+E Transcription factors KO
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Transcription Factors - Trichinella spiralis
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
D Tsp_05339 transcription factor AP-1 K04448 JUN; transcription factor AP-1
D Tsp_05337 transcription factor AP-1 K04448 JUN; transcription factor AP-1
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
D Tsp_05967 basic region leucine zipper family protein K09062 GT; protein giant
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
D Tsp_11731 putative helix-loop-helix DNA-binding domain protein K15603 TCF4_12; transcription factor 4/12
C Myogenic transcription factors
D Tsp_09507 cuticle collagen 1 K18484 MYF5; myogenic factor 5
C Achaete-Scute
D Tsp_11718 achaete-scute protein K09067 ASCL; achaete-scute complex protein
D Tsp_12187 helix-loop-helix protein 4 K09067 ASCL; achaete-scute complex protein
D Tsp_05704 helix-loop-helix protein 6 K09067 ASCL; achaete-scute complex protein
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
D Tsp_05097 heart- and neural crest derivatives-expressed protein 1 K18486 HAND2; heart-and neural crest derivatives-expressed protein 2
D Tsp_00668 pancreas transcription factor 1 subunit alpha K09073 PTF1A; pancreas-specific transcription factor 1a
C Tal/Twist/Atonal/Hen, HEN
D Tsp_00809 helix-loop-helix protein K09075 NHLH; nescient helix-loop-helix protein
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
D Tsp_03932 protein lin-32 K09083 ATOH1_7; atonal protein 1/7
D Tsp_05869 protein atonal protein K09084 ATOH8; atonal protein 8
D Tsp_02491 oligodendrocyte transcription factor 2 K09085 BHLHB1_6_7; class B basic helix-loop-helix protein 1/6/7
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
D Tsp_06034 putative helix-loop-helix DNA-binding domain protein K06054 HES1; hairy and enhancer of split 1
D Tsp_08580 transcription factor HES-2 K09090 HESN; hairy and enhancer of split, invertebrate
C Hairy, Fungal regulators
C Factors with PAS domain
D Tsp_10414 muscle cell intermediate filament protein OV71 K09097 ARNT; aryl hydrocarbon receptor nuclear translocator
D Tsp_01272 putative helix-loop-helix DNA-binding domain protein K02296 ARNTL; aryl hydrocarbon receptor nuclear translocator-like protein 1
C Yabby
C INO
C HLH domain only
D Tsp_00399 DNA-binding protein inhibitor ID-1 K17696 EMC; DNA-binding protein inhibitor ID, other
D Tsp_09969 putative transcription factor COE1 K09103 EBF; early B-cell factor
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
D Tsp_10832 putative helix-loop-helix DNA-binding domain protein K09105 TFE3; transcription factor E3
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
D Tsp_01750 protein WBSCR14-like protein K09113 MLX; MAX-like protein X
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
D Tsp_07936 putative transcription factor RFX3 K09173 RFX1_2_3; regulatory factor X 1/2/3
C AP-2 (bHSH)
D Tsp_09566 transcription factor AP-2 superfamily K09176 TFAP2A_B; transcription factor AP-2 alpha/beta
D Tsp_11744 transcription factor AP-2 alpha K09176 TFAP2A_B; transcription factor AP-2 alpha/beta
B Zinc finger
C Cys4 thyroid hormone receptor-like
D Tsp_09475 putative ligand-binding domain of nuclear hormone receptor K08362 THRB; thyroid hormone receptor beta
D Tsp_09528 nuclear hormone receptor family member nhr-23 K14033 NR1F4; nuclear receptor subfamily 1 group F member 4
D Tsp_00867 ecdysone receptor K14034 NR1H1; ecdysone receptor
C Cys4 hepatocyte nuclear factor 4-like
D Tsp_10110 putative ligand-binding domain of nuclear hormone receptor K07292 NR2A1; hepatocyte nuclear factor 4-alpha
D Tsp_06907 protein tailless K08545 NR2E1; nuclear receptor subfamily 2 group E member 1
D Tsp_06560 photoreceptor-specific nuclear receptor K08546 NR2E3; nuclear receptor subfamily 2 group E member 3
D Tsp_10103 COUP transcription factor 1 K08547 NR2F1; COUP transcription factor 1
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
D Tsp_06402 nuclear receptor subfamily 4 group A member 1 K04465 NR4A1; nuclear receptor subfamily 4 group A member 1
C Cys4 Fushi tarazu-F1-like
D Tsp_04383 putative ligand-binding domain of nuclear hormone receptor K08705 NR5A3; nuclear receptor subfamily 5 group A member 3
C Cys4 germ cell nuclear factor
D Tsp_04327 nuclear hormone receptor family member nhr-91 K09185 NR6AN; nuclear receptor subfamily 6 group A
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
D Tsp_09534 putative ELM2 domain protein K05628 RERE; arginine-glutamic acid dipeptide repeats protein
D Tsp_09343 putative ELM2 domain protein K11660 MTA; metastasis-associated protein MTA
D Tsp_09280 putative PWWP domain protein K17398 DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]
D Tsp_00477a putative immunoglobulin domain protein K10779 ATRX; transcriptional regulator ATRX
C Cys2His2 SP/KLF family and related proteins
D Tsp_09494 zinc finger protein K09195 SP5; transcription factor Sp5
D Tsp_05506 zinc finger protein K09200 SP-N; transcription factor Sp, invertebrate
D Tsp_05538 zinc finger protein K17846 KLF4; krueppel-like factor 4
D Tsp_08261 zinc finger protein K09206 KLF5; krueppel-like factor 5
D Tsp_12288 zinc finger protein K09206 KLF5; krueppel-like factor 5
C Cys2His2 GLI-like
D Tsp_04779 zinc finger protein K16799 CI; transcriptional activator cubitus interruptus
C Cys2His2 Snail
D Tsp_11614 protein escargot K05706 SNAI2; snail 2
D Tsp_09509 transcriptional repressor scratch 2 K09219 SCRT; scratch
D Tsp_07599 insulinoma-associated protein 2 K25795 INSM; insulinoma-associated protein
C Cys2His2 BTB-ZF factors
D Tsp_04005 zinc finger protein K10500 ZBTB17; zinc finger and BTB domain-containing protein 17
C Cys2His2 BED
C Cys2His2 PRDM
D Tsp_11641 putative protein kinase domain protein K24501 PRDM1; PR domain zinc finger protein 1 [EC:2.1.1.-]
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
D Tsp_12917 zinc finger protein K09215 OSR; odd-skipped
D Tsp_03973 protein bowel K09215 OSR; odd-skipped
D Tsp_05962 zinc finger protein K09223 GFI1; growth factor independent 1
D Tsp_03908 zinc finger protein K17452 AEBP2; zinc finger protein AEBP2
D Tsp_06840 zinc finger protein K22045 BCL11A; B-cell lymphoma/leukemia 11A
D Tsp_08847 zinc finger protein K23195 CTCF; transcriptional repressor CTCF
D Tsp_05655 zinc finger protein K24146 BNC; zinc finger protein basonuclin
D Tsp_07124 replication protein ADNA-binding subunit K07466 RFA1; replication factor A1
D Tsp_08212 zinc finger protein K23480 ZNF362_384; zinc finger protein 362/384
D Tsp_08822 zinc finger protein 423-like protein K22870 ZNF423; zinc finger protein 423
D Tsp_02771 zinc finger protein K09228 KRAB; KRAB domain-containing zinc finger protein
D Tsp_05786 Fez family zinc finger protein 2 K24502 FEZF; Fez family zinc finger protein
D Tsp_12536a Fez family zinc finger protein 1 K24502 FEZF; Fez family zinc finger protein
D Tsp_10052 zinc finger protein K25794 HINFP; histone H4 transcription factor
D Tsp_03694 zinc finger protein K09213 HB; hunchback
C Cys2HisCys zinc factors
D Tsp_05668 zinc finger protein K23192 MYT1; myelin transcription factor 1
D Tsp_12324 putative histone acetyltransferase MYST1 K11308 MYST1; histone acetyltransferase MYST1 [EC:2.3.1.48]
D Tsp_06212 putative histone acetyltransferase MYST1 K11308 MYST1; histone acetyltransferase MYST1 [EC:2.3.1.48]
D Tsp_08056 putative histone acetyltransferase MYST1 K11308 MYST1; histone acetyltransferase MYST1 [EC:2.3.1.48]
D Tsp_05023 histone acetyltransferase HTATIP K11304 TIP60; histone acetyltransferase HTATIP [EC:2.3.1.48]
D Tsp_02224 cell growth-regulating nucleolar protein K15263 LYER; cell growth-regulating nucleolar protein
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D Tsp_02372 putative CpG-binding protein K14960 CXXC1; COMPASS component SPP1
C Cys6 metabolic regulators in fungi
C Other zinc fingers
D Tsp_05458 putative hepatocellular carcinoma-associated antigen 127 K24369 ZC4H2; zinc finger C4H2 domain-contaning protein
D Tsp_03430 interferon regulatory factor 2-binding protein 2-B K22383 IRF2BP; interferon regulatory factor 2-binding protein
B Helix-turn-helix
C Homeo domain ANTP: HOXL
D Tsp_00887 homeotic protein labial K09301 HOX_1; homeobox protein HoxA/B/D1
D Tsp_06377 homeobox protein Hox-A4 K09305 HOX_5; homeobox protein HoxA/B/C5
D Tsp_06373 homeobox protein Hox-A7 K09307 HOX_7; homeobox protein HoxA/B7
D Tsp_00888 homeobox protein CDX-1 K09312 CDX1_4; homeobox protein CDX1/4
D Tsp_01337 homeobox even-skipped protein 1 K09320 EVX; homeobox even-skipped homolog protein
D Tsp_01432 homeobox even-skipped protein 1 K09320 EVX; homeobox even-skipped homolog protein
C Homeo domain ANTP: NKL
D Tsp_02063 homeobox protein SAX-1 K09309 NKX1; homeobox protein Nkx-1
D Tsp_02071 homeobox protein SAX-1 K09309 NKX1; homeobox protein Nkx-1
D Tsp_02798 homeobox protein Nkx-2.4 K09342 NKX2-1; homeobox protein Nkx-2.1
D Tsp_06096a homeobox protein Nkx-2.2a K08029 NKX2-2; homeobox protein Nkx-2.2
D Tsp_00358 homeobox protein HMX1 K09349 NKX5; homeobox protein Nkx-5
D Tsp_06645 homeobox protein Nkx-6.2 K08030 NKX6-1; homeobox protein Nkx-6.1
D Tsp_13445 homeobox protein Nkx-6.3 K08030 NKX6-1; homeobox protein Nkx-6.1
D Tsp_05079 T-cell leukemia homeobox protein 3 K15607 TLX3; T-cell leukemia homeobox protein 3
D Tsp_08676 putative homeobox domain protein K09317 EMX; homeobox protein EMX
D Tsp_01901 homeobox protein engrailed-1 K09319 EN; homeobox protein engrailed
D Tsp_06767 homeobox protein ceh-30 K09360 BARHL; BarH-like
D Tsp_06769 putative homeobox domain protein K09360 BARHL; BarH-like
C Homeo domain Paired-related
D Tsp_07961 homeobox protein goosecoid K09324 GSC; homeobox protein goosecoid
D Tsp_07781 homeobox protein OTX2 K18490 OTX2; homeobox protein OTX2
D Tsp_05344 ALX homeobox protein 1 K09328 UNC4; homeobox protein Unc-4
D Tsp_05175 homeobox protein SMOX-3 K09330 PHOX2; paired mesoderm homeobox protein 2
D Tsp_05694 retinal homeobox protein Rax K09332 RAX; retina and anterior neural fold homeobox protein
D Tsp_01482 homeobox protein ceh-10 K09336 VSX2; visual system homeobox protein 2
D Tsp_05813 pituitary homeobox 1 K09356 PITX1; paired-like homeodomain transcription factor 1
D Tsp_08869 paired box protein Pax-9 K09382 PAX1_9; paired box protein 1/9
D Tsp_03504 putative paired box protein Pax-2 K15608 PAX2; paired box protein 2
D Tsp_01075 paired box protein Pax-6 K08031 PAX6; paired box protein 6
C Homeo domain LIM
D Tsp_12493 LIM homeobox transcription factor 1 alpha K09371 LMX1; LIM homeobox transcription factor 1
D Tsp_08446 LIM/homeobox protein Lhx3 K09371 LMX1; LIM homeobox transcription factor 1
D Tsp_11811 LIM/homeobox protein Lhx1 K09372 LHX1; LIM homeobox protein 1
D Tsp_06736 LIM/homeobox protein Lhx9 K09373 LHX2_9; LIM homeobox protein 2/9
D Tsp_03564 LIM/homeobox protein Lhx3 K09374 LHX3_4; LIM homeobox protein 3/4
D Tsp_01053 cysteine and glycine-rich protein 1 K09377 CSRP; cysteine and glycine-rich protein
C Homeo domain POU
D Tsp_01181 POU domain, class 4, transcription factor 1 K09366 POU4F; POU domain transcription factor, class 4
D Tsp_07763 putative homeobox domain protein K24885 HMBOX1; homeobox-containing protein 1
C Homeo domain SINE
D Tsp_07669 homeobox protein SIX2 K19472 SIX2; homeobox protein SIX2
D Tsp_11472 homeobox protein SIX4 K15615 SIX4; homeobox protein SIX4
C Homeo domain ZF
D Tsp_05285 putative homeobox domain protein K09378 ZFHX3; zinc finger homeobox protein 3
D Tsp_07819 zinc finger protein K23560 ZEB2; zinc finger homeobox protein 2
C Homeo domain CUT
D Tsp_02003 putative CUT domain protein K09313 CUTL; homeobox protein cut-like
D Tsp_02017 putative CUT domain protein K09313 CUTL; homeobox protein cut-like
D Tsp_04360 putative CUT domain protein K08026 ONECUT1; one cut domain, family member 1 (hepatocyte nuclear factor 6)
C Homeo domain PROS
D Tsp_11459 hypothetical protein K20211 PROX1; prospero homeobox 1
C Homeo domain TALE
D Tsp_00508 Pre-B-cell leukemia transcription factor 1 K09355 PBX1; pre-B-cell leukemia transcription factor 1
D Tsp_11406 putative iroquois-class homeodomain protein IRX-6 K24889 IRX; iroquois-class homeodomain protein IRX
C Homeo domain other
C Fork head/winged helix developmental regulators
D Tsp_03204 forkhead box protein G1 K09385 FOXG; forkhead box protein G
D Tsp_03011 forkhead box protein N4 K09407 FOXN; forkhead box protein N
C Fork head/winged helix tissue-specific regulators
D Tsp_07495 forkhead box protein J1 K09402 FOXJ1; forkhead box protein J1
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
D Tsp_02025 transcription factor Dp-1 K04683 TFDP1; transcription factor Dp-1
C Fork head/winged helix other regulators
D Tsp_07791 forkhead box protein E1 K09395 FOXB; forkhead box protein B
D Tsp_08854 forkhead box protein D3 K09397 FOXD; forkhead box protein D
D Tsp_09395 forkhead box protein F1 K09399 FOXF; forkhead box protein F
D Tsp_05194 putative fork head domain protein K09404 FOXK; forkhead box protein K
D Tsp_10373 putative fork head domain protein K09408 FOXO3; forkhead box protein O3
D Tsp_03068 forkhead box protein P1 K23582 FOXP1; forkhead box protein P1
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
D Tsp_09093 ETS factor K17102 EHF; ETS homologous factor
D Tsp_02690 ETS domain-containing protein Elk-1 K09430 ELK3; ETS domain-containing protein Elk-3 (SRF accessory protein 2)
D Tsp_13077 protein C-ets-2-B K02678 ETS1; C-ets-1
D Tsp_02297 protein C-ets-1-B K21932 ETS2; C-ets-2
D Tsp_11097 Ets-domain protein K09435 ERG; transcriptional regulator ERG
D Tsp_08802 friend leukemia integration 1 transcription factor K09436 FLI1; friend leukemia integration 1 transcription factor
C Tryptophan clusters interferon-regulating factors
C TEA domain
D Tsp_09605 transcriptional enhancer factor TEF-5 K09448 TEAD; transcriptional enhancer factor
C ARID
D Tsp_09548 cuticle collagen rol-6 K11653 ARID1; AT-rich interactive domain-containing protein 1
D Tsp_05684 protein dead ringer K25856 ARID3; AT-rich interactive domain-containing protein 3
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
D Tsp_03741 putative tetratricopeptide repeat-containing domain protein K09257 NFKBIL2; NF-kappa-B inhibitor-like protein 2
C RHR (Rel homology region) NF-AT
C STAT
D Tsp_04456 signal transducer and activator of transcription 1 K11224 STAT5B; signal transducer and activator of transcription 5B
C p53
D Tsp_05266 putative cellular tumor antigen p53 K04451 TP53; tumor protein p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
D Tsp_03174 serum response factor K04378 SRF; serum response factor
C SAND domain-containing proteins
C TATA-binding proteins
D Tsp_05781 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
D Tsp_11535 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
C HMG SOX
D Tsp_04170 SOX-1 protein K09267 SOX1S; transcription factor SOX1/3/14/21 (SOX group B)
D Tsp_06143 transcription factor SOX-3 K09267 SOX1S; transcription factor SOX1/3/14/21 (SOX group B)
D Tsp_00998 putative HMG box K09269 SOX5_6_13; transcription factor SOX5/6/13 (SOX group D)
D Tsp_03002 hypothetical protein K20225 CIC; capicua transcriptional repressor
C HMG TCF-1
D Tsp_02818 protein pangolin, isoforms A/H/I K04491 TCF7L2; transcription factor 7-like 2
C HMG2-related
D Tsp_07406 FACT complex subunit Ssrp1 K09272 SSRP1; FACT complex subunit SSRP1/POB3
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
D Tsp_11549 putative nuclear transcription factor Y subunit alpha K08064 NFYA; nuclear transcription factor Y, alpha
D Tsp_06063 nuclear transcription factor Y subunit B K08065 NFYB; nuclear transcription Y subunit beta
D Tsp_00857 nuclear transcription factor Y subunit gamma K08066 NFYC; nuclear transcription factor Y, gamma
C Grainyhead
D Tsp_10077 protein grainyhead K09275 TFCP2; transcription factor CP2 and related proteins
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
D Tsp_02078 NDT80 / PhoG like DNA-binding family protein K24768 MYRF; myelin regulatory factor [EC:3.4.-.-]
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
D Tsp_00559 putative bromodomain protein K04498 EP300; E1A/CREB-binding protein [EC:2.3.1.48]
C T-box
D Tsp_02154 T-box protein H15 K10175 TBX1; T-box protein 1
D Tsp_07342 T-box transcription factor TBX2 K10176 TBX2; T-box protein 2
D Tsp_08082 T-box transcription factor TBX20 K10185 TBX20; T-box protein 20
C DMRT
D Tsp_10473 putative DM DNA binding domain protein K19491 DMRT4_5; doublesex- and mab-3-related transcription factor 4/5
C LRRFIP
D Tsp_11882 leucine-rich repeat flightless-interacting protein 2 K26434 LRRFIP; leucine-rich repeat flightless-interacting protein
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
D Tsp_02744 suppressor of hairless protein K06053 RBPSUH; recombining binding protein suppressor of hairless
D Tsp_09335 PurA ssDNA and RNA-binding protein K21772 PURA; transcriptional activator protein Pur-alpha
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AProkaryotic type
B Helix-turn-helix
C AraC family
C LysR family
C DeoR family
C LacI family
C GntR family
C TetR/AcrR family
C Lrp/AsnC family
C LuxR family
C MarR family
C MerR family
C Fur family
C IclR family
C CRP/FNR family
C Rrf2 family
C ArsR family
C XRE family
C PadR family
C Other families
B Ribbon-helix-helix
C CopG family
C Other families
B Other transcription factors
C BglG family
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0