+F Repair protein KO #

  DNA Repair and Recombination Proteins - Treponema pallidum subsp. pertenue SamoaD

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D TPESAMD_0141 ada; methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E TPESAMD_0343 mutY; putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E TPESAMD_0775 nth; DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E TPESAMD_0380 putative DNA repair helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D TPESAMD_0885 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D TPESAMD_0141 ada; methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E TPESAMD_0229 udg; uracil DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E TPESAMD_0343 mutY; putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E TPESAMD_0775 nth; DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E TPESAMD_0125 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E TPESAMD_0704 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E TPESAMD_0634 lig; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E TPESAMD_0514 uvrA; excision endonuclease subunit UvrA K03701 uvrA; excinuclease ABC subunit A E TPESAMD_0116 uvrB; excision endonuclease subunit UvrB K03702 uvrB; excinuclease ABC subunit B E TPESAMD_0472 uvrC; excision endonuclease subunit UvrC K03703 uvrC; excinuclease ABC subunit C E TPESAMD_1028 uvrD; excision endonuclease subunit UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TPESAMD_0102 UvrD/REP family ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TPESAMD_0634 lig; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F TPESAMD_0241 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F TPESAMD_0242 rpoC; DNA-directed RNA polymerase subunit beta prime K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F TPESAMD_0212 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F TPESAMD_0701 rpoZ; putative DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F TPESAMD_0344 trcF; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E TPESAMD_0328 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E TPESAMD_0303 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme E TPESAMD_0669 dnaE; DNA-directed DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E TPESAMD_0002 dnaN; DNA-directed DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E TPESAMD_0587 holA; DNA-directed DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E TPESAMD_0643 dnaQ; DNA-directed DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E TPESAMD_1005 dnaZX2; DNA-directed DNA polymerase III gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E TPESAMD_0521 dnaZX1; DNA-directed DNA polymerase III gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E TPESAMD_0634 lig; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E TPESAMD_1028 uvrD; excision endonuclease subunit UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TPESAMD_0102 UvrD/REP family ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TPESAMD_0062 ssb1; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein E TPESAMD_0310 ssb2; putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E TPESAMD_0810 dam; site-specific DNA-methyltransferase (adenine-specific) K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E TPESAMD_0692 recA; recombination protein A K03553 recA; recombination protein RecA E TPESAMD_0543 ruvA; crossover junction endoribonuclease subunit A K03550 ruvA; holliday junction DNA helicase RuvA E TPESAMD_0162 ruvB; crossover junction endoribonuclease subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E TPESAMD_0517 ruvC; crossover junction endoribonuclease subunit C K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E TPESAMD_0230 priA; DNA replication factor Y K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E TPESAMD_0627 sbcC; exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E TPESAMD_0626 sbcD; exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E TPESAMD_0692 recA; recombination protein A K03553 recA; recombination protein RecA E TPESAMD_1022 sms; DNA repair protein Sms K04485 radA; DNA repair protein RadA/Sms E TPESAMD_0003 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF E TPESAMD_0687 recG; DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E TPESAMD_0704 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E TPESAMD_1004 recR; recombination protein R K06187 recR; recombination protein RecR E TPESAMD_0442 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E TPESAMD_0543 ruvA; crossover junction endoribonuclease subunit A K03550 ruvA; holliday junction DNA helicase RuvA E TPESAMD_0162 ruvB; crossover junction endoribonuclease subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E TPESAMD_0517 ruvC; crossover junction endoribonuclease subunit C K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E TPESAMD_0627 sbcC; exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E TPESAMD_0626 sbcD; exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F TPESAMD_0005 gyrA; cDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F TPESAMD_1006 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F TPESAMD_0394 topA; DNA topoisomerase TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F TPESAMD_0704 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F TPESAMD_1004 recR; recombination protein R K06187 recR; recombination protein RecR F TPESAMD_0634 lig; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F TPESAMD_0251 bacterial DNA-binding factor K04764 ihfA; integration host factor subunit alpha E Supressor F TPESAMD_0103 recQ; ATP-dependent helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F TPESAMD_0514 uvrA; excision endonuclease subunit UvrA K03701 uvrA; excinuclease ABC subunit A F TPESAMD_0116 uvrB; excision endonuclease subunit UvrB K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors D TPESAMD_0692 recA; recombination protein A K03553 recA; recombination protein RecA D TPESAMD_0442 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D TPESAMD_0062 ssb1; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D TPESAMD_0310 ssb2; putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D TPESAMD_1023 recX; recombination regulator RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D TPESAMD_0885 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D TPESAMD_1008 nrdA; ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TPESAMD_0053 nrdB; ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D TPESAMD_0436 DHH superfamily phosphoesterase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024