+F Repair protein KO #

  DNA Repair and Recombination Proteins - Theileria parva

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D TP01_0582 RNA helicase K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4] C BER (base exicision repair) D DNA glycosylases E TP02_0373 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E TP01_0968 8-oxoguanine DNA-glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] E TP03_0162 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E TP02_0334 apurinic/apyrimidinic endonuclease K10771 APEX1; AP endonuclease 1 [EC:3.1.11.2] D Long Patch-BER factors E DNA polymerase delta complex F TP01_0899 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7] F TP02_0469 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2 E DNA polymerase epsilon complex F TP04_0813 DNA polymerase epsilon, catalytic subunit A K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7] F TP04_0814 DNA polymerase epsilon, catalytic subunit A K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7] F TP02_0276 hypothetical protein K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7] E TP03_0445 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen E TP02_0600 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen E TP02_0912 flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] E TP03_0549 DNA ligase I K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D Short Patch-BER factors D Other BER factors E TP01_0091 hypothetical protein K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78] C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex F TP01_0871 DNA repair protein Rad23 K10839 RAD23; UV excision repair protein RAD23 E Cul4-DDB2 complex F TP04_0669 hypothetical protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32] F TP01_0243 hypothetical protein K10610 DDB1; DNA damage-binding protein 1 E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex F TP03_0185 DNA-directed RNA polymerase II largest subunit K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] F TP04_0340 DNA-directed RNA polymerase II subunit K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] F TP01_0029 DNA-directed RNA polymerase II K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 F TP02_0359 DNA-directed RNA polymerase II subunit Rpb4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 F TP04_0911 DNA-directed RNA polymerase II K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 F TP04_0461 hypothetical protein K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 F TP01_0225 DNA-directed RNA polymerase II subunit Rpb7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 F TP01_0233 RNA polymerase subunit K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 F TP02_0205 DNA-directed RNA polymerase II subunit K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 F TP02_0237 DNA-directed RNA polymerase subunit N K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 F TP03_0027 DNA-directed RNA polymerase II K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 F TP03_0016 transcription activator K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 E Cul4-CSA complex F TP04_0669 hypothetical protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32] F TP01_0243 hypothetical protein K10610 DDB1; DNA damage-binding protein 1 E Other TCR factor F TP04_0027 ATP-dependant helicase K10841 ERCC6; DNA excision repair protein ERCC-6 F TP03_0547 hypothetical protein K25829 ELOF1; transcription elongation factor 1 D TFIIH complex E TP02_0144 DNA helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] E TP01_0155 DNA repair protein Rad3 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] E TP03_0481 hypothetical protein K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 E TP04_0823 hypothetical protein K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 E TP01_0989 hypothetical protein K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 E TP03_0115 hypothetical protein K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit E TP01_0781 cyclin-dependent kinase K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] E TP04_0577 cyclin K06634 CCNH; cyclin H E TP02_0520 hypothetical protein K10842 MNAT1; CDK-activating kinase assembly factor MAT1 D RPA (replication factor A) E TP02_0095 replication factor A protein K07466 RFA1; replication factor A1 E TP02_0022 hypothetical protein K10739 RFA2; replication factor A2 D Other NER factors E TP01_0997 hypothetical protein K10849 ERCC1; DNA excision repair protein ERCC-1 E TP03_0395 DNA repair endonuclease K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] E TP04_0530 DNA repair protein Rad2 K10846 ERCC5; DNA excision repair protein ERCC-5 E TP03_0549 DNA ligase I K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] E TP01_0952 hypothetical protein K15075 MET18; DNA repair/transcription protein MET18/MMS19 C MMR (mismatch excision repair) D Mismatch and loop recognition factors E TP01_0456 DNA mismatch repair protein MSH2 K08735 MSH2; DNA mismatch repair protein MSH2 E TP01_0185 DNA repair protein K08737 MSH6; DNA mismatch repair protein MSH6 D MutL homologs E TP01_0756 DNA mismatch repair protein MLH1 K08734 MLH1; DNA mismatch repair protein MLH1 E TP03_0491 DNA mismatch repair protein PMS1 K10858 PMS2; DNA mismatch repair protein PMS2 D DNA polymerase delta complex E TP01_0899 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7] E TP02_0469 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2 D RPA (replication factor A) E TP02_0095 replication factor A protein K07466 RFA1; replication factor A1 E TP02_0022 hypothetical protein K10739 RFA2; replication factor A2 D RFC (replication factor C) E TP03_0565 replication factor C large subunit K10754 RFC1; replication factor C subunit 1 E TP01_0978 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4 E TP03_0432 replication factor C subunit 4 K10755 RFC2_4; replication factor C subunit 2/4 E TP04_0380 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5 E TP01_1062 replication factor C subunit 5 K10756 RFC3_5; replication factor C subunit 3/5 D Other MMR factors E TP03_0445 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen E TP02_0600 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen E TP04_0147 exonuclease I K10746 EXO1; exonuclease 1 [EC:3.1.-.-] E TP03_0549 DNA ligase I K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex E TP04_0621 DNA repair exonuclease K10865 MRE11; double-strand break repair protein MRE11 E TP02_0154 RAD50 DNA repair protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-] D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex E TP04_0621 DNA repair exonuclease K10865 MRE11; double-strand break repair protein MRE11 E TP02_0154 RAD50 DNA repair protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-] D BRCA complex E TP04_0230 DNA repair protein Rad51 K04482 RAD51; DNA repair protein RAD51 D RecA family proteins E TP04_0230 DNA repair protein Rad51 K04482 RAD51; DNA repair protein RAD51 E TP04_0453 hypothetical protein K10880 XRCC3; DNA-repair protein XRCC3 D Rad52 family proteins D Rad54 family proteins E TP01_0805 DNA repair protein Rad54 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-] D RecQ family DNA helicases E TP02_0509 DNA helicase K10901 BLM; bloom syndrome protein [EC:5.6.2.4] D Bloom's syndrome complex (BTR) E TP02_0509 DNA helicase K10901 BLM; bloom syndrome protein [EC:5.6.2.4] E TP03_0692 DNA topoisomerase III K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1] D RPA (replication factor A) E TP02_0095 replication factor A protein K07466 RFA1; replication factor A1 E TP02_0022 hypothetical protein K10739 RFA2; replication factor A2 D Protein phosphatase 4 E TP02_0042 serine/threonine protein phosphatase K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16] E TP02_0594 hypothetical protein K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2 E TP03_0573 hypothetical protein K17491 SMEK; protein phosphatase 4 regulatory subunit 3 D AP-5 complex D SMC5-SMC6 complex E TP04_0500 hypothetical protein K22803 SMC5; structural maintenance of chromosomes protein 5 E TP01_0122 hypothetical protein K22804 SMC6; structural maintenance of chromosomes protein 6 D Other HR factors E TP03_0382 hypothetical protein K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-] E TP04_0298 hypothetical protein K10881 SHFM1; 26 proteasome complex subunit DSS1 E TP02_0917 AAA family ATPase K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-] C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex E TP04_0621 DNA repair exonuclease K10865 MRE11; double-strand break repair protein MRE11 E TP02_0154 RAD50 DNA repair protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-] D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) E TP02_0509 DNA helicase K10901 BLM; bloom syndrome protein [EC:5.6.2.4] E TP03_0692 DNA topoisomerase III K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1] D FANCD2-I complex D Downstream FA components D Other FA pathway factors E TP04_0230 DNA repair protein Rad51 K04482 RAD51; DNA repair protein RAD51 C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others E TP03_0275 hypothetical protein K23314 WRAP53; telomerase Cajal body protein 1 B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D TP02_0924 hypothetical protein K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-] C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group D TP02_0288 ubiquitin-protein ligase K10574 UBE2B; ubiquitin-conjugating enzyme E2 B [EC:2.3.2.23] D TP03_0025 ubiquitin-conjugating enzyme K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant D TP01_0508 ubiquitin-protein ligase K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23] C Other TLS factors D TP03_0445 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen D TP02_0600 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex D TP01_0978 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4 D TP03_0432 replication factor C subunit 4 K10755 RFC2_4; replication factor C subunit 2/4 D TP04_0380 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5 D TP01_1062 replication factor C subunit 5 K10756 RFC3_5; replication factor C subunit 3/5 C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex D TP03_0559 hypothetical protein K23387 GET4; golgi to ER traffic protein 4 C Other check point factors D TP02_0787 hypothetical protein K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1] D TP02_0607 hypothetical protein K06630 YWHAE; 14-3-3 protein epsilon D TP03_0351 vacuolar sorting protein 4 K12196 VPS4; vacuolar protein-sorting-associated protein 4 B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases D TP01_0040 hypothetical protein K17815 EXO5; exonuclease V [EC:3.1.-.-] C Helicases C PSO4 complex D TP03_0215 hypothetical protein K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27] D TP01_1059 hypothetical protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1 D TP02_0698 hypothetical protein K12861 BCAS2; pre-mRNA-splicing factor SPF27 D TP04_0666 hypothetical protein K12862 PLRG1; pleiotropic regulator 1 C Modulation of nucleotide pools D TP01_0381 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D TP03_0528 ribonucleotide-diphosphate reductase large subunit K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1] D TP01_0725 ribonucleotide-diphosphate reductase small subunit K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1] D TP01_1196 ribonucleotide-diphosphate reductase small subunit K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E TP02_0373 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E TP03_0162 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D RecJ D DNA ligase D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F TP05_0028 RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F TP05_0029 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F TP05_0043 DNA-directed RNA polymerase subunit beta'' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F TP05_0042 DNA-directed RNA polymerase subunit beta'' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F TP03_0199 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F TP01_0126 DNA-directed RNA polymerase, subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme D DNA ligase D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins D RecFOR pathway proteins D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F TP02_0771 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F TP01_1125 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway E Facilitator E Supressor F TP04_0501 hypothetical protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D TP01_0381 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024