosomal subunit protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D TPPAVE_166 rplP; 50S ribosomal subunit protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D TPPAVE_159 rplR; 50S ribosomal subunit protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D TPPAVE_052 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D TPPAVE_106 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D TPPAVE_p2 rplU; putative 50S ribosomal subunit protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D TPPAVE_168 rplV; 50S ribosomal subunit protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D TPPAVE_200 rplY; 50S ribosomal subunit protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D TPPAVE_p1 rpmA; putative 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D TPPAVE_157 rpmD; 50S ribosomal subunit protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D TPPAVE_115 rpmE; 50S ribosomal subunit protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D TPPAVE_022 rpmF; 50S ribosomal subunit protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D TPPAVE_072 rpmG; 50S ribosomal subunit protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D TPPAVE_105 rpmI; 50S ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35
D TPPAVE_153 rpmJ; putative 50S ribosomal subunit protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D TPPAVE_191 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D TPPAVE_190 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D TPPAVE_064 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D TPPAVE_189 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:tpj00970]
D TPPAVE_085 trnA; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D TPPAVE_130 trnR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D TPPAVE_044 trnR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D TPPAVE_024 trnN; tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D TPPAVE_093 trnD; tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D TPPAVE_020 trnC; tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D TPPAVE_198 trnQ; tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D TPPAVE_092 trnE; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D TPPAVE_186 trnG; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D TPPAVE_021 trnG; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D TPPAVE_118 trnH; tRNA-His K14226 tRNA-His; tRNA His
D TPPAVE_084 trnI; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D TPPAVE_123 trnL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D TPPAVE_042 trnL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D TPPAVE_137 trnK; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D TPPAVE_057 trnK; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D TPPAVE_008 trnM; tRNA-Met K14230 tRNA-Met; tRNA Met
D TPPAVE_075 trnM; tRNA-Met K14230 tRNA-Met; tRNA Met
D TPPAVE_128 trnM; tRNA-Met K14230 tRNA-Met; tRNA Met
D TPPAVE_195 trnF; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D TPPAVE_131 trnP; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D TPPAVE_016 trnS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D TPPAVE_043 trnS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D TPPAVE_086 trnS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D TPPAVE_090 trnS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D TPPAVE_138 trnT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D TPPAVE_185 trnT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D TPPAVE_032 trnT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D TPPAVE_184 trnW; tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D TPPAVE_187 trnY; tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D TPPAVE_102 trnV; tRNA-Val K14237 tRNA-Val; tRNA Val
D TPPAVE_091 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D TPPAVE_193 gatA; glutamyl-tRNA(Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D TPPAVE_192 gatB; glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D TPPAVE_129 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D TPPAVE_206 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D TPPAVE_203 glyQ; glycyl-tRNA synthetase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D TPPAVE_103 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D TPPAVE_017 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D TPPAVE_087 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D TPPAVE_196 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D TPPAVE_099 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D TPPAVE_209 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D TPPAVE_074 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D TPPAVE_127 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D TPPAVE_133 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D TPPAVE_107 pheS; phenylalanyl-tRNA synthetase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D TPPAVE_108 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:tpj04122]
D TPPAVE_066 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D TPPAVE_030 mnmA; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
C 03050 Proteasome
C 03018 RNA degradation [PATH:tpj03018]
D TPPAVE_027 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D TPPAVE_055 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:tpj03030]
D TPPAVE_122 dnaQ; DNA polymerase iii, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D TPPAVE_058 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D TPPAVE_135 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D TPPAVE_112 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D TPPAVE_136 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
C 03410 Base excision repair
C 03420 Nucleotide excision repair
C 03430 Mismatch repair [PATH:tpj03430]
D TPPAVE_136 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D TPPAVE_058 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D TPPAVE_135 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D TPPAVE_122 dnaQ; DNA polymerase iii, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
C 03440 Homologous recombination [PATH:tpj03440]
D TPPAVE_136 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D TPPAVE_058 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D TPPAVE_135 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D TPPAVE_122 dnaQ; DNA polymerase iii, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters
C 02060 Phosphotransferase system (PTS)
C 03070 Bacterial secretion system
B
B 09132 Signal transduction
C 02020 Two-component system
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:tpj02024]
D TPPAVE_083 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D TPPAVE_082 trpG; glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D TPPAVE_029 aroG; phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
C 02040 Flagellar assembly
D TPPAVE_009 rpoD; RNA polymerase, sigma 70 (sigma D) factor K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance
C 01502 Vancomycin resistance
C 01503 Cationic antimicrobial peptide (CAMP) resistance
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:tpj01000]
C 01001 Protein kinases
C 01009 Protein phosphatases and associated proteins
C 01002 Peptidases and inhibitors [BR:tpj01002]
D TPPAVE_014 clpP; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
C 01003 Glycosyltransferases
C 01005 Lipopolysaccharide biosynthesis proteins
C 01011 Peptidoglycan biosynthesis and degradation proteins
C 01004 Lipid biosynthesis proteins
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:tpj01006]
D TPPAVE_025 miaA; tRNA delta(2)-isopentenylpyrophosphatetransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
C 01007 Amino acid related enzymes [BR:tpj01007]
D TPPAVE_091 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D TPPAVE_129 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D TPPAVE_087 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D TPPAVE_074 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D TPPAVE_099 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D TPPAVE_209 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D TPPAVE_206 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D TPPAVE_133 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D TPPAVE_203 glyQ; glycyl-tRNA synthetase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D TPPAVE_017 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D TPPAVE_127 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D TPPAVE_103 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D TPPAVE_107 pheS; phenylalanyl-tRNA synthetase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D TPPAVE_108 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:tpj03000]
C 03021 Transcription machinery [BR:tpj03021]
D TPPAVE_149 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D TPPAVE_180 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D TPPAVE_179 rpoC; DNA-directed RNA polymerase subunit beta prime K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D TPPAVE_009 rpoD; RNA polymerase, sigma 70 (sigma D) factor K03086 rpoD; RNA polymerase primary sigma factor
D TPPAVE_139 sspB; putative ClpXP protease specificity-enhancing factor K03600 sspB; stringent starvation protein B
C 03019 Messenger RNA biogenesis [BR:tpj03019]
D TPPAVE_027 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D TPPAVE_055 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
C 03041 Spliceosome
C 03011 Ribosome [BR:tpj03011]
D TPPAVE_050 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D TPPAVE_096 rpsB; 30S ribosomal subunit protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D TPPAVE_167 rpsC; 30S ribosomal subunit protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D TPPAVE_150 rpsD; 30S ribosomal subunit protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D TPPAVE_158 rpsE; 30S ribosomal subunit protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D TPPAVE_110 rpsF; 30S ribosomal subunit protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D TPPAVE_177 rpsG; 30S ribosomal subunit protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D TPPAVE_161 rpsH; putative 30S ribosomal subunit protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D TPPAVE_039 rpsI; 30S ribosomal subunit protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D TPPAVE_174 rpsJ; 30S ribosomal subunit protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D TPPAVE_151 rpsK; 30S ribosomal subunit protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D TPPAVE_178 rpsL; 30S ribosomal subunit protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D TPPAVE_152 rpsM; 30S ribosomal subunit protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D TPPAVE_162 rpsN; putative 30S ribosomal subunit protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D TPPAVE_063 rpsO; 30S ribosomal subunit protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D TPPAVE_051 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D TPPAVE_165 rpsQ; 30S ribosomal subunit protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D TPPAVE_111 rpsR; 30S ribosomal subunit protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D TPPAVE_169 rpsS; 30S ribosomal subunit protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D TPPAVE_036 rpsT; 30S ribosomal subunit protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D TPPAVE_010 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D TPPAVE_182 rplA; putative 50S ribosomal subunit protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D TPPAVE_170 rplB; 50S ribosomal subunit protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D TPPAVE_173 rplC; 50S ribosomal subunit protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D TPPAVE_172 rplD; putative 50S ribosomal subunit protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D TPPAVE_163 rplE; putative 50S ribosomal subunit protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D TPPAVE_160 rplF; 50S ribosomal subunit protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D TPPAVE_183 rplK; 50S ribosomal subunit protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D TPPAVE_181 rplLJ; 50S ribosomal subunit proteins L7/L12 and L10 K02935 RP-L7; large subunit ribosomal protein L7/L12
D TPPAVE_038 rplM; 50S ribosomal subunit protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D TPPAVE_164 rplN; 50S ribosomal subunit protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D TPPAVE_156 rplO; 50S ribosomal subunit protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D TPPAVE_166 rplP; 50S ribosomal subunit protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D TPPAVE_159 rplR; 50S ribosomal subunit protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D TPPAVE_052 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D TPPAVE_106 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D TPPAVE_p2 rplU; putative 50S ribosomal subunit protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D TPPAVE_168 rplV; 50S ribosomal subunit protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D TPPAVE_p1 rpmA; putative 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D TPPAVE_157 rpmD; 50S ribosomal subunit protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D TPPAVE_115 rpmE; 50S ribosomal subunit protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D TPPAVE_022 rpmF; 50S ribosomal subunit protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D TPPAVE_072 rpmG; 50S ribosomal subunit protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D TPPAVE_105 rpmI; 50S ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35
D TPPAVE_153 rpmJ; putative 50S ribosomal subunit protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D TPPAVE_200 rplY; 50S ribosomal subunit protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D TPPAVE_064 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D TPPAVE_189 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D TPPAVE_191 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D TPPAVE_190 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:tpj03009]
D TPPAVE_205 rsmA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D TPPAVE_201 rsmD; 16S rRNA m(2)G966-methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D TPPAVE_034 rsmG; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D TPPAVE_065 rsmH; S-adenosyl-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D TPPAVE_117 rlmB; 23S rRNA 2'-O-ribose G2251 methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D TPPAVE_119 rlmE; 23S rRNA 2'-O-ribose U2552 methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D TPPAVE_023 rluC; ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D TPPAVE_132 GTP-binding protein EngA K03977 engA; GTPase
D TPPAVE_059 iojap-like ribosome-associated protein K09710 ybeB; ribosome-associated protein
C 03016 Transfer RNA biogenesis [BR:tpj03016]
D TPPAVE_091 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D TPPAVE_127 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D TPPAVE_074 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D TPPAVE_209 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D TPPAVE_129 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D TPPAVE_206 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D TPPAVE_103 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D TPPAVE_017 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D TPPAVE_087 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D TPPAVE_099 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D TPPAVE_133 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D TPPAVE_107 pheS; phenylalanyl-tRNA synthetase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D TPPAVE_108 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D TPPAVE_066 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D TPPAVE_025 miaA; tRNA delta(2)-isopentenylpyrophosphatetransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D TPPAVE_033 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D TPPAVE_203 glyQ; glycyl-tRNA synthetase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D TPPAVE_100 tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D TPPAVE_030 mnmA; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D TPPAVE_088 tilS; tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
C 03012 Translation factors [BR:tpj03012]
D TPPAVE_109 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D TPPAVE_104 infC; translation initiation factor K02520 infC; translation initiation factor IF-3
D TPPAVE_175 tufA; elongation factor Tu K02358 tuf; elongation factor Tu
D TPPAVE_176 fusA; elongation factor G K02355 fusA; elongation factor G
D TPPAVE_079 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D TPPAVE_097 frr; ribosome recycling factor K02838 frr; ribosome recycling factor
D TPPAVE_154 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D TPPAVE_069 prfB; Peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
C 03110 Chaperones and folding catalysts [BR:tpj03110]
D TPPAVE_013 clpX; ATP-dependent protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D TPPAVE_027 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D TPPAVE_055 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D TPPAVE_026 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D TPPAVE_028 grpE; putative GrpE protein K03687 GRPE; molecular chaperone GrpE
D TPPAVE_056 groS; putative co-chaperonin GroES K04078 groES; chaperonin GroES
C 04131 Membrane trafficking [BR:tpj04131]
D TPPAVE_134 ndk; putative nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
C 04121 Ubiquitin system
C 03051 Proteasome
C 03032 DNA replication proteins [BR:tpj03032]
D TPPAVE_112 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D TPPAVE_136 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D TPPAVE_058 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D TPPAVE_122 dnaQ; DNA polymerase iii, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D TPPAVE_135 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
C 03036 Chromosome and associated proteins [BR:tpj03036]
D TPPAVE_033 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D TPPAVE_034 rsmG; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
C 03400 DNA repair and recombination proteins [BR:tpj03400]
D TPPAVE_180 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D TPPAVE_179 rpoC; DNA-directed RNA polymerase subunit beta prime K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D TPPAVE_149 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D TPPAVE_058 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D TPPAVE_122 dnaQ; DNA polymerase iii, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D TPPAVE_135 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D TPPAVE_136 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
C 03029 Mitochondrial biogenesis [BR:tpj03029]
D TPPAVE_109 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D TPPAVE_104 infC; translation initiation factor K02520 infC; translation initiation factor IF-3
D TPPAVE_175 tufA; elongation factor Tu K02358 tuf; elongation factor Tu
D TPPAVE_176 fusA; elongation factor G K02355 fusA; elongation factor G
D TPPAVE_209 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D TPPAVE_206 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D TPPAVE_193 gatA; glutamyl-tRNA(Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D TPPAVE_192 gatB; glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D TPPAVE_136 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D TPPAVE_027 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D TPPAVE_028 grpE; putative GrpE protein K03687 GRPE; molecular chaperone GrpE
D TPPAVE_055 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D TPPAVE_056 groS; putative co-chaperonin GroES K04078 groES; chaperonin GroES
D TPPAVE_026 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D TPPAVE_066 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:tpj02000]
C 02044 Secretion system
C 02042 Bacterial toxins
C 02022 Two-component system
C 02035 Bacterial motility proteins
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins
C 04147 Exosome [BR:tpj04147]
D TPPAVE_055 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D TPPAVE_027 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D TPPAVE_175 tufA; elongation factor Tu K02358 tuf; elongation factor Tu
D TPPAVE_116 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D TPPAVE_015 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
C 02048 Prokaryotic defense system [BR:tpj02048]
D TPPAVE_091 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D TPPAVE_066 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:tpj03100]
D TPPAVE_085 trnA; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D TPPAVE_130 trnR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D TPPAVE_044 trnR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D TPPAVE_024 trnN; tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D TPPAVE_093 trnD; tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D TPPAVE_020 trnC; tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D TPPAVE_198 trnQ; tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D TPPAVE_092 trnE; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D TPPAVE_186 trnG; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D TPPAVE_021 trnG; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D TPPAVE_118 trnH; tRNA-His K14226 tRNA-His; tRNA His
D TPPAVE_084 trnI; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D TPPAVE_123 trnL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D TPPAVE_042 trnL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D TPPAVE_137 trnK; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D TPPAVE_057 trnK; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D TPPAVE_008 trnM; tRNA-Met K14230 tRNA-Met; tRNA Met
D TPPAVE_075 trnM; tRNA-Met K14230 tRNA-Met; tRNA Met
D TPPAVE_128 trnM; tRNA-Met K14230 tRNA-Met; tRNA Met
D TPPAVE_195 trnF; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D TPPAVE_131 trnP; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D TPPAVE_016 trnS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D TPPAVE_043 trnS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D TPPAVE_086 trnS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D TPPAVE_090 trnS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D TPPAVE_138 trnT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D TPPAVE_185 trnT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D TPPAVE_032 trnT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D TPPAVE_184 trnW; tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D TPPAVE_187 trnY; tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D TPPAVE_102 trnV; tRNA-Val K14237 tRNA-Val; tRNA Val
D TPPAVE_191 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D TPPAVE_190 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D TPPAVE_064 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D TPPAVE_189 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D TPPAVE_045 ssrA; predicted with Rfam scan K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D TPPAVE_124 ahpC; hydroperoxide reductase K24126 ahpC; lipoyl-dependent peroxiredoxin subunit C [EC:1.11.1.28]
D TPPAVE_197 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
C 99981 Carbohydrate metabolism
C 99982 Energy metabolism
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
C 99986 Glycan metabolism
C 99987 Cofactor metabolism
C 99988 Secondary metabolism
C 99999 Others
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D TPPAVE_071 cspD; cold shock transcription regulator protein K03704 cspA; cold shock protein
C 99974 Translation
C 99975 Protein processing
D TPPAVE_098 smpB; trans-translation protein K03664 smpB; SsrA-binding protein
C 99976 Replication and repair
C 99979 Viral proteins
C 99998 Others
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
C 99978 Cell growth
C 99993 Cell motility
C 99995 Signaling proteins
C 99992 Structural proteins
C 99994 Others
B
B 09194 Poorly characterized
C 99996 General function prediction only
D TPPAVE_040 hesB; HesB/YadR/YfhF family protein K15724 erpA; iron-sulfur cluster insertion protein
C 99997 Function unknown
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 22, 2024