+E Ribosome biogenesis KO
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Ribosome Biogenesis - Thermocrinis ruber
%
!
AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D THERU_06140 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C THERU_08445 era; GTPase Era K03595 era; GTPase
C THERU_08480 GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C THERU_02235 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor
C THERU_07595 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor
C THERU_07690 transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C THERU_01775 transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
C THERU_07270 transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D THERU_02410 16S rRNA methyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D THERU_07475 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D THERU_00440 16S rRNA methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D THERU_08380 16S rRNA methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D THERU_06575 16S rRNA methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D THERU_04310 16S rRNA methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D THERU_01550 RNA methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D THERU_05790 rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D THERU_07725 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D THERU_01575 50S rRNA methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D THERU_07495 radical SAM protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D THERU_01550 RNA methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D THERU_07685 RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D THERU_05225 RNA pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D THERU_03320 RNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C THERU_03810 alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C THERU_07705 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C THERU_05325 2-methylthioadenine synthetase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C THERU_03970 ribonucleotide-diphosphate reductase subunit beta K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C THERU_06140 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C THERU_00410 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C THERU_02860 Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C THERU_06610 RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C THERU_08445 era; GTPase Era K03595 era; GTPase
C THERU_07930 GTPase Der K03977 engA; GTPase
C THERU_08480 GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
C THERU_03335 GTP-binding protein HflX K03665 hflX; GTPase
B Other maturation factors
C THERU_04130 translation factor Sua5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C THERU_05215 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C THERU_07695 ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
C THERU_00420 hypothetical protein K09710 ybeB; ribosome-associated protein
C THERU_07520 hypothetical protein K07042 ybeY; probable rRNA maturation factor
C THERU_08425 sigma 54 modulation protein/30S ribosomal protein S30EA K05808 hpf; ribosome hibernation promoting factor
C THERU_04575 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
C THERU_01675 hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
!
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 9, 2024