+D GENES KO #

  KEGG Orthology (KO) - Treponema pallidum subsp. pallidum SS14

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A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:tpp00010] D TPASS_0505 hxk; hexokinase K00844 HK; hexokinase [EC:2.7.1.1] D TPASS_0475 gpi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D TPASS_0108 pfk; pyrophosphate--fructose 6-phosphate 1-phosphotransferase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D TPASS_0542 pyrophosphate--fructose 6-phosphate 1-phosphotransferase, beta subunit K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90] D TPASS_0662 cbbA; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D TPASS_0537 tpi; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D TPASS_0844 gap; glyceraldehyde 3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D TPASS_0538 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D TPASS_0168 pgm; phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D TPASS_0817 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D TPASS_0746 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D TPASS_0939 pyruvate oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D TPASS_0642 manB; phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D TPASS_0122 pckA; phosphoenolpyruvate carboxykinase K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] C 00020 Citrate cycle (TCA cycle) [PATH:tpp00020] D TPASS_0122 pckA; phosphoenolpyruvate carboxykinase K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D TPASS_0939 pyruvate oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] C 00030 Pentose phosphate pathway [PATH:tpp00030] D TPASS_0475 gpi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D TPASS_0478 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D TPASS_0477 possible glucose-6-phosphate 1-dehydrogenase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31] D TPASS_0331 gnd; phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D TPASS_0945 cfxE; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D TPASS_0560 tktA; transketolase A K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D TPASS_0616 rpiA; ribose 5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D TPASS_0264 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D TPASS_0642 manB; phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D TPASS_0294 prs; phosphoribosyl pyrophosphate synthetase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D TPASS_0568 eda; 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxyphosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D TPASS_0662 cbbA; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D TPASS_0108 pfk; pyrophosphate--fructose 6-phosphate 1-phosphotransferase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D TPASS_0542 pyrophosphate--fructose 6-phosphate 1-phosphotransferase, beta subunit K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90] C 00040 Pentose and glucuronate interconversions D TPASS_0945 cfxE; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] C 00051 Fructose and mannose metabolism [PATH:tpp00051] D TPASS_0505 hxk; hexokinase K00844 HK; hexokinase [EC:2.7.1.1] D TPASS_0108 pfk; pyrophosphate--fructose 6-phosphate 1-phosphotransferase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D TPASS_0542 pyrophosphate--fructose 6-phosphate 1-phosphotransferase, beta subunit K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90] D TPASS_0662 cbbA; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D TPASS_0537 tpi; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 00052 Galactose metabolism [PATH:tpp00052] D TPASS_0418 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D TPASS_0642 manB; phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D TPASS_0505 hxk; hexokinase K00844 HK; hexokinase [EC:2.7.1.1] D TPASS_0108 pfk; pyrophosphate--fructose 6-phosphate 1-phosphotransferase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C 00053 Ascorbate and aldarate metabolism C 00500 Starch and sucrose metabolism [PATH:tpp00500] D TPASS_0358 hypothetical protein K16149 K16149; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D TPASS_0642 manB; phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D TPASS_0505 hxk; hexokinase K00844 HK; hexokinase [EC:2.7.1.1] D TPASS_0475 gpi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:tpp00520] D TPASS_0505 hxk; hexokinase K00844 HK; hexokinase [EC:2.7.1.1] D TPASS_0861 glmS; glucosamine-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D TPASS_0029 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D TPASS_0090 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D TPASS_0642 manB; phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D TPASS_0418 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D TPASS_0475 gpi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] C 00620 Pyruvate metabolism [PATH:tpp00620] D TPASS_0939 pyruvate oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D TPASS_0476 ack; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D TPASS_0094 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D TPASS_0037 D-specific D-2-hydroxyacid dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28] D TPASS_0056 oadA; oxaloacetate decarboxylase, subunit alpha K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D TPASS_0057 oadB; oxaloacetate decarboxylase, subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D TPASS_0055 hypothetical protein K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma D TPASS_0122 pckA; phosphoenolpyruvate carboxykinase K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D TPASS_0746 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:tpp00630] D TPASS_0554 gph2; phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D TPASS_0329 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D TPASS_0568 eda; 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxyphosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] C 00640 Propanoate metabolism [PATH:tpp00640] D TPASS_0476 ack; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D TPASS_0094 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] C 00650 Butanoate metabolism [PATH:tpp00650] D TPASS_0057 oadB; oxaloacetate decarboxylase, subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D TPASS_0939 pyruvate oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] C 00660 C5-Branched dibasic acid metabolism C 00562 Inositol phosphate metabolism D TPASS_0537 tpi; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:tpp00190] D TPASS_0426 atpA1; V-type ATPase, subunit A K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1] D TPASS_0529 atpA2; V-type ATPase, subunit A K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1] D TPASS_0427 atpB1; V-type ATPase, subunit B K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B D TPASS_0528 atpB2; V-type ATPase, subunit B K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B D TPASS_0428 atpD1; V-type ATPase, subunit D K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D D TPASS_0527 atpD2; V-type ATPase, subunit D K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D D TPASS_0424 possible V-type ATPase, subunit E K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E D TPASS_0530 possible V-type ATPase, subunit E K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E D TPASS_0429 atpI1; V-type ATPase, subunit I K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I D TPASS_0533 atpI2; V-type ATPase, subunit I K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I D TPASS_0430 atpK1; V-type ATPase, subunit K K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms [PATH:tpp00710] D TPASS_0538 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D TPASS_0844 gap; glyceraldehyde 3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D TPASS_0662 cbbA; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D TPASS_0560 tktA; transketolase A K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D TPASS_0616 rpiA; ribose 5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D TPASS_0537 tpi; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D TPASS_0945 cfxE; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D TPASS_0746 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] C 00720 Carbon fixation pathways in prokaryotes [PATH:tpp00720] D TPASS_0939 pyruvate oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D TPASS_0746 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D TPASS_0732 folD; methylenetetrahydrofolate dehydrogenase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D TPASS_0094 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D TPASS_0476 ack; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00680 Methane metabolism [PATH:tpp00680] D TPASS_0329 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D TPASS_0817 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D TPASS_0662 cbbA; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D TPASS_0108 pfk; pyrophosphate--fructose 6-phosphate 1-phosphotransferase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D TPASS_0476 ack; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D TPASS_0094 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D TPASS_0168 pgm; phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] C 00910 Nitrogen metabolism D TPASS_0735 gltA; glutamate synthase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] C 00920 Sulfur metabolism D TPASS_0436 hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:tpp00061] D TPASS_0808 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D TPASS_0145 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation D TPASS_0145 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism D TPASS_0361 possible lysophosphatidic acid acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 00564 Glycerophospholipid metabolism [PATH:tpp00564] D TPASS_1009 gpsA; glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D TPASS_0361 possible lysophosphatidic acid acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D TPASS_0257 glpQ; glycerophosphoryldiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D TPASS_0602 cdsA; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D TPASS_0256 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D TPASS_0730 hypothetical protein K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:tpp00230] D TPASS_0642 manB; phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D TPASS_0294 prs; phosphoribosyl pyrophosphate synthetase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D TPASS_1039 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D TPASS_0104 ushA; 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D TPASS_0419 possible survival protein K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D TPASS_0734 deoD; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D TPASS_1010 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D TPASS_0438 hypothetical protein K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D TPASS_0079 hypothetical protein K13482 xdhB; xanthine dehydrogenase large subunit [EC:1.17.1.4] D TPASS_1008 nrdA; ribonucleoside-diphosphate reductase, subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TPASS_0053 nrdB; ribonucleoside-diphosphate reductase, subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D TPASS_0485 adenylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D TPASS_0595 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00240 Pyrimidine metabolism [PATH:tpp00240] D TPASS_0099 smbA; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D TPASS_1010 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D TPASS_0305 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D TPASS_0342 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D TPASS_0667 udk; uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48] D TPASS_0104 ushA; 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D TPASS_0419 possible survival protein K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D TPASS_1027 udp; uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3] D TPASS_0448 possible uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D TPASS_1008 nrdA; ribonucleoside-diphosphate reductase, subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TPASS_0053 nrdB; ribonucleoside-diphosphate reductase, subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D TPASS_0274 possible deoxycytidylate deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12] D TPASS_0354 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D TPASS_0885 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D TPASS_1007 thyX; thymidylate synthase-complementing protein K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:tpp00250] D TPASS_0223 aspartate aminotransferase TpAAT K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D TPASS_0556 asnA; asparagine synthetase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] D TPASS_0735 gltA; glutamate synthase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D TPASS_0861 glmS; glucosamine-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] C 00260 Glycine, serine and threonine metabolism [PATH:tpp00260] D TPASS_0329 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D TPASS_0168 pgm; phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] C 00270 Cysteine and methionine metabolism [PATH:tpp00270] D TPASS_0794 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D TPASS_0170 pfs; protein Pfs K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D TPASS_0223 aspartate aminotransferase TpAAT K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00280 Valine, leucine and isoleucine degradation C 00290 Valine, leucine and isoleucine biosynthesis C 00300 Lysine biosynthesis [PATH:tpp00300] D TPASS_0933 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D TPASS_0386 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation D TPASS_0121 hypothetical protein K01843 kamA; lysine 2,3-aminomutase [EC:5.4.3.2] C 00220 Arginine biosynthesis D TPASS_0223 aspartate aminotransferase TpAAT K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00330 Arginine and proline metabolism [PATH:tpp00330] D TPASS_0797 proC; 1-pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D TPASS_0351 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D TPASS_0350 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D TPASS_0223 aspartate aminotransferase TpAAT K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism C 00350 Tyrosine metabolism D TPASS_0223 aspartate aminotransferase TpAAT K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00360 Phenylalanine metabolism D TPASS_0223 aspartate aminotransferase TpAAT K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00380 Tryptophan metabolism C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:tpp00400] D TPASS_0223 aspartate aminotransferase TpAAT K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism C 00430 Taurine and hypotaurine metabolism [PATH:tpp00430] D TPASS_0094 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D TPASS_0476 ack; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism C 00450 Selenocompound metabolism [PATH:tpp00450] D TPASS_0614 nifS1; nitrogen fixation protein K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D TPASS_0814 trxB; thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D TPASS_0798 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:tpp00460] D TPASS_0556 asnA; asparagine synthetase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] D TPASS_0329 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:tpp00470] D TPASS_0681 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D TPASS_0670 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D TPASS_0406 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D TPASS_0903 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] C 00480 Glutathione metabolism [PATH:tpp00480] D TPASS_0331 gnd; phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D TPASS_0478 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis C 00550 Peptidoglycan biosynthesis [PATH:tpp00550] D TPASS_0029 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D TPASS_0090 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D TPASS_0341 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D TPASS_0903 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D TPASS_0933 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D TPASS_0670 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D TPASS_0386 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D TPASS_0603 hypothetical protein K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D TPASS_0345 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D TPASS_0523 murG; UDP-N-glucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D TPASS_0705 pbp2; penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D TPASS_0500 pbp1; penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D TPASS_0760 pbp3; penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D TPASS_0800 dacC; serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D TPASS_0221 possible D,D-carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] C 00552 Teichoic acid biosynthesis [PATH:tpp00552] D TPASS_0275 possible UDP-N-acetyl-D-mannosamine transferase K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:tpp00543] D TPASS_0566 algI; alginate O-acetylation protein K19294 algI; alginate O-acetyltransferase complex protein AlgI B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:tpp00730] D TPASS_0863 nifS2; nitrogen fixation protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D TPASS_0559 hypothetical protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D TPASS_0824 dxs; deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D TPASS_0518 hypothetical protein K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2] D TPASS_0595 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:tpp00740] D TPASS_0888 ribF; riboflavin kinase/FMN adenylyltransferase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] C 00750 Vitamin B6 metabolism [PATH:tpp00750] D TPASS_0115 thiD; phosphomethypyrimidine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35] C 00760 Nicotinate and nicotinamide metabolism [PATH:tpp00760] D TPASS_0628 hypothetical protein K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D TPASS_0734 deoD; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D TPASS_0104 ushA; 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D TPASS_0419 possible survival protein K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D TPASS_0741 hypothetical protein K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D TPASS_0780 nadE; NH(3)-dependent NAD(+) synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] D TPASS_0441 hypothetical protein K00858 ppnK; NAD+ kinase [EC:2.7.1.23] C 00770 Pantothenate and CoA biosynthesis [PATH:tpp00770] D TPASS_0431 hypothetical protein K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D TPASS_0283 kdtB; lipopolysaccharide core biosynthesis protein K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D TPASS_0296 hypothetical protein K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D TPASS_0828 acpS; holo-acyl-carrier protein synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] C 00780 Biotin metabolism [PATH:tpp00780] D TPASS_0357 birA; biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism C 00790 Folate biosynthesis [PATH:tpp00790] D TPASS_0340 folC; folylpolyglutamate synthetase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] C 00670 One carbon pool by folate [PATH:tpp00670] D TPASS_0732 folD; methylenetetrahydrofolate dehydrogenase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D TPASS_0329 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D TPASS_0756 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D TPASS_1007 thyX; thymidylate synthase-complementing protein K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D TPASS_0694 possible 5,10-methenyltetrahydrofolate synthetase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism D TPASS_0673 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:tpp00900] D TPASS_0824 dxs; deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D TPASS_0601 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D TPASS_0512 hypothetical protein K12506 ispDF; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12] D TPASS_0371 hypothetical protein K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D TPASS_0446 gcpE; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D TPASS_0547 lytB; penicillin tolerance protein K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D TPASS_0683 octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D TPASS_0603 hypothetical protein K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation [PATH:tpp00903] D TPASS_0935 possible N-acetylphosphinothricin-tripetide-deacetylase K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83] C 00907 Pinene, camphor and geraniol degradation C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D TPASS_0560 tktA; transketolase A K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis [PATH:tpp00332] D TPASS_0351 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D TPASS_0350 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:tpp00521] D TPASS_0505 hxk; hexokinase K00844 HK; hexokinase [EC:2.7.1.1] D TPASS_0642 manB; phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D TPASS_0505 hxk; hexokinase K00844 HK; hexokinase [EC:2.7.1.1] C 00525 Acarbose and validamycin biosynthesis C 00401 Novobiocin biosynthesis D TPASS_0223 aspartate aminotransferase TpAAT K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis C 00333 Prodigiosin biosynthesis C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D TPASS_0808 acpP; acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites D TPASS_0794 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation D TPASS_0057 oadB; oxaloacetate decarboxylase, subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] C 00627 Aminobenzoate degradation C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation C 00361 Chlorocyclohexane and chlorobenzene degradation C 00623 Toluene degradation C 00622 Xylene degradation C 00633 Nitrotoluene degradation C 00642 Ethylbenzene degradation C 00643 Styrene degradation C 00791 Atrazine degradation C 00930 Caprolactam degradation D TPASS_0935 possible N-acetylphosphinothricin-tripetide-deacetylase K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83] C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:tpp03020] D TPASS_0241 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D TPASS_0242 rpoC; DNA-directed RNA polymerase, beta subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D TPASS_0212 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D TPASS_0701 possible DNA-directed RNA polymerase K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors D TPASS_0380 possible DNA repair helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:tpp03010] D TPASS_0279 rpsA; ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D TPASS_0606 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D TPASS_0195 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D TPASS_0306 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D TPASS_0206a rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D TPASS_0063 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D TPASS_0244 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D TPASS_0203 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D TPASS_1024 rpsI; ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D TPASS_0188 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D TPASS_0211 rpsK; ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D TPASS_0243 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D TPASS_0210 rpsM; ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D TPASS_0202 rpsN; ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D TPASS_0887 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D TPASS_0905 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D TPASS_0198 rpsQ; ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D TPASS_0061 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D TPASS_0193 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D TPASS_0250b rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D TPASS_0758 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D TPASS_0238 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D TPASS_0192 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D TPASS_0189 rplC; ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D TPASS_0190 rplD; ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D TPASS_0201 rplE; ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D TPASS_0204 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D TPASS_0240 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D TPASS_0060 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D TPASS_0239 rplJ; ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D TPASS_0237 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D TPASS_1025 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D TPASS_0199 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D TPASS_0207 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D TPASS_0196 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D TPASS_0213 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D TPASS_0205 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D TPASS_0909 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D TPASS_0848 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D TPASS_0745 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D TPASS_0194 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D TPASS_0191 rplW; ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D TPASS_0200 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D TPASS_0372 ctc; general stress protein K02897 RP-L25; large subunit ribosomal protein L25 D TPASS_0743 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D TPASS_0362 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D TPASS_0197 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D TPASS_0206b rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D TPASS_0255 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D TPASS_0807 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D TPASS_0234 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D TPASS_0951 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D TPASS_0849 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D TPASS_0209 rpmJ1; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D TPASS_r0004 rrs2; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TPASS_r0001 rrs1; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TPASS_r0002 rrl1; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D TPASS_r0005 rrl2; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D TPASS_r0006 rrf2; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D TPASS_r0003 rrf1; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:tpp00970] D TPASS_t0045 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D TPASS_t0041 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D TPASS_t0015 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D TPASS_t0030 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TPASS_t0003 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TPASS_t0031 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TPASS_t0026 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TPASS_t0035 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TPASS_t0024 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D TPASS_t0028 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D TPASS_t0025 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D TPASS_t0006 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D TPASS_t0018 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D TPASS_t0007 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D TPASS_t0008 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D TPASS_t0023 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D TPASS_t0017 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D TPASS_t0032 tRNA-His K14226 tRNA-His; tRNA His D TPASS_t0012 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D TPASS_t0022 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TPASS_t0010 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TPASS_t0044 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TPASS_t0040 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TPASS_t0016 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TPASS_t0039 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D TPASS_t0021 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D TPASS_t0037 tRNA-Met K14230 tRNA-Met; tRNA Met D TPASS_t0011 tRNA-Met K14230 tRNA-Met; tRNA Met D TPASS_t0029 tRNA-Met K14230 tRNA-Met; tRNA Met D TPASS_t0033 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D TPASS_t0034 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D TPASS_t0038 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D TPASS_t0027 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D TPASS_t0004 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TPASS_t0001 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TPASS_t0002 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TPASS_t0005 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TPASS_t0013 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D TPASS_t0042 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D TPASS_t0019 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D TPASS_t0014 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D TPASS_t0020 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D TPASS_t0036 tRNA-Val K14237 tRNA-Val; tRNA Val D TPASS_t0043 tRNA-Val K14237 tRNA-Val; tRNA Val D TPASS_t0009 tRNA-Val K14237 tRNA-Val; tRNA Val D TPASS_0673 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D TPASS_1020 gatA; glu-tRNA amidotransferase, subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D TPASS_1021 gatB; glu-tRNA amidotransferase, subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D TPASS_1017 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D TPASS_0985 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D TPASS_0609 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D TPASS_0672 glyS; glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D TPASS_0837 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D TPASS_0647 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D TPASS_0091 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D TPASS_0798 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D TPASS_0756 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D TPASS_1035 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D TPASS_0586 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D TPASS_0452 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D TPASS_0644 lysS1; lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D TPASS_0831 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D TPASS_0160 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D TPASS_0641 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D TPASS_0973 pheS; phenylalanyl-tRNA synthetase, subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D TPASS_0015 pheT; phenylalanyl-tRNA synthetase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D TPASS_0834 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D TPASS_0632 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:tpp03060] D TPASS_0208 secY; preprotein translocase subunit K03076 secY; preprotein translocase subunit SecY D TPASS_0235 secE; preprotein translocase subunit K03073 secE; preprotein translocase subunit SecE D TPASS_0536 hypothetical protein K03075 secG; preprotein translocase subunit SecG D TPASS_0410 secD; protein-export membrane protein K03072 secD; preprotein translocase subunit SecD D TPASS_0411 secF; protein-export membrane protein K03074 secF; preprotein translocase subunit SecF D TPASS_0949 membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D TPASS_0379 secA; preprotein translocase subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D TPASS_0416 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D TPASS_0578 ftsY; cell division protein K03110 ftsY; fused signal recognition particle receptor D TPASS_0926 possible signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D TPASS_0185 sip; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D TPASS_0978 lsp; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:tpp04122] D TPASS_0863 nifS2; nitrogen fixation protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D TPASS_0559 hypothetical protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] C 03050 Proteasome C 03018 RNA degradation [PATH:tpp03018] D TPASS_0817 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D TPASS_0886 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D TPASS_0770 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D TPASS_0103 possible ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D TPASS_0254 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D TPASS_1018 hypothetical protein K18682 rny; ribonucrease Y [EC:3.1.-.-] D TPASS_0108 pfk; pyrophosphate--fructose 6-phosphate 1-phosphotransferase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D TPASS_0216 dnaK; heat shock protein 70 K04043 dnaK; molecular chaperone DnaK D TPASS_0030 groEL; heat shock protein GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D TPASS_0596 pcnB; polynucleotide adenylyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:tpp03030] D TPASS_0643 dnaQ; DNA polymerase III, subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TPASS_0669 dnaE; DNA polymerase III, subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D TPASS_1005 dnaZX; DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TPASS_0521 possible DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TPASS_0588 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D TPASS_0002 dnaN; DNA-directed DNA polymerase beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D TPASS_0058 dnaB; replicative DNA helicase DnaB K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D TPASS_0492 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D TPASS_0062 ssb; single-strand DNA binding protein Ssb K03111 ssb; single-strand DNA-binding protein D TPASS_0310 hypothetical protein K03111 ssb; single-strand DNA-binding protein D TPASS_0353 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D TPASS_0634 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:tpp03410] D TPASS_0775 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D TPASS_0343 possible A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D TPASS_0229 DNA polymerase, bacteriophage-type K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D TPASS_0125 exoA; exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D TPASS_0704 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D TPASS_0634 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:tpp03420] D TPASS_0344 trcF; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D TPASS_0514 uvrA; excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A D TPASS_0116 uvrB; excinuclease ABC, subunit B K03702 uvrB; excinuclease ABC subunit B D TPASS_0472 uvrC; excinuclease ABC, subunit C K03703 uvrC; excinuclease ABC subunit C D TPASS_1028 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TPASS_0102 rep; Rep helicase, single-stranded DNA-dependent ATPase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TPASS_0634 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TPASS_0380 possible DNA repair helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] C 03430 Mismatch repair [PATH:tpp03430] D TPASS_0328 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D TPASS_0303 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D TPASS_1028 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TPASS_0102 rep; Rep helicase, single-stranded DNA-dependent ATPase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TPASS_0704 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D TPASS_0062 ssb; single-strand DNA binding protein Ssb K03111 ssb; single-strand DNA-binding protein D TPASS_0310 hypothetical protein K03111 ssb; single-strand DNA-binding protein D TPASS_0669 dnaE; DNA polymerase III, subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D TPASS_0002 dnaN; DNA-directed DNA polymerase beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D TPASS_1005 dnaZX; DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TPASS_0521 possible DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TPASS_0588 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D TPASS_0643 dnaQ; DNA polymerase III, subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TPASS_0634 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TPASS_0810 dam; DNA adenine methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] C 03440 Homologous recombination [PATH:tpp03440] D TPASS_0704 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D TPASS_0062 ssb; single-strand DNA binding protein Ssb K03111 ssb; single-strand DNA-binding protein D TPASS_0310 hypothetical protein K03111 ssb; single-strand DNA-binding protein D TPASS_0003 recF; recombination protein RecF K03629 recF; DNA replication and repair protein RecF D TPASS_1004 recR; recombination protein RecR K06187 recR; recombination protein RecR D TPASS_0692 recA; protein RecA K03553 recA; recombination protein RecA D TPASS_0543 ruvA; Holliday junction DNA helicase, subunit A K03550 ruvA; holliday junction DNA helicase RuvA D TPASS_0162 ruvB; Holliday junction DNA helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D TPASS_0517 ruvC; Holliday junction nuclease, subunit C K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D TPASS_0687 recG; DNA recombinase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D TPASS_0669 dnaE; DNA polymerase III, subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D TPASS_0002 dnaN; DNA-directed DNA polymerase beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D TPASS_1005 dnaZX; DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TPASS_0521 possible DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TPASS_0588 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D TPASS_0643 dnaQ; DNA polymerase III, subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TPASS_0230 priA; primosomal protein N K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:tpp02010] D TPASS_0144 possible thiamine ABC transporter, thiamine-binding periplasmic protein K02064 thiB; thiamine transport system substrate-binding protein D TPASS_0143 possible thiamine ABC transporter, permease protein K02063 thiP; thiamine transport system permease protein D TPASS_0142 possible thiamine ABC transporter, ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D TPASS_0655 potD; spermidine/putrescine ABC transporter, periplasmic binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D TPASS_0654 potC; spermidine/putrescine ABC transporter, permease protein K11070 potC; spermidine/putrescine transport system permease protein D TPASS_0653 potB; spermidine/putrescine ABC transporter, permease protein K11071 potB; spermidine/putrescine transport system permease protein D TPASS_0652 potA; spermidine/putrescine ABC transporter, ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D TPASS_0804 ugpC; sugar ABC transporter, ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D TPASS_0319 tmpC; membrane lipoprotein TmpC K07335 bmpA; basic membrane protein A and related proteins D TPASS_0322 rbsC1; ribose/galactose ABC transporter, permease protein K23535 nupB; general nucleoside transport system permease protein D TPASS_0323 rbsC2; ribose/galactose ABC transporter, permease protein K23536 nupC; general nucleoside transport system permease protein D TPASS_0321 rbsA2; ribose/galactose ABC transporter, ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D TPASS_0545 mglB1; methylgalactoside ABC transporter, periplasmic galactose-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein D TPASS_0684 mglB2; methylgalactoside ABC transporter, periplasmic galactose-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein D TPASS_0686 mglC; methylgalactoside ABC transporter, permease protein K10541 mglC; methyl-galactoside transport system permease protein D TPASS_0685 mglA; methylgalactoside ABC transporter, ATP binding protein K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11] D TPASS_0821 tpn32; lipoprotein Tpn32 K02073 metQ; D-methionine transport system substrate-binding protein D TPASS_0119 yaeE; amino acid ABC transporter, permease protein K02072 metI; D-methionine transport system permease protein D TPASS_0120 amino acid ABC transporter, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D TPASS_0034 ABC transporter, periplasmic binding protein K09815 znuA; zinc transport system substrate-binding protein D TPASS_0036 ABC transporter, permease protein K09816 znuB; zinc transport system permease protein D TPASS_0035 ABC transporter, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D TPASS_0163 troA; ABC transporter, periplasmic binding protein K11707 troA; manganese/zinc/iron transport system substrate-binding protein D TPASS_0165 troC; ABC transporter, permease protein K11708 troC; manganese/zinc/iron transport system permease protein D TPASS_0166 troD; ABC transporter, permease protein K11709 troD; manganese/zinc/iron transport system permease protein D TPASS_0164 troB; ABC transporter, ATP-binding protein K11710 troB; manganese/zinc/iron transport system ATP- binding protein [EC:7.2.2.5] D TPASS_0228 possible biotin synthase K03523 bioY; biotin transport system substrate-specific component D TPASS_0226 hypothetical protein K16783 bioN; biotin transport system permease protein D TPASS_0227 cobalt ABC transporter, ATP-binding protein K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-] D TPASS_0298 tpn38b; exported protein TpN38b K23510 rfuA; riboflavin transport system substrate-binding protein D TPASS_0301 hypothetical integral membrane protein K23511 rfuC; riboflavin transport system permease protein D TPASS_0302 hypothetical integral membrane protein K23512 rfuD; riboflavin transport system permease protein D TPASS_0300 rbsA1; ribose/galactose ABC transporter, ATP-binding protein K23513 rfuB; riboflavin transport system ATP-binding protein D TPASS_0582 hypothetical integral membrane protein K09808 lolC_E; lipoprotein-releasing system permease protein D TPASS_0580 hypothetical integral membrane protein K09808 lolC_E; lipoprotein-releasing system permease protein D TPASS_0581 ABC transporter, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D TPASS_0884 hypothetical integral membrane protein K07091 lptF; lipopolysaccharide export system permease protein D TPASS_0883 hypothetical integral membrane protein K11720 lptG; lipopolysaccharide export system permease protein D TPASS_0786 possible ABC transporter, ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] C 02060 Phosphotransferase system (PTS) [PATH:tpp02060] D TPASS_0589 ptsH; phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D TPASS_0085 ptsN1; PTS system, nitrogen regulatory IIA component K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D TPASS_0755 ptsN2; PTS system, nitrogen regulatory IIA component K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] C 03070 Bacterial secretion system [PATH:tpp03070] D TPASS_0410 secD; protein-export membrane protein K03072 secD; preprotein translocase subunit SecD D TPASS_0411 secF; protein-export membrane protein K03074 secF; preprotein translocase subunit SecF D TPASS_0235 secE; preprotein translocase subunit K03073 secE; preprotein translocase subunit SecE D TPASS_0536 hypothetical protein K03075 secG; preprotein translocase subunit SecG D TPASS_0208 secY; preprotein translocase subunit K03076 secY; preprotein translocase subunit SecY D TPASS_0949 membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D TPASS_0379 secA; preprotein translocase subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D TPASS_0578 ftsY; cell division protein K03110 ftsY; fused signal recognition particle receptor D TPASS_0416 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] B B 09132 Signal transduction C 02020 Two-component system [PATH:tpp02020] D TPASS_0792 flaB2; flagellar filament 33 kDa core protein K02406 fliC; flagellin D TPASS_0870 flaB3; flagellar filament 31 kDa core protein K02406 fliC; flagellin D TPASS_0709 RNA polymerase sigma-28 factor K02405 fliA; RNA polymerase sigma factor FliA D TPASS_0725 motA; flagellar motor rotation protein K02556 motA; chemotaxis protein MotA D TPASS_0001 dnaA; chromosomal replication initiation protein DnaA K02313 dnaA; chromosomal replication initiator protein D TPASS_0221 possible D,D-carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D TPASS_0657 csrA; carbon storage regulator K03563 csrA; carbon storage regulator D TPASS_0111 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D TPASS_0630 cheR; chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D TPASS_0040 mcp1; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPASS_0639 mcp3; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPASS_0640 mcp4; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPASS_0488 mcp2; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPASS_0439 cheW2; purine-binding chemotaxis protein K03408 cheW; purine-binding chemotaxis protein CheW D TPASS_0363 cheA; chemotaxis histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D TPASS_0366 cheY; chemotaxis response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D TPASS_0631 cheB; protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D TPASS_0364 cheW1; purine-binding chemotaxis protein K02659 pilI; twitching motility protein PilI C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:tpp02024] D TPASS_0145 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TPASS_0585 oppA; oligopeptide ABC transporter, periplasmic binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TPASS_0949 membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D TPASS_0235 secE; preprotein translocase subunit K03073 secE; preprotein translocase subunit SecE D TPASS_0536 hypothetical protein K03075 secG; preprotein translocase subunit SecG D TPASS_0208 secY; preprotein translocase subunit K03076 secY; preprotein translocase subunit SecY D TPASS_0379 secA; preprotein translocase subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D TPASS_0578 ftsY; cell division protein K03110 ftsY; fused signal recognition particle receptor D TPASS_0416 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:tpp02030] D TPASS_0040 mcp1; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPASS_0639 mcp3; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPASS_0640 mcp4; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPASS_0488 mcp2; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPASS_0545 mglB1; methylgalactoside ABC transporter, periplasmic galactose-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein D TPASS_0684 mglB2; methylgalactoside ABC transporter, periplasmic galactose-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein D TPASS_0363 cheA; chemotaxis histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D TPASS_0439 cheW2; purine-binding chemotaxis protein K03408 cheW; purine-binding chemotaxis protein CheW D TPASS_0366 cheY; chemotaxis response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D TPASS_0365 cheX; chemotaxis protein K03409 cheX; chemotaxis protein CheX D TPASS_0631 cheB; protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D TPASS_0630 cheR; chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D TPASS_0026 fliG1; flagellar motor switch protein K02410 fliG; flagellar motor switch protein FliG D TPASS_0400 fliG2; flagellar motor switch protein K02410 fliG; flagellar motor switch protein FliG D TPASS_0721 fliM; flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM D TPASS_0720 fliY; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN D TPASS_0725 motA; flagellar motor rotation protein K02556 motA; chemotaxis protein MotA D TPASS_0724 motB; flagellar motor rotation protein K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:tpp02040] D TPASS_0398 fliE; flagellar hook-basal body complex protein K02408 fliE; flagellar hook-basal body complex protein FliE D TPASS_0399 fliF; flagellar basal-body M ring protein K02409 fliF; flagellar M-ring protein FliF D TPASS_0026 fliG1; flagellar motor switch protein K02410 fliG; flagellar motor switch protein FliG D TPASS_0400 fliG2; flagellar motor switch protein K02410 fliG; flagellar motor switch protein FliG D TPASS_0401 fliH; flagellar assembly protein K02411 fliH; flagellar assembly protein FliH D TPASS_0402 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D TPASS_0403 possible flagellar protein K02413 fliJ; flagellar protein FliJ D TPASS_0722 fliL; flagellar protein K02415 fliL; flagellar protein FliL D TPASS_0378 possible flagellar protein K02415 fliL; flagellar protein FliL D TPASS_0721 fliM; flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM D TPASS_0720 fliY; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN D TPASS_0719 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ D TPASS_0718 fliP; flagellar biosynthetic protein K02419 fliP; flagellar biosynthesis protein FliP D TPASS_0717 fliQ; flagellar biosynthetic protein K02420 fliQ; flagellar biosynthesis protein FliQ D TPASS_0716 fliR; flagellar biosynthetic protein K02421 fliR; flagellar biosynthesis protein FliR D TPASS_0714 flhA; flagellar biosynthesis protein K02400 flhA; flagellar biosynthesis protein FlhA D TPASS_0715 flhB; flagellar biosynthetic protein K02401 flhB; flagellar biosynthesis protein FlhB D TPASS_0396 flgB; flagellar basal-body rod protein K02387 flgB; flagellar basal-body rod protein FlgB D TPASS_0397 flgC; flagellar basal-body rod protein K02388 flgC; flagellar basal-body rod protein FlgC D TPASS_0728 flgD; flagellar hook assembly scaffolding protein K02389 flgD; flagellar basal-body rod modification protein FlgD D TPASS_0727 flgE; flagellar hook protein K02390 flgE; flagellar hook protein FlgE D TPASS_0961 flgG2; flagellar basal-body rod protein K02391 flgF; flagellar basal-body rod protein FlgF D TPASS_0960 flgG1; flagellar basal-body rod protein K02392 flgG; flagellar basal-body rod protein FlgG D TPASS_0959 hypothetical protein K02395 flgJ; peptidoglycan hydrolase FlgJ D TPASS_0660 flgK; flagellar hook-associated protein 1 K02396 flgK; flagellar hook-associated protein 1 D TPASS_0659 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D TPASS_0792 flaB2; flagellar filament 33 kDa core protein K02406 fliC; flagellin D TPASS_0870 flaB3; flagellar filament 31 kDa core protein K02406 fliC; flagellin D TPASS_0872 fliD; flagellar filament cap protein K02407 fliD; flagellar hook-associated protein 2 D TPASS_0943 fliS; flagellar protein K02422 fliS; flagellar secretion chaperone FliS D TPASS_0725 motA; flagellar motor rotation protein K02556 motA; chemotaxis protein MotA D TPASS_0724 motB; flagellar motor rotation protein K02557 motB; chemotaxis protein MotB D TPASS_0493 rpoD; RNA polymerase sigma-70 factor K03086 rpoD; RNA polymerase primary sigma factor D TPASS_0111 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D TPASS_0709 RNA polymerase sigma-28 factor K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D TPASS_0817 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:tpp01501] D TPASS_0965 possible membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system D TPASS_0705 pbp2; penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D TPASS_0500 pbp1; penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D TPASS_0760 pbp3; penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:tpp01502] D TPASS_0670 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D TPASS_0681 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D TPASS_0386 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D TPASS_0345 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D TPASS_0523 murG; UDP-N-glucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D TPASS_0221 possible D,D-carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:tpp01503] D TPASS_0247 amiA; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D TPASS_0965 possible membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:tpp01000] C 01001 Protein kinases [BR:tpp01001] D TPASS_0363 cheA; chemotaxis histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:tpp01009] D TPASS_0108 pfk; pyrophosphate--fructose 6-phosphate 1-phosphotransferase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D TPASS_0984 htpG; heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG C 01002 Peptidases and inhibitors [BR:tpp01002] D TPASS_0978 lsp; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D TPASS_0112 pepC; aminopeptidase C K01372 BLMH; bleomycin hydrolase [EC:3.4.22.40] D TPASS_0861 glmS; glucosamine-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D TPASS_0445 thiJ; 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme K03152 thiJ; protein deglycase [EC:3.5.1.124] D TPASS_0335 hypothetical protein K07052 K07052; CAAX protease family protein D TPASS_0221 possible D,D-carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D TPASS_0025 hypothetical protein K06972 PITRM1; presequence protease [EC:3.4.24.-] D TPASS_0842 map; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D TPASS_0569 aminopeptidase P K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D TPASS_0765 ftsH; cell division protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D TPASS_0600 possible zinc protease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D TPASS_0800 dacC; serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D TPASS_1041 clpP2; ATP-dependent Clp protease proteolytic component K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D TPASS_0507 clpP1; ATP-dependent Clp protease proteolytic component K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D TPASS_0524 lon2; ATP-dependent protease LA K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D TPASS_0926 possible signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D TPASS_0185 sip; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D TPASS_0277 ctp; carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D TPASS_0997 sppA; protease IV K04773 sppA; protease IV [EC:3.4.21.-] D TPASS_0982 possible protein GlpG K07059 K07059; rhomboid family protein D TPASS_0688 mccF; immunity protein K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D TPASS_0114 hflC; Lambda CII stability-governing protein K04087 hflC; modulator of FtsH protease HflC D TPASS_0113 hflK; Lambda CII stability-governing protein K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases [BR:tpp01003] D TPASS_0705 pbp2; penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D TPASS_0275 possible UDP-N-acetyl-D-mannosamine transferase K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] C 01005 Lipopolysaccharide biosynthesis proteins C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:tpp01011] D TPASS_0029 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D TPASS_0090 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D TPASS_0341 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D TPASS_0903 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D TPASS_0933 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D TPASS_0670 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D TPASS_0681 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D TPASS_0406 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D TPASS_0688 mccF; immunity protein K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D TPASS_0345 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D TPASS_0523 murG; UDP-N-glucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D TPASS_0516 mviN; virulence factor K03980 murJ; putative peptidoglycan lipid II flippase D TPASS_0705 pbp2; penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D TPASS_0500 pbp1; penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D TPASS_0760 pbp3; penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D TPASS_0800 dacC; serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D TPASS_0221 possible D,D-carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D TPASS_0043 possible soluble lytic transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D TPASS_0623 dniR; membrane-bound lytic murein transglycosylase D K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29] D TPASS_0491 hypothetical protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D TPASS_0993 possible rare lipoprotein A K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D TPASS_0247 amiA; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:tpp01004] D TPASS_0145 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TPASS_0361 possible lysophosphatidic acid acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases [BR:tpp01006] D TPASS_0683 octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D TPASS_0603 hypothetical protein K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D TPASS_0637 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] C 01007 Amino acid related enzymes [BR:tpp01007] D TPASS_0644 lysS1; lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D TPASS_0673 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D TPASS_0834 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D TPASS_0632 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D TPASS_0091 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D TPASS_0831 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D TPASS_0798 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D TPASS_0452 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D TPASS_1035 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D TPASS_0586 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D TPASS_0985 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D TPASS_0609 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D TPASS_0641 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D TPASS_0672 glyS; glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D TPASS_0647 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D TPASS_0160 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D TPASS_0837 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D TPASS_1017 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D TPASS_0973 pheS; phenylalanyl-tRNA synthetase, subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D TPASS_0015 pheT; phenylalanyl-tRNA synthetase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D TPASS_0223 aspartate aminotransferase TpAAT K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:tpp00194] B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:tpp03000] D TPASS_0167 troR; cation-activated repressor protein K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D TPASS_0357 birA; biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D TPASS_0082 fhlA; formate hydrogenlyase transcriptional activator FhlA K12146 hyfR; hydrogenase-4 transcriptional activator D TPASS_0271 parB; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TPASS_0511 carD; transcription factor K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D TPASS_0096 possible dnaK suppressor K06204 dksA; RNA polymerase-binding transcription factor D TPASS_0383 hypothetical protein K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:tpp03021] D TPASS_0380 possible DNA repair helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D TPASS_0212 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D TPASS_0241 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D TPASS_0242 rpoC; DNA-directed RNA polymerase, beta subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D TPASS_0701 possible DNA-directed RNA polymerase K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D TPASS_0493 rpoD; RNA polymerase sigma-70 factor K03086 rpoD; RNA polymerase primary sigma factor D TPASS_1012 sigA; RNA polymerase sigma-43 factor K03087 rpoS; RNA polymerase nonessential primary-like sigma factor D TPASS_0092 rpoE; RNA polymerase sigma-24 factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D TPASS_0111 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D TPASS_0709 RNA polymerase sigma-28 factor K02405 fliA; RNA polymerase sigma factor FliA D TPASS_0892 nusA; N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA D TPASS_1015 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB D TPASS_0236 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG D TPASS_0540 spoIIAA2; anti-sigma F factor antagonist K04749 rsbV; anti-sigma B factor antagonist D TPASS_0233 possible anti-sigma F factor antagonist K04749 rsbV; anti-sigma B factor antagonist D TPASS_0096 possible dnaK suppressor K06204 dksA; RNA polymerase-binding transcription factor D TPASS_0019 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D TPASS_0254 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:tpp03019] D TPASS_0809 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D TPASS_1018 hypothetical protein K18682 rny; ribonucrease Y [EC:3.1.-.-] D TPASS_0770 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D TPASS_0103 possible ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D TPASS_0817 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D TPASS_0886 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D TPASS_0254 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D TPASS_0108 pfk; pyrophosphate--fructose 6-phosphate 1-phosphotransferase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D TPASS_0216 dnaK; heat shock protein 70 K04043 dnaK; molecular chaperone DnaK D TPASS_0030 groEL; heat shock protein GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D TPASS_0596 pcnB; polynucleotide adenylyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D TPASS_0657 csrA; carbon storage regulator K03563 csrA; carbon storage regulator D TPASS_0526 hrpA; ATP-dependent helicase K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] C 03041 Spliceosome C 03011 Ribosome [BR:tpp03011] D TPASS_0279 rpsA; ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D TPASS_0606 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D TPASS_0195 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D TPASS_0306 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D TPASS_0206a rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D TPASS_0063 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D TPASS_0244 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D TPASS_0203 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D TPASS_1024 rpsI; ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D TPASS_0188 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D TPASS_0211 rpsK; ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D TPASS_0243 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D TPASS_0210 rpsM; ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D TPASS_0202 rpsN; ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D TPASS_0887 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D TPASS_0905 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D TPASS_0198 rpsQ; ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D TPASS_0061 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D TPASS_0193 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D TPASS_0250b rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D TPASS_0758 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D TPASS_0238 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D TPASS_0192 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D TPASS_0189 rplC; ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D TPASS_0190 rplD; ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D TPASS_0201 rplE; ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D TPASS_0204 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D TPASS_0060 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D TPASS_0239 rplJ; ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D TPASS_0237 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D TPASS_0240 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D TPASS_1025 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D TPASS_0199 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D TPASS_0207 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D TPASS_0196 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D TPASS_0213 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D TPASS_0205 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D TPASS_0909 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D TPASS_0848 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D TPASS_0745 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D TPASS_0194 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D TPASS_0191 rplW; ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D TPASS_0200 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D TPASS_0743 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D TPASS_0362 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D TPASS_0197 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D TPASS_0206b rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D TPASS_0255 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D TPASS_0807 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D TPASS_0234 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D TPASS_0951 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D TPASS_0849 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D TPASS_0209 rpmJ1; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D TPASS_0372 ctc; general stress protein K02897 RP-L25; large subunit ribosomal protein L25 D TPASS_r0006 rrf2; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D TPASS_r0003 rrf1; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D TPASS_r0004 rrs2; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TPASS_r0001 rrs1; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TPASS_r0002 rrl1; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D TPASS_r0005 rrl2; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:tpp03009] D TPASS_0809 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D TPASS_0541 era; GTP-binding protein K03595 era; GTPase D TPASS_0742 obg; GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-] D TPASS_0096 possible dnaK suppressor K06204 dksA; RNA polymerase-binding transcription factor D TPASS_0892 nusA; N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA D TPASS_1015 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB D TPASS_0236 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG D TPASS_0337 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D TPASS_0065 hypothetical protein K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D TPASS_0032 hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D TPASS_0276 hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D TPASS_0946 gidB; glucose-inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D TPASS_0384 hypothetical protein K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D TPASS_0975 hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D TPASS_0109 possible rRNA methylase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D TPASS_0682 ftsJ; cell division protein K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D TPASS_0068 hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D TPASS_0459 hypothetical protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D TPASS_0231 hypothetical protein K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D TPASS_0339 hypothetical protein K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D TPASS_0907 hypothetical protein K02860 rimM; 16S rRNA processing protein RimM D TPASS_0770 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D TPASS_0689 GTP-binding protein K03977 engA; GTPase D TPASS_0182 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D TPASS_0890 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D TPASS_0893 hypothetical protein K09748 rimP; ribosome maturation factor RimP D TPASS_0738 hypothetical protein K09710 ybeB; ribosome-associated protein D TPASS_0650 hypothetical protein K07042 ybeY; probable rRNA maturation factor D TPASS_0124 possible GTP-binding protein K06942 ychF; ribosome-binding ATPase C 03016 Transfer RNA biogenesis [BR:tpp03016] D TPASS_0819 hypothetical protein K00784 rnz; ribonuclease Z [EC:3.1.26.11] D TPASS_0270 pcnA; polynucleotide adenylyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D TPASS_0673 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D TPASS_0160 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D TPASS_0452 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D TPASS_0586 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D TPASS_0798 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D TPASS_0831 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D TPASS_0985 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D TPASS_1017 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D TPASS_0609 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D TPASS_0672 glyS; glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D TPASS_0837 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D TPASS_0647 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D TPASS_0091 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D TPASS_1035 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D TPASS_0641 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D TPASS_0973 pheS; phenylalanyl-tRNA synthetase, subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D TPASS_0015 pheT; phenylalanyl-tRNA synthetase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D TPASS_0834 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D TPASS_0632 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D TPASS_0464 hypothetical protein K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D TPASS_0830 hisT; pseudouridylate synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D TPASS_0889 truB; tRNA pseudouridine 55 synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D TPASS_0863 nifS2; nitrogen fixation protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D TPASS_0182 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D TPASS_0637 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D TPASS_0550 thdF; thiophene and furan oxidation protein K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D TPASS_0044 gidA; glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D TPASS_0805 rnb; exoribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1] D TPASS_0644 lysS1; lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D TPASS_0980 ntrB; histidine phosphokinase/phophatase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D TPASS_0754 hypothetical protein K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D TPASS_0269 hypothetical protein K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5] D TPASS_0908 trmD; tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D TPASS_0559 hypothetical protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D TPASS_0373 hypothetical protein K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D TPASS_0876 hypothetical protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D TPASS_0875 hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D TPASS_0886 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:tpp03012] D TPASS_0891 infB; translation initiation factor 2 K02519 infB; translation initiation factor IF-2 D TPASS_0850 infC; translation initiation factor 3 K02520 infC; translation initiation factor IF-3 D TPASS_0605 tsf; translation elongation factor TS K02357 tsf; elongation factor Ts D TPASS_0187 tuf; translation elongation factor TU K02358 tuf; elongation factor Tu D TPASS_0767 fusA2; translation elongation factor G K02355 fusA; elongation factor G D TPASS_0450 fusA1; translation elongation factor G K02355 fusA; elongation factor G D TPASS_0051 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D TPASS_0604 ribosome recycling factor K02838 frr; ribosome recycling factor D TPASS_0052 hemK; protoporphyrinogen oxidase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D TPASS_1011 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D TPASS_0097 infA; translation initiation factor 1 K02518 infA; translation initiation factor IF-1 D TPASS_0525 efp; translation elongation factor P K02356 efp; elongation factor P D TPASS_1040 lysS2; lysyl-tRNA synthetase K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-] D TPASS_0576 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 C 03110 Chaperones and folding catalysts [BR:tpp03110] D TPASS_0801 clpA; ATP-dependent Clp protease, subunit A K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA D TPASS_0071 clpB; ATP-dependent Clp protease, subunit B K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D TPASS_0549 clpC; ATP-dependent Clp protease, subunit C K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC D TPASS_0508 clpX; ATP-dependent Clp protease subunit X K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D TPASS_0984 htpG; heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG D TPASS_0216 dnaK; heat shock protein 70 K04043 dnaK; molecular chaperone DnaK D TPASS_0030 groEL; heat shock protein GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D TPASS_0098 possible heat-shock protein K03686 dnaJ; molecular chaperone DnaJ D TPASS_0215 grpE; chaperone protein GrpE K03687 GRPE; molecular chaperone GrpE D TPASS_1013 groES; chaperonin GroES K04078 groES; chaperonin GroES D TPASS_0765 ftsH; cell division protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D TPASS_0862 fklB; peptidyl-prolyl cis-trans isomerase, FKBP-type, 22 kDa K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8] D TPASS_0349 slyD; peptidyl-prolyl cis-trans isomerase, FKBP-type K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D TPASS_0919 trx; thioredoxin K03671 TXN; thioredoxin C 04131 Membrane trafficking [BR:tpp04131] D TPASS_1010 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D TPASS_0505 hxk; hexokinase K00844 HK; hexokinase [EC:2.7.1.1] D TPASS_0844 gap; glyceraldehyde 3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D TPASS_0168 pgm; phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D TPASS_0984 htpG; heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG C 04121 Ubiquitin system [BR:tpp04121] C 03051 Proteasome [BR:tpp03051] D TPASS_0984 htpG; heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:tpp03032] D TPASS_0353 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D TPASS_0251 DNA-binding protein II K04764 ihfA; integration host factor subunit alpha D TPASS_0001 dnaA; chromosomal replication initiation protein DnaA K02313 dnaA; chromosomal replication initiator protein D TPASS_0058 dnaB; replicative DNA helicase DnaB K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D TPASS_0492 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D TPASS_0062 ssb; single-strand DNA binding protein Ssb K03111 ssb; single-strand DNA-binding protein D TPASS_0310 hypothetical protein K03111 ssb; single-strand DNA-binding protein D TPASS_0669 dnaE; DNA polymerase III, subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D TPASS_0002 dnaN; DNA-directed DNA polymerase beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D TPASS_0588 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D TPASS_0643 dnaQ; DNA polymerase III, subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TPASS_1005 dnaZX; DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TPASS_0521 possible DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TPASS_0634 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TPASS_0810 dam; DNA adenine methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D TPASS_0005 gyrA; DNA topoisomerase (ATP-hydrolyzing) subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D TPASS_1006 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D TPASS_0394 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:tpp03036] D TPASS_0809 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D TPASS_0251 DNA-binding protein II K04764 ihfA; integration host factor subunit alpha D TPASS_0001 dnaA; chromosomal replication initiation protein DnaA K02313 dnaA; chromosomal replication initiator protein D TPASS_1038 tpF1; bacterioferrin TpF1 K04047 dps; starvation-inducible DNA-binding protein D TPASS_0367 possible chromosome segregation protein K03529 smc; chromosome segregation protein D TPASS_0691 hypothetical protein K05896 scpA; segregation and condensation protein A D TPASS_0458 hypothetical protein K06024 scpB; segregation and condensation protein B D TPASS_0389 ftsA; cell division protein K03590 ftsA; cell division protein FtsA D TPASS_0760 pbp3; penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D TPASS_0999 possible cell division protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D TPASS_0385 hypothetical protein K03586 ftsL; cell division protein FtsL D TPASS_0388 ftsQ; cell division protein K03589 ftsQ; cell division protein FtsQ D TPASS_0387 ftsW; cell division protein K03588 ftsW; cell division protein FtsW D TPASS_0390 ftsZ; cell division protein K03531 ftsZ; cell division protein FtsZ D TPASS_0247 amiA; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D TPASS_0965 possible membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system D TPASS_0497 mreB; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D TPASS_0498 mreC; rod shape-determining protein K03570 mreC; rod shape-determining protein MreC D TPASS_0499 mreD; rod shape-determining protein K03571 mreD; rod shape-determining protein MreD D TPASS_0501 rodA; rod shape-determining protein K05837 rodA; rod shape determining protein RodA D TPASS_0272 parA; chromosome partitioning protein K03496 parA; chromosome partitioning protein D TPASS_0271 parB; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TPASS_0044 gidA; glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D TPASS_0946 gidB; glucose-inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D TPASS_0391 codV; integrase/recombinase K04763 xerD; integrase/recombinase XerD C 03400 DNA repair and recombination proteins [BR:tpp03400] D TPASS_0141 dat; methylated-DNA-protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D TPASS_0343 possible A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D TPASS_0775 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D TPASS_0380 possible DNA repair helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D TPASS_0885 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D TPASS_0229 DNA polymerase, bacteriophage-type K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D TPASS_0125 exoA; exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D TPASS_0704 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D TPASS_0634 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TPASS_0514 uvrA; excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A D TPASS_0116 uvrB; excinuclease ABC, subunit B K03702 uvrB; excinuclease ABC subunit B D TPASS_0472 uvrC; excinuclease ABC, subunit C K03703 uvrC; excinuclease ABC subunit C D TPASS_1028 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TPASS_0102 rep; Rep helicase, single-stranded DNA-dependent ATPase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TPASS_0241 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D TPASS_0242 rpoC; DNA-directed RNA polymerase, beta subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D TPASS_0212 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D TPASS_0701 possible DNA-directed RNA polymerase K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D TPASS_0344 trcF; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D TPASS_0328 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D TPASS_0303 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D TPASS_0669 dnaE; DNA polymerase III, subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D TPASS_0002 dnaN; DNA-directed DNA polymerase beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D TPASS_0588 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D TPASS_0643 dnaQ; DNA polymerase III, subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TPASS_1005 dnaZX; DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TPASS_0521 possible DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TPASS_0062 ssb; single-strand DNA binding protein Ssb K03111 ssb; single-strand DNA-binding protein D TPASS_0310 hypothetical protein K03111 ssb; single-strand DNA-binding protein D TPASS_0810 dam; DNA adenine methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D TPASS_0692 recA; protein RecA K03553 recA; recombination protein RecA D TPASS_0543 ruvA; Holliday junction DNA helicase, subunit A K03550 ruvA; holliday junction DNA helicase RuvA D TPASS_0162 ruvB; Holliday junction DNA helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D TPASS_0517 ruvC; Holliday junction nuclease, subunit C K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D TPASS_0230 priA; primosomal protein N K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D TPASS_0627 sbcC; exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 D TPASS_0626 possible exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 D TPASS_1022 sms; DNA repair protein K04485 radA; DNA repair protein RadA/Sms D TPASS_0003 recF; recombination protein RecF K03629 recF; DNA replication and repair protein RecF D TPASS_0687 recG; DNA recombinase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D TPASS_1004 recR; recombination protein RecR K06187 recR; recombination protein RecR D TPASS_0442 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D TPASS_0005 gyrA; DNA topoisomerase (ATP-hydrolyzing) subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D TPASS_1006 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D TPASS_0394 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D TPASS_0251 DNA-binding protein II K04764 ihfA; integration host factor subunit alpha D TPASS_0103 possible ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D TPASS_1023 recX; protein RecX K03565 recX; regulatory protein D TPASS_1008 nrdA; ribonucleoside-diphosphate reductase, subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TPASS_0053 nrdB; ribonucleoside-diphosphate reductase, subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D TPASS_0436 hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] C 03029 Mitochondrial biogenesis [BR:tpp03029] D TPASS_0891 infB; translation initiation factor 2 K02519 infB; translation initiation factor IF-2 D TPASS_0850 infC; translation initiation factor 3 K02520 infC; translation initiation factor IF-3 D TPASS_0605 tsf; translation elongation factor TS K02357 tsf; elongation factor Ts D TPASS_0187 tuf; translation elongation factor TU K02358 tuf; elongation factor Tu D TPASS_0767 fusA2; translation elongation factor G K02355 fusA; elongation factor G D TPASS_0450 fusA1; translation elongation factor G K02355 fusA; elongation factor G D TPASS_0541 era; GTP-binding protein K03595 era; GTPase D TPASS_0834 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D TPASS_0586 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D TPASS_0985 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D TPASS_0672 glyS; glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D TPASS_0831 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D TPASS_1020 gatA; glu-tRNA amidotransferase, subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D TPASS_1021 gatB; glu-tRNA amidotransferase, subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D TPASS_0062 ssb; single-strand DNA binding protein Ssb K03111 ssb; single-strand DNA-binding protein D TPASS_0310 hypothetical protein K03111 ssb; single-strand DNA-binding protein D TPASS_0326 outer membrane protein K07277 SAM50; outer membrane protein insertion porin family D TPASS_0216 dnaK; heat shock protein 70 K04043 dnaK; molecular chaperone DnaK D TPASS_0215 grpE; chaperone protein GrpE K03687 GRPE; molecular chaperone GrpE D TPASS_0030 groEL; heat shock protein GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D TPASS_1013 groES; chaperonin GroES K04078 groES; chaperonin GroES D TPASS_0098 possible heat-shock protein K03686 dnaJ; molecular chaperone DnaJ D TPASS_0863 nifS2; nitrogen fixation protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D TPASS_0949 membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D TPASS_0984 htpG; heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:tpp02000] D TPASS_0144 possible thiamine ABC transporter, thiamine-binding periplasmic protein K02064 thiB; thiamine transport system substrate-binding protein D TPASS_0143 possible thiamine ABC transporter, permease protein K02063 thiP; thiamine transport system permease protein D TPASS_0142 possible thiamine ABC transporter, ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D TPASS_0655 potD; spermidine/putrescine ABC transporter, periplasmic binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D TPASS_0654 potC; spermidine/putrescine ABC transporter, permease protein K11070 potC; spermidine/putrescine transport system permease protein D TPASS_0653 potB; spermidine/putrescine ABC transporter, permease protein K11071 potB; spermidine/putrescine transport system permease protein D TPASS_0652 potA; spermidine/putrescine ABC transporter, ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D TPASS_0804 ugpC; sugar ABC transporter, ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D TPASS_0545 mglB1; methylgalactoside ABC transporter, periplasmic galactose-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein D TPASS_0684 mglB2; methylgalactoside ABC transporter, periplasmic galactose-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein D TPASS_0686 mglC; methylgalactoside ABC transporter, permease protein K10541 mglC; methyl-galactoside transport system permease protein D TPASS_0685 mglA; methylgalactoside ABC transporter, ATP binding protein K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11] D TPASS_0319 tmpC; membrane lipoprotein TmpC K07335 bmpA; basic membrane protein A and related proteins D TPASS_0322 rbsC1; ribose/galactose ABC transporter, permease protein K23535 nupB; general nucleoside transport system permease protein D TPASS_0323 rbsC2; ribose/galactose ABC transporter, permease protein K23536 nupC; general nucleoside transport system permease protein D TPASS_0321 rbsA2; ribose/galactose ABC transporter, ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D TPASS_0298 tpn38b; exported protein TpN38b K23510 rfuA; riboflavin transport system substrate-binding protein D TPASS_0301 hypothetical integral membrane protein K23511 rfuC; riboflavin transport system permease protein D TPASS_0302 hypothetical integral membrane protein K23512 rfuD; riboflavin transport system permease protein D TPASS_0300 rbsA1; ribose/galactose ABC transporter, ATP-binding protein K23513 rfuB; riboflavin transport system ATP-binding protein D TPASS_0074 y4oP; sugar ABC transporter, periplasmic binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D TPASS_0737 msmE; sugar ABC transporter, periplasmic binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D TPASS_0075 y4oQ; sugar ABC transporter, permease protein K02025 ABC.MS.P; multiple sugar transport system permease protein D TPASS_0076 y4oR; sugar ABC transporter, permease protein K02026 ABC.MS.P1; multiple sugar transport system permease protein D TPASS_0821 tpn32; lipoprotein Tpn32 K02073 metQ; D-methionine transport system substrate-binding protein D TPASS_0119 yaeE; amino acid ABC transporter, permease protein K02072 metI; D-methionine transport system permease protein D TPASS_0120 amino acid ABC transporter, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D TPASS_0308 hisJ; amino acid ABC transporter, periplasmic binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D TPASS_0309 amino acid ABC transporter, periplasmic binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D TPASS_0585 oppA; oligopeptide ABC transporter, periplasmic binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TPASS_0034 ABC transporter, periplasmic binding protein K09815 znuA; zinc transport system substrate-binding protein D TPASS_0036 ABC transporter, permease protein K09816 znuB; zinc transport system permease protein D TPASS_0035 ABC transporter, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D TPASS_0163 troA; ABC transporter, periplasmic binding protein K11707 troA; manganese/zinc/iron transport system substrate-binding protein D TPASS_0165 troC; ABC transporter, permease protein K11708 troC; manganese/zinc/iron transport system permease protein D TPASS_0166 troD; ABC transporter, permease protein K11709 troD; manganese/zinc/iron transport system permease protein D TPASS_0164 troB; ABC transporter, ATP-binding protein K11710 troB; manganese/zinc/iron transport system ATP- binding protein [EC:7.2.2.5] D TPASS_0228 possible biotin synthase K03523 bioY; biotin transport system substrate-specific component D TPASS_0226 hypothetical protein K16783 bioN; biotin transport system permease protein D TPASS_0227 cobalt ABC transporter, ATP-binding protein K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-] D TPASS_0884 hypothetical integral membrane protein K07091 lptF; lipopolysaccharide export system permease protein D TPASS_0883 hypothetical integral membrane protein K11720 lptG; lipopolysaccharide export system permease protein D TPASS_0786 possible ABC transporter, ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D TPASS_0880 possible membrane spanning protein K25151 gldF; gliding motility-associated transport system permease protein D TPASS_0881 natA; ABC transporter, ATP-binding protein K25152 gldA; gliding motility-associated transport system ATP-binding protein D TPASS_0879 hypothetical protein K25153 gldG; gliding motility-associatede transport system auxiliary component D TPASS_0582 hypothetical integral membrane protein K09808 lolC_E; lipoprotein-releasing system permease protein D TPASS_0580 hypothetical integral membrane protein K09808 lolC_E; lipoprotein-releasing system permease protein D TPASS_0581 ABC transporter, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D TPASS_0962 hypothetical integral membrane protein K02004 ABC.CD.P; putative ABC transport system permease protein D TPASS_0963 hypothetical integral membrane protein K02004 ABC.CD.P; putative ABC transport system permease protein D TPASS_0964 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D TPASS_0611 ABC transporter, ATP-binding protein K09013 sufC; Fe-S cluster assembly ATP-binding protein D TPASS_0901 hypothetical integral membrane protein K26937 dinF; MATE family, multidrug efflux pump D TPASS_0589 ptsH; phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D TPASS_0085 ptsN1; PTS system, nitrogen regulatory IIA component K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D TPASS_0755 ptsN2; PTS system, nitrogen regulatory IIA component K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D TPASS_0917 mgtE; Mg2+ transport protein K06213 mgtE; magnesium transporter D TPASS_0725 motA; flagellar motor rotation protein K02556 motA; chemotaxis protein MotA D TPASS_0724 motB; flagellar motor rotation protein K02557 motB; chemotaxis protein MotB D TPASS_0027 possible hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family D TPASS_0326 outer membrane protein K07277 SAM50; outer membrane protein insertion porin family D TPASS_0785 hypothetical protein K09774 lptA; lipopolysaccharide export system protein LptA D TPASS_0649 tlyC; hemolysin K06189 corC; hemolysin (HlyC) family protein D TPASS_1034 hypothetical integral membrane protein K07301 yrbG; cation:H+ antiporter D TPASS_0140 ntpJ; K+ transport protein K03498 trkH; trk/ktr system potassium uptake protein D TPASS_0024 hypothetical protein K03499 trkA; trk/ktr system potassium uptake protein D TPASS_0139 hypothetical protein K03499 trkA; trk/ktr system potassium uptake protein D TPASS_0513 trkA; K+ transport protein K03499 trkA; trk/ktr system potassium uptake protein D TPASS_0771 hypothetical integral membrane protein K03324 yjbB; phosphate:Na+ symporter D TPASS_0516 mviN; virulence factor K03980 murJ; putative peptidoglycan lipid II flippase D TPASS_0387 ftsW; cell division protein K03588 ftsW; cell division protein FtsW D TPASS_0972 hypothetical integral membrane protein K07243 FTR; high-affinity iron transporter D TPASS_0971 tpd; membrane antigen, pathogen-specific K07230 p19; periplasmic iron binding protein D TPASS_0057 oadB; oxaloacetate decarboxylase, subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D TPASS_0056 oadA; oxaloacetate decarboxylase, subunit alpha K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D TPASS_0055 hypothetical protein K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma D TPASS_0101 ccdA; cytochrome c biogenesis protein K06196 ccdA; cytochrome c-type biogenesis protein D TPASS_0965 possible membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system D TPASS_0774 mgtC; Mg2+ transport protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein C 02044 Secretion system [BR:tpp02044] D TPASS_0364 cheW1; purine-binding chemotaxis protein K02659 pilI; twitching motility protein PilI D TPASS_0668 hypothetical integral membrane protein K02221 yggT; YggT family protein D TPASS_0274 possible deoxycytidylate deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12] D TPASS_0714 flhA; flagellar biosynthesis protein K02400 flhA; flagellar biosynthesis protein FlhA D TPASS_0715 flhB; flagellar biosynthetic protein K02401 flhB; flagellar biosynthesis protein FlhB D TPASS_0911 hypothetical protein K04061 flhB2; flagellar biosynthesis protein D TPASS_0399 fliF; flagellar basal-body M ring protein K02409 fliF; flagellar M-ring protein FliF D TPASS_0401 fliH; flagellar assembly protein K02411 fliH; flagellar assembly protein FliH D TPASS_0402 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D TPASS_0720 fliY; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN D TPASS_0719 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ D TPASS_0718 fliP; flagellar biosynthetic protein K02419 fliP; flagellar biosynthesis protein FliP D TPASS_0717 fliQ; flagellar biosynthetic protein K02420 fliQ; flagellar biosynthesis protein FliQ D TPASS_0716 fliR; flagellar biosynthetic protein K02421 fliR; flagellar biosynthesis protein FliR D TPASS_0379 secA; preprotein translocase subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D TPASS_0410 secD; protein-export membrane protein K03072 secD; preprotein translocase subunit SecD D TPASS_0235 secE; preprotein translocase subunit K03073 secE; preprotein translocase subunit SecE D TPASS_0411 secF; protein-export membrane protein K03074 secF; preprotein translocase subunit SecF D TPASS_0536 hypothetical protein K03075 secG; preprotein translocase subunit SecG D TPASS_0208 secY; preprotein translocase subunit K03076 secY; preprotein translocase subunit SecY D TPASS_0416 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D TPASS_0578 ftsY; cell division protein K03110 ftsY; fused signal recognition particle receptor D TPASS_0949 membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase C 02042 Bacterial toxins [BR:tpp02042] D TPASS_0027 possible hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family D TPASS_1037 hlyIII; hemolysin III K11068 hlyIII; hemolysin III C 02022 Two-component system [BR:tpp02022] D TPASS_0363 cheA; chemotaxis histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D TPASS_0366 cheY; chemotaxis response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D TPASS_0631 cheB; protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] C 02035 Bacterial motility proteins [BR:tpp02035] D TPASS_0363 cheA; chemotaxis histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D TPASS_0439 cheW2; purine-binding chemotaxis protein K03408 cheW; purine-binding chemotaxis protein CheW D TPASS_0365 cheX; chemotaxis protein K03409 cheX; chemotaxis protein CheX D TPASS_0630 cheR; chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D TPASS_0631 cheB; protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D TPASS_0366 cheY; chemotaxis response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D TPASS_0040 mcp1; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPASS_0639 mcp3; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPASS_0640 mcp4; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPASS_0488 mcp2; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPASS_0401 fliH; flagellar assembly protein K02411 fliH; flagellar assembly protein FliH D TPASS_0402 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D TPASS_0403 possible flagellar protein K02413 fliJ; flagellar protein FliJ D TPASS_0719 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ D TPASS_0718 fliP; flagellar biosynthetic protein K02419 fliP; flagellar biosynthesis protein FliP D TPASS_0717 fliQ; flagellar biosynthetic protein K02420 fliQ; flagellar biosynthesis protein FliQ D TPASS_0716 fliR; flagellar biosynthetic protein K02421 fliR; flagellar biosynthesis protein FliR D TPASS_0714 flhA; flagellar biosynthesis protein K02400 flhA; flagellar biosynthesis protein FlhA D TPASS_0715 flhB; flagellar biosynthetic protein K02401 flhB; flagellar biosynthesis protein FlhB D TPASS_0026 fliG1; flagellar motor switch protein K02410 fliG; flagellar motor switch protein FliG D TPASS_0400 fliG2; flagellar motor switch protein K02410 fliG; flagellar motor switch protein FliG D TPASS_0721 fliM; flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM D TPASS_0720 fliY; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN D TPASS_0399 fliF; flagellar basal-body M ring protein K02409 fliF; flagellar M-ring protein FliF D TPASS_0722 fliL; flagellar protein K02415 fliL; flagellar protein FliL D TPASS_0378 possible flagellar protein K02415 fliL; flagellar protein FliL D TPASS_0398 fliE; flagellar hook-basal body complex protein K02408 fliE; flagellar hook-basal body complex protein FliE D TPASS_0396 flgB; flagellar basal-body rod protein K02387 flgB; flagellar basal-body rod protein FlgB D TPASS_0397 flgC; flagellar basal-body rod protein K02388 flgC; flagellar basal-body rod protein FlgC D TPASS_0728 flgD; flagellar hook assembly scaffolding protein K02389 flgD; flagellar basal-body rod modification protein FlgD D TPASS_0961 flgG2; flagellar basal-body rod protein K02391 flgF; flagellar basal-body rod protein FlgF D TPASS_0960 flgG1; flagellar basal-body rod protein K02392 flgG; flagellar basal-body rod protein FlgG D TPASS_0959 hypothetical protein K02395 flgJ; peptidoglycan hydrolase FlgJ D TPASS_0727 flgE; flagellar hook protein K02390 flgE; flagellar hook protein FlgE D TPASS_0660 flgK; flagellar hook-associated protein 1 K02396 flgK; flagellar hook-associated protein 1 D TPASS_0659 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D TPASS_0792 flaB2; flagellar filament 33 kDa core protein K02406 fliC; flagellin D TPASS_0870 flaB3; flagellar filament 31 kDa core protein K02406 fliC; flagellin D TPASS_0872 fliD; flagellar filament cap protein K02407 fliD; flagellar hook-associated protein 2 D TPASS_0943 fliS; flagellar protein K02422 fliS; flagellar secretion chaperone FliS D TPASS_0709 RNA polymerase sigma-28 factor K02405 fliA; RNA polymerase sigma factor FliA D TPASS_0725 motA; flagellar motor rotation protein K02556 motA; chemotaxis protein MotA D TPASS_0724 motB; flagellar motor rotation protein K02557 motB; chemotaxis protein MotB D TPASS_0658 possible transmembrane protein K13626 fliW; flagellar assembly factor FliW D TPASS_0567 hypothetical protein K02383 flbB; flagellar protein FlbB D TPASS_0726 flbD; flagellar protein K02385 flbD; flagellar protein FlbD D TPASS_0713 flhF; flagellar-associated GTP-binding protein K02404 flhF; flagellar biosynthesis protein FlhF D TPASS_0712 ylxH1; ATP-binding protein K04562 flhG; flagellar biosynthesis protein FlhG D TPASS_0853 ylxH2; ATP-binding protein K04562 flhG; flagellar biosynthesis protein FlhG D TPASS_0364 cheW1; purine-binding chemotaxis protein K02659 pilI; twitching motility protein PilI C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:tpp04812] D TPASS_0497 mreB; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D TPASS_0390 ftsZ; cell division protein K03531 ftsZ; cell division protein FtsZ D TPASS_0389 ftsA; cell division protein K03590 ftsA; cell division protein FtsA D TPASS_0272 parA; chromosome partitioning protein K03496 parA; chromosome partitioning protein D TPASS_0271 parB; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:tpp04147] D TPASS_0984 htpG; heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG D TPASS_0817 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D TPASS_0844 gap; glyceraldehyde 3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D TPASS_0538 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D TPASS_0030 groEL; heat shock protein GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D TPASS_0216 dnaK; heat shock protein 70 K04043 dnaK; molecular chaperone DnaK D TPASS_0475 gpi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D TPASS_0187 tuf; translation elongation factor TU K02358 tuf; elongation factor Tu D TPASS_0145 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TPASS_0595 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D TPASS_1039 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D TPASS_0418 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D TPASS_0478 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D TPASS_0537 tpi; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D TPASS_0168 pgm; phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] C 02048 Prokaryotic defense system [BR:tpp02048] D TPASS_0810 dam; DNA adenine methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D TPASS_0390 ftsZ; cell division protein K03531 ftsZ; cell division protein FtsZ D TPASS_0497 mreB; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D TPASS_0673 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D TPASS_0863 nifS2; nitrogen fixation protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules [BR:tpp04090] C 01504 Antimicrobial resistance genes [BR:tpp01504] D TPASS_0221 possible D,D-carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D TPASS_0965 possible membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:tpp00537] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:tpp03100] D TPASS_t0045 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D TPASS_t0041 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D TPASS_t0015 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D TPASS_t0030 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TPASS_t0003 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TPASS_t0031 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TPASS_t0026 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TPASS_t0035 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TPASS_t0024 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D TPASS_t0028 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D TPASS_t0025 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D TPASS_t0006 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D TPASS_t0018 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D TPASS_t0007 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D TPASS_t0008 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D TPASS_t0023 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D TPASS_t0017 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D TPASS_t0032 tRNA-His K14226 tRNA-His; tRNA His D TPASS_t0012 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D TPASS_t0022 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TPASS_t0010 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TPASS_t0044 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TPASS_t0040 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TPASS_t0016 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TPASS_t0039 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D TPASS_t0021 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D TPASS_t0037 tRNA-Met K14230 tRNA-Met; tRNA Met D TPASS_t0011 tRNA-Met K14230 tRNA-Met; tRNA Met D TPASS_t0029 tRNA-Met K14230 tRNA-Met; tRNA Met D TPASS_t0033 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D TPASS_t0034 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D TPASS_t0038 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D TPASS_t0027 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D TPASS_t0004 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TPASS_t0001 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TPASS_t0002 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TPASS_t0005 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TPASS_t0013 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D TPASS_t0042 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D TPASS_t0019 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D TPASS_t0014 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D TPASS_t0020 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D TPASS_t0036 tRNA-Val K14237 tRNA-Val; tRNA Val D TPASS_t0043 tRNA-Val K14237 tRNA-Val; tRNA Val D TPASS_t0009 tRNA-Val K14237 tRNA-Val; tRNA Val D TPASS_r0004 rrs2; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TPASS_r0001 rrs1; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TPASS_r0002 rrl1; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D TPASS_r0005 rrl2; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D TPASS_r0006 rrf2; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D TPASS_r0003 rrf1; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D TPASS_0633 msrA; protein-methionine-S-oxide reductase K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12] D TPASS_0509 ahpC; alkyl hydroperoxide reductase K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26] D TPASS_0823 rbo; desulfoferrodoxin K05919 dfx; superoxide reductase [EC:1.15.1.2] D TPASS_0736 hydG; hydrogenase, gamma chain K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D TPASS_0417 cutE; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D TPASS_0252 possible apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D TPASS_0852 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D TPASS_0796 hypothetical protein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D TPASS_0826 hypothetical protein K18672 dacA; diadenylate cyclase [EC:2.7.7.85] D TPASS_0591 ptsK; HPr kinase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] D TPASS_0902 est; carboxylesterase K03928 yvaK; carboxylesterase [EC:3.1.1.1] D TPASS_0156 hypothetical protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D TPASS_0651 hypothetical integral membrane protein K07037 pgpH; cyclic-di-AMP phosphodiesterase PgpH [EC:3.1.4.-] D TPASS_0979 hypothetical protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D TPASS_0994 hypothetical protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D TPASS_0757 def; polypeptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] C 99981 Carbohydrate metabolism C 99982 Energy metabolism D TPASS_0615 nifU; nitrogen fixation protein K04488 iscU; nitrogen fixation protein NifU and related proteins D TPASS_0925 flavodoxin K03839 fldA; flavodoxin I C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism C 99986 Glycan metabolism C 99987 Cofactor metabolism C 99988 Secondary metabolism C 99999 Others B B 09192 Unclassified: genetic information processing C 99973 Transcription D TPASS_0924 tex; protein Tex K06959 tex; protein Tex C 99974 Translation C 99975 Protein processing D TPASS_0506 tig; trigger factor K03545 tig; trigger factor D TPASS_0184 smpB; small protein B K03664 smpB; SsrA-binding protein C 99976 Replication and repair D TPASS_0913 hypothetical protein K07460 yraN; putative endonuclease D TPASS_0393 smf; protein Smf K04096 smf; DNA processing protein C 99979 Viral proteins C 99998 Others B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D TPASS_0106 possible carnitine transporter K03451 TC.BCT; betaine/carnitine transporter, BCCT family D TPASS_0023 sodium- and chloride- dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D TPASS_0998 sodium/proton-dependent alanine transporter K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D TPASS_0414 dagA; D-alanine glycine permease K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D TPASS_0265 braC; amino acid ABC transporter, permease protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family C 99978 Cell growth D TPASS_0948 jag; spoIIIJ-associated protein K06346 jag; spoIIIJ-associated protein D TPASS_0288 spsF; spore coat polysaccharide biosynthesis protein F K07257 spsF; spore coat polysaccharide biosynthesis protein SpsF C 99993 Cell motility C 99995 Signaling proteins C 99992 Structural proteins C 99994 Others B B 09194 Poorly characterized C 99996 General function prediction only D TPASS_0522 hypothetical protein K03558 cvpA; membrane protein required for colicin V production D TPASS_1033 hypothetical protein K07001 K07001; NTE family protein D TPASS_0158 hypothetical protein K07025 K07025; putative hydrolase of the HAD superfamily D TPASS_0407 gph1; phosphoglycolate phosphatase K07025 K07025; putative hydrolase of the HAD superfamily D TPASS_0612 hypothetical protein K09014 sufB; Fe-S cluster assembly protein SufB D TPASS_0613 hypothetical protein K09015 sufD; Fe-S cluster assembly protein SufD D TPASS_0571 protein Tp70 K03744 lemA; LemA protein D TPASS_0312 hypothetical protein K08974 K08974; putative membrane protein D TPASS_0570 hypothetical protein K08988 K08988; putative membrane protein C 99997 Function unknown D TPASS_0835 possible ankyrin K06867 K06867; uncharacterized protein D TPASS_0502 hypothetical protein K06867 K06867; uncharacterized protein D TPASS_0561 hypothetical protein K06872 K06872; uncharacterized protein D TPASS_0906 hypothetical protein K06960 K06960; uncharacterized protein D TPASS_0815 hypothetical protein K06976 K06976; uncharacterized protein D TPASS_0790 possible antibiotic transport protein K07003 K07003; uncharacterized protein D TPASS_0544 hypothetical protein K07004 K07004; uncharacterized protein D TPASS_0038 pfoS_R; regulatory protein PfoS/R K07035 K07035; uncharacterized protein D TPASS_0937 hypothetical protein K07095 K07095; uncharacterized protein D TPASS_0050 hypothetical protein K07101 K07101; uncharacterized protein D TPASS_0494 hypothetical protein K07164 K07164; uncharacterized protein D TPASS_0087 hypothetical protein K09005 K09005; uncharacterized protein D TPASS_0710 hypothetical protein K09749 K09749; uncharacterized protein D TPASS_0829 hypothetical protein K09766 K09766; uncharacterized protein D TPASS_0845 hypothetical protein K09768 K09768; uncharacterized protein D TPASS_0153 hypothetical protein K09775 K09775; uncharacterized protein D TPASS_0565 hypothetical protein K09795 K09795; uncharacterized protein D TPASS_0744 hypothetical protein K07584 ysxB; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 10, 2024