+F Repair protein KO #

  DNA Repair and Recombination Proteins - Thiosulfatimonas sediminis

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D THMIRHAS_09530 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D THMIRHAS_06040 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D THMIRHAS_21600 phrB; deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D THMIRHAS_24110 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E THMIRHAS_03580 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E THMIRHAS_23570 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E THMIRHAS_14540 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D THMIRHAS_18920 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D THMIRHAS_22800 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D THMIRHAS_09530 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D THMIRHAS_06040 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D THMIRHAS_21600 phrB; deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D THMIRHAS_24110 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D THMIRHAS_24090 cryptochrome/photolyase family protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E THMIRHAS_03580 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E THMIRHAS_23570 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E THMIRHAS_23020 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E THMIRHAS_14540 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E THMIRHAS_01300 xthA; exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E THMIRHAS_22590 nfo; putative endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E THMIRHAS_13060 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E THMIRHAS_13160 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E THMIRHAS_00430 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E THMIRHAS_21980 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E THMIRHAS_05810 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B E THMIRHAS_12360 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E THMIRHAS_23490 uvrD; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E THMIRHAS_00430 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E THMIRHAS_13160 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F THMIRHAS_22350 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F THMIRHAS_22340 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F THMIRHAS_22040 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F THMIRHAS_24590 hypothetical protein K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F THMIRHAS_12270 mfd; transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E THMIRHAS_07980 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E THMIRHAS_14440 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E THMIRHAS_13330 hypothetical protein K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E THMIRHAS_13320 hypothetical protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E THMIRHAS_14090 dnaE; DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E THMIRHAS_00020 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E THMIRHAS_05870 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E THMIRHAS_20880 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E THMIRHAS_16310 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E THMIRHAS_02720 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E THMIRHAS_11220 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E THMIRHAS_14040 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E THMIRHAS_19550 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E THMIRHAS_24100 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E THMIRHAS_20180 hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E THMIRHAS_13160 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E THMIRHAS_23490 uvrD; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E THMIRHAS_12470 hypothetical protein K03111 ssb; single-strand DNA-binding protein E THMIRHAS_17080 hypothetical protein K03111 ssb; single-strand DNA-binding protein E THMIRHAS_21950 hypothetical protein K03111 ssb; single-strand DNA-binding protein E THMIRHAS_07560 very short patch repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E THMIRHAS_08150 recA; protein RecA K03553 recA; recombination protein RecA E THMIRHAS_10900 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E THMIRHAS_10910 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E THMIRHAS_10890 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E THMIRHAS_12510 hypothetical protein K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E THMIRHAS_01690 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E THMIRHAS_08150 recA; protein RecA K03553 recA; recombination protein RecA E THMIRHAS_06890 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E THMIRHAS_00040 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E THMIRHAS_24630 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E THMIRHAS_13060 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E THMIRHAS_15000 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E THMIRHAS_20160 recR; recombination protein RecR K06187 recR; recombination protein RecR E THMIRHAS_16180 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E THMIRHAS_10900 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E THMIRHAS_10910 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E THMIRHAS_10890 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E THMIRHAS_19460 ATP-dependent helicase K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E THMIRHAS_19470 ATP-dependent helicase K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E THMIRHAS_17840 cas1-2; CRISPR-associated endonuclease Cas1 2 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F THMIRHAS_13670 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F THMIRHAS_00060 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F THMIRHAS_02530 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F THMIRHAS_17060 hypothetical protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F THMIRHAS_13760 hup; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F THMIRHAS_13060 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F THMIRHAS_15000 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F THMIRHAS_20160 recR; recombination protein RecR K06187 recR; recombination protein RecR F THMIRHAS_13160 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F THMIRHAS_20460 hypothetical protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F THMIRHAS_18130 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F THMIRHAS_13590 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F THMIRHAS_21980 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F THMIRHAS_05810 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B F THMIRHAS_14240 hvrA; DNA-binding protein K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D THMIRHAS_15760 umuC; protein UmuC K03502 umuC; DNA polymerase V D THMIRHAS_05970 SOS (error prone) mutagenesis protein UmuD (RumA) K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D THMIRHAS_08150 recA; protein RecA K03553 recA; recombination protein RecA D THMIRHAS_13200 hypothetical protein K01356 lexA; repressor LexA [EC:3.4.21.88] D THMIRHAS_16180 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D THMIRHAS_12470 hypothetical protein K03111 ssb; single-strand DNA-binding protein D THMIRHAS_17080 hypothetical protein K03111 ssb; single-strand DNA-binding protein D THMIRHAS_21950 hypothetical protein K03111 ssb; single-strand DNA-binding protein D THMIRHAS_08140 hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D THMIRHAS_02660 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D THMIRHAS_17240 hypothetical protein K03658 helD; DNA helicase IV [EC:5.6.2.4] D THMIRHAS_12830 ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D THMIRHAS_18920 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D THMIRHAS_22800 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D THMIRHAS_05660 nrdA; ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D THMIRHAS_05300 nrdB; ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024