+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Thalassiosira pseudonana

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs D THAPSDRAFT_9442 predicted protein K14563 NOP1; rRNA 2'-O-methyltransferase fibrillarin [EC:2.1.1.-] D THAPSDRAFT_31516 predicted protein K14564 NOP56; nucleolar protein 56 D THAPSDRAFT_22635 SAR DNA-binding protein K14565 NOP58; nucleolar protein 58 D THAPSDRAFT_28570 L7Ae; L7Ae, ribosomal protein 7Ae 60S large ribosomal subunit K12845 SNU13; U4/U6 small nuclear ribonucleoprotein SNU13 C Box H/ACA snoRNPs D THAPSDRAFT_508 hypothetical protein K11131 DKC1; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-] D THAPSDRAFT_22276 predicted protein K11128 GAR1; H/ACA ribonucleoprotein complex subunit 1 D THAPSDRAFT_37442 predicted protein K11129 NHP2; H/ACA ribonucleoprotein complex subunit 2 D THAPSDRAFT_42169 predicted protein K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3 D THAPSDRAFT_6165 predicted protein K14764 SHQ1; protein SHQ1 B 90S particles C U3 small nucleolar RNA-associated proteins D THAPS_41419 RT4; RT4, ribosomal protein 4, mitochondrial large ribosomal subunit K14560 IMP3; U3 small nucleolar ribonucleoprotein protein IMP3 D THAPSDRAFT_30454 predicted protein K14561 IMP4; U3 small nucleolar ribonucleoprotein protein IMP4 D THAPSDRAFT_bd1667 predicted protein K14559 MPP10; U3 small nucleolar RNA-associated protein MPP10 D THAPSDRAFT_268543 hypothetical protein K14765 NGDN; U3 small nucleolar ribonucleoprotein protein LCP5 D THAPS_23337 predicted protein K14545 RRP7; ribosomal RNA-processing protein 7 D THAPSDRAFT_268331 WD40-repeat protein K14558 PWP2; periodic tryptophan protein 2 D THAPSDRAFT_11949 predicted protein K14766 NOP14; nucleolar protein 14 D THAPSDRAFT_24907 predicted protein K14767 UTP3; U3 small nucleolar RNA-associated protein 3 D THAPSDRAFT_268130 hypothetical protein K14548 UTP4; U3 small nucleolar RNA-associated protein 4 D THAPSDRAFT_25120 predicted protein K14557 UTP6; U3 small nucleolar RNA-associated protein 6 D THAPSDRAFT_38662 predicted protein K14768 UTP7; U3 small nucleolar RNA-associated protein 7 D THAPSDRAFT_30550 predicted protein K14769 UTP11; U3 small nucleolar RNA-associated protein 11 D THAPSDRAFT_34596 predicted protein K14556 DIP2; U3 small nucleolar RNA-associated protein 12 D THAPSDRAFT_268735 GPB1; heterotrimeric G protein beta subunit 1 K14555 UTP13; U3 small nucleolar RNA-associated protein 13 D THAPSDRAFT_269030 WD40-repeat protein K14549 UTP15; U3 small nucleolar RNA-associated protein 15 D THAPSDRAFT_268596 hypothetical protein K14771 NOC4; U3 small nucleolar RNA-associated protein 19 D THAPSDRAFT_268455 hypothetical protein K14772 UTP20; U3 small nucleolar RNA-associated protein 20 D THAPSDRAFT_268252 WD40-repeat protein K14554 UTP21; U3 small nucleolar RNA-associated protein 21 D THAPSDRAFT_25869 predicted protein K14544 UTP22; U3 small nucleolar RNA-associated protein 22 D THAPSDRAFT_24904 predicted protein K14773 UTP23; U3 small nucleolar RNA-associated protein 23 D THAPSDRAFT_36979 predicted protein K14566 UTP24; U3 small nucleolar RNA-associated protein 24 D THAPSDRAFT_269776 hypothetical protein K14775 UTP30; ribosome biogenesis protein UTP30 C Helicases D THAPSDRAFT_32736 predicted protein K14776 DDX10; ATP-dependent RNA helicase DDX10/DBP4 [EC:5.6.2.7] D THAPSDRAFT_39953 atp-dependent RNA helicase K13179 DDX18; ATP-dependent RNA helicase DDX18/HAS1 [EC:5.6.2.7] D THAPSDRAFT_14597 atp-depedent helicase K14777 DDX47; ATP-dependent RNA helicase DDX47/RRP3 [EC:5.6.2.7] D THAPSDRAFT_33252 predicted protein K14779 DDX52; ATP-dependent RNA helicase DDX52/ROK1 [EC:5.6.2.7] D THAPSDRAFT_42282 RNA helicase K12820 DHX15; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:5.6.2.6] D THAPSDRAFT_354 predicted protein K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] C GTPase D THAPSDRAFT_33425 uncharacterized protein K14569 BMS1; ribosome biogenesis protein BMS1 C RNase D THAPSDRAFT_17654 predicted protein K18327 REXO4; RNA exonuclease 4 [EC:3.1.-.-] D THAPSDRAFT_31132 predicted protein K18328 DBR1; lariat debranching enzyme [EC:3.1.-.-] C Kinase D THAPSDRAFT_39539 hypothetical protein K03097 CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1] D THAPSDRAFT_38011 predicted protein K03097 CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1] D THAPSDRAFT_17208 predicted protein K03115 CSNK2B; casein kinase II subunit beta D THAPSDRAFT_17468 predicted protein K03115 CSNK2B; casein kinase II subunit beta C Other 90S particles D THAPSDRAFT_36986 predicted protein K14568 EMG1; rRNA small subunit pseudouridine methyltransferase Nep1 [EC:2.1.1.260] D THAPSDRAFT_34413 predicted protein K14785 ESF2; ESF2/ABP1 family protein D THAPSDRAFT_5294 predicted protein K14786 KRI1; protein KRI1 D THAPSDRAFT_268598 hypothetical protein K06961 KRR1; ribosomal RNA assembly protein D THAPSDRAFT_268689 potential RNA bindin g protein K14787 MRD1; multiple RNA-binding domain-containing protein 1 D THAPSDRAFT_40871 predicted protein K14521 NAT10; N-acetyltransferase 10 [EC:2.3.1.-] D THAPSDRAFT_12971 predicted protein K14788 NOL10; ribosome biogenesis protein ENP2 D THAPSDRAFT_20583 predicted protein K11135 PINX1; Pin2-interacting protein X1 D THAPSDRAFT_21973 predicted protein K11135 PINX1; Pin2-interacting protein X1 D THAPS_38143 predicted protein K14791 PWP1; periodic tryptophan protein 1 D THAPSDRAFT_29705 predicted protein K11108 RCL1; RNA 3'-terminal phosphate cyclase-like protein D THAPSDRAFT_37965 predicted protein K14792 RRP5; rRNA biogenesis protein RRP5 D THAPSDRAFT_40341 U3 snornp-associated 55-kda protein K14793 RRP9; ribosomal RNA-processing protein 9 D THAPSDRAFT_21602 predicted protein K14794 RRP12; ribosomal RNA-processing protein 12 D THAPSDRAFT_269352 hypothetical protein K11806 DCAF13; DDB1- and CUL4-associated factor 13 B Pre-40S particles C Kinases D THAPSDRAFT_31710 predicted protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D THAPSDRAFT_40089 predicted protein K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1] C Export and cytoplasmic maturation factors D THAPSDRAFT_28300 dimethyladenosine transferase K14191 DIM1; 18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase [EC:2.1.1.183] D THAPSDRAFT_17145 predicted protein K19306 BUD23; 18S rRNA (guanine1575-N7)-methyltransferase [EC:2.1.1.309] D THAPSDRAFT_36249 predicted protein K24418 METTL5; rRNA N6-adenosine-methyltransferase METTL5 D THAPSDRAFT_30833 predicted protein K14797 ENP1; essential nuclear protein 1 D THAPSDRAFT_25484 predicted protein K14798 LTV1; protein LTV1 D THAPS_7265 predicted protein K11883 NOB1; RNA-binding protein NOB1 D THAPSDRAFT_35041 predicted protein K11884 PNO1; RNA-binding protein PNO1 D THAPSDRAFT_39470 ran-type small G protein K07936 RAN; GTP-binding nuclear protein Ran D THAPSDRAFT_669 ran small GTPase K07936 RAN; GTP-binding nuclear protein Ran D THAPSDRAFT_32766 hypothetical protein K18532 AK6; adenylate kinase [EC:2.7.4.3] D THAPSDRAFT_24590 predicted protein K14799 TSR1; pre-rRNA-processing protein TSR1 D THAPSDRAFT_24777 predicted protein K14800 TSR2; pre-rRNA-processing protein TSR2 D THAPSDRAFT_32295 predicted protein K09140 TSR3; rRNA small subunit aminocarboxypropyltransferase [EC:2.5.1.157] D THAPSDRAFT_268616 exportin1 K14290 XPO1; exportin-1 D THAPSDRAFT_12810 importin beta-1 subunit-like protein K14293 KPNB1; importin subunit beta-1 D THAPSDRAFT_262326 ran binding protein 4-like protein K20221 IPO4; importin-4 D THAPSDRAFT_268746 ran binding protein 7 K20223 IPO7; importin-7 C Other pre-40S particles D THAPSDRAFT_26702 hypothetical protein K14802 DRS2; phospholipid-transporting ATPase [EC:7.6.2.1] D THAPSDRAFT_21475 predicted protein K03245 EIF3J; translation initiation factor 3 subunit J D THAPSDRAFT_bd1652 ABC-transporter family protein K06174 ABCE1; ATP-binding cassette, sub-family E, member 1 B Pre-60S particles C Helicases D THAPSDRAFT_42515 atp-dependent RNA helicase K12823 DDX5; ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7] D THAPSDRAFT_31037 predicted protein K12823 DDX5; ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7] D THAPSDRAFT_39953 atp-dependent RNA helicase K13179 DDX18; ATP-dependent RNA helicase DDX18/HAS1 [EC:5.6.2.7] D THAPSDRAFT_13254 RNA helicase K16911 DDX21; ATP-dependent RNA helicase DDX21 [EC:5.6.2.7] D THAPSDRAFT_42599 predicted protein K14805 DDX24; ATP-dependent RNA helicase DDX24/MAK5 [EC:5.6.2.7] D THAPSDRAFT_13578 predicted protein K13181 DDX27; ATP-dependent RNA helicase DDX27 [EC:5.6.2.7] D THAPSDRAFT_24712 predicted protein K14806 DDX31; ATP-dependent RNA helicase DDX31/DBP7 [EC:5.6.2.7] D THAPSDRAFT_40402 atp-dependent RNA helicase K14807 DDX51; ATP-dependent RNA helicase DDX51/DBP6 [EC:5.6.2.7] D THAPSDRAFT_14109 predicted protein K14808 DDX54; ATP-dependent RNA helicase DDX54/DBP10 [EC:5.6.2.7] D THAPSDRAFT_34027 predicted protein K14809 DDX55; ATP-dependent RNA helicase DDX55/SPB4 [EC:5.6.2.7] D THAPSDRAFT_262722 dead-box RNA helicase K14810 DDX56; ATP-dependent RNA helicase DDX56/DBP9 [EC:5.6.2.7] D THAPSDRAFT_32807 atp-dependent RNA helicase K14811 DBP3; ATP-dependent RNA helicase DBP3 [EC:5.6.2.7] D THAPSDRAFT_34661 helicase K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] C GTPases D THAPSDRAFT_40985 predicted protein K14538 NUG1; nuclear GTP-binding protein D THAPSDRAFT_34729 predicted protein K14537 NUG2; nuclear GTP-binding protein D THAPSDRAFT_268559 nucleolar gtp-binding protein 1 K06943 NOG1; nucleolar GTP-binding protein D THAPSDRAFT_17657 predicted protein K14539 LSG1; large subunit GTPase 1 [EC:3.6.1.-] D THAPSDRAFT_23179 predicted protein K14536 RIA1; ribosome assembly protein 1 [EC:3.6.5.-] C RNases D THAPSDRAFT_24849 predicted protein K14570 REX1; RNA exonuclease [EC:3.1.-.-] D THAPSDRAFT_31404 predicted protein K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] D THAPSDRAFT_20800 predicted protein K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] D RNase MRP E THAPSDRAFT_900 predicted protein K01164 POP1; ribonuclease P/MRP protein subunit POP1 [EC:3.1.26.5] E THAPSDRAFT_5241 predicted protein K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5] C Kinases D THAPSDRAFT_34412 predicted protein K06947 GRC3; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 [EC:2.7.1.-] C Export and cytoplasmic maturation factors D THAPSDRAFT_270120 ABC transporter K06185 ABCF2; ATP-binding cassette, subfamily F, member 2 D THAPSDRAFT_39286 ABC transporter K06185 ABCF2; ATP-binding cassette, subfamily F, member 2 D THAPSDRAFT_29782 eIF6; eukaryotic translation initiation factor 6 K03264 EIF6; translation initiation factor 6 D THAPSDRAFT_269120 hsp70; heat shock protein 70 K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8 D THAPSDRAFT_261109 HSP70 domain-containing protein K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8 D THAPSDRAFT_28189 HSP70_3; heat shock protein, HSP70, hsc70 K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8 D THAPSDRAFT_42594 predicted protein K14815 MRT4; mRNA turnover protein 4 D THAPS_29018 nonsense mediated decay protein 3-like protein K07562 NMD3; 60S ribosomal export protein NMD3 D THAPSDRAFT_39470 ran-type small G protein K07936 RAN; GTP-binding nuclear protein Ran D THAPSDRAFT_669 ran small GTPase K07936 RAN; GTP-binding nuclear protein Ran D THAPSDRAFT_22203 predicted protein K14816 REI1; pre-60S factor REI1 D THAPSDRAFT_40265 predicted protein K14574 SDO1; ribosome maturation protein SDO1 D THAPSDRAFT_268616 exportin1 K14290 XPO1; exportin-1 D THAPSDRAFT_12810 importin beta-1 subunit-like protein K14293 KPNB1; importin subunit beta-1 D THAPSDRAFT_262326 ran binding protein 4-like protein K20221 IPO4; importin-4 D THAPSDRAFT_268746 ran binding protein 7 K20223 IPO7; importin-7 D THAPSDRAFT_5799 predicted protein K14819 DUSP12; dual specificity phosphatase 12 [EC:3.1.3.16 3.1.3.48] C 5-FMC complex D THAPSDRAFT_22482 predicted protein K14827 IPI1; pre-rRNA-processing protein IPI1 D THAPSDRAFT_5666 predicted protein K16912 LAS1; ribosomal biogenesis protein LAS1 C Ribosome quality control proteins D THAPSDRAFT_267952 hypothetical protein K13525 VCP; transitional endoplasmic reticulum ATPase D THAPSDRAFT_2409 predicted protein K14015 NPLOC4; nuclear protein localization protein 4 D THAPSDRAFT_16926 predicted protein K14016 UFD1; ubiquitin fusion degradation protein 1 D THAPSDRAFT_22140 predicted protein K14016 UFD1; ubiquitin fusion degradation protein 1 D THAPSDRAFT_25110 predicted protein K26089 ANKZF1; ankyrin repeat and zinc finger domain-containing protein 1 C Other pre-60S particles D THAPSDRAFT_33589 predicted protein K14820 BRX1; ribosome biogenesis protein BRX1 D THAPSDRAFT_34826 predicted protein K14821 BUD20; bud site selection protein 20 D THAPSDRAFT_24016 hypothetical protein K14823 EBP2; rRNA-processing protein EBP2 D THAPSDRAFT_38776 predicted protein K14824 ERB1; ribosome biogenesis protein ERB1 D THAPSDRAFT_268145 hypothetical protein K14831 MAK16; protein MAK16 D THAPSDRAFT_20985 predicted protein K14832 MAK21; ribosome biogenesis protein MAK21 D THAPSDRAFT_12982 predicted protein K14572 MDN1; midasin D THAPSDRAFT_39003 predicted protein K07565 NIP7; 60S ribosome subunit biogenesis protein NIP7 D THAPSDRAFT_32158 predicted protein K14834 NOC3; nucleolar complex protein 3 D THAPSDRAFT_34006 predicted protein K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase [EC:2.1.1.310] D THAPSDRAFT_261885 rna-binding protein K14837 NOP12; nucleolar protein 12 D THAPSDRAFT_18198 predicted protein K14838 NOP15; nucleolar protein 15 D THAPSDRAFT_21553 predicted protein K14839 NOP16; nucleolar protein 16 D THAPSDRAFT_20658 predicted protein K14840 NOP53; nucleolar protein 53 D THAPSDRAFT_262018 hypothetical protein K14841 NSA1; ribosome biogenesis protein NSA1 D THAPSDRAFT_28755 predicted protein K14842 NSA2; ribosome biogenesis protein NSA2 D THAPSDRAFT_34881 predicted protein K14843 PES1; pescadillo D THAPS_23354 RNA-binding protein of the pumilio family K14844 PUF6; pumilio homology domain family member 6 D THAPS_38143 predicted protein K14791 PWP1; periodic tryptophan protein 1 D THAPSDRAFT_21082 predicted protein K16914 RIOX1; protein-L-histidine (3S)-3-hydroxylase / [histone H3]-trimethyl-L-lysine4/36 demethylase [EC:1.14.11.79 1.14.11.67 1.14.11.69] D THAPSDRAFT_37748 nuclear vcp-like-like protein K14571 RIX7; ribosome biogenesis ATPase D THAPSDRAFT_31465 hypothetical protein K14846 RPF1; ribosome production factor 1 D THAPSDRAFT_21725 predicted protein K14847 RPF2; ribosome production factor 2 D THAPSDRAFT_39022 WD repeat protein K14848 RRB1; ribosome assembly protein RRB1 D THAPSDRAFT_34176 predicted protein K14850 RRP8; ribosomal RNA-processing protein 8 [EC:2.1.1.287] D THAPSDRAFT_21602 predicted protein K14794 RRP12; ribosomal RNA-processing protein 12 D THAPSDRAFT_bd1807 predicted protein K14852 RRS1; regulator of ribosome biosynthesis D THAPSDRAFT_42152 hypothetical protein K14855 RSA4; ribosome assembly protein 4 D THAPSDRAFT_23187 hypothetical protein K14856 SDA1; protein SDA1 D THAPSDRAFT_17292 predicted protein K14857 SPB1; AdoMet-dependent rRNA methyltransferase SPB1 [EC:2.1.1.-] D THAPSDRAFT_31047 predicted protein K14859 SSF1_2; ribosome biogenesis protein SSF1/2 D THAPSDRAFT_24445 predicted protein K14861 URB1; nucleolar pre-ribosomal-associated protein 1 D THAPSDRAFT_22985 predicted protein K14863 WDR12; ribosome biogenesis protein D THAPSDRAFT_24495 predicted protein K23309 ZNHIT3; zinc finger HIT domain-containing protein 3 B Other ribosome biogenesis factors C THAPSDRAFT_23079 predicted protein K15263 LYER; cell growth-regulating nucleolar protein C THAPSDRAFT_22417 predicted protein K15264 NSUN5; 25S rRNA (cytosine2278-C5)-methyltransferase [EC:2.1.1.311] C THAPSDRAFT_264345 ribose methyltransferase K15507 MRM1; 21S rRNA (GM2251-2'-O)-methyltransferase [EC:2.1.1.-] C THAPSDRAFT_269091 gtp-binding protein K03595 era; GTPase C THAPSDRAFT_34044 DNA-binding protein K26736 PA2G4; ERBB-3 binding protein C THAPSDRAFT_17110 predicted protein K19828 MTG1; mitochondrial GTPase 1 # AProkaryotic type B Sno RNPs C Box C/D snoRNPs D THAPSDRAFT_31516 predicted protein K14564 NOP56; nucleolar protein 56 D THAPS_269961 predicted protein K02936 RP-L7Ae; large subunit ribosomal protein L7Ae C Box H/ACA snoRNPs D THAPSDRAFT_508 hypothetical protein K11131 DKC1; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-] D THAPSDRAFT_42169 predicted protein K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3 B rRNA transcription factors B rRNA modification factors C 16S rRNA modification factors C 23S rRNA modification factors B ribosomal protein modification factors B rRNA processing factors B rRNA helicases B GTPases C THAPSDRAFT_269091 gtp-binding protein K03595 era; GTPase C THAPSDRAFT_42307 predicted protein K03665 hflX; GTPase B Other maturation factors C THAPSDRAFT_268744 predicted protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C THAPSDRAFT_39710 predicted protein K06942 ychF; ribosome-binding ATPase C THAPSDRAFT_21326 predicted protein K06942 ychF; ribosome-binding ATPase # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024