+F Repair protein KO
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DNA Repair and Recombination Proteins - Caldanaerobacter subterraneus subsp. tengcongensis
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D TTE2519 Ada; Methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E TTE0574 AlkA; 3-Methyladenine DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E TTE1769 Nth; predicted EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D TTE2249 MutT3; NTP pyrophosphohydrolases including oxidative damage repair enzymes K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D TTE1781 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D TTE2793 MutT4; NTP pyrophosphohydrolases including oxidative damage repair enzymes K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D TTE1384 Dut; dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D TTE2519 Ada; Methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E TTE0077 Uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E TTE0091 Tag; 3-Methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E TTE1769 Nth; predicted EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E TTE2226 XthA; Exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E TTE1276 Nfo; Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D RecJ
E TTE1191 RecJ; Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E TTE2108 RecJ2; Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E TTE0605 Lig; NAD-dependent DNA ligase (contains BRCT domain type II) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E TTE1970 UvrA; Excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A
E TTE1971 UvrB; Helicase subunit of the DNA excision repair complex K03702 uvrB; excinuclease ABC subunit B
E TTE1966 UvrC; Nuclease subunit of the excinuclease complex K03703 uvrC; excinuclease ABC subunit C
E TTE0604 UvrD; Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E TTE0605 Lig; NAD-dependent DNA ligase (contains BRCT domain type II) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F TTE2301 RpoB; DNA-directed RNA polymerase beta subunit/140 kD subunit (split gene in Mjan, Mthe, Aful) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F TTE2300 RpoC; DNA-directed RNA polymerase beta subunit/160 kD subunit (split gene in archaea and Syn) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F TTE2263 RpoA; DNA-directed RNA polymerase alpha subunit/40 kD subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F TTE1510 RpoZ; DNA-directed RNA polymerase subunit K/omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F TTE2565 Mfd; Transcription-repair coupling factor - superfamily II helicase K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E TTE1357 MutS2; MutS-like ATPases involved in mismatch repair, family 2 K03555 mutS; DNA mismatch repair protein MutS
E TTE1906 MutS3; MutS-like ATPases involved in mismatch repair, family 2 K03555 mutS; DNA mismatch repair protein MutS
E TTE1685 MutS-like ATPases involved in mismatch repair, family 1 K07456 mutS2; DNA mismatch repair protein MutS2
E TTE0725 MutS; MutS-like ATPases involved in mismatch repair, family 2 K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E TTE1358 MutL; DNA mismatch repair enzyme (predicted ATPase) K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E TTE1294 XseA; Exonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E TTE1295 XseB; Exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E TTE1818 DnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E TTE1398 PolC; DNA polymerase III alpha subunit, the Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
E TTE0002 DnaN; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E TTE0942 HolA; DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E TTE0097 HolB; ATPase involved in DNA replication K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E TTE0039 DnaX; DNA polymerase III, gamma/tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E TTE0605 Lig; NAD-dependent DNA ligase (contains BRCT domain type II) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E TTE0604 UvrD; Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E TTE2780 Ssb3; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E TTE2053 Ssb2; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E TTE0489 RecD; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E TTE2109 RecD2; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E TTE1374 RecA; RecA/RadA recombinase K03553 recA; recombination protein RecA
E TTE1179 RuvA; Holliday junction resolvasome DNA-binding subunit K03550 ruvA; holliday junction DNA helicase RuvA
E TTE1180 RuvB; Holliday junction resolvasome helicase subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E TTE1178 RuvC; Holliday junction resolvasome endonuclease subunit K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E TTE1508 PriA; Primosomal protein N (replication factor Y) - superfamily II helicase K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E TTE0266 SbcC; ATPase involved in DNA repair K03546 sbcC; DNA repair protein SbcC/Rad50
E TTE0265 SbcD; DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E TTE1374 RecA; RecA/RadA recombinase K03553 recA; recombination protein RecA
E TTE2325 Sms; predicted ATP-dependent serine protease K04485 radA; DNA repair protein RadA/Sms
E TTE0004 RecF; Recombinational DNA repair ATPase K03629 recF; DNA replication and repair protein RecF
E TTE1492 RecG; RecG-like helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E TTE1191 RecJ; Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E TTE2108 RecJ2; Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E TTE0976 RecO; Recombinational DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
E TTE0041 RecR; Recombinational DNA repair protein K06187 recR; recombination protein RecR
E TTE1302 RecN; ATPases involved in DNA repair K03631 recN; DNA repair protein RecN (Recombination protein N)
E TTE1179 RuvA; Holliday junction resolvasome DNA-binding subunit K03550 ruvA; holliday junction DNA helicase RuvA
E TTE1180 RuvB; Holliday junction resolvasome helicase subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E TTE1178 RuvC; Holliday junction resolvasome endonuclease subunit K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
E TTE0264 RecB; ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E TTE0263 ATP-dependent nuclease K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
E TTE2658 conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1
D Archaeal homologous recombinant proteins
E TTE0266 SbcC; ATPase involved in DNA repair K03546 sbcC; DNA repair protein SbcC/Rad50
E TTE0265 SbcD; DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F TTE0011 GyrA; DNA gyrase (topoisomerase II) A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F TTE0010 GyrB; DNA gyrase (topoisomerase II) B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F TTE1449 TopA; Topoisomerase IA K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F TTE2453 HimA; Bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F TTE1191 RecJ; Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F TTE2108 RecJ2; Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F TTE0976 RecO; Recombinational DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
F TTE0041 RecR; Recombinational DNA repair protein K06187 recR; recombination protein RecR
F TTE0605 Lig; NAD-dependent DNA ligase (contains BRCT domain type II) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F TTE1970 UvrA; Excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A
F TTE1971 UvrB; Helicase subunit of the DNA excision repair complex K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D TTE0254 DinP; Nucleotidyltransferase/DNA polymerase involved in DNA repair K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D TTE1374 RecA; RecA/RadA recombinase K03553 recA; recombination protein RecA
D TTE1302 RecN; ATPases involved in DNA repair K03631 recN; DNA repair protein RecN (Recombination protein N)
D TTE2780 Ssb3; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D TTE2053 Ssb2; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D TTE1373 OraA; uncharacterized BCR K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
D TTE2516 Pol4; DNA polymerase IV (family X) K02347 polX; DNA polymerase (family X)
C DNA helicases
C Modulation of nucleotide pools
D TTE2249 MutT3; NTP pyrophosphohydrolases including oxidative damage repair enzymes K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D TTE1781 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D TTE2793 MutT4; NTP pyrophosphohydrolases including oxidative damage repair enzymes K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D TTE1384 Dut; dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D TTE2336 NrdA; Ribonucleotide reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
C Others
D TTE1391 Exopolyphosphatase-related proteins K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024