+F Repair protein KO #

  DNA Repair and Recombination Proteins - Caldanaerobacter subterraneus subsp. tengcongensis

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D TTE2519 Ada; Methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E TTE0574 AlkA; 3-Methyladenine DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] E TTE1769 Nth; predicted EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D TTE2249 MutT3; NTP pyrophosphohydrolases including oxidative damage repair enzymes K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TTE1781 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TTE2793 MutT4; NTP pyrophosphohydrolases including oxidative damage repair enzymes K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TTE1384 Dut; dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D TTE2519 Ada; Methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E TTE0077 Uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E TTE0091 Tag; 3-Methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E TTE1769 Nth; predicted EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E TTE2226 XthA; Exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E TTE1276 Nfo; Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E TTE1191 RecJ; Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E TTE2108 RecJ2; Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E TTE0605 Lig; NAD-dependent DNA ligase (contains BRCT domain type II) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E TTE1970 UvrA; Excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A E TTE1971 UvrB; Helicase subunit of the DNA excision repair complex K03702 uvrB; excinuclease ABC subunit B E TTE1966 UvrC; Nuclease subunit of the excinuclease complex K03703 uvrC; excinuclease ABC subunit C E TTE0604 UvrD; Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TTE0605 Lig; NAD-dependent DNA ligase (contains BRCT domain type II) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F TTE2301 RpoB; DNA-directed RNA polymerase beta subunit/140 kD subunit (split gene in Mjan, Mthe, Aful) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F TTE2300 RpoC; DNA-directed RNA polymerase beta subunit/160 kD subunit (split gene in archaea and Syn) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F TTE2263 RpoA; DNA-directed RNA polymerase alpha subunit/40 kD subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F TTE1510 RpoZ; DNA-directed RNA polymerase subunit K/omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F TTE2565 Mfd; Transcription-repair coupling factor - superfamily II helicase K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E TTE1357 MutS2; MutS-like ATPases involved in mismatch repair, family 2 K03555 mutS; DNA mismatch repair protein MutS E TTE1906 MutS3; MutS-like ATPases involved in mismatch repair, family 2 K03555 mutS; DNA mismatch repair protein MutS E TTE1685 MutS-like ATPases involved in mismatch repair, family 1 K07456 mutS2; DNA mismatch repair protein MutS2 E TTE0725 MutS; MutS-like ATPases involved in mismatch repair, family 2 K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E TTE1358 MutL; DNA mismatch repair enzyme (predicted ATPase) K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E TTE1294 XseA; Exonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E TTE1295 XseB; Exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E TTE1818 DnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E TTE1398 PolC; DNA polymerase III alpha subunit, the Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E TTE0002 DnaN; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E TTE0942 HolA; DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E TTE0097 HolB; ATPase involved in DNA replication K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E TTE0039 DnaX; DNA polymerase III, gamma/tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E TTE0605 Lig; NAD-dependent DNA ligase (contains BRCT domain type II) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E TTE0604 UvrD; Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TTE2780 Ssb3; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E TTE2053 Ssb2; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E TTE0489 RecD; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E TTE2109 RecD2; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E TTE1374 RecA; RecA/RadA recombinase K03553 recA; recombination protein RecA E TTE1179 RuvA; Holliday junction resolvasome DNA-binding subunit K03550 ruvA; holliday junction DNA helicase RuvA E TTE1180 RuvB; Holliday junction resolvasome helicase subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E TTE1178 RuvC; Holliday junction resolvasome endonuclease subunit K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E TTE1508 PriA; Primosomal protein N (replication factor Y) - superfamily II helicase K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E TTE0266 SbcC; ATPase involved in DNA repair K03546 sbcC; DNA repair protein SbcC/Rad50 E TTE0265 SbcD; DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E TTE1374 RecA; RecA/RadA recombinase K03553 recA; recombination protein RecA E TTE2325 Sms; predicted ATP-dependent serine protease K04485 radA; DNA repair protein RadA/Sms E TTE0004 RecF; Recombinational DNA repair ATPase K03629 recF; DNA replication and repair protein RecF E TTE1492 RecG; RecG-like helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E TTE1191 RecJ; Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E TTE2108 RecJ2; Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E TTE0976 RecO; Recombinational DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O) E TTE0041 RecR; Recombinational DNA repair protein K06187 recR; recombination protein RecR E TTE1302 RecN; ATPases involved in DNA repair K03631 recN; DNA repair protein RecN (Recombination protein N) E TTE1179 RuvA; Holliday junction resolvasome DNA-binding subunit K03550 ruvA; holliday junction DNA helicase RuvA E TTE1180 RuvB; Holliday junction resolvasome helicase subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E TTE1178 RuvC; Holliday junction resolvasome endonuclease subunit K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E TTE0264 RecB; ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E TTE0263 ATP-dependent nuclease K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E TTE2658 conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E TTE0266 SbcC; ATPase involved in DNA repair K03546 sbcC; DNA repair protein SbcC/Rad50 E TTE0265 SbcD; DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F TTE0011 GyrA; DNA gyrase (topoisomerase II) A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F TTE0010 GyrB; DNA gyrase (topoisomerase II) B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F TTE1449 TopA; Topoisomerase IA K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F TTE2453 HimA; Bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F TTE1191 RecJ; Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F TTE2108 RecJ2; Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F TTE0976 RecO; Recombinational DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O) F TTE0041 RecR; Recombinational DNA repair protein K06187 recR; recombination protein RecR F TTE0605 Lig; NAD-dependent DNA ligase (contains BRCT domain type II) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F TTE1970 UvrA; Excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A F TTE1971 UvrB; Helicase subunit of the DNA excision repair complex K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D TTE0254 DinP; Nucleotidyltransferase/DNA polymerase involved in DNA repair K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D TTE1374 RecA; RecA/RadA recombinase K03553 recA; recombination protein RecA D TTE1302 RecN; ATPases involved in DNA repair K03631 recN; DNA repair protein RecN (Recombination protein N) D TTE2780 Ssb3; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D TTE2053 Ssb2; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D TTE1373 OraA; uncharacterized BCR K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D TTE2516 Pol4; DNA polymerase IV (family X) K02347 polX; DNA polymerase (family X) C DNA helicases C Modulation of nucleotide pools D TTE2249 MutT3; NTP pyrophosphohydrolases including oxidative damage repair enzymes K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TTE1781 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TTE2793 MutT4; NTP pyrophosphohydrolases including oxidative damage repair enzymes K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TTE1384 Dut; dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D TTE2336 NrdA; Ribonucleotide reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others D TTE1391 Exopolyphosphatase-related proteins K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024