+D GENES KO #

  KEGG Orthology (KO) - Thermoanaerobacterium thermosaccharolyticum M0795

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:tto00010] D Thethe_01906 transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2] D Thethe_00073 ROK family protein, putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D Thethe_00638 ROK family protein, putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D Thethe_00781 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Thethe_02523 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Thethe_00748 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Thethe_00905 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thethe_02139 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thethe_00906 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thethe_01737 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thethe_02593 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thethe_02041 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Thethe_02043 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Thethe_02042 3-phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Thethe_02040 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Thethe_02039 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Thethe_00749 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Thethe_01157 pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D Thethe_01963 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thethe_00286 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D Thethe_02325 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D Thethe_00485 2-oxoacid:ferredoxin oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Thethe_02644 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Thethe_00486 2-oxoacid:ferredoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Thethe_02645 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Thethe_02460 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D Thethe_02686 alcohol dehydrogenase, class IV K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D Thethe_00467 alcohol dehydrogenase, class IV K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D Thethe_00968 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Thethe_02403 family 4 glycosyl hydrolase, alpha-galactosidase/6-phospho-beta-glucosidase K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86] D Thethe_00652 beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D Thethe_02482 beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D Thethe_00635 beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D Thethe_02474 beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D Thethe_02409 beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D Thethe_02400 PTS system, glucose subfamily, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D Thethe_02310 PTS system IIA component, Glc family K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] C 00020 Citrate cycle (TCA cycle) [PATH:tto00020] D Thethe_02307 aconitate hydratase, putative, Aquifex type K01681 ACO; aconitate hydratase [EC:4.2.1.3] D Thethe_02326 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Thethe_01963 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thethe_00485 2-oxoacid:ferredoxin oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Thethe_02644 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Thethe_00486 2-oxoacid:ferredoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Thethe_02645 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Thethe_00487 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3] D Thethe_00484 NADH:ubiquinone oxidoreductase chain I-like protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3] D Thethe_01662 succinate CoA transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D Thethe_00067 hydro-lyase, Fe-S type, tartrate/fumarate subfamily K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D Thethe_00068 hydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D Thethe_00286 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D Thethe_02325 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] C 00030 Pentose phosphate pathway [PATH:tto00030] D Thethe_00781 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Thethe_01641 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Thethe_02438 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D Thethe_01484 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Thethe_02525 transketolase, alpha subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Thethe_02526 transketolase, beta subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Thethe_01200 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Thethe_02142 transketolase, alpha subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Thethe_02143 transketolase, beta subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Thethe_02592 fructose-6-phosphate aldolase, TalC/MipB family K00616 TALDO1; transaldolase [EC:2.2.1.2] D Thethe_02141 ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D Thethe_02582 ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D Thethe_01152 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D Thethe_01897 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D Thethe_02315 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D Thethe_01691 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D Thethe_00968 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Thethe_00177 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Thethe_02532 2-keto-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D Thethe_01917 Entner-Doudoroff aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D Thethe_01681 hypothetical protein K17463 dgaF; 2-dehydro-3-deoxy-phosphogluconate aldolase [EC:4.1.2.14] D Thethe_02439 pentulose/hexulose kinase K25031 gntK; gluconokinase [EC:2.7.1.12] D Thethe_02531 sugar kinase, ribokinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] D Thethe_01682 putative pyridoxal phosphate-dependent enzyme K17468 dgaE; D-glucosaminate-6-phosphate ammonia-lyase [EC:4.3.1.29] D Thethe_00905 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thethe_02139 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thethe_00906 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thethe_01737 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thethe_02593 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thethe_02523 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Thethe_00748 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C 00040 Pentose and glucuronate interconversions [PATH:tto00040] D Thethe_02435 5-keto 4-deoxyuronate isomerase K01815 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17] D Thethe_02434 2-deoxy-D-gluconate 3-dehydrogenase K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127] D Thethe_02447 family 4 glycosyl hydrolase, alpha-galactosidase/6-phospho-beta-glucosidase K22933 lplD; galacturan 1,4-alpha-galacturonidase [EC:3.2.1.67] D Thethe_02454 glucuronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12] D Thethe_02446 mannitol-1-phosphate/altronate dehydrogenase K00041 uxaB; tagaturonate reductase [EC:1.1.1.58] D Thethe_02445 altronate dehydratase K01685 uxaA; altronate hydrolase [EC:4.2.1.7] D Thethe_00934 D-mannonate dehydratase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8] D Thethe_02437 mannitol-1-phosphate/altronate dehydrogenase K00040 uxuB; fructuronate reductase [EC:1.1.1.57] D Thethe_02441 hypothetical protein K21619 uxaE; tagaturonate epimerase [EC:5.1.2.7] D Thethe_00869 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Thethe_00973 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Thethe_02090 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Thethe_02443 sugar phosphate isomerase/epimerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22] D Thethe_00662 ribulose-5-phosphate 4-epimerase-like epimerase or aldolase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] D Thethe_01484 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Thethe_00660 L-arabinose isomerase K01804 araA; L-arabinose isomerase [EC:5.3.1.4] D Thethe_00661 L-ribulokinase K00853 araB; L-ribulokinase [EC:2.7.1.16] D Thethe_00455 pentulose/hexulose kinase K00854 xylB; xylulokinase [EC:2.7.1.17] D Thethe_02537 D-xylulose kinase K00854 xylB; xylulokinase [EC:2.7.1.17] D Thethe_02133 D-xylulose kinase K00854 xylB; xylulokinase [EC:2.7.1.17] D Thethe_02538 xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5] D Thethe_01735 Zn-dependent alcohol dehydrogenase K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14] C 00051 Fructose and mannose metabolism [PATH:tto00051] D Thethe_00437 sugar kinase, ribokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D Thethe_02026 phosphomannose isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D Thethe_00968 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Thethe_00569 Nucleoside-diphosphate-sugar pyrophosphorylase family protein K16881 K16881; mannose-1-phosphate guanylyltransferase / phosphomannomutase [EC:2.7.7.13 5.4.2.8] D Thethe_00871 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D Thethe_00059 Nucleoside-diphosphate-sugar pyrophosphorylase family protein K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D Thethe_00866 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D Thethe_00868 nucleoside-diphosphate-sugar epimerase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D Thethe_02523 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Thethe_00748 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Thethe_01733 dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein K00068 srlD; sorbitol-6-phosphate 2-dehydrogenase [EC:1.1.1.140] D Thethe_02607 fructose-1-phosphate kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D Thethe_01735 Zn-dependent alcohol dehydrogenase K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14] D Thethe_02538 xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5] D Thethe_00905 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thethe_02139 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thethe_00906 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thethe_01737 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thethe_02593 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thethe_02041 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Thethe_02141 ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D Thethe_02582 ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D Thethe_01704 PTS system IIA component, Fru family K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202] D Thethe_00903 PTS system IIB component, Fru family K02769 fruAb; fructose PTS system EIIB component [EC:2.7.1.202] D Thethe_00904 PTS system unknown substrate IIC component, Fru family K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D Thethe_02605 PTS system D-fructose-specific IICB component (F1P-forming), Frc family K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D Thethe_01742 phosphotransferase system, mannose/fructose-specific component IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D Thethe_01740 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC K02795 manY; mannose PTS system EIIC component D Thethe_01739 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID K02796 manZ; mannose PTS system EIID component D Thethe_01741 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB K02813 sorB; sorbose PTS system EIIB component [EC:2.7.1.206] C 00052 Galactose metabolism [PATH:tto00052] D Thethe_00671 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D Thethe_00670 UTP-hexose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D Thethe_02469 galactose-1-phosphate uridylyltransferase, family 1 K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D Thethe_00672 UDP-glucose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Thethe_00973 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Thethe_02090 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Thethe_00968 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Thethe_01906 transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2] D Thethe_00073 ROK family protein, putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D Thethe_00638 ROK family protein, putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D Thethe_01938 endo-beta-mannanase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D Thethe_01921 phosphotransferase system mannitol/fructose-specifc IIA component (Ntr-type) K02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200] D Thethe_01920 phosphotransferase system, galactitol-specific IIB component K02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200] D Thethe_01919 phosphotransferase system, galactitol-specific IIC component K02775 gatC; galactitol PTS system EIIC component D Thethe_01734 6-phosphofructokinase K00917 lacC; tagatose 6-phosphate kinase [EC:2.7.1.144] D Thethe_01997 1-phosphofructokinase K00917 lacC; tagatose 6-phosphate kinase [EC:2.7.1.144] D Thethe_02523 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Thethe_00748 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Thethe_01998 fructose-1,6-bisphosphate aldolase, class II K08302 gatY-kbaY; tagatose 1,6-diphosphate aldolase GatY/KbaY [EC:4.1.2.40] D Thethe_02524 ketose-bisphosphate aldolase K08302 gatY-kbaY; tagatose 1,6-diphosphate aldolase GatY/KbaY [EC:4.1.2.40] D Thethe_01918 enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase K01684 dgoD; galactonate dehydratase [EC:4.2.1.6] D Thethe_00436 beta-fructofuranosidase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D Thethe_01932 sucrose-6-phosphate hydrolase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D Thethe_00205 family 31 glycosyl hydrolase, alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D Thethe_01931 glycosidase K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10] D Thethe_02003 phosphotransferase system, mannose/fructose-specific component IIA K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-] D Thethe_02006 PTS system, mannose/fructose/sorbose family, IIB component K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-] D Thethe_02005 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC K02746 agaW; N-acetylgalactosamine PTS system EIIC component D Thethe_02004 PTS system, mannose/fructose/sorbose family, IID component K02747 agaE; N-acetylgalactosamine PTS system EIID component D Thethe_01996 putative phosphosugar isomerase K02082 agaS; D-galactosamine 6-phosphate deaminase/isomerase [EC:3.5.99.-] C 00053 Ascorbate and aldarate metabolism [PATH:tto00053] D Thethe_00869 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Thethe_02528 phosphotransferase system, galactitol-specific IIB component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D Thethe_02527 hypothetical protein K03475 ulaA; ascorbate PTS system EIIC component D Thethe_02443 sugar phosphate isomerase/epimerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22] D Thethe_00662 ribulose-5-phosphate 4-epimerase-like epimerase or aldolase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] C 00500 Starch and sucrose metabolism [PATH:tto00500] D Thethe_02399 glucose/maltose/N-acetylglucosamine-specific phosphotransferase system IIC component K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D Thethe_00436 beta-fructofuranosidase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D Thethe_01932 sucrose-6-phosphate hydrolase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D Thethe_00205 family 31 glycosyl hydrolase, alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D Thethe_00973 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Thethe_02090 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Thethe_00913 beta-glucosidase-like glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D Thethe_01826 beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D Thethe_02171 phosphotransferase system cellobiose-specific component IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D Thethe_02407 phosphotransferase system cellobiose-specific component IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D Thethe_02484 phosphotransferase system cellobiose-specific component IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D Thethe_00647 phosphotransferase system cellobiose-specific component IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D Thethe_02478 phosphotransferase system cellobiose-specific component IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D Thethe_02173 phosphotransferase system cellobiose-specific component IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D Thethe_02408 phosphotransferase system cellobiose-specific component IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D Thethe_02483 phosphotransferase system cellobiose-specific component IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D Thethe_00649 phosphotransferase system cellobiose-specific component IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D Thethe_02477 phosphotransferase system cellobiose-specific component IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D Thethe_02172 PTS system, lactose/cellobiose family IIC component K02761 celB; cellobiose PTS system EIIC component D Thethe_00650 phosphotransferase system, cellobiose specific, IIC component K02761 celB; cellobiose PTS system EIIC component D Thethe_02476 PTS system, lactose/cellobiose family IIC component K02761 celB; cellobiose PTS system EIIC component D Thethe_02481 PTS system, lactose/cellobiose family IIC component K02761 celB; cellobiose PTS system EIIC component D Thethe_02403 family 4 glycosyl hydrolase, alpha-galactosidase/6-phospho-beta-glucosidase K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86] D Thethe_00652 beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D Thethe_02482 beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D Thethe_00635 beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D Thethe_02474 beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D Thethe_02409 beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D Thethe_00741 glycosidase K01208 cd; cyclomaltodextrinase / maltogenic alpha-amylase / neopullulanase [EC:3.2.1.54 3.2.1.133 3.2.1.135] D Thethe_00751 glucan 1,4-alpha-glucosidase K01178 SGA1; glucoamylase [EC:3.2.1.3] D Thethe_01931 glycosidase K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10] D Thethe_01909 hypothetical protein K05988 dexA; dextranase [EC:3.2.1.11] D Thethe_02468 uncharacterized protein, probably involved in trehalose biosynthesis K16146 pep2; maltokinase [EC:2.7.1.175] D Thethe_02467 glycogen synthase K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342] D Thethe_02400 PTS system, glucose subfamily, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D Thethe_02310 PTS system IIA component, Glc family K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D Thethe_00968 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Thethe_01906 transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2] D Thethe_00073 ROK family protein, putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D Thethe_00638 ROK family protein, putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D Thethe_00781 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Thethe_00437 sugar kinase, ribokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:tto00520] D Thethe_02400 PTS system, glucose subfamily, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D Thethe_02310 PTS system IIA component, Glc family K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D Thethe_02311 PTS system N-acetylglucosamine-specific IICB component, Glc family K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D Thethe_02290 N-acetylglucosamine 6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D Thethe_02000 N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D Thethe_01621 glucosamine-6-phosphate isomerase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6] D Thethe_00437 sugar kinase, ribokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D Thethe_00491 glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Thethe_00490 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D Thethe_00176 UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D Thethe_02397 N-acetylmuramic acid 6-phosphate etherase K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126] D Thethe_02576 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Thethe_02712 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Thethe_01775 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Thethe_00728 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Thethe_01908 putative N-acetylmannosamine-6-phosphate epimerase K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9] D Thethe_00855 sialic acid synthase K05304 NANS; sialic acid synthase [EC:2.5.1.56 2.5.1.57 2.5.1.132] D Thethe_02578 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D Thethe_00653 alpha-L-arabinofuranosidase K01209 abfA; alpha-L-arabinofuranosidase [EC:3.2.1.55] D Thethe_00657 alpha-L-arabinofuranosidase K01209 abfA; alpha-L-arabinofuranosidase [EC:3.2.1.55] D Thethe_00311 hypothetical protein K01209 abfA; alpha-L-arabinofuranosidase [EC:3.2.1.55] D Thethe_00943 beta-xylosidase K01198 xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37] D Thethe_00942 Glycosyl hydrolase family 52 K22268 xylA; xylan 1,4-beta-xylosidase [EC:3.2.1.37] D Thethe_01906 transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2] D Thethe_00073 ROK family protein, putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D Thethe_00638 ROK family protein, putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D Thethe_00968 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Thethe_00973 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Thethe_02090 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Thethe_00869 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Thethe_00671 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D Thethe_00670 UTP-hexose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D Thethe_02469 galactose-1-phosphate uridylyltransferase, family 1 K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D Thethe_00672 UDP-glucose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Thethe_01742 phosphotransferase system, mannose/fructose-specific component IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D Thethe_01740 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC K02795 manY; mannose PTS system EIIC component D Thethe_01739 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID K02796 manZ; mannose PTS system EIID component D Thethe_00781 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Thethe_02026 phosphomannose isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D Thethe_00569 Nucleoside-diphosphate-sugar pyrophosphorylase family protein K16881 K16881; mannose-1-phosphate guanylyltransferase / phosphomannomutase [EC:2.7.7.13 5.4.2.8] D Thethe_00059 Nucleoside-diphosphate-sugar pyrophosphorylase family protein K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D Thethe_00871 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D Thethe_00866 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D Thethe_00868 nucleoside-diphosphate-sugar epimerase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] C 00620 Pyruvate metabolism [PATH:tto00620] D Thethe_00286 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D Thethe_02325 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D Thethe_00485 2-oxoacid:ferredoxin oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Thethe_02644 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Thethe_00486 2-oxoacid:ferredoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Thethe_02645 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Thethe_01963 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thethe_00063 formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D Thethe_02686 alcohol dehydrogenase, class IV K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D Thethe_00467 alcohol dehydrogenase, class IV K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D Thethe_01467 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Thethe_01468 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Thethe_02120 propanediol utilization protein K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8] D Thethe_00749 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Thethe_02046 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D Thethe_01662 succinate CoA transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D Thethe_02460 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D Thethe_01517 Zn-dependent hydrolase, glyoxylase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D Thethe_01669 hypothetical protein K22373 larA; lactate racemase [EC:5.1.2.1] D Thethe_02491 hypothetical protein K22373 larA; lactate racemase [EC:5.1.2.1] D Thethe_00344 malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D Thethe_01317 pyruvate/oxaloacetate carboxyltransferase K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D Thethe_00067 hydro-lyase, Fe-S type, tartrate/fumarate subfamily K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D Thethe_00068 hydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D Thethe_01157 pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D Thethe_01663 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Thethe_00014 isopropylmalate/homocitrate/citramalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D Thethe_02083 2-isopropylmalate synthase/homocitrate synthase family protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D Thethe_02308 homocitrate synthase NifV K02594 nifV; homocitrate synthase NifV [EC:2.3.3.14] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:tto00630] D Thethe_02307 aconitate hydratase, putative, Aquifex type K01681 ACO; aconitate hydratase [EC:4.2.1.3] D Thethe_01663 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Thethe_01015 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Thethe_01165 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Thethe_00566 glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Thethe_01960 glycine cleavage system protein P K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D Thethe_01961 glycine cleavage system protein P K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D Thethe_01958 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Thethe_01963 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thethe_01959 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Thethe_02636 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D Thethe_02532 2-keto-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D Thethe_01917 Entner-Doudoroff aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D Thethe_02138 dihydrodipicolinate synthase/N-acetylneuraminate lyase K18123 HOGA1; 4-hydroxy-2-oxoglutarate aldolase [EC:4.1.3.16] D Thethe_01640 putative metal-dependent hydrolase K07130 kynB; arylformamidase [EC:3.5.1.9] C 00640 Propanoate metabolism [PATH:tto00640] D Thethe_01467 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Thethe_01468 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Thethe_02120 propanediol utilization protein K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8] D Thethe_01963 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thethe_00063 formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D Thethe_01667 acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D Thethe_02460 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D Thethe_01076 methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3] D Thethe_02127 propanediol dehydratase, large subunit K01699 pduC; propanediol dehydratase large subunit [EC:4.2.1.28] D Thethe_02126 Dehydratase medium subunit K13919 pduD; propanediol dehydratase medium subunit [EC:4.2.1.28] D Thethe_02125 propanediol dehydratase, small subunit K13920 pduE; propanediol dehydratase small subunit [EC:4.2.1.28] D Thethe_02116 NAD-dependent aldehyde dehydrogenase K13922 pduP; propionaldehyde dehydrogenase [EC:1.2.1.87] C 00650 Butanoate metabolism [PATH:tto00650] D Thethe_01663 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Thethe_01664 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D Thethe_01668 enoyl-CoA hydratase/carnithine racemase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17] D Thethe_01667 acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D Thethe_02686 alcohol dehydrogenase, class IV K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D Thethe_00318 acetyl/propionyl-CoA carboxylase, alpha subunit K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma D Thethe_02135 NAD-dependent aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Thethe_01662 succinate CoA transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D Thethe_00063 formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D Thethe_00286 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D Thethe_02325 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D Thethe_00485 2-oxoacid:ferredoxin oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Thethe_02644 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Thethe_00486 2-oxoacid:ferredoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Thethe_02645 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Thethe_00019 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Thethe_00012 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism [PATH:tto00660] D Thethe_00019 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Thethe_00012 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Thethe_00015 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Thethe_00016 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Thethe_00017 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism D Thethe_02041 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:tto00190] D Thethe_01019 NADH dehydrogenase, FAD-containing subunit K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D Thethe_00837 proton translocating ATP synthase, F1 alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D Thethe_00839 ATP synthase, F1 beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D Thethe_00838 ATP synthase, F1 gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D Thethe_00836 ATP synthase, F1 delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D Thethe_00840 ATP synthase, F1 epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D Thethe_00833 F0F1-type ATP synthase, alpha subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Thethe_00835 ATP synthase F0 subcomplex B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Thethe_00834 ATP synthase, F0 subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c D Thethe_00261 inorganic pyrophosphatase/exopolyphosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation by Calvin cycle [PATH:tto00710] D Thethe_02042 3-phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Thethe_02043 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Thethe_00905 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thethe_02139 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thethe_00906 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thethe_01737 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thethe_02593 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thethe_02525 transketolase, alpha subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Thethe_02526 transketolase, beta subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Thethe_01200 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Thethe_02142 transketolase, alpha subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Thethe_02143 transketolase, beta subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Thethe_02141 ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D Thethe_02582 ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D Thethe_02041 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Thethe_01484 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Thethe_02592 fructose-6-phosphate aldolase, TalC/MipB family K00616 TALDO1; transaldolase [EC:2.2.1.2] D Thethe_01157 pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] C 00720 Other carbon fixation pathways [PATH:tto00720] D Thethe_00286 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D Thethe_02325 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D Thethe_01157 pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D Thethe_00067 hydro-lyase, Fe-S type, tartrate/fumarate subfamily K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D Thethe_00068 hydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D Thethe_01663 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Thethe_00485 2-oxoacid:ferredoxin oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Thethe_02644 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Thethe_00486 2-oxoacid:ferredoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Thethe_02645 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Thethe_00487 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3] D Thethe_00484 NADH:ubiquinone oxidoreductase chain I-like protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3] D Thethe_02326 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Thethe_02307 aconitate hydratase, putative, Aquifex type K01681 ACO; aconitate hydratase [EC:4.2.1.3] D Thethe_00313 formyltetrahydrofolate synthetase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D Thethe_01274 5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D Thethe_02322 methenyl tetrahydrofolate cyclohydrolase K01500 fchA; methenyltetrahydrofolate cyclohydrolase [EC:3.5.4.9] D Thethe_00791 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D Thethe_00613 Fe-S-cluster-containing hydrogenase subunit K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit D Thethe_01468 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Thethe_02120 propanediol utilization protein K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8] D Thethe_01467 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00680 Methane metabolism [PATH:tto00680] D Thethe_00613 Fe-S-cluster-containing hydrogenase subunit K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit D Thethe_00566 glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Thethe_02039 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Thethe_00905 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thethe_02139 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thethe_00906 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thethe_01737 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thethe_02593 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Thethe_02523 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Thethe_00748 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Thethe_01467 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Thethe_01468 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Thethe_02040 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Thethe_02634 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Thethe_02137 phosphoglycerate dehydrogenase-like oxidoreductase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Thethe_01322 fructose-2,6-bisphosphatase K22305 psp; phosphoserine phosphatase [EC:3.1.3.3] D Thethe_00622 phosphosulfolactate phosphohydrolase-like enzyme K05979 comB; 2-phosphosulfolactate phosphatase [EC:3.1.3.71] C 00910 Nitrogen metabolism [PATH:tto00910] D Thethe_01853 Mo-nitrogenase MoFe protein subunit NifD precursor K02586 nifD; nitrogenase molybdenum-iron protein alpha chain [EC:1.18.6.1] D Thethe_01576 nitrogenase molybdenum-iron protein, alpha and beta chains K02586 nifD; nitrogenase molybdenum-iron protein alpha chain [EC:1.18.6.1] D Thethe_01583 nitrogenase molybdenum-iron protein, alpha and beta chains K02586 nifD; nitrogenase molybdenum-iron protein alpha chain [EC:1.18.6.1] D Thethe_01575 nitrogenase molybdenum-iron protein, alpha and beta chains K02591 nifK; nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1] D Thethe_01582 nitrogenase molybdenum-iron protein, alpha and beta chains K02591 nifK; nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1] D Thethe_01852 nitrogenase molybdenum-iron protein, alpha and beta chains K02591 nifK; nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1] D Thethe_01584 nitrogenase iron protein K02588 nifH; nitrogenase iron protein NifH D Thethe_01854 Mo-nitrogenase iron protein subunit NifH K02588 nifH; nitrogenase iron protein NifH D Thethe_02688 hydroxylamine reductase K05601 hcp; hydroxylamine reductase [EC:1.7.99.1] D Thethe_00127 2-nitropropane dioxygenase-like enzyme K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D Thethe_01015 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Thethe_01165 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Thethe_01103 NADPH-dependent glutamate synthase, homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Thethe_02236 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] C 00920 Sulfur metabolism [PATH:tto00920] D Thethe_01570 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K15553 ssuA; sulfonate transport system substrate-binding protein D Thethe_01559 ABC transporter, substrate-binding protein, aliphatic sulfonates family K15553 ssuA; sulfonate transport system substrate-binding protein D Thethe_01569 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K15554 ssuC; sulfonate transport system permease protein D Thethe_01557 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K15554 ssuC; sulfonate transport system permease protein D Thethe_01568 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Thethe_01558 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Thethe_01560 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D Thethe_01561 PAPS reductase/FAD synthetase family protein K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D Thethe_01372 exopolyphosphatase-like enzyme K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] D Thethe_01556 thioredoxin-dependent phosophoadenylyl-sulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D Thethe_00925 sulfite reductase, subunit A K16950 asrA; anaerobic sulfite reductase subunit A D Thethe_00135 sulfite reductase, subunit A K16950 asrA; anaerobic sulfite reductase subunit A D Thethe_00926 sulfite reductase, subunit B K16951 asrB; anaerobic sulfite reductase subunit B D Thethe_00134 sulfite reductase, subunit B K16951 asrB; anaerobic sulfite reductase subunit B D Thethe_00927 sulfite reductase, subunit C K00385 asrC; anaerobic sulfite reductase subunit C D Thethe_00133 sulfite reductase, subunit C K00385 asrC; anaerobic sulfite reductase subunit C D Thethe_01567 dissimilatory sulfite reductase (desulfoviridin), alpha/beta subunit K00385 asrC; anaerobic sulfite reductase subunit C D Thethe_00860 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Thethe_00359 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Thethe_01588 cystathionine beta-synthase (acetylserine-dependent) K01738 cysK; cysteine synthase [EC:2.5.1.47] D Thethe_00696 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D Thethe_00691 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:tto00061] D Thethe_01458 acyl carrier protein K02078 acpP; acyl carrier protein D Thethe_01460 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Thethe_01462 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Thethe_01457 beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Thethe_01459 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Thethe_00058 dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Thethe_02556 beta-hydroxyacyl-(acyl carrier protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Thethe_01461 putative enoyl-(acyl-carrier-protein) reductase II K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9] D Thethe_00639 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:tto00071] D Thethe_01663 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Thethe_01667 acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D Thethe_00639 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Thethe_02686 alcohol dehydrogenase, class IV K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D Thethe_00467 alcohol dehydrogenase, class IV K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:tto00561] D Thethe_02636 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D Thethe_00588 dihydroxyacetone kinase DhaK subunit K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121] D Thethe_00589 dihydroxyacetone kinase DhaL subunit K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121] D Thethe_00590 dihydroxyacetone kinase DhaM subunit K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121] D Thethe_01463 fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D Thethe_01751 acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Thethe_00578 putative membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Thethe_02106 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Thethe_01326 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Thethe_00488 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Thethe_01150 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D Thethe_00220 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315] C 00564 Glycerophospholipid metabolism [PATH:tto00564] D Thethe_01750 glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D Thethe_00584 putative dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D Thethe_01751 acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Thethe_00578 putative membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Thethe_02106 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Thethe_01326 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Thethe_00488 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Thethe_01150 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D Thethe_01656 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D Thethe_01384 CDP-diglyceride synthetase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D Thethe_01358 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D Thethe_00990 phosphatidylglycerophosphate synthase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41] D Thethe_00665 glycerol dehydrogenase-like oxidoreductase K00096 araM; glycerol-1-phosphate dehydrogenase [NAD(P)+] [EC:1.1.1.261] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism D Thethe_01938 endo-beta-mannanase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids D Thethe_02545 lysophospholipase L1-like esterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:tto00230] D Thethe_01577 NTP pyrophosphohydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D Thethe_01292 NTP pyrophosphohydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D Thethe_02315 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D Thethe_01691 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D Thethe_00968 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Thethe_00177 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Thethe_02190 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Thethe_02186 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D Thethe_02188 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D Thethe_01613 phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] D Thethe_02189 phosphoribosylaminoimidazole synthetase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D Thethe_02192 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D Thethe_02191 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D Thethe_01344 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Thethe_02187 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Thethe_01520 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D Thethe_01320 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Thethe_02027 purine-nucleoside phosphorylase, DeoD family K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D Thethe_02552 uncharacterized protein, YfiH family K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D Thethe_00308 hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D Thethe_02195 inosine-5''-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D Thethe_00982 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Thethe_02155 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D Thethe_02194 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Thethe_01497 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D Thethe_00339 ribonucleoside-diphosphate reductase class II K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Thethe_01951 ribonucleoside-triphosphate reductase class III catalytic subunit K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D Thethe_02036 deoxyguanosinetriphosphate triphosphohydrolase, putative K01129 dgt; dGTPase [EC:3.1.5.1] D Thethe_01519 (p)ppGpp synthetase, RelA/SpoT family K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D Thethe_00265 exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D Thethe_02736 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Thethe_02396 5'-nucleotidase/2',3'-cyclic phosphodiesterase-like hydrolase K08693 yfkN; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase / 5'-nucleotidase [EC:3.1.4.16 3.1.3.6 3.1.3.5] D Thethe_01348 metallophosphoesterase, MG_246/BB_0505 family K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] D Thethe_00404 adenylate kinase family protein K00939 adk; adenylate kinase [EC:2.7.4.3] D Thethe_01560 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D Thethe_01561 PAPS reductase/FAD synthetase family protein K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D Thethe_02236 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] C 00240 Pyrimidine metabolism [PATH:tto00240] D Thethe_00242 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Thethe_00241 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Thethe_01513 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Thethe_01688 putative amidohydrolase K01465 URA4; dihydroorotase [EC:3.5.2.3] D Thethe_01512 dihydroorotase, multifunctional complex type K01465 URA4; dihydroorotase [EC:3.5.2.3] D Thethe_01509 dihydroorotate dehydrogenase family protein K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14] D Thethe_01510 2-polyprenylphenol hydroxylase-like oxidoreductase K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit D Thethe_01508 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D Thethe_01511 orotidine 5''-phosphate decarboxylase, subfamily 2 K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D Thethe_01388 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D Thethe_00982 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Thethe_01066 MAF protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D Thethe_02628 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D Thethe_01325 monofunctional chorismate mutase, clade 1 K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D Thethe_02058 uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48] D Thethe_01320 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Thethe_02396 5'-nucleotidase/2',3'-cyclic phosphodiesterase-like hydrolase K08693 yfkN; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase / 5'-nucleotidase [EC:3.1.4.16 3.1.3.6 3.1.3.5] D Thethe_02581 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D Thethe_01514 pyrimidine operon attenuation protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D Thethe_01348 metallophosphoesterase, MG_246/BB_0505 family K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] D Thethe_02314 pyrimidine-nucleoside phosphorylase K00756 pdp; pyrimidine-nucleoside phosphorylase [EC:2.4.2.2] D Thethe_02316 cytidine deaminase, homotetrameric K01489 cdd; cytidine deaminase [EC:3.5.4.5] D Thethe_01951 ribonucleoside-triphosphate reductase class III catalytic subunit K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D Thethe_00339 ribonucleoside-diphosphate reductase class II K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Thethe_02580 deoxycytidylate deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12] D Thethe_00078 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D Thethe_01365 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Thethe_02827 dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Thethe_02589 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21] D Thethe_00955 nicotinamidase-like amidase K09020 rutB; ureidoacrylate peracid hydrolase [EC:3.5.1.110] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:tto00250] D Thethe_01345 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Thethe_00539 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D Thethe_01828 asparagine synthase, glutamine-hydrolyzing K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Thethe_00251 aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1] D Thethe_00243 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Thethe_00244 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Thethe_02736 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Thethe_01344 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Thethe_01513 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Thethe_02135 NAD-dependent aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Thethe_01103 NADPH-dependent glutamate synthase, homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Thethe_01015 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Thethe_01165 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Thethe_00242 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Thethe_00241 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Thethe_00491 glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Thethe_02190 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:tto00260] D Thethe_01363 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Thethe_01012 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Thethe_00045 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Thethe_02640 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Thethe_02638 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D Thethe_02639 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D Thethe_00215 threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D Thethe_00566 glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Thethe_02636 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D Thethe_02040 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Thethe_02634 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Thethe_02137 phosphoglycerate dehydrogenase-like oxidoreductase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Thethe_01322 fructose-2,6-bisphosphatase K22305 psp; phosphoserine phosphatase [EC:3.1.3.3] D Thethe_01960 glycine cleavage system protein P K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D Thethe_01961 glycine cleavage system protein P K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D Thethe_01958 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Thethe_01963 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thethe_01959 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Thethe_01636 L-serine dehydratase, iron-sulfur-dependent, alpha subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Thethe_01637 L-serine dehydratase, iron-sulfur-dependent, beta subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Thethe_01183 tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D Thethe_01182 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] C 00270 Cysteine and methionine metabolism [PATH:tto00270] D Thethe_00860 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Thethe_00359 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Thethe_01588 cystathionine beta-synthase (acetylserine-dependent) K01738 cysK; cysteine synthase [EC:2.5.1.47] D Thethe_00696 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D Thethe_01589 cystathionine beta-lyase/cystathionine gamma-synthase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Thethe_01702 bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Thethe_00792 Homocysteine S-methyltransferase/B12 binding domain/Pterin binding enzyme K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Thethe_02277 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Thethe_01329 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D Thethe_01315 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D Thethe_01175 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D Thethe_02552 uncharacterized protein, YfiH family K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D Thethe_00260 haloacid dehalogenase superfamily protein, phosphoserine phosphatase/2,3-diketo-5-methylthio-1-phosphopentane phosphatase K08966 mtnX; 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase [EC:3.1.3.87] D Thethe_02017 GAF domain-containing protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14] D Thethe_02181 LuxS protein involved in autoinducer AI2 synthesis K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D Thethe_01363 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Thethe_01012 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Thethe_00045 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Thethe_02640 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Thethe_00691 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D Thethe_01562 O-acetylhomoserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D Thethe_01571 O-acetylhomoserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D Thethe_01587 O-acetylhomoserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D Thethe_00705 O-acetylhomoserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D Thethe_01112 branched-chain amino acid aminotransferase, group I K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Thethe_01345 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Thethe_02460 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D Thethe_01636 L-serine dehydratase, iron-sulfur-dependent, alpha subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Thethe_01637 L-serine dehydratase, iron-sulfur-dependent, beta subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Thethe_02634 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Thethe_02137 phosphoglycerate dehydrogenase-like oxidoreductase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] C 00280 Valine, leucine and isoleucine degradation [PATH:tto00280] D Thethe_01112 branched-chain amino acid aminotransferase, group I K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Thethe_01963 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thethe_01667 acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D Thethe_01663 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:tto00290] D Thethe_00015 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Thethe_00016 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Thethe_00017 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D Thethe_00019 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Thethe_00012 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Thethe_00013 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D Thethe_00018 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Thethe_01112 branched-chain amino acid aminotransferase, group I K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Thethe_00014 isopropylmalate/homocitrate/citramalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D Thethe_02083 2-isopropylmalate synthase/homocitrate synthase family protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:tto00300] D Thethe_00045 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Thethe_02640 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Thethe_01363 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Thethe_01012 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Thethe_01011 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Thethe_00148 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Thethe_01010 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D Thethe_01009 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D Thethe_00240 acetylornithine/succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Thethe_02573 dipeptidase, putative K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Thethe_01500 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D Thethe_00608 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D Thethe_01781 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Thethe_01780 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:tto00310] D Thethe_01963 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thethe_01663 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Thethe_00337 ornithine/acetylornithine aminotransferase K09251 patA; putrescine aminotransferase [EC:2.6.1.82] D Thethe_02135 NAD-dependent aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00220 Arginine biosynthesis [PATH:tto00220] D Thethe_02237 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D Thethe_00243 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Thethe_00244 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Thethe_00086 arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6] D Thethe_01015 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Thethe_01165 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Thethe_00242 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Thethe_00241 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Thethe_02236 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D Thethe_01345 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Thethe_00238 glutamate N-acetyltransferase K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] D Thethe_00239 N-acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D Thethe_00237 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D Thethe_00240 acetylornithine/succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] C 00330 Arginine and proline metabolism [PATH:tto00330] D Thethe_01711 N-methylhydantoinase A/acetone carboxylase, beta subunit K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14] D Thethe_01614 arginine/lysine/ornithine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19] D Thethe_00197 arginine/lysine/ornithine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19] D Thethe_01316 agmatinase K01480 speB; agmatinase [EC:3.5.3.11] D Thethe_01315 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D Thethe_01329 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D Thethe_00337 ornithine/acetylornithine aminotransferase K09251 patA; putrescine aminotransferase [EC:2.6.1.82] D Thethe_01868 putative acetamidase/formamidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D Thethe_01337 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D Thethe_01256 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Thethe_01257 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D Thethe_01345 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Thethe_02138 dihydrodipicolinate synthase/N-acetylneuraminate lyase K18123 HOGA1; 4-hydroxy-2-oxoglutarate aldolase [EC:4.1.3.16] C 00340 Histidine metabolism [PATH:tto00340] D Thethe_00556 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D Thethe_00555 ATP phosphoribosyltransferase, regulatory subunit K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit D Thethe_00563 phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphatase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31] D Thethe_00561 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino) imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D Thethe_00560 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D Thethe_00562 imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D Thethe_00559 imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D Thethe_00558 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Thethe_02629 histidinol phosphate phosphatase HisJ family K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15] D Thethe_00557 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D Thethe_02323 glutamate formiminotransferase K00603 fctD; glutamate formiminotransferase / 5-formyltetrahydrofolate cyclo-ligase [EC:2.1.2.5 6.3.3.2] C 00350 Tyrosine metabolism [PATH:tto00350] D Thethe_01345 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Thethe_00558 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Thethe_02686 alcohol dehydrogenase, class IV K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D Thethe_00467 alcohol dehydrogenase, class IV K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D Thethe_01836 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52] D Thethe_02135 NAD-dependent aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Thethe_00962 uncharacterized protein, 4-oxalocrotonate tautomerase K07253 MIF; phenylpyruvate tautomerase [EC:5.3.2.1] C 00360 Phenylalanine metabolism [PATH:tto00360] D Thethe_01664 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D Thethe_01345 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Thethe_00558 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Thethe_00962 uncharacterized protein, 4-oxalocrotonate tautomerase K07253 MIF; phenylpyruvate tautomerase [EC:5.3.2.1] D Thethe_01868 putative acetamidase/formamidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D Thethe_02520 NADH:flavin oxidoreductase K10797 enr; 2-enoate reductase [EC:1.3.1.31] D Thethe_01839 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] C 00380 Tryptophan metabolism [PATH:tto00380] D Thethe_01640 putative metal-dependent hydrolase K07130 kynB; arylformamidase [EC:3.5.1.9] D Thethe_01963 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thethe_01663 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Thethe_01868 putative acetamidase/formamidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:tto00400] D Thethe_02494 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Thethe_01632 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Thethe_01635 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D Thethe_01258 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D Thethe_01241 shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D Thethe_01255 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D Thethe_01630 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D Thethe_01819 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D Thethe_01177 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Thethe_01178 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D Thethe_01179 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D Thethe_01181 phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D Thethe_01180 Indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D Thethe_01183 tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D Thethe_01182 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D Thethe_02641 ACT domain-containing protein K06209 pheB; chorismate mutase [EC:5.4.99.5] D Thethe_01631 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D Thethe_01633 prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51] D Thethe_01345 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Thethe_00558 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:tto00410] D Thethe_02303 L-aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D Thethe_02302 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D Thethe_01667 acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] C 00430 Taurine and hypotaurine metabolism [PATH:tto00430] D Thethe_01468 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Thethe_02120 propanediol utilization protein K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8] D Thethe_01467 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism D Thethe_00514 metal-dependent hydrolase, beta-lactamase superfamily I K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55] C 00450 Selenocompound metabolism [PATH:tto00450] D Thethe_01589 cystathionine beta-lyase/cystathionine gamma-synthase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Thethe_01702 bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Thethe_00792 Homocysteine S-methyltransferase/B12 binding domain/Pterin binding enzyme K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Thethe_02676 cysteine desulfurase-like protein, SufS subfamily K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D Thethe_00299 thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D Thethe_00474 thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D Thethe_01560 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D Thethe_01561 PAPS reductase/FAD synthetase family protein K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D Thethe_00094 protein containing C-terminal region/beta chain of methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:tto00460] D Thethe_00913 beta-glucosidase-like glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D Thethe_01826 beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D Thethe_00566 glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:tto00470] D Thethe_00528 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Thethe_00207 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Thethe_02185 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D Thethe_01778 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Thethe_01500 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D Thethe_00608 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] C 00480 Glutathione metabolism [PATH:tto00480] D Thethe_02326 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Thethe_02438 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D Thethe_01641 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Thethe_01315 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation [PATH:tto00511] D Thethe_01938 endo-beta-mannanase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D Thethe_00645 beta-galactosidase/beta-glucuronidase K01192 E3.2.1.25; beta-mannosidase [EC:3.2.1.25] C 00540 Lipopolysaccharide biosynthesis [PATH:tto00540] D Thethe_02529 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] C 00542 O-Antigen repeat unit biosynthesis [PATH:tto00542] D Thethe_02579 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Thethe_01289 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:tto00541] D Thethe_00973 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Thethe_02090 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Thethe_00672 UDP-glucose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Thethe_00869 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Thethe_01108 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D Thethe_02026 phosphomannose isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D Thethe_00871 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D Thethe_00866 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D Thethe_00868 nucleoside-diphosphate-sugar epimerase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D Thethe_00176 UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D Thethe_02578 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] C 00550 Peptidoglycan biosynthesis [PATH:tto00550] D Thethe_02576 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Thethe_02712 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Thethe_01775 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Thethe_00728 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Thethe_00173 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D Thethe_01778 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Thethe_01781 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Thethe_00207 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Thethe_01780 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D Thethe_01385 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Thethe_01210 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Thethe_01653 undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Thethe_00221 membrane-associated phospholipid phosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D Thethe_02384 membrane-associated phospholipid phosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D Thethe_01779 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Thethe_01776 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D Thethe_02423 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Thethe_00227 cell division protein FtsI/penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Thethe_01238 cell division protein FtsI/penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Thethe_01071 cell division protein FtsI/penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Thethe_00682 cell division protein FtsI/penicillin-binding protein 2 K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) D Thethe_01782 stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) D Thethe_00627 cell division protein FtsI/penicillin-binding protein 2 K05364 pbpA; penicillin-binding protein A D Thethe_01296 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Thethe_01310 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Thethe_01093 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Thethe_00007 UDP-N-acetylmuramyl tripeptide synthase K23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13] D Thethe_00006 putative glutamine amidotransferase K07009 gatD; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13] C 00552 Teichoic acid biosynthesis [PATH:tto00552] D Thethe_01653 undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Thethe_00221 membrane-associated phospholipid phosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D Thethe_02384 membrane-associated phospholipid phosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D Thethe_02579 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Thethe_01289 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Thethe_00535 exopolysaccharide biosynthesis protein, WecB/TagA/CpsF family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] D Thethe_00031 cell envelope-related function transcriptional attenuator common domain protein K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] D Thethe_00220 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:tto00543] D Thethe_00864 acetyltransferase (isoleucine patch superfamily) K03818 wcaF; putative colanic acid biosynthesis acetyltransferase WcaF [EC:2.3.1.-] D Thethe_02579 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Thethe_01289 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Thethe_00060 glycosyltransferase K20999 pslF; polysaccharide biosynthesis protein PslF D Thethe_02729 glycosyl transferase K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-] D Thethe_00860 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Thethe_00359 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:tto00730] D Thethe_00930 hydroxymethylpyrimidine synthase K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D Thethe_01864 phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D Thethe_01213 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Thethe_01791 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Thethe_01790 thiazole biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D Thethe_01972 iron-only hydrogenase maturation rSAM protein HydG K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19] D Thethe_01279 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Thethe_01862 hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D Thethe_01861 thiamine-phosphate diphosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D Thethe_01485 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D Thethe_01483 thiamine pyrophosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2] D Thethe_00404 adenylate kinase family protein K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:tto00740] D Thethe_00022 GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Thethe_00020 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D Thethe_00023 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D Thethe_00021 riboflavin synthase alpha chain K00793 ribE; riboflavin synthase [EC:2.5.1.9] D Thethe_01370 riboflavin kinase/FMN adenylyltransferase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D Thethe_01862 hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D Thethe_01577 NTP pyrophosphohydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D Thethe_01292 NTP pyrophosphohydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D Thethe_01646 polyprenyl p-hydroxybenzoate/phenylacrylic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:tto00750] D Thethe_02639 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D Thethe_00848 pyridoxal 5''-phosphate synthase, synthase subunit Pdx1 K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6] D Thethe_00849 pyridoxal 5''-phosphate synthase, glutaminase subunit Pdx2 K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6] C 00760 Nicotinate and nicotinamide metabolism [PATH:tto00760] D Thethe_00539 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D Thethe_00538 quinolinate synthetase K03517 nadA; quinolinate synthase [EC:2.5.1.72] D Thethe_00540 nicotinate-nucleotide pyrophosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D Thethe_01841 nicotinate-nucleotide pyrophosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D Thethe_01048 nicotinic acid phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D Thethe_02027 purine-nucleoside phosphorylase, DeoD family K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D Thethe_01320 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Thethe_02396 5'-nucleotidase/2',3'-cyclic phosphodiesterase-like hydrolase K08693 yfkN; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase / 5'-nucleotidase [EC:3.1.4.16 3.1.3.6 3.1.3.5] D Thethe_01087 nicotinate/nicotinamide nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D Thethe_00843 NAD+ synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] D Thethe_02010 NAD-dependent protein deacetylase, SIR2 family K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D Thethe_01281 putative sugar kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D Thethe_02135 NAD-dependent aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:tto00770] D Thethe_00019 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Thethe_00012 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Thethe_00013 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D Thethe_00018 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Thethe_02301 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D Thethe_02302 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D Thethe_00320 pantothenate kinase, type III K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D Thethe_01495 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D Thethe_01472 pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D Thethe_01045 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D Thethe_00774 phosphopantetheine--protein transferase K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-] D Thethe_01112 branched-chain amino acid aminotransferase, group I K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Thethe_02303 L-aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] C 00780 Biotin metabolism [PATH:tto00780] D Thethe_01457 beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Thethe_01459 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Thethe_00058 dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Thethe_02556 beta-hydroxyacyl-(acyl carrier protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Thethe_02765 iron-only hydrogenase maturation protein HydE K01012 bioB; biotin synthase [EC:2.8.1.6] D Thethe_00632 birA, biotin-(acetyl-CoA-carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:tto00785] D Thethe_01964 lipoyltransferase and lipoate-protein ligase K03800 lplA; lipoate---protein ligase [EC:6.3.1.20] D Thethe_01963 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thethe_01960 glycine cleavage system protein P K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D Thethe_01961 glycine cleavage system protein P K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D Thethe_01958 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Thethe_01959 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:tto00790] D Thethe_00330 GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D Thethe_00332 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D Thethe_00331 Dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D Thethe_00997 folylpolyglutamate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D Thethe_00022 GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Thethe_00333 queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D Thethe_02087 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] C 00670 One carbon pool by folate [PATH:tto00670] D Thethe_00313 formyltetrahydrofolate synthetase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D Thethe_01274 5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D Thethe_02322 methenyl tetrahydrofolate cyclohydrolase K01500 fchA; methenyltetrahydrofolate cyclohydrolase [EC:3.5.4.9] D Thethe_00566 glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Thethe_02188 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D Thethe_02187 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Thethe_02323 glutamate formiminotransferase K00603 fctD; glutamate formiminotransferase / 5-formyltetrahydrofolate cyclo-ligase [EC:2.1.2.5 6.3.3.2] D Thethe_01492 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Thethe_01958 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Thethe_00792 Homocysteine S-methyltransferase/B12 binding domain/Pterin binding enzyme K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Thethe_00791 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:tto00860] D Thethe_01098 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Thethe_01596 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D Thethe_01593 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D Thethe_01591 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D Thethe_01595 hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D Thethe_01594 uroporphyrin-III C-methyltransferase K13542 cobA-hemD; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75] D Thethe_01592 siroheme synthase, N-terminal domain protein K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76] D Thethe_02344 cobyrinic acid a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11] D Thethe_01008 ATP:corrinoid adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D Thethe_02343 cobyric acid synthase CobQ K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D Thethe_02342 cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D Thethe_02338 adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] D Thethe_02337 cobalamin 5''-phosphate synthase/cobalamin synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D Thethe_02339 L-threonine-O-3-phosphate decarboxylase K04720 cobD; threonine-phosphate decarboxylase [EC:4.1.1.81] D Thethe_00011 bacterioferritin (cytochrome b1) K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:tto00130] D Thethe_01647 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D Thethe_01648 menaquinone biosynthesis decarboxylase, SCO4490 family K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98] D Thethe_01646 polyprenyl p-hydroxybenzoate/phenylacrylic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D Thethe_00289 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:tto00900] D Thethe_01279 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Thethe_01383 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D Thethe_00353 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D Thethe_00189 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D Thethe_00355 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D Thethe_01381 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D Thethe_01327 (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D Thethe_01663 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Thethe_01646 polyprenyl p-hydroxybenzoate/phenylacrylic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D Thethe_01277 geranylgeranyl pyrophosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D Thethe_01385 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Thethe_01210 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D Thethe_02525 transketolase, alpha subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Thethe_02526 transketolase, beta subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Thethe_01200 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Thethe_02142 transketolase, alpha subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Thethe_02143 transketolase, beta subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis D Thethe_01108 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids [PATH:tto00946] D Thethe_00913 beta-glucosidase-like glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D Thethe_01826 beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D Thethe_02475 NADH:flavin oxidoreductase K26178 fcr; flavanone/flavanol-cleaving reductase C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis [PATH:tto00311] D Thethe_00944 acetyl esterase (deacetylase) K01060 cah; cephalosporin-C deacetylase [EC:3.1.1.41] D Thethe_00518 beta-lactamase class A K17836 penP; beta-lactamase class A [EC:3.5.2.6] D Thethe_02505 beta-lactamase class A K17836 penP; beta-lactamase class A [EC:3.5.2.6] C 00332 Carbapenem biosynthesis [PATH:tto00332] D Thethe_01256 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Thethe_01257 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:tto00261] D Thethe_01560 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D Thethe_01561 PAPS reductase/FAD synthetase family protein K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D Thethe_01363 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Thethe_01012 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Thethe_01011 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Thethe_00148 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Thethe_01010 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:tto00521] D Thethe_01906 transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2] D Thethe_00073 ROK family protein, putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D Thethe_00638 ROK family protein, putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D Thethe_00968 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Thethe_01108 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D Thethe_01906 transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2] D Thethe_00073 ROK family protein, putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D Thethe_00638 ROK family protein, putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis C 00401 Novobiocin biosynthesis [PATH:tto00401] D Thethe_01631 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D Thethe_01345 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Thethe_00558 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis D Thethe_01177 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Thethe_01178 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D Thethe_01460 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Thethe_01459 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Thethe_00058 dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D Thethe_01458 acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites [PATH:tto00999] D Thethe_02277 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Thethe_01241 shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D Thethe_00913 beta-glucosidase-like glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D Thethe_01826 beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:tto00362] D Thethe_01839 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D Thethe_00318 acetyl/propionyl-CoA carboxylase, alpha subunit K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma D Thethe_01664 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D Thethe_01663 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation [PATH:tto00627] D Thethe_01868 putative acetamidase/formamidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D Thethe_02046 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D Thethe_01646 polyprenyl p-hydroxybenzoate/phenylacrylic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation [PATH:tto00625] D Thethe_00467 alcohol dehydrogenase, class IV K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D Thethe_02686 alcohol dehydrogenase, class IV K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D Thethe_01575 nitrogenase molybdenum-iron protein, alpha and beta chains K02591 nifK; nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1] D Thethe_01582 nitrogenase molybdenum-iron protein, alpha and beta chains K02591 nifK; nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1] D Thethe_01852 nitrogenase molybdenum-iron protein, alpha and beta chains K02591 nifK; nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1] D Thethe_01584 nitrogenase iron protein K02588 nifH; nitrogenase iron protein NifH D Thethe_01854 Mo-nitrogenase iron protein subunit NifH K02588 nifH; nitrogenase iron protein NifH D Thethe_01853 Mo-nitrogenase MoFe protein subunit NifD precursor K02586 nifD; nitrogenase molybdenum-iron protein alpha chain [EC:1.18.6.1] D Thethe_01576 nitrogenase molybdenum-iron protein, alpha and beta chains K02586 nifD; nitrogenase molybdenum-iron protein alpha chain [EC:1.18.6.1] D Thethe_01583 nitrogenase molybdenum-iron protein, alpha and beta chains K02586 nifD; nitrogenase molybdenum-iron protein alpha chain [EC:1.18.6.1] C 00361 Chlorocyclohexane and chlorobenzene degradation C 00623 Toluene degradation C 00622 Xylene degradation D Thethe_01839 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] C 00633 Nitrotoluene degradation D Thethe_00613 Fe-S-cluster-containing hydrogenase subunit K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit C 00642 Ethylbenzene degradation C 00643 Styrene degradation [PATH:tto00643] D Thethe_01868 putative acetamidase/formamidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00791 Atrazine degradation C 00930 Caprolactam degradation C 00363 Bisphenol degradation C 00621 Dioxin degradation D Thethe_01839 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] C 00626 Naphthalene degradation [PATH:tto00626] D Thethe_00467 alcohol dehydrogenase, class IV K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D Thethe_02686 alcohol dehydrogenase, class IV K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:tto03020] D Thethe_00374 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Thethe_00375 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Thethe_00412 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Thethe_01496 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors D Thethe_00773 DNA helicase, Rad3 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:tto03010] D Thethe_02793 ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D Thethe_01390 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D Thethe_00389 ribosomal protein S3, bacterial type K02982 RP-S3; small subunit ribosomal protein S3 D Thethe_00411 ribosomal protein S4, bacterial/organelle type K02986 RP-S4; small subunit ribosomal protein S4 D Thethe_00777 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4 D Thethe_00400 ribosomal protein S5, bacterial/organelle type K02988 RP-S5; small subunit ribosomal protein S5 D Thethe_02755 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D Thethe_00379 ribosomal protein S7, bacterial/organelle K02992 RP-S7; small subunit ribosomal protein S7 D Thethe_00397 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D Thethe_00419 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D Thethe_00382 ribosomal protein S10, bacterial/organelle K02946 RP-S10; small subunit ribosomal protein S10 D Thethe_00410 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D Thethe_00378 ribosomal protein S12, bacterial/organelle K02950 RP-S12; small subunit ribosomal protein S12 D Thethe_00409 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D Thethe_00396 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D Thethe_01369 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D Thethe_01438 SSU ribosomal protein S16P K02959 RP-S16; small subunit ribosomal protein S16 D Thethe_00392 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D Thethe_02753 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D Thethe_00387 ribosomal protein S19, bacterial/organelle K02965 RP-S19; small subunit ribosomal protein S19 D Thethe_01125 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D Thethe_01143 ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D Thethe_00371 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D Thethe_00386 ribosomal protein L2, bacterial/organellar K02886 RP-L2; large subunit ribosomal protein L2 D Thethe_00383 50S ribosomal protein L3, bacterial K02906 RP-L3; large subunit ribosomal protein L3 D Thethe_00384 50S ribosomal protein L4, bacterial/organelle K02926 RP-L4; large subunit ribosomal protein L4 D Thethe_00395 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D Thethe_00398 ribosomal protein L6, bacterial type K02933 RP-L6; large subunit ribosomal protein L6 D Thethe_00373 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D Thethe_02749 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D Thethe_00372 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D Thethe_00370 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11 D Thethe_00418 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13 D Thethe_00393 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14 D Thethe_00402 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15 D Thethe_00390 ribosomal protein L16, bacterial/organelle K02878 RP-L16; large subunit ribosomal protein L16 D Thethe_00413 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D Thethe_00399 ribosomal protein L18, bacterial type K02881 RP-L18; large subunit ribosomal protein L18 D Thethe_01434 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D Thethe_01815 LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20 D Thethe_01082 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D Thethe_00388 ribosomal protein L22, bacterial type K02890 RP-L22; large subunit ribosomal protein L22 D Thethe_00385 ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D Thethe_00394 ribosomal protein L24, bacterial/organelle K02895 RP-L24; large subunit ribosomal protein L24 D Thethe_00607 ribosomal protein L25, Ctc-form K02897 RP-L25; large subunit ribosomal protein L25 D Thethe_01084 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D Thethe_01480 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D Thethe_00391 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D Thethe_00401 ribosomal protein L30, bacterial/organelle K02907 RP-L30; large subunit ribosomal protein L30 D Thethe_02590 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D Thethe_01465 LSU ribosomal protein L32P K02911 RP-L32; large subunit ribosomal protein L32 D Thethe_00367 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D Thethe_02777 ribosomal protein L34, bacterial type K02914 RP-L34; large subunit ribosomal protein L34 D Thethe_01816 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D Thethe_00408 LSU ribosomal protein L36P K02919 RP-L36; large subunit ribosomal protein L36 D Thethe_00377 ribosomal protein HS6-type (S12/L30/L7a) K07590 RP-L7A; large subunit ribosomal protein L7A D Thethe_00420 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Thethe_00545 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Thethe_01506 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Thethe_00070 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Thethe_00053 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Thethe_00422 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Thethe_00071 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Thethe_00546 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Thethe_01505 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Thethe_00054 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Thethe_00072 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Thethe_01504 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Thethe_00547 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:tto00970] D Thethe_01807 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Thethe_02923 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Thethe_02022 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Thethe_01164 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Thethe_00606 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Thethe_00035 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Thethe_00036 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Thethe_02152 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Thethe_00055 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Thethe_00423 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Thethe_02033 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Thethe_00426 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Thethe_01993 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Thethe_01990 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Thethe_02150 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Thethe_01105 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Thethe_00303 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Thethe_00424 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Thethe_01104 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Thethe_00056 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Thethe_02153 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Thethe_01991 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Thethe_02147 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Thethe_02151 tRNA-His K14226 tRNA-His; tRNA His D Thethe_01806 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Thethe_00421 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Thethe_02098 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Thethe_00266 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Thethe_01049 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Thethe_01550 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Thethe_02148 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Thethe_00469 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Thethe_02149 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Thethe_02146 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Thethe_00268 tRNA-Met K14230 tRNA-Met; tRNA Met D Thethe_00425 tRNA-Met K14230 tRNA-Met; tRNA Met D Thethe_02032 tRNA-Met K14230 tRNA-Met; tRNA Met D Thethe_00267 tRNA-Met K14230 tRNA-Met; tRNA Met D Thethe_00427 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Thethe_01992 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Thethe_01000 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Thethe_01747 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Thethe_02282 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Thethe_00039 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Thethe_00028 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Thethe_00029 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Thethe_00038 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Thethe_00365 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Thethe_00463 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Thethe_02735 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Thethe_01199 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Thethe_02280 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Thethe_00468 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Thethe_01994 tRNA-Val K14237 tRNA-Val; tRNA Val D Thethe_02281 tRNA-Val K14237 tRNA-Val; tRNA Val D Thethe_02024 tRNA-Val K14237 tRNA-Val; tRNA Val D Thethe_02025 tRNA-Val K14237 tRNA-Val; tRNA Val D Thethe_01098 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Thethe_00358 glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D Thethe_02166 glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D Thethe_02165 glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D Thethe_02167 glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D Thethe_01228 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Thethe_01113 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Thethe_01206 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Thethe_01343 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D Thethe_01155 glycyl-tRNA synthetase, dimeric type K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D Thethe_01821 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Thethe_00027 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Thethe_00360 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Thethe_00094 protein containing C-terminal region/beta chain of methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Thethe_01492 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Thethe_00995 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Thethe_02420 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Thethe_01174 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Thethe_00329 lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Thethe_00209 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Thethe_00356 prolyl-tRNA synthetase, family II K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Thethe_01205 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Thethe_01813 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Thethe_01812 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Thethe_02305 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Thethe_01431 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:tto03060] D Thethe_00403 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Thethe_00368 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Thethe_02037 protein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Thethe_01525 protein-export membrane protein, SecD/SecF family K03072 secD; preprotein translocase subunit SecD D Thethe_01524 protein-export membrane protein, SecD/SecF family K03074 secF; preprotein translocase subunit SecF D Thethe_01530 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Thethe_02774 preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D Thethe_02243 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Thethe_01439 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Thethe_00040 Bacterial signal recognition particle RNA K01983 ffs; SRP RNA D Thethe_01452 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Thethe_00026 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D Thethe_02693 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D Thethe_01202 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:tto04122] D Thethe_01213 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Thethe_01791 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Thethe_02028 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D Thethe_01790 thiazole biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D Thethe_01566 thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein D Thethe_01564 putative metal-dependent protease of the PAD1/JAB1 superfamily K21140 mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6] C 03050 Proteasome C 03018 RNA degradation [PATH:tto03018] D Thethe_02039 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Thethe_01368 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D Thethe_01161 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Thethe_00126 DNA/RNA helicase, superfamily II K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Thethe_02591 transcription termination factor Rho K03628 rho; transcription termination factor Rho D Thethe_01349 hypothetical protein K18682 rny; ribonucrease Y [EC:3.1.-.-] D Thethe_01233 hypothetical protein K12574 rnj; ribonuclease J [EC:3.1.-.-] D Thethe_02523 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Thethe_00748 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Thethe_01137 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Thethe_00592 molecular chaperone K04043 dnaK; molecular chaperone DnaK D Thethe_02196 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Thethe_01336 RNA chaperone Hfq K03666 hfq; host factor-I protein D Thethe_00093 tRNA nucleotidyltransferase/poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:tto03030] D Thethe_00746 DNA-directed DNA polymerase III PolC K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Thethe_01379 DNA polymerase III, alpha chain K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D Thethe_00042 DNA polymerase III, subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Thethe_00081 DNA polymerase III, delta'' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Thethe_01124 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Thethe_00002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Thethe_02847 DNA polymerase sliding clamp subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Thethe_02748 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D Thethe_02035 DNA primase, catalytic core K02316 dnaG; DNA primase [EC:2.7.7.101] D Thethe_02845 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Thethe_02754 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Thethe_01338 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Thethe_01429 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Thethe_02168 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:tto03410] D Thethe_02221 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] D Thethe_02050 endonuclease III; DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Thethe_00074 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D Thethe_00069 uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D Thethe_00825 apurinic endonuclease APN1 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D Thethe_01521 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Thethe_02168 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:tto03420] D Thethe_00183 transcription-repair coupling factor Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D Thethe_00624 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A D Thethe_00623 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D Thethe_00628 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D Thethe_02540 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Thethe_00522 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Thethe_02169 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Thethe_02168 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Thethe_00773 DNA helicase, Rad3 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] C 03430 Mismatch repair [PATH:tto03430] D Thethe_01333 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Thethe_01809 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2 D Thethe_01334 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Thethe_02540 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Thethe_00522 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Thethe_02169 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Thethe_01275 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D Thethe_01276 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D Thethe_01521 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Thethe_02845 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Thethe_02754 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Thethe_00746 DNA-directed DNA polymerase III PolC K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Thethe_01379 DNA polymerase III, alpha chain K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D Thethe_00002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Thethe_02847 DNA polymerase sliding clamp subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Thethe_00042 DNA polymerase III, subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Thethe_01124 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Thethe_00081 DNA polymerase III, delta'' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Thethe_02168 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:tto03440] D Thethe_01521 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Thethe_02845 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Thethe_02754 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Thethe_00004 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D Thethe_01153 DNA replication and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D Thethe_00044 DNA replication and repair protein RecR K06187 recR; recombination protein RecR D Thethe_01356 protein RecA K03553 recA; recombination protein RecA D Thethe_01536 Holliday junction DNA helicase subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA D Thethe_01535 Holliday junction DNA helicase subunit RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D Thethe_01537 Holliday junction endonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D Thethe_01477 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Thethe_00923 putative transcriptional regulator with HTH domain K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Thethe_02274 helicase, putative, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D Thethe_02902 ATP-dependent exoDNAse (exonuclease V), alpha subunit/helicase superfamily I member K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D Thethe_00746 DNA-directed DNA polymerase III PolC K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Thethe_01379 DNA polymerase III, alpha chain K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D Thethe_00002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Thethe_02847 DNA polymerase sliding clamp subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Thethe_00042 DNA polymerase III, subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Thethe_01124 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Thethe_00081 DNA polymerase III, delta'' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Thethe_01494 replication restart DNA helicase PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining [PATH:tto03450] D Thethe_00684 Ku protein K10979 ku; DNA end-binding protein Ku D Thethe_00683 ATP dependent DNA ligase-like protein,ATP dependent DNA ligase family protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:tto02010] D Thethe_01570 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K15553 ssuA; sulfonate transport system substrate-binding protein D Thethe_01559 ABC transporter, substrate-binding protein, aliphatic sulfonates family K15553 ssuA; sulfonate transport system substrate-binding protein D Thethe_01569 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K15554 ssuC; sulfonate transport system permease protein D Thethe_01557 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K15554 ssuC; sulfonate transport system permease protein D Thethe_01568 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Thethe_01558 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Thethe_01857 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D Thethe_01858 molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein D Thethe_02654 periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) K05845 opuC; osmoprotectant transport system substrate-binding protein D Thethe_02653 ABC-type proline/glycine betaine transport system, permease component K05846 opuBD; osmoprotectant transport system permease protein D Thethe_02652 glycine betaine/L-proline transport ATP binding subunit K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D Thethe_00610 carbohydrate ABC transporter ATP-binding protein, CUT1 family K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Thethe_00735 carbohydrate ABC transporter substrate-binding protein, CUT1 family K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein D Thethe_00736 carbohydrate ABC transporter membrane protein 1, CUT1 family K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D Thethe_00737 carbohydrate ABC transporter membrane protein 2, CUT1 family K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D Thethe_00432 carbohydrate ABC transporter substrate-binding protein, CUT1 family K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein D Thethe_00947 ABC-type sugar transport system, periplasmic component K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein D Thethe_00433 carbohydrate ABC transporter membrane protein 1, CUT1 family K10118 msmF; raffinose/stachyose/melibiose transport system permease protein D Thethe_00948 permease component of ABC-type sugar transporter K10118 msmF; raffinose/stachyose/melibiose transport system permease protein D Thethe_00434 carbohydrate ABC transporter membrane protein 2, CUT1 family K10119 msmG; raffinose/stachyose/melibiose transport system permease protein D Thethe_00949 ABC-type sugar transport system, permease component K10119 msmG; raffinose/stachyose/melibiose transport system permease protein D Thethe_02451 ABC-type sugar transport system, periplasmic component K10192 togB; oligogalacturonide transport system substrate-binding protein D Thethe_02450 carbohydrate ABC transporter membrane protein 1, CUT1 family K10193 togM; oligogalacturonide transport system permease protein D Thethe_02449 ABC-type sugar transport system, permease component K10194 togN; oligogalacturonide transport system permease protein D Thethe_00937 carbohydrate ABC transporter substrate-binding protein, CUT1 family K17318 lplA; putative aldouronate transport system substrate-binding protein D Thethe_00935 ABC-type polysaccharide transport system, permease component K17319 lplB; putative aldouronate transport system permease protein D Thethe_00936 ABC-type sugar transport system, permease component K17320 lplC; putative aldouronate transport system permease protein D Thethe_01905 carbohydrate ABC transporter substrate-binding protein, CUT1 family K17244 chiE; putative chitobiose transport system substrate-binding protein D Thethe_01904 carbohydrate ABC transporter membrane protein 1, CUT1 family K17245 chiF; putative chitobiose transport system permease protein D Thethe_01903 carbohydrate ABC transporter membrane protein 2, CUT1 family K17246 chiG; putative chitobiose transport system permease protein D Thethe_00654 ABC-type sugar transport system, periplasmic component K17234 araN; arabinooligosaccharide transport system substrate-binding protein D Thethe_00655 permease component of ABC-type sugar transporter K17235 araP; arabinooligosaccharide transport system permease protein D Thethe_00656 ABC-type sugar transport system, permease component K17236 araQ; arabinooligosaccharide transport system permease protein D Thethe_02321 putative ABC-type transport system, periplasmic component/surface lipoprotein K07335 bmpA; basic membrane protein A and related proteins D Thethe_02319 ABC-type uncharacterized transport system, permease component K23535 nupB; general nucleoside transport system permease protein D Thethe_02318 putative ABC-type transport system, permease component K23536 nupC; general nucleoside transport system permease protein D Thethe_02320 ATPase component of uncharacterized ABC-type transporter K23537 nupA; general nucleoside transport system ATP-binding protein D Thethe_00909 monosaccharide ABC transporter substrate-binding protein, CUT2 family K10439 rbsB; ribose transport system substrate-binding protein D Thethe_00910 permease component of ribose/xylose/arabinose/galactoside ABC-type transporters K10440 rbsC; ribose transport system permease protein D Thethe_00912 permease component of ribose/xylose/arabinose/galactoside ABC-type transporters K10440 rbsC; ribose transport system permease protein D Thethe_00911 ABC-type sugar transport system, ATPase component K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D Thethe_02427 ABC-type xylose transport system, periplasmic component K10543 xylF; D-xylose transport system substrate-binding protein D Thethe_02428 ABC-type xylose transport system, periplasmic component K10543 xylF; D-xylose transport system substrate-binding protein D Thethe_02425 ABC-type xylose transport system, permease component K10544 xylH; D-xylose transport system permease protein D Thethe_02426 ABC-type sugar transport system, ATPase component K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10] D Thethe_01762 phosphate ABC transporter substrate-binding protein, PhoT family K02040 pstS; phosphate transport system substrate-binding protein D Thethe_01761 phosphate ABC transporter membrane protein 1, PhoT family K02037 pstC; phosphate transport system permease protein D Thethe_01760 phosphate ABC transporter membrane protein 2, PhoT family K02038 pstA; phosphate transport system permease protein D Thethe_01759 phosphate ABC transporter ATP-binding protein, PhoT family K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Thethe_02252 amino acid ABC transporter substrate-binding protein, PAAT family K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein D Thethe_02251 amino acid ABC transporter membrane protein, PAAT family K17077 artQ; arginine/lysine/histidine transport system permease protein D Thethe_02250 amino acid ABC transporter ATP-binding protein, PAAT family K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1] D Thethe_02207 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D Thethe_01844 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Thethe_02208 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Thethe_02209 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Thethe_02210 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Thethe_02211 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Thethe_02179 lipoprotein, YaeC family K02073 metQ; D-methionine transport system substrate-binding protein D Thethe_01572 ABC-type metal ion transport system, periplasmic component/surface antigen K02073 metQ; D-methionine transport system substrate-binding protein D Thethe_02178 ABC-type metal ion transport system, permease component K02072 metI; D-methionine transport system permease protein D Thethe_01573 ABC-type metal ion transport system, permease component K02072 metI; D-methionine transport system permease protein D Thethe_02177 ABC-type metal ion transport system, ATPase component K02071 metN; D-methionine transport system ATP-binding protein D Thethe_01574 ABC-type metal ion transport system, ATPase component K02071 metN; D-methionine transport system ATP-binding protein D Thethe_02413 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein D Thethe_02164 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein D Thethe_02163 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein D Thethe_02162 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K15581 oppB; oligopeptide transport system permease protein D Thethe_02161 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K15582 oppC; oligopeptide transport system permease protein D Thethe_02160 oligopeptide/dipeptide ABC transporter, ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D Thethe_02159 oligopeptide/dipeptide ABC transporter, ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D Thethe_02386 ABC-type metal ion transport system, periplasmic component/surface adhesin K09815 znuA; zinc transport system substrate-binding protein D Thethe_02388 ABC-type Mn2+/Zn2+ transport system, permease component K09816 znuB; zinc transport system permease protein D Thethe_02387 ATPase component of Mn/Zn ABC-type transporter K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D Thethe_02515 hypothetical protein K02009 cbiN; cobalt/nickel transport protein D Thethe_02514 ABC-type Co2+ transport system, permease component K02007 cbiM; cobalt/nickel transport system permease protein D Thethe_02516 cobalt ABC transporter, permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D Thethe_02517 ABC-type cobalt transport system, ATPase component K02006 cbiO; cobalt/nickel transport system ATP-binding protein D Thethe_00994 hypothetical protein K03523 bioY; biotin transport system substrate-specific component D Thethe_00416 ABC-type cobalt transport system, permease component CbiQ K16785 ecfT; energy-coupling factor transport system permease protein D Thethe_00414 ABC-type cobalt transport system, ATPase component K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D Thethe_00415 ABC-type cobalt transport system, ATPase component K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D Thethe_01873 lantibiotic protection ABC transporter permease subunit, MutE/EpiE family K20491 nisE; lantibiotic transport system permease protein D Thethe_01872 lantibiotic protection ABC transporter permease subunit, MutG family K20492 nisG; lantibiotic transport system permease protein D Thethe_01874 gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit K20490 nisF; lantibiotic transport system ATP-binding protein D Thethe_00618 cell division protein K09811 ftsX; cell division transport system permease protein D Thethe_00617 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D Thethe_02602 ABC-type multidrug transport system, ATPase and permease component K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump D Thethe_02557 ABC-type multidrug transport system, ATPase and permease component K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump D Thethe_02601 ABC-type multidrug transport system, ATPase and permease component K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump D Thethe_02558 ABC-type multidrug transport system, ATPase and permease component K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump D Thethe_02647 ABC-type multidrug transport system, ATPase and permease component K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D Thethe_02646 ABC-type multidrug transport system, ATPase and permease component K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump C 02060 Phosphotransferase system (PTS) [PATH:tto02060] D Thethe_00342 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D Thethe_00744 phosphotransferase system HPr (HPr) family protein K02784 ptsH; phosphocarrier protein HPr D Thethe_00104 HPr-related phosphotransferase system component K02784 ptsH; phosphocarrier protein HPr D Thethe_02400 PTS system, glucose subfamily, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D Thethe_02310 PTS system IIA component, Glc family K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D Thethe_02311 PTS system N-acetylglucosamine-specific IICB component, Glc family K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D Thethe_02399 glucose/maltose/N-acetylglucosamine-specific phosphotransferase system IIC component K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D Thethe_00634 PTS system beta-glucoside-specific IIBCA component, Glc family K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-] D Thethe_02171 phosphotransferase system cellobiose-specific component IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D Thethe_02407 phosphotransferase system cellobiose-specific component IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D Thethe_02484 phosphotransferase system cellobiose-specific component IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D Thethe_00647 phosphotransferase system cellobiose-specific component IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D Thethe_02478 phosphotransferase system cellobiose-specific component IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D Thethe_02173 phosphotransferase system cellobiose-specific component IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D Thethe_02408 phosphotransferase system cellobiose-specific component IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D Thethe_02483 phosphotransferase system cellobiose-specific component IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D Thethe_00649 phosphotransferase system cellobiose-specific component IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D Thethe_02477 phosphotransferase system cellobiose-specific component IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D Thethe_02172 PTS system, lactose/cellobiose family IIC component K02761 celB; cellobiose PTS system EIIC component D Thethe_00650 phosphotransferase system, cellobiose specific, IIC component K02761 celB; cellobiose PTS system EIIC component D Thethe_02476 PTS system, lactose/cellobiose family IIC component K02761 celB; cellobiose PTS system EIIC component D Thethe_02481 PTS system, lactose/cellobiose family IIC component K02761 celB; cellobiose PTS system EIIC component D Thethe_01742 phosphotransferase system, mannose/fructose-specific component IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D Thethe_01740 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC K02795 manY; mannose PTS system EIIC component D Thethe_01739 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID K02796 manZ; mannose PTS system EIID component D Thethe_01741 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB K02813 sorB; sorbose PTS system EIIB component [EC:2.7.1.206] D Thethe_02003 phosphotransferase system, mannose/fructose-specific component IIA K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-] D Thethe_02006 PTS system, mannose/fructose/sorbose family, IIB component K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-] D Thethe_02005 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC K02746 agaW; N-acetylgalactosamine PTS system EIIC component D Thethe_02004 PTS system, mannose/fructose/sorbose family, IID component K02747 agaE; N-acetylgalactosamine PTS system EIID component D Thethe_01921 phosphotransferase system mannitol/fructose-specifc IIA component (Ntr-type) K02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200] D Thethe_01920 phosphotransferase system, galactitol-specific IIB component K02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200] D Thethe_01919 phosphotransferase system, galactitol-specific IIC component K02775 gatC; galactitol PTS system EIIC component D Thethe_02528 phosphotransferase system, galactitol-specific IIB component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D Thethe_02527 hypothetical protein K03475 ulaA; ascorbate PTS system EIIC component D Thethe_00904 PTS system unknown substrate IIC component, Fru family K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D Thethe_02605 PTS system D-fructose-specific IICB component (F1P-forming), Frc family K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D Thethe_00903 PTS system IIB component, Fru family K02769 fruAb; fructose PTS system EIIB component [EC:2.7.1.202] D Thethe_01704 PTS system IIA component, Fru family K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202] D Thethe_02607 fructose-1-phosphate kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D Thethe_02606 PTS system D-fructose-specific IIA component (F1P-forming), Frc family K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] C 03070 Bacterial secretion system [PATH:tto03070] D Thethe_01525 protein-export membrane protein, SecD/SecF family K03072 secD; preprotein translocase subunit SecD D Thethe_01524 protein-export membrane protein, SecD/SecF family K03074 secF; preprotein translocase subunit SecF D Thethe_00368 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Thethe_02037 protein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Thethe_00403 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Thethe_01530 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Thethe_02774 preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D Thethe_02243 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Thethe_01452 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Thethe_01439 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] B B 09132 Signal transduction C 02020 Two-component system [PATH:tto02020] D Thethe_01763 PAS domain S-box K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Thethe_01764 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D Thethe_01762 phosphate ABC transporter substrate-binding protein, PhoT family K02040 pstS; phosphate transport system substrate-binding protein D Thethe_02620 signal transduction histidine kinase K07650 cssS; two-component system, OmpR family, sensor histidine kinase CssS [EC:2.7.13.3] D Thethe_02621 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K07770 cssR; two-component system, OmpR family, response regulator CssR D Thethe_00674 trypsin-like serine protease with C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107] D Thethe_01965 trypsin-like serine protease with C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107] D Thethe_00180 trypsin-like serine protease with C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107] D Thethe_02264 flagellin/flagellar hook associated protein K02406 fliC; flagellin D Thethe_01393 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA D Thethe_02228 flagellar motor component K02556 motA; chemotaxis protein MotA D Thethe_01968 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K07775 resD; two-component system, OmpR family, response regulator ResD D Thethe_02716 signal transduction histidine kinase K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3] D Thethe_02717 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K07668 vicR; two-component system, OmpR family, response regulator VicR D Thethe_00001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Thethe_01628 signal transduction histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3] D Thethe_01629 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K18941 arlR; two-component system, OmpR family, response regulator ArlR D Thethe_01870 histidine kinase,HAMP domain-containing protein,histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3] D Thethe_01871 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR D Thethe_01874 gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit K20490 nisF; lantibiotic transport system ATP-binding protein D Thethe_01873 lantibiotic protection ABC transporter permease subunit, MutE/EpiE family K20491 nisE; lantibiotic transport system permease protein D Thethe_01872 lantibiotic protection ABC transporter permease subunit, MutG family K20492 nisG; lantibiotic transport system permease protein D Thethe_00312 signal transduction histidine kinase, nitrogen specific K02491 kinA; two-component system, sporulation sensor kinase A [EC:2.7.13.3] D Thethe_00721 signal transduction histidine kinase, nitrogen specific K13533 kinE; two-component system, sporulation sensor kinase E [EC:2.7.13.3] D Thethe_02594 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F D Thethe_01285 sporulation transcription factor Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A D Thethe_00344 malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D Thethe_02265 carbon storage regulator CsrA K03563 csrA; carbon storage regulator D Thethe_01805 histidine kinase K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3] D Thethe_01804 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07692 degU; two-component system, NarL family, response regulator DegU D Thethe_02803 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D Thethe_02820 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D Thethe_02800 Flp pilus assembly protein, ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Thethe_02817 Flp pilus assembly protein, ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Thethe_02801 Flp pilus assembly protein TadB K12510 tadB; tight adherence protein B D Thethe_02815 hypothetical protein K12511 tadC; tight adherence protein C D Thethe_01829 nitrogen regulatory protein PII K04751 glnB; nitrogen regulatory protein P-II 1 D Thethe_01015 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Thethe_01165 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Thethe_00722 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K07714 atoC; two-component system, NtrC family, response regulator AtoC D Thethe_01663 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Thethe_02045 RNA polymerase, sigma 54 subunit, RpoN/SigL K03092 rpoN; RNA polymerase sigma-54 factor D Thethe_01245 prepilin-type N-terminal cleavage/methylation domain-containing protein K02650 pilA; type IV pilus assembly protein PilA D Thethe_01330 methylase of chemotaxis methyl-accepting protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Thethe_02313 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D Thethe_02551 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D Thethe_02740 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D Thethe_01396 chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW D Thethe_01539 chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW D Thethe_01397 chemotaxis protein histidine kinase-like protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Thethe_01407 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Thethe_02747 cAMP-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Thethe_00946 putative signal transduction protein with a C-terminal ATPase domain K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3] D Thethe_02429 response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K07720 yesN; two-component system, response regulator YesN D Thethe_02132 response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K07720 yesN; two-component system, response regulator YesN D Thethe_00945 response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K07720 yesN; two-component system, response regulator YesN D Thethe_02578 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D Thethe_02271 flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:tto02024] D Thethe_02181 LuxS protein involved in autoinducer AI2 synthesis K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D Thethe_01336 RNA chaperone Hfq K03666 hfq; host factor-I protein D Thethe_01177 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Thethe_01178 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D Thethe_02412 amino acid transporter K20265 gadC; glutamate:GABA antiporter D Thethe_02207 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D Thethe_01844 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Thethe_02208 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Thethe_02209 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Thethe_02210 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Thethe_02211 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Thethe_00639 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Thethe_02747 cAMP-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Thethe_00020 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D Thethe_02413 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein D Thethe_02164 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein D Thethe_02163 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein D Thethe_02162 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K15581 oppB; oligopeptide transport system permease protein D Thethe_02161 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K15582 oppC; oligopeptide transport system permease protein D Thethe_02160 oligopeptide/dipeptide ABC transporter, ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D Thethe_02159 oligopeptide/dipeptide ABC transporter, ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D Thethe_01601 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Thethe_01600 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Thethe_01599 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Thethe_01598 oligopeptide/dipeptide ABC transporter, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D Thethe_01597 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component K02032 ddpF; peptide/nickel transport system ATP-binding protein D Thethe_02774 preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D Thethe_00368 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Thethe_02037 protein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Thethe_00403 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Thethe_01530 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Thethe_02243 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Thethe_01452 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Thethe_01439 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Thethe_01804 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07692 degU; two-component system, NarL family, response regulator DegU D Thethe_02594 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F D Thethe_01285 sporulation transcription factor Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A D Thethe_02212 transcriptional regulator with tetratricopeptide repeat K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR D Thethe_01870 histidine kinase,HAMP domain-containing protein,histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3] D Thethe_01871 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR D Thethe_01874 gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit K20490 nisF; lantibiotic transport system ATP-binding protein D Thethe_01873 lantibiotic protection ABC transporter permease subunit, MutE/EpiE family K20491 nisE; lantibiotic transport system permease protein D Thethe_01872 lantibiotic protection ABC transporter permease subunit, MutG family K20492 nisG; lantibiotic transport system permease protein C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:tto02030] D Thethe_02313 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D Thethe_02551 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D Thethe_02740 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D Thethe_00909 monosaccharide ABC transporter substrate-binding protein, CUT2 family K10439 rbsB; ribose transport system substrate-binding protein D Thethe_01397 chemotaxis protein histidine kinase-like protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Thethe_01396 chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW D Thethe_01539 chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW D Thethe_01407 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Thethe_01395 chemotaxis protein CheC, inhibitor of MCP methylation K03410 cheC; chemotaxis protein CheC D Thethe_01394 chemotaxis protein K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D Thethe_01330 methylase of chemotaxis methyl-accepting protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Thethe_01419 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Thethe_01409 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D Thethe_01408 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Thethe_02228 flagellar motor component K02556 motA; chemotaxis protein MotA D Thethe_02227 flagellar motor protein K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:tto02040] D Thethe_01421 flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D Thethe_01420 flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF K02409 fliF; flagellar M-ring protein FliF D Thethe_01419 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Thethe_01418 flagellar biosynthesis/type III secretory pathway protein K02411 fliH; flagellar assembly protein FliH D Thethe_01417 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Thethe_01416 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D Thethe_01414 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK D Thethe_01410 flagellar basal body-associated protein K02415 fliL; flagellar protein FliL D Thethe_01409 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D Thethe_01408 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Thethe_01406 Flagellar biosynthesis protein, FliO K02418 fliO; flagellar protein FliO/FliZ D Thethe_01405 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Thethe_01404 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D Thethe_01403 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Thethe_01401 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Thethe_01402 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Thethe_01423 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D Thethe_01422 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D Thethe_01413 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD D Thethe_01412 flagellar basal-body rod protein FlgF K02390 flgE; flagellar hook protein FlgE D Thethe_02561 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D Thethe_02560 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D Thethe_02559 Rod binding protein K02395 flgJ; peptidoglycan hydrolase FlgJ D Thethe_02269 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D Thethe_02268 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D Thethe_02264 flagellin/flagellar hook associated protein K02406 fliC; flagellin D Thethe_02256 flagellar capping protein K02407 fliD; flagellar hook-associated protein 2 D Thethe_02255 flagellar biosynthetic protein FliS K02422 fliS; flagellar secretion chaperone FliS D Thethe_02228 flagellar motor component K02556 motA; chemotaxis protein MotA D Thethe_02227 flagellar motor protein K02557 motB; chemotaxis protein MotB D Thethe_02271 flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D Thethe_02034 RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor D Thethe_02045 RNA polymerase, sigma 54 subunit, RpoN/SigL K03092 rpoN; RNA polymerase sigma-54 factor D Thethe_01393 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D Thethe_02039 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism D Thethe_00792 Homocysteine S-methyltransferase/B12 binding domain/Pterin binding enzyme K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:tto01501] D Thethe_02413 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein D Thethe_02164 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein D Thethe_02163 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein D Thethe_02162 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K15581 oppB; oligopeptide transport system permease protein D Thethe_02161 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K15582 oppC; oligopeptide transport system permease protein D Thethe_02160 oligopeptide/dipeptide ABC transporter, ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D Thethe_02159 oligopeptide/dipeptide ABC transporter, ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D Thethe_00518 beta-lactamase class A K17836 penP; beta-lactamase class A [EC:3.5.2.6] D Thethe_02505 beta-lactamase class A K17836 penP; beta-lactamase class A [EC:3.5.2.6] D Thethe_02423 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Thethe_00227 cell division protein FtsI/penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Thethe_01238 cell division protein FtsI/penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Thethe_01071 cell division protein FtsI/penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:tto01502] D Thethe_00207 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Thethe_00528 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Thethe_01780 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D Thethe_01779 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Thethe_01776 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:tto01503] D Thethe_00278 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Thethe_02157 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Thethe_00476 N-acetylmuramoyl-L-alanine amidase CwlD K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Thethe_01129 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Thethe_02595 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Thethe_01957 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Thethe_00674 trypsin-like serine protease with C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107] D Thethe_01965 trypsin-like serine protease with C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107] D Thethe_00180 trypsin-like serine protease with C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:tto01000] C 01001 Protein kinases [BR:tto01001] D Thethe_01486 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Thethe_01056 anti-sigma regulatory factor (Ser/Thr protein kinase) K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1] D Thethe_00971 capsular exopolysaccharide biosynthesis protein K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3] D Thethe_01763 PAS domain S-box K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Thethe_02620 signal transduction histidine kinase K07650 cssS; two-component system, OmpR family, sensor histidine kinase CssS [EC:2.7.13.3] D Thethe_02716 signal transduction histidine kinase K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3] D Thethe_01628 signal transduction histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3] D Thethe_01870 histidine kinase,HAMP domain-containing protein,histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3] D Thethe_01805 histidine kinase K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3] D Thethe_00312 signal transduction histidine kinase, nitrogen specific K02491 kinA; two-component system, sporulation sensor kinase A [EC:2.7.13.3] D Thethe_00721 signal transduction histidine kinase, nitrogen specific K13533 kinE; two-component system, sporulation sensor kinase E [EC:2.7.13.3] D Thethe_01878 putative regulator of cell autolysis K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D Thethe_01397 chemotaxis protein histidine kinase-like protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Thethe_00946 putative signal transduction protein with a C-terminal ATPase domain K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:tto01009] D Thethe_02523 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Thethe_00748 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Thethe_01487 serine/threonine protein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16] C 01002 Peptidases and inhibitors [BR:tto01002] D Thethe_01202 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] D Thethe_01246 prepilin signal peptidase PulO-like peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Thethe_01127 GPR endopeptidase K06012 gpr; spore protease [EC:3.4.24.78] D Thethe_01769 sigma-E processing peptidase SpoIIGA K06383 spoIIGA; stage II sporulation protein GA (sporulation sigma-E factor processing peptidase) [EC:3.4.23.-] D Thethe_02194 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Thethe_00475 putative glycosyl hydrolase K19220 cwlS; peptidoglycan DL-endopeptidase CwlS [EC:3.4.-.-] D Thethe_00685 cell wall-associated hydrolase, invasion-associated protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D Thethe_02190 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Thethe_00491 glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Thethe_01828 asparagine synthase, glutamine-hydrolyzing K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Thethe_02214 CAAX amino terminal protease family K07052 K07052; CAAX protease family protein D Thethe_02215 CAAX amino terminal protease family K07052 K07052; CAAX protease family protein D Thethe_01222 CAAX amino terminal protease family K07052 K07052; CAAX protease family protein D Thethe_00171 CAAX amino terminal protease family K07052 K07052; CAAX protease family protein D Thethe_01638 oligoendopeptidase F K08602 pepF; oligoendopeptidase F [EC:3.4.24.-] D Thethe_00565 Zn-dependent dipeptidase, microsomal dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D Thethe_02573 dipeptidase, putative K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Thethe_00776 peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D Thethe_00405 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D Thethe_01259 Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D Thethe_02080 leucyl aminopeptidase (aminopeptidase T) K19689 ampS; aminopeptidase [EC:3.4.11.-] D Thethe_01022 isoaspartyl dipeptidase IadA K01305 iadA; beta-aspartyl-dipeptidase (metallo-type) [EC:3.4.19.-] D Thethe_00309 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Thethe_00597 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Thethe_00109 ATP-dependent Zn protease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Thethe_01078 Zn-dependent protease K06402 spoIVFB; stage IV sporulation protein FB [EC:3.4.24.-] D Thethe_01382 putative membrane-associated Zn-dependent protease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D Thethe_00674 trypsin-like serine protease with C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107] D Thethe_01965 trypsin-like serine protease with C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107] D Thethe_00180 trypsin-like serine protease with C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107] D Thethe_02202 subtilisin-like serine protease K17734 aprX; serine protease AprX [EC:3.4.21.-] D Thethe_01296 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Thethe_01310 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Thethe_01093 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Thethe_00828 ATP-dependent Clp protease, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D Thethe_00831 ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D Thethe_00830 sigma-54 interacting regulator K04076 lonB; ATP-dependent Lon protease [EC:3.4.21.53] D Thethe_01340 SOS regulatory protein LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D Thethe_01675 SOS response transcriptional repressor, RecA-mediated autopeptidase K01356 lexA; repressor LexA [EC:3.4.21.88] D Thethe_00026 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D Thethe_02693 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D Thethe_00620 C-terminal processing peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D Thethe_02637 C-terminal processing peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D Thethe_02761 cyanophycinase K13282 cphB; cyanophycinase [EC:3.4.15.6] D Thethe_01284 stage IV sporulation protein B K06399 spoIVB; stage IV sporulation protein B [EC:3.4.21.116] D Thethe_01426 ATP-dependent protease HslVU, peptidase subunit K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D Thethe_01810 collagenase-like protease K08303 prtC; U32 family peptidase [EC:3.4.-.-] D Thethe_01237 collagenase-like protease K08303 prtC; U32 family peptidase [EC:3.4.-.-] C 01003 Glycosyltransferases [BR:tto01003] D Thethe_00220 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315] D Thethe_02467 glycogen synthase K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342] D Thethe_02423 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Thethe_00060 glycosyltransferase K20999 pslF; polysaccharide biosynthesis protein PslF D Thethe_00535 exopolysaccharide biosynthesis protein, WecB/TagA/CpsF family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] D Thethe_02579 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Thethe_01289 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Thethe_00549 cellobiose phosphorylase K13688 chvB; cyclic beta-1,2-glucan glucanotransferase [EC:2.4.1.397] D Thethe_02729 glycosyl transferase K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-] C 01005 Lipopolysaccharide biosynthesis proteins [BR:tto01005] D Thethe_02529 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D Thethe_02615 glycosyl transferase K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-] D Thethe_02579 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Thethe_01289 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:tto01011] D Thethe_02576 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Thethe_02712 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Thethe_01775 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Thethe_00728 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Thethe_00173 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D Thethe_01778 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Thethe_01781 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Thethe_00207 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Thethe_00528 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Thethe_02185 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D Thethe_01779 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Thethe_01776 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D Thethe_01653 undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Thethe_00221 membrane-associated phospholipid phosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D Thethe_02384 membrane-associated phospholipid phosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D Thethe_01981 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D Thethe_02555 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D Thethe_02423 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Thethe_00227 cell division protein FtsI/penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Thethe_01238 cell division protein FtsI/penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Thethe_01071 cell division protein FtsI/penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Thethe_00682 cell division protein FtsI/penicillin-binding protein 2 K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) D Thethe_01782 stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) D Thethe_00627 cell division protein FtsI/penicillin-binding protein 2 K05364 pbpA; penicillin-binding protein A D Thethe_01296 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Thethe_01310 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Thethe_01093 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Thethe_00685 cell wall-associated hydrolase, invasion-associated protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D Thethe_00475 putative glycosyl hydrolase K19220 cwlS; peptidoglycan DL-endopeptidase CwlS [EC:3.4.-.-] D Thethe_01046 soluble lytic murein transglycosylase-like protein K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D Thethe_01235 hypothetical protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D Thethe_00198 spore cortex-lytic enzyme K27245 sleB; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D Thethe_01626 putative cell wall hydrolase K27245 sleB; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D Thethe_00258 SpoIID/LytB domain protein K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29] D Thethe_02565 stage II sporulation protein D K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29] D Thethe_01533 SpoIID/LytB domain protein K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29] D Thethe_00278 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Thethe_02157 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Thethe_00476 N-acetylmuramoyl-L-alanine amidase CwlD K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Thethe_01129 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Thethe_02595 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Thethe_01957 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:tto01004] D Thethe_01460 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Thethe_01462 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Thethe_01457 beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Thethe_01459 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Thethe_00058 dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Thethe_02556 beta-hydroxyacyl-(acyl carrier protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Thethe_01461 putative enoyl-(acyl-carrier-protein) reductase II K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9] D Thethe_02545 lysophospholipase L1-like esterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D Thethe_00639 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Thethe_01634 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D Thethe_01463 fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D Thethe_01751 acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Thethe_00578 putative membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Thethe_02106 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Thethe_01326 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Thethe_00488 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases [BR:tto01006] D Thethe_01277 geranylgeranyl pyrophosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D Thethe_01385 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Thethe_01210 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Thethe_01335 tRNA isopentenyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D Thethe_00289 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D Thethe_01647 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] C 01007 Amino acid related enzymes [BR:tto01007] D Thethe_01098 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Thethe_00358 glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D Thethe_02305 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Thethe_01431 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Thethe_00360 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Thethe_00209 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Thethe_00094 protein containing C-terminal region/beta chain of methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Thethe_01174 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Thethe_00995 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Thethe_02420 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Thethe_00329 lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Thethe_01206 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Thethe_01343 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D Thethe_01205 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Thethe_01155 glycyl-tRNA synthetase, dimeric type K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D Thethe_00027 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Thethe_00356 prolyl-tRNA synthetase, family II K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Thethe_01821 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Thethe_01228 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Thethe_01113 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Thethe_01813 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Thethe_01812 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Thethe_01345 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Thethe_02380 aspartate/tyrosine/aromatic aminotransferase K10907 K10907; aminotransferase [EC:2.6.1.-] D Thethe_02424 aspartate/tyrosine/aromatic aminotransferase K10907 K10907; aminotransferase [EC:2.6.1.-] D Thethe_00558 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Thethe_01702 bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Thethe_00240 acetylornithine/succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Thethe_00337 ornithine/acetylornithine aminotransferase K09251 patA; putrescine aminotransferase [EC:2.6.1.82] D Thethe_01593 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D Thethe_01112 branched-chain amino acid aminotransferase, group I K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:tto00194] D Thethe_00840 ATP synthase, F1 epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D Thethe_00839 ATP synthase, F1 beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D Thethe_00838 ATP synthase, F1 gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D Thethe_00837 proton translocating ATP synthase, F1 alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D Thethe_00836 ATP synthase, F1 delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D Thethe_00835 ATP synthase F0 subcomplex B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Thethe_00834 ATP synthase, F0 subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c D Thethe_00833 F0F1-type ATP synthase, alpha subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:tto03000] D Thethe_02608 transcriptional regulator of sugar metabolism K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D Thethe_00451 transcriptional regulator of sugar metabolism K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D Thethe_02563 sporulation transcriptional regulator SpoIIID K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D D Thethe_02291 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Thethe_00204 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Thethe_01946 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Thethe_02533 transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor D Thethe_00640 transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D Thethe_00429 transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor D Thethe_01926 transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor D Thethe_01942 transcriptional regulator K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor D Thethe_02453 transcriptional regulator K26609 exuR; LacI family transcriptional regulator, galacturonate utilization repressor D Thethe_00664 transcriptional regulator K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor D Thethe_02317 transcriptional regulator K03710 K03710; GntR family transcriptional regulator D Thethe_01674 transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D Thethe_02506 transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator D Thethe_00958 transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity D Thethe_01119 transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D Thethe_00821 putative transcriptional regulator K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator D Thethe_01611 putative transcriptional regulator K21902 yfmP; MerR family transcriptional regulator, repressor of the yfmOP operon D Thethe_01232 Fe2+/Zn2+ uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Thethe_02385 Fe2+/Zn2+ uptake regulation protein K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator D Thethe_02048 Fe2+/Zn2+ uptake regulation protein K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator D Thethe_01842 transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D Thethe_02747 cAMP-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Thethe_01212 rrf2 family protein, putative transcriptional regulator K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor D Thethe_00580 putative transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D Thethe_02501 putative transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D Thethe_00799 putative transcriptional regulator K10947 K10947; PadR family transcriptional regulator D Thethe_00248 Mn-dependent transcriptional regulator K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D Thethe_00632 birA, biotin-(acetyl-CoA-carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D Thethe_02212 transcriptional regulator with tetratricopeptide repeat K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR D Thethe_00174 pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor D Thethe_02007 transcriptional antiterminator K19505 gfrR; sigma-54 dependent transcriptional regulator, gfr operon transcriptional activator D Thethe_00616 sugar diacid utilization regulator K02647 cdaR; carbohydrate diacid regulator D Thethe_02226 AT-rich DNA-binding protein K01926 rex; redox-sensing transcriptional repressor D Thethe_01661 AT-rich DNA-binding protein K01926 rex; redox-sensing transcriptional repressor D Thethe_01424 GTP-sensing transcriptional pleiotropic repressor CodY K03706 codY; transcriptional pleiotropic repressor D Thethe_02513 putative transcriptional regulator with CopG/Arc/MetJ DNA-binding domain and metal-binding domain K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator D Thethe_00529 putative transcriptional regulator with CopG/Arc/MetJ DNA-binding domain and metal-binding domain K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI D Thethe_00633 transcriptional antiterminator K03488 licT; beta-glucoside operon transcriptional antiterminator D Thethe_02309 transcriptional antiterminator K03480 glcT; transcriptional antiterminator D Thethe_02175 transcriptional antiterminator K03483 mtlR; mannitol operon transcriptional activator D Thethe_01689 transcriptional antiterminator K03483 mtlR; mannitol operon transcriptional activator D Thethe_02530 transcriptional antiterminator K03483 mtlR; mannitol operon transcriptional activator D Thethe_02479 transcriptional antiterminator K03491 licR; probable licABCH operon transcriptional regulator D Thethe_01797 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D Thethe_01208 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D Thethe_00090 looped-hinge helix DNA binding domain, AbrB family K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D Thethe_00185 stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T D Thethe_02766 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Thethe_02768 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Thethe_00581 glycerol-3-phosphate responsive antiterminator (mRNA-binding) K02443 glpP; glycerol uptake operon antiterminator D Thethe_01282 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D Thethe_00673 transcriptional regulator/sugar kinase K02565 nagC; N-acetylglucosamine repressor D Thethe_01135 heat shock gene repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D Thethe_00346 transcriptional repressor of class III stress genes K03708 ctsR; transcriptional regulator of stress and heat shock response D Thethe_01038 putative stress-responsive transcriptional regulator K03973 pspC; phage shock protein C D Thethe_02044 transcriptional regulator with sigma factor-related N-terminal domain K05311 cggR; central glycolytic genes regulator D Thethe_01514 pyrimidine operon attenuation protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D Thethe_01765 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D Thethe_01785 mraZ protein K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:tto03021] D Thethe_00773 DNA helicase, Rad3 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D Thethe_00591 putative exonuclease of the beta-lactamase fold involved in RNA processing K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] D Thethe_00412 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Thethe_00374 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Thethe_00375 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Thethe_01496 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D Thethe_02034 RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor D Thethe_02521 RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Thethe_02372 RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Thethe_01299 RNA polymerase sigma-F factor K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D Thethe_01239 RNA polymerase, sigma 27/28 subunit, RpsK/SigK K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D Thethe_01767 RNA polymerase, sigma subunit, RpsG/SigG K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D Thethe_01768 RNA polymerase, sigma 29 subunit, SigE K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D Thethe_00364 RNA polymerase sigma-H factor K27000 sigH; RNA polymerase sigma-H factor D Thethe_02045 RNA polymerase, sigma 54 subunit, RpoN/SigL K03092 rpoN; RNA polymerase sigma-54 factor D Thethe_01393 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA D Thethe_01377 transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA D Thethe_01273 transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D Thethe_00969 transcription antiterminator K02601 nusG; transcription termination/antitermination protein NusG D Thethe_00369 transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG D Thethe_01056 anti-sigma regulatory factor (Ser/Thr protein kinase) K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1] D Thethe_00789 Positive regulator of sigma E activity K03803 rseC; sigma-E factor negative regulatory protein RseC D Thethe_00328 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D Thethe_02591 transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:tto03019] D Thethe_00591 putative exonuclease of the beta-lactamase fold involved in RNA processing K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] D Thethe_01081 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-] D Thethe_01456 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Thethe_01233 hypothetical protein K12574 rnj; ribonuclease J [EC:3.1.-.-] D Thethe_01349 hypothetical protein K18682 rny; ribonucrease Y [EC:3.1.-.-] D Thethe_01161 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Thethe_00126 DNA/RNA helicase, superfamily II K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Thethe_02039 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Thethe_01368 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D Thethe_02591 transcription termination factor Rho K03628 rho; transcription termination factor Rho D Thethe_02523 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Thethe_00748 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Thethe_01137 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Thethe_00592 molecular chaperone K04043 dnaK; molecular chaperone DnaK D Thethe_02196 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Thethe_01336 RNA chaperone Hfq K03666 hfq; host factor-I protein D Thethe_00093 tRNA nucleotidyltransferase/poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D Thethe_02265 carbon storage regulator CsrA K03563 csrA; carbon storage regulator D Thethe_00730 putative P-loop-containing kinase K06958 rapZ; RNase adapter protein RapZ C 03041 Spliceosome C 03011 Ribosome [BR:tto03011] D Thethe_02793 ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D Thethe_01390 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D Thethe_00389 ribosomal protein S3, bacterial type K02982 RP-S3; small subunit ribosomal protein S3 D Thethe_00411 ribosomal protein S4, bacterial/organelle type K02986 RP-S4; small subunit ribosomal protein S4 D Thethe_00777 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4 D Thethe_00400 ribosomal protein S5, bacterial/organelle type K02988 RP-S5; small subunit ribosomal protein S5 D Thethe_02755 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D Thethe_00379 ribosomal protein S7, bacterial/organelle K02992 RP-S7; small subunit ribosomal protein S7 D Thethe_00397 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D Thethe_00419 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D Thethe_00382 ribosomal protein S10, bacterial/organelle K02946 RP-S10; small subunit ribosomal protein S10 D Thethe_00410 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D Thethe_00378 ribosomal protein S12, bacterial/organelle K02950 RP-S12; small subunit ribosomal protein S12 D Thethe_00409 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D Thethe_00396 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D Thethe_01369 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D Thethe_01438 SSU ribosomal protein S16P K02959 RP-S16; small subunit ribosomal protein S16 D Thethe_00392 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D Thethe_02753 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D Thethe_00387 ribosomal protein S19, bacterial/organelle K02965 RP-S19; small subunit ribosomal protein S19 D Thethe_01125 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D Thethe_01143 ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D Thethe_00371 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D Thethe_00386 ribosomal protein L2, bacterial/organellar K02886 RP-L2; large subunit ribosomal protein L2 D Thethe_00383 50S ribosomal protein L3, bacterial K02906 RP-L3; large subunit ribosomal protein L3 D Thethe_00384 50S ribosomal protein L4, bacterial/organelle K02926 RP-L4; large subunit ribosomal protein L4 D Thethe_00395 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D Thethe_00398 ribosomal protein L6, bacterial type K02933 RP-L6; large subunit ribosomal protein L6 D Thethe_02749 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D Thethe_00372 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D Thethe_00370 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11 D Thethe_00373 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D Thethe_00418 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13 D Thethe_00393 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14 D Thethe_00402 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15 D Thethe_00390 ribosomal protein L16, bacterial/organelle K02878 RP-L16; large subunit ribosomal protein L16 D Thethe_00413 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D Thethe_00399 ribosomal protein L18, bacterial type K02881 RP-L18; large subunit ribosomal protein L18 D Thethe_01434 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D Thethe_01815 LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20 D Thethe_01082 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D Thethe_00388 ribosomal protein L22, bacterial type K02890 RP-L22; large subunit ribosomal protein L22 D Thethe_00385 ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D Thethe_00394 ribosomal protein L24, bacterial/organelle K02895 RP-L24; large subunit ribosomal protein L24 D Thethe_01084 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D Thethe_01480 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D Thethe_00391 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D Thethe_00401 ribosomal protein L30, bacterial/organelle K02907 RP-L30; large subunit ribosomal protein L30 D Thethe_02590 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D Thethe_01465 LSU ribosomal protein L32P K02911 RP-L32; large subunit ribosomal protein L32 D Thethe_00367 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D Thethe_02777 ribosomal protein L34, bacterial type K02914 RP-L34; large subunit ribosomal protein L34 D Thethe_01816 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D Thethe_00408 LSU ribosomal protein L36P K02919 RP-L36; large subunit ribosomal protein L36 D Thethe_00607 ribosomal protein L25, Ctc-form K02897 RP-L25; large subunit ribosomal protein L25 D Thethe_00377 ribosomal protein HS6-type (S12/L30/L7a) K07590 RP-L7A; large subunit ribosomal protein L7A D Thethe_00072 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Thethe_01504 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Thethe_00547 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Thethe_00420 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Thethe_00545 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Thethe_01506 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Thethe_00070 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Thethe_00053 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Thethe_00422 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Thethe_00071 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Thethe_00546 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Thethe_01505 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Thethe_00054 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:tto03009] D Thethe_01456 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Thethe_01151 GTP-binding protein Era K03595 era; GTPase D Thethe_01086 Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-] D Thethe_01377 transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA D Thethe_01273 transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D Thethe_00969 transcription antiterminator K02601 nusG; transcription termination/antitermination protein NusG D Thethe_00369 transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG D Thethe_00062 pseudouridine synthase family protein K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D Thethe_00102 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D Thethe_01489 ribosomal RNA small subunit methyltransferase RsmB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Thethe_01473 RNA methyltransferase, RsmD family K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D Thethe_01140 RNA methyltransferase, RsmE family K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D Thethe_02770 16S rRNA m(7)G-527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D Thethe_01784 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D Thethe_00088 putative S-adenosylmethionine-dependent methyltransferase, YraL family K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D Thethe_01280 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D Thethe_00362 rRNA methylase, putative, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D Thethe_02709 rRNA large subunit m3Psi methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D Thethe_01507 putative SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D Thethe_01488 23S rRNA m(2)A-2503 methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D Thethe_00752 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D Thethe_00798 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D Thethe_01313 pseudouridine synthase family protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D Thethe_01203 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Thethe_02077 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Thethe_02232 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D Thethe_01436 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D Thethe_01359 SSU ribosomal protein S12P methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D Thethe_01139 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D Thethe_01081 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-] D Thethe_01230 RNAse H-fold protein YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D Thethe_00361 hypothetical protein K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-] D Thethe_00126 DNA/RNA helicase, superfamily II K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Thethe_01485 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D Thethe_01752 ribosome-associated GTPase EngA K03977 engA; GTPase D Thethe_01433 ribosome biogenesis GTP-binding protein YlqF K14540 rbgA; ribosome biogenesis GTPase A D Thethe_01549 GTP-binding protein HflX K03665 hflX; GTPase D Thethe_02584 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Thethe_01519 (p)ppGpp synthetase, RelA/SpoT family K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D Thethe_01373 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D Thethe_01378 hypothetical protein K09748 rimP; ribosome maturation factor RimP D Thethe_00003 hypothetical protein K14761 rlbA; ribosome-associated protein D Thethe_01089 iojap-like ribosome-associated protein K09710 ybeB; ribosome-associated protein D Thethe_01149 metalloprotein, YbeY/UPF0054 family K07042 ybeY; probable rRNA maturation factor D Thethe_02249 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor D Thethe_01789 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase D Thethe_01466 putative metal-binding protein, possibly nucleic-acid binding protein K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:tto03016] D Thethe_00826 RNAse Z K00784 rnz; ribonuclease Z [EC:3.1.26.11] D Thethe_02864 tRNA nucleotidyltransferase/poly(A) polymerase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D Thethe_02918 hypothetical protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8] D Thethe_01098 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Thethe_00356 prolyl-tRNA synthetase, family II K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Thethe_01174 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Thethe_02420 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Thethe_00094 protein containing C-terminal region/beta chain of methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Thethe_00209 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Thethe_00329 lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Thethe_01206 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Thethe_01228 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Thethe_01113 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Thethe_01343 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D Thethe_01155 glycyl-tRNA synthetase, dimeric type K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D Thethe_01821 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Thethe_00027 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Thethe_00360 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Thethe_00995 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Thethe_01205 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Thethe_01813 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Thethe_01812 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Thethe_02305 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Thethe_01431 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Thethe_01518 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D Thethe_01142 HIT family hydrolase, diadenosine tetraphosphate hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Thethe_00417 pseudouridylate synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D Thethe_01371 tRNA pseudouridine 55 synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D Thethe_01213 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Thethe_01791 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Thethe_02584 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Thethe_01335 tRNA isopentenyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D Thethe_02772 tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D Thethe_02771 glucose-inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D Thethe_02776 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D Thethe_02029 Bacterial RNase P class A K01978 rnpB; M1 RNA D Thethe_02156 ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D Thethe_01502 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D Thethe_00358 glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D Thethe_00037 cytosine/adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D Thethe_02395 tRNA-U20-dihydrouridine synthase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D Thethe_01331 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D Thethe_01141 MiaB-like tRNA modifying enzyme K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5] D Thethe_01435 tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D Thethe_02031 putative SAM-dependent methyltransferase K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217] D Thethe_02497 putative rRNA methylase SpoU family K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D Thethe_01814 rRNA methylase K03437 spoU; RNA methyltransferase, TrmH family D Thethe_02028 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D Thethe_01532 S-adenosylmethionine--tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D Thethe_00333 queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D Thethe_02087 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D Thethe_02051 uncharacterized Fe-S protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D Thethe_01004 hypothetical protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D Thethe_01531 tRNA-guanine transglycosylase, queuosine-34-forming K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D Thethe_01790 thiazole biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D Thethe_00307 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D Thethe_02233 universal bacterial protein YeaZ K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D Thethe_02231 putative glycoprotease GCP K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D Thethe_02234 ATPase, YjeE family K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D Thethe_01207 dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase D Thethe_01469 putative nucleotidyltransferase K27343 tmcAL; tRNA(Met) cytidine acetate ligase [EC:6.3.4.-] D Thethe_01161 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Thethe_01368 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:tto03012] D Thethe_01374 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D Thethe_01817 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D Thethe_02229 ATPase component of ABC transporters with duplicated ATPase domain K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D Thethe_01389 translation elongation factor Ts K02357 tsf; elongation factor Ts D Thethe_00381 translation elongation factor TU K02358 tuf; elongation factor Tu D Thethe_00366 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu D Thethe_00343 translation elongation factor EF-G K02355 fusA; elongation factor G D Thethe_00380 translation elongation factor EF-G K02355 fusA; elongation factor G D Thethe_02586 peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D Thethe_01387 ribosome recycling factor K02838 frr; ribosome recycling factor D Thethe_02587 protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D Thethe_00181 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D Thethe_00407 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D Thethe_01260 translation elongation factor P K02356 efp; elongation factor P C 03110 Chaperones and folding catalysts [BR:tto03110] D Thethe_00349 ATPase with chaperone activity, ATP-binding subunit K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC D Thethe_00829 endopeptidase Clp ATP-binding regulatory subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D Thethe_01425 ATP-dependent protease HslVU, ATPase subunit K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D Thethe_01137 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Thethe_00592 molecular chaperone K04043 dnaK; molecular chaperone DnaK D Thethe_02196 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Thethe_01138 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D Thethe_02332 DnaJ-class molecular chaperone with C-terminal Zn finger domain K03686 dnaJ; molecular chaperone DnaJ D Thethe_01136 molecular chaperone GrpE (heat shock protein) K03687 GRPE; molecular chaperone GrpE D Thethe_00170 molecular chaperone (small heat shock protein) K13993 HSP20; HSP20 family protein D Thethe_02680 Co-chaperonin GroES K04078 groES; chaperonin GroES D Thethe_02197 Co-chaperonin GroES K04078 groES; chaperonin GroES D Thethe_00674 trypsin-like serine protease with C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107] D Thethe_01965 trypsin-like serine protease with C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107] D Thethe_00180 trypsin-like serine protease with C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107] D Thethe_00309 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Thethe_00597 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Thethe_00109 ATP-dependent Zn protease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Thethe_00833 F0F1-type ATP synthase, alpha subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Thethe_00118 hydrogenase nickel insertion protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF D Thethe_00119 hydrogenase accessory protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB D Thethe_00184 parvulin-like peptidyl-prolyl isomerase K07533 prsA; foldase protein PrsA [EC:5.2.1.8] D Thethe_01209 thioredoxin K03671 TXN; thioredoxin D Thethe_01618 thioredoxin K03671 TXN; thioredoxin C 04131 Membrane trafficking [BR:tto04131] D Thethe_00982 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Thethe_01625 putative membrane protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D Thethe_02043 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Thethe_00749 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] C 04121 Ubiquitin system C 03051 Proteasome C 03032 DNA replication proteins [BR:tto03032] D Thethe_01338 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Thethe_00256 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Thethe_02837 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Thethe_00001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Thethe_02748 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D Thethe_02721 DNA replication protein K02315 dnaC; DNA replication protein DnaC D Thethe_02035 DNA primase, catalytic core K02316 dnaG; DNA primase [EC:2.7.7.101] D Thethe_02845 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Thethe_02754 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Thethe_00746 DNA-directed DNA polymerase III PolC K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Thethe_01379 DNA polymerase III, alpha chain K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D Thethe_00002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Thethe_02847 DNA polymerase sliding clamp subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Thethe_01124 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Thethe_00081 DNA polymerase III, delta'' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Thethe_00042 DNA polymerase III, subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Thethe_01429 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Thethe_02168 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Thethe_00009 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D Thethe_00008 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Thethe_01427 DNA topoisomerase I, bacterial K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:tto03036] D Thethe_01456 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Thethe_00256 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Thethe_02837 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Thethe_00001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Thethe_01336 RNA chaperone Hfq K03666 hfq; host factor-I protein D Thethe_01453 chromosome segregation protein SMC K03529 smc; chromosome segregation protein D Thethe_01306 hypothetical protein K05896 scpA; segregation and condensation protein A D Thethe_01307 segregation and condensation protein B K06024 scpB; segregation and condensation protein B D Thethe_01771 cell division protein FtsA K03590 ftsA; cell division protein FtsA D Thethe_00263 Septum formation initiator K13052 divIC; cell division protein DivIC D Thethe_00617 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D Thethe_01360 DNA segregation ATPase, FtsK/SpoIIIE family K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D Thethe_02832 DNA segregation ATPase, FtsK/SpoIIIE family K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D Thethe_01783 protein required for the initiation of cell division K03586 ftsL; cell division protein FtsL D Thethe_01774 cell division septal protein K03589 ftsQ; cell division protein FtsQ D Thethe_01777 cell division protein FtsW K03588 ftsW; cell division protein FtsW D Thethe_00618 cell division protein K09811 ftsX; cell division transport system permease protein D Thethe_01770 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Thethe_01811 hypothetical protein K09888 zapA; cell division protein ZapA D Thethe_00278 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Thethe_02157 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Thethe_00476 N-acetylmuramoyl-L-alanine amidase CwlD K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Thethe_01129 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Thethe_02595 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Thethe_01957 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Thethe_01072 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D Thethe_01073 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D Thethe_01074 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D Thethe_01172 DivIVA domain protein K04074 divIVA; cell division initiation protein D Thethe_01169 hypothetical protein K09772 sepF; cell division inhibitor SepF D Thethe_02562 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Thethe_01068 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Thethe_01069 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D Thethe_01070 rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D Thethe_01075 cell elongation-specific peptidoglycan biosynthesis regulator RodA K05837 rodA; rod shape determining protein RodA D Thethe_02767 ATPase involved in chromosome partitioning K03496 parA; chromosome partitioning protein D Thethe_02766 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Thethe_02768 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Thethe_02771 glucose-inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D Thethe_02770 16S rRNA m(7)G-527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D Thethe_01295 site-specific recombinase XerD K04763 xerD; integrase/recombinase XerD D Thethe_00443 site-specific recombinase XerD K04763 xerD; integrase/recombinase XerD D Thethe_00445 site-specific recombinase XerD K04763 xerD; integrase/recombinase XerD D Thethe_02910 site-specific recombinase XerD K04763 xerD; integrase/recombinase XerD D Thethe_00255 MazG family protein K02499 yabN; tetrapyrrole methylase family protein / MazG family protein D Thethe_00106 ATPase involved in chromosome partitioning K03593 mrp; ATP-binding protein involved in chromosome partitioning D Thethe_00832 ribosome biogenesis GTP-binding protein YsxC/EngB K03978 engB; GTP-binding protein D Thethe_00743 hypothetical protein K09762 whiA; cell division protein WhiA C 03400 DNA repair and recombination proteins [BR:tto03400] D Thethe_00218 O-6-methylguanine DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Thethe_02221 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] D Thethe_02050 endonuclease III; DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Thethe_00773 DNA helicase, Rad3 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D Thethe_02769 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Thethe_01365 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Thethe_02827 dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Thethe_00069 uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D Thethe_00074 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D Thethe_00825 apurinic endonuclease APN1 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D Thethe_01521 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Thethe_02168 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Thethe_00624 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A D Thethe_00623 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D Thethe_00628 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D Thethe_02540 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Thethe_00522 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Thethe_02169 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Thethe_00374 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Thethe_00375 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Thethe_00412 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Thethe_01496 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D Thethe_00183 transcription-repair coupling factor Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D Thethe_01333 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Thethe_01809 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2 D Thethe_01334 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Thethe_01275 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D Thethe_01276 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D Thethe_00746 DNA-directed DNA polymerase III PolC K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Thethe_01379 DNA polymerase III, alpha chain K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D Thethe_00002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Thethe_02847 DNA polymerase sliding clamp subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Thethe_01124 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Thethe_00081 DNA polymerase III, delta'' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Thethe_00042 DNA polymerase III, subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Thethe_02845 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Thethe_02754 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Thethe_02274 helicase, putative, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D Thethe_02902 ATP-dependent exoDNAse (exonuclease V), alpha subunit/helicase superfamily I member K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D Thethe_01356 protein RecA K03553 recA; recombination protein RecA D Thethe_01536 Holliday junction DNA helicase subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA D Thethe_01535 Holliday junction DNA helicase subunit RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D Thethe_01537 Holliday junction endonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D Thethe_01494 replication restart DNA helicase PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D Thethe_01350 ATPase involved in DNA repair K03546 sbcC; DNA repair protein SbcC/Rad50 D Thethe_01351 Exodeoxyribonuclease I subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D Thethe_00350 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D Thethe_00004 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D Thethe_01477 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Thethe_00923 putative transcriptional regulator with HTH domain K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Thethe_01153 DNA replication and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D Thethe_00044 DNA replication and repair protein RecR K06187 recR; recombination protein RecR D Thethe_01283 DNA replication and repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D Thethe_02656 CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D Thethe_00684 Ku protein K10979 ku; DNA end-binding protein Ku D Thethe_00683 ATP dependent DNA ligase-like protein,ATP dependent DNA ligase family protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D Thethe_00009 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D Thethe_00008 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Thethe_01427 DNA topoisomerase I, bacterial K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D Thethe_00256 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Thethe_02837 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Thethe_02500 nucleotidyltransferase/DNA polymerase involved in DNA repair K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D Thethe_00489 nucleotidyltransferase/DNA polymerase involved in DNA repair K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D Thethe_01340 SOS regulatory protein LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D Thethe_01675 SOS response transcriptional repressor, RecA-mediated autopeptidase K01356 lexA; repressor LexA [EC:3.4.21.88] D Thethe_01355 hypothetical protein K03565 recX; regulatory protein D Thethe_00704 DNA polymerase IV (family X) K02347 polX; DNA polymerase (family X) D Thethe_00339 ribonucleoside-diphosphate reductase class II K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Thethe_01372 exopolyphosphatase-like enzyme K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] C 03029 Mitochondrial biogenesis [BR:tto03029] D Thethe_01374 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D Thethe_01817 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D Thethe_01389 translation elongation factor Ts K02357 tsf; elongation factor Ts D Thethe_00381 translation elongation factor TU K02358 tuf; elongation factor Tu D Thethe_00366 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu D Thethe_00343 translation elongation factor EF-G K02355 fusA; elongation factor G D Thethe_00380 translation elongation factor EF-G K02355 fusA; elongation factor G D Thethe_01151 GTP-binding protein Era K03595 era; GTPase D Thethe_02305 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Thethe_02420 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Thethe_01206 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Thethe_01155 glycyl-tRNA synthetase, dimeric type K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D Thethe_00209 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Thethe_02166 glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D Thethe_02165 glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D Thethe_02167 glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D Thethe_02845 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Thethe_02754 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Thethe_01137 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Thethe_00592 molecular chaperone K04043 dnaK; molecular chaperone DnaK D Thethe_01136 molecular chaperone GrpE (heat shock protein) K03687 GRPE; molecular chaperone GrpE D Thethe_02196 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Thethe_02680 Co-chaperonin GroES K04078 groES; chaperonin GroES D Thethe_02197 Co-chaperonin GroES K04078 groES; chaperonin GroES D Thethe_01138 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D Thethe_02332 DnaJ-class molecular chaperone with C-terminal Zn finger domain K03686 dnaJ; molecular chaperone DnaJ D Thethe_01213 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Thethe_01791 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Thethe_00106 ATPase involved in chromosome partitioning K03593 mrp; ATP-binding protein involved in chromosome partitioning D Thethe_02774 preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:tto02000] D Thethe_02602 ABC-type multidrug transport system, ATPase and permease component K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump D Thethe_02557 ABC-type multidrug transport system, ATPase and permease component K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump D Thethe_02601 ABC-type multidrug transport system, ATPase and permease component K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump D Thethe_02558 ABC-type multidrug transport system, ATPase and permease component K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump D Thethe_02647 ABC-type multidrug transport system, ATPase and permease component K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D Thethe_02646 ABC-type multidrug transport system, ATPase and permease component K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D Thethe_02213 ABC-type bacteriocin/lantibiotic exporter with N-terminal double-glycine peptidase domain K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D Thethe_01867 ABC-type multidrug transport system, ATPase and permease component K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D Thethe_01218 ABC-type bacteriocin/lantibiotic exporter with N-terminal double-glycine peptidase domain K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D Thethe_01604 ABC-type bacteriocin/lantibiotic exporter with N-terminal double-glycine peptidase domain K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D Thethe_01857 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D Thethe_01858 molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein D Thethe_01570 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K15553 ssuA; sulfonate transport system substrate-binding protein D Thethe_01559 ABC transporter, substrate-binding protein, aliphatic sulfonates family K15553 ssuA; sulfonate transport system substrate-binding protein D Thethe_01569 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K15554 ssuC; sulfonate transport system permease protein D Thethe_01557 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K15554 ssuC; sulfonate transport system permease protein D Thethe_01568 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Thethe_01558 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Thethe_02654 periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) K05845 opuC; osmoprotectant transport system substrate-binding protein D Thethe_02653 ABC-type proline/glycine betaine transport system, permease component K05846 opuBD; osmoprotectant transport system permease protein D Thethe_02652 glycine betaine/L-proline transport ATP binding subunit K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D Thethe_01645 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D Thethe_00846 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D Thethe_00631 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D Thethe_01643 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K02050 ABC.SN.P; NitT/TauT family transport system permease protein D Thethe_00844 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K02050 ABC.SN.P; NitT/TauT family transport system permease protein D Thethe_00629 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D Thethe_01644 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D Thethe_00845 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D Thethe_00610 carbohydrate ABC transporter ATP-binding protein, CUT1 family K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Thethe_00732 ABC-type sugar transport system, periplasmic component K25086 musE; maltose transport system substrate-binding protein D Thethe_01935 carbohydrate ABC transporter substrate-binding protein, CUT1 family K25086 musE; maltose transport system substrate-binding protein D Thethe_00733 permease component of ABC-type sugar transporter K25087 musF; maltose transport system permease protein D Thethe_01934 permease component of ABC-type sugar transporter K25087 musF; maltose transport system permease protein D Thethe_00734 ABC-type sugar transport system, permease component K25088 musG; maltose transport system permease protein D Thethe_01933 carbohydrate ABC transporter membrane protein 2, CUT1 family K25088 musG; maltose transport system permease protein D Thethe_00735 carbohydrate ABC transporter substrate-binding protein, CUT1 family K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein D Thethe_00736 carbohydrate ABC transporter membrane protein 1, CUT1 family K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D Thethe_00737 carbohydrate ABC transporter membrane protein 2, CUT1 family K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D Thethe_00432 carbohydrate ABC transporter substrate-binding protein, CUT1 family K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein D Thethe_00947 ABC-type sugar transport system, periplasmic component K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein D Thethe_00433 carbohydrate ABC transporter membrane protein 1, CUT1 family K10118 msmF; raffinose/stachyose/melibiose transport system permease protein D Thethe_00948 permease component of ABC-type sugar transporter K10118 msmF; raffinose/stachyose/melibiose transport system permease protein D Thethe_00434 carbohydrate ABC transporter membrane protein 2, CUT1 family K10119 msmG; raffinose/stachyose/melibiose transport system permease protein D Thethe_00949 ABC-type sugar transport system, permease component K10119 msmG; raffinose/stachyose/melibiose transport system permease protein D Thethe_01905 carbohydrate ABC transporter substrate-binding protein, CUT1 family K17244 chiE; putative chitobiose transport system substrate-binding protein D Thethe_01904 carbohydrate ABC transporter membrane protein 1, CUT1 family K17245 chiF; putative chitobiose transport system permease protein D Thethe_01903 carbohydrate ABC transporter membrane protein 2, CUT1 family K17246 chiG; putative chitobiose transport system permease protein D Thethe_02451 ABC-type sugar transport system, periplasmic component K10192 togB; oligogalacturonide transport system substrate-binding protein D Thethe_02450 carbohydrate ABC transporter membrane protein 1, CUT1 family K10193 togM; oligogalacturonide transport system permease protein D Thethe_02449 ABC-type sugar transport system, permease component K10194 togN; oligogalacturonide transport system permease protein D Thethe_00937 carbohydrate ABC transporter substrate-binding protein, CUT1 family K17318 lplA; putative aldouronate transport system substrate-binding protein D Thethe_00935 ABC-type polysaccharide transport system, permease component K17319 lplB; putative aldouronate transport system permease protein D Thethe_00936 ABC-type sugar transport system, permease component K17320 lplC; putative aldouronate transport system permease protein D Thethe_02427 ABC-type xylose transport system, periplasmic component K10543 xylF; D-xylose transport system substrate-binding protein D Thethe_02428 ABC-type xylose transport system, periplasmic component K10543 xylF; D-xylose transport system substrate-binding protein D Thethe_02425 ABC-type xylose transport system, permease component K10544 xylH; D-xylose transport system permease protein D Thethe_02426 ABC-type sugar transport system, ATPase component K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10] D Thethe_00909 monosaccharide ABC transporter substrate-binding protein, CUT2 family K10439 rbsB; ribose transport system substrate-binding protein D Thethe_00910 permease component of ribose/xylose/arabinose/galactoside ABC-type transporters K10440 rbsC; ribose transport system permease protein D Thethe_00912 permease component of ribose/xylose/arabinose/galactoside ABC-type transporters K10440 rbsC; ribose transport system permease protein D Thethe_00911 ABC-type sugar transport system, ATPase component K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D Thethe_00654 ABC-type sugar transport system, periplasmic component K17234 araN; arabinooligosaccharide transport system substrate-binding protein D Thethe_00655 permease component of ABC-type sugar transporter K17235 araP; arabinooligosaccharide transport system permease protein D Thethe_00656 ABC-type sugar transport system, permease component K17236 araQ; arabinooligosaccharide transport system permease protein D Thethe_02321 putative ABC-type transport system, periplasmic component/surface lipoprotein K07335 bmpA; basic membrane protein A and related proteins D Thethe_02319 ABC-type uncharacterized transport system, permease component K23535 nupB; general nucleoside transport system permease protein D Thethe_02318 putative ABC-type transport system, permease component K23536 nupC; general nucleoside transport system permease protein D Thethe_02320 ATPase component of uncharacterized ABC-type transporter K23537 nupA; general nucleoside transport system ATP-binding protein D Thethe_01987 TIGR00245 family protein K02069 STAR2; UDP-glucose/iron transport system permease protein D Thethe_01988 ABC-type phosphate transport system, ATPase component K02068 STAR1; UDP-glucose/iron transport system ATP-binding protein D Thethe_01728 ABC-type sugar transport system, periplasmic component K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D Thethe_01941 ABC-type sugar transport system, periplasmic component K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D Thethe_00677 ABC-type sugar transport system, periplasmic component K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D Thethe_01913 carbohydrate ABC transporter substrate-binding protein, CUT1 family K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D Thethe_00201 carbohydrate ABC transporter substrate-binding protein, CUT1 family K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D Thethe_01727 permease component of ABC-type sugar transporter K02025 ABC.MS.P; multiple sugar transport system permease protein D Thethe_00202 carbohydrate ABC transporter membrane protein 1, CUT1 family K02025 ABC.MS.P; multiple sugar transport system permease protein D Thethe_01912 carbohydrate ABC transporter membrane protein 1, CUT1 family K02025 ABC.MS.P; multiple sugar transport system permease protein D Thethe_01940 carbohydrate ABC transporter membrane protein 1, CUT1 family K02025 ABC.MS.P; multiple sugar transport system permease protein D Thethe_01726 ABC-type sugar transport system, permease component K02026 ABC.MS.P1; multiple sugar transport system permease protein D Thethe_00203 ABC-type sugar transport system, permease component K02026 ABC.MS.P1; multiple sugar transport system permease protein D Thethe_01911 carbohydrate ABC transporter membrane protein 2, CUT1 family K02026 ABC.MS.P1; multiple sugar transport system permease protein D Thethe_01939 carbohydrate ABC transporter membrane protein 2, CUT1 family K02026 ABC.MS.P1; multiple sugar transport system permease protein D Thethe_01762 phosphate ABC transporter substrate-binding protein, PhoT family K02040 pstS; phosphate transport system substrate-binding protein D Thethe_01761 phosphate ABC transporter membrane protein 1, PhoT family K02037 pstC; phosphate transport system permease protein D Thethe_01760 phosphate ABC transporter membrane protein 2, PhoT family K02038 pstA; phosphate transport system permease protein D Thethe_01759 phosphate ABC transporter ATP-binding protein, PhoT family K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Thethe_02252 amino acid ABC transporter substrate-binding protein, PAAT family K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein D Thethe_02251 amino acid ABC transporter membrane protein, PAAT family K17077 artQ; arginine/lysine/histidine transport system permease protein D Thethe_02250 amino acid ABC transporter ATP-binding protein, PAAT family K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1] D Thethe_02207 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D Thethe_01844 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Thethe_02208 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Thethe_02209 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Thethe_02210 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Thethe_02211 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Thethe_02179 lipoprotein, YaeC family K02073 metQ; D-methionine transport system substrate-binding protein D Thethe_01572 ABC-type metal ion transport system, periplasmic component/surface antigen K02073 metQ; D-methionine transport system substrate-binding protein D Thethe_02178 ABC-type metal ion transport system, permease component K02072 metI; D-methionine transport system permease protein D Thethe_01573 ABC-type metal ion transport system, permease component K02072 metI; D-methionine transport system permease protein D Thethe_02177 ABC-type metal ion transport system, ATPase component K02071 metN; D-methionine transport system ATP-binding protein D Thethe_01574 ABC-type metal ion transport system, ATPase component K02071 metN; D-methionine transport system ATP-binding protein D Thethe_02206 ABC-type uncharacterized transport system, periplasmic component K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein D Thethe_02205 ABC-type uncharacterized transport system, permease component K05832 K05832; putative tryptophan/tyrosine transport system permease protein D Thethe_02204 ABC-type uncharacterized transport system, ATPase component K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein D Thethe_02413 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein D Thethe_02164 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein D Thethe_02163 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein D Thethe_02162 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K15581 oppB; oligopeptide transport system permease protein D Thethe_02161 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K15582 oppC; oligopeptide transport system permease protein D Thethe_02160 oligopeptide/dipeptide ABC transporter, ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D Thethe_02159 oligopeptide/dipeptide ABC transporter, ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D Thethe_01601 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Thethe_01600 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Thethe_01599 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Thethe_01598 oligopeptide/dipeptide ABC transporter, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D Thethe_01597 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component K02032 ddpF; peptide/nickel transport system ATP-binding protein D Thethe_02347 ABC-type Fe3+-hydroxamate transport system, periplasmic component K25034 btuF; cobalamin transport system substrate-binding protein D Thethe_02346 ABC-type Fe3+-siderophore transport system, permease component K25027 btuC; cobalamin transport system permease protein D Thethe_02345 ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8] D Thethe_02386 ABC-type metal ion transport system, periplasmic component/surface adhesin K09815 znuA; zinc transport system substrate-binding protein D Thethe_02388 ABC-type Mn2+/Zn2+ transport system, permease component K09816 znuB; zinc transport system permease protein D Thethe_02387 ATPase component of Mn/Zn ABC-type transporter K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D Thethe_02515 hypothetical protein K02009 cbiN; cobalt/nickel transport protein D Thethe_02516 cobalt ABC transporter, permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D Thethe_02514 ABC-type Co2+ transport system, permease component K02007 cbiM; cobalt/nickel transport system permease protein D Thethe_02517 ABC-type cobalt transport system, ATPase component K02006 cbiO; cobalt/nickel transport system ATP-binding protein D Thethe_00994 hypothetical protein K03523 bioY; biotin transport system substrate-specific component D Thethe_00416 ABC-type cobalt transport system, permease component CbiQ K16785 ecfT; energy-coupling factor transport system permease protein D Thethe_00414 ABC-type cobalt transport system, ATPase component K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D Thethe_00415 ABC-type cobalt transport system, ATPase component K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D Thethe_01873 lantibiotic protection ABC transporter permease subunit, MutE/EpiE family K20491 nisE; lantibiotic transport system permease protein D Thethe_01872 lantibiotic protection ABC transporter permease subunit, MutG family K20492 nisG; lantibiotic transport system permease protein D Thethe_01874 gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit K20490 nisF; lantibiotic transport system ATP-binding protein D Thethe_00603 ABC-2 type transporter K25151 gldF; gliding motility-associated transport system permease protein D Thethe_00604 ABC-type multidrug transport system, ATPase component K25152 gldA; gliding motility-associated transport system ATP-binding protein D Thethe_00602 ABC-type uncharacterized transporter K25153 gldG; gliding motility-associatede transport system auxiliary component D Thethe_00282 ABC-type multidrug transport system, permease component K25181 ybhS; drug efflux transport system permease protein D Thethe_00283 ABC-type multidrug transport system, ATPase component K25182 ybhF; drug efflux transport system ATP-binding protein D Thethe_00284 RND family efflux transporter, MFP subunit K25183 ybhG; membrane fusion protein YbhG D Thethe_02507 ABC-2 type transporter K25147 berB; beta-exotoxin I transport system permease protein D Thethe_02508 hypothetical protein K25147 berB; beta-exotoxin I transport system permease protein D Thethe_02509 ABC-type multidrug transport system, ATPase component K25148 berA; beta-exotoxin I transport system ATP-binding protein D Thethe_00618 cell division protein K09811 ftsX; cell division transport system permease protein D Thethe_00617 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D Thethe_01117 ABC-type polysaccharide/polyol phosphate export systems, permease component K01992 ABC-2.P; ABC-2 type transport system permease protein D Thethe_02366 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D Thethe_00130 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D Thethe_00290 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D Thethe_00129 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Thethe_00291 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Thethe_01118 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Thethe_02359 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Thethe_02364 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Thethe_00898 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Thethe_00960 putative permease K02004 ABC.CD.P; putative ABC transport system permease protein D Thethe_00466 ABC-type transport system, involved in lipoprotein release, permease component K02004 ABC.CD.P; putative ABC transport system permease protein D Thethe_01448 ABC-type transport system, involved in lipoprotein release, permease component K02004 ABC.CD.P; putative ABC transport system permease protein D Thethe_02598 ABC-type transport system, involved in lipoprotein release, permease component K02004 ABC.CD.P; putative ABC transport system permease protein D Thethe_02369 hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein D Thethe_02599 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Thethe_00959 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Thethe_00465 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Thethe_01447 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Thethe_02368 putative bacteriocin export ABC transporter, lactococcin 972 group K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Thethe_02679 FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein D Thethe_02444 putative efflux protein, MATE family K26939 norM; MATE family, multidrug efflux pump D Thethe_02499 putative efflux protein, MATE family K26939 norM; MATE family, multidrug efflux pump D Thethe_00098 Major Facilitator Superfamily transporter K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein D Thethe_00166 Major Facilitator Superfamily transporter K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein D Thethe_01107 arabinose efflux permease family protein K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein D Thethe_00342 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D Thethe_00744 phosphotransferase system HPr (HPr) family protein K02784 ptsH; phosphocarrier protein HPr D Thethe_00104 HPr-related phosphotransferase system component K02784 ptsH; phosphocarrier protein HPr D Thethe_02400 PTS system, glucose subfamily, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D Thethe_02310 PTS system IIA component, Glc family K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D Thethe_02311 PTS system N-acetylglucosamine-specific IICB component, Glc family K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D Thethe_02399 glucose/maltose/N-acetylglucosamine-specific phosphotransferase system IIC component K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D Thethe_00634 PTS system beta-glucoside-specific IIBCA component, Glc family K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-] D Thethe_01704 PTS system IIA component, Fru family K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202] D Thethe_00904 PTS system unknown substrate IIC component, Fru family K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D Thethe_02605 PTS system D-fructose-specific IICB component (F1P-forming), Frc family K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D Thethe_00903 PTS system IIB component, Fru family K02769 fruAb; fructose PTS system EIIB component [EC:2.7.1.202] D Thethe_01703 PTS system IICB component, Fru family K11203 fryC; fructose-like PTS system EIIC or EIIBC or EIIABC component D Thethe_02171 phosphotransferase system cellobiose-specific component IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D Thethe_02407 phosphotransferase system cellobiose-specific component IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D Thethe_02484 phosphotransferase system cellobiose-specific component IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D Thethe_00647 phosphotransferase system cellobiose-specific component IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D Thethe_02478 phosphotransferase system cellobiose-specific component IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D Thethe_02173 phosphotransferase system cellobiose-specific component IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D Thethe_02408 phosphotransferase system cellobiose-specific component IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D Thethe_02483 phosphotransferase system cellobiose-specific component IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D Thethe_00649 phosphotransferase system cellobiose-specific component IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D Thethe_02477 phosphotransferase system cellobiose-specific component IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D Thethe_02172 PTS system, lactose/cellobiose family IIC component K02761 celB; cellobiose PTS system EIIC component D Thethe_00650 phosphotransferase system, cellobiose specific, IIC component K02761 celB; cellobiose PTS system EIIC component D Thethe_02476 PTS system, lactose/cellobiose family IIC component K02761 celB; cellobiose PTS system EIIC component D Thethe_02481 PTS system, lactose/cellobiose family IIC component K02761 celB; cellobiose PTS system EIIC component D Thethe_01921 phosphotransferase system mannitol/fructose-specifc IIA component (Ntr-type) K02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200] D Thethe_01920 phosphotransferase system, galactitol-specific IIB component K02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200] D Thethe_01919 phosphotransferase system, galactitol-specific IIC component K02775 gatC; galactitol PTS system EIIC component D Thethe_01742 phosphotransferase system, mannose/fructose-specific component IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D Thethe_01740 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC K02795 manY; mannose PTS system EIIC component D Thethe_01739 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID K02796 manZ; mannose PTS system EIID component D Thethe_01741 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB K02813 sorB; sorbose PTS system EIIB component [EC:2.7.1.206] D Thethe_02003 phosphotransferase system, mannose/fructose-specific component IIA K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-] D Thethe_02006 PTS system, mannose/fructose/sorbose family, IIB component K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-] D Thethe_02005 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC K02746 agaW; N-acetylgalactosamine PTS system EIIC component D Thethe_02004 PTS system, mannose/fructose/sorbose family, IID component K02747 agaE; N-acetylgalactosamine PTS system EIID component D Thethe_02528 phosphotransferase system, galactitol-specific IIB component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D Thethe_02527 hypothetical protein K03475 ulaA; ascorbate PTS system EIIC component D Thethe_02606 PTS system D-fructose-specific IIA component (F1P-forming), Frc family K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D Thethe_00590 dihydroxyacetone kinase DhaM subunit K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121] D Thethe_02134 MIP family channel protein K02440 glpF; glycerol uptake facilitator D Thethe_00582 MIP family channel protein K02440 glpF; glycerol uptake facilitator D Thethe_01832 ammonium transporter K03320 amt; ammonium transporter, Amt family D Thethe_00305 Mg-chelatase subunit ChlD K07114 yfbK; Ca-activated chloride channel homolog D Thethe_02757 small-conductance mechanosensitive channel K22044 ybiO; moderate conductance mechanosensitive channel D Thethe_02745 Mg/Co/Ni transporter MgtE with CBS domain K06213 mgtE; magnesium transporter D Thethe_02228 flagellar motor component K02556 motA; chemotaxis protein MotA D Thethe_02227 flagellar motor protein K02557 motB; chemotaxis protein MotB D Thethe_00047 crcB protein K06199 crcB; fluoride exporter D Thethe_00048 crcB protein K06199 crcB; fluoride exporter D Thethe_02622 putative S-layer protein K21449 ata; trimeric autotransporter adhesin D Thethe_02129 carbon dioxide concentrating mechanism/carboxysome shell protein K27260 pduA; bacterial microcompartment shell protein D Thethe_02121 carbon dioxide concentrating mechanism/carboxysome shell protein K27260 pduA; bacterial microcompartment shell protein D Thethe_02412 amino acid transporter K20265 gadC; glutamate:GABA antiporter D Thethe_00567 spore germination protein, amino acid permease K06296 gerKB; spore germination protein KB D Thethe_00321 spore germination protein, amino acid permease K06296 gerKB; spore germination protein KB D Thethe_01892 spore germination protein, amino acid permease K06296 gerKB; spore germination protein KB D Thethe_00194 spore germination protein, amino acid permease K06311 yndE; spore germination protein D Thethe_02585 putative divalent heavy-metal cations transporter K07238 TC.ZIP; zinc transporter, ZIP family D Thethe_01925 putative membrane protein K08978 TC.BAT1; bacterial/archaeal transporter family protein D Thethe_01673 L-lactate transport K03303 lutP; lactate permease D Thethe_02470 Ca2+/Na+ antiporter K07301 yrbG; cation:H+ antiporter D Thethe_01953 K+ transport system, NAD-binding component K03499 trkA; trk/ktr system potassium uptake protein D Thethe_01954 K+ transport system, NAD-binding component K03499 trkA; trk/ktr system potassium uptake protein D Thethe_00280 uracil-xanthine permease K02824 uraA; uracil permease D Thethe_02193 permease K06901 pbuG; adenine/guanine/hypoxanthine permease D Thethe_02650 chloride channel protein EriC K03281 clcA; chloride channel protein, CIC family D Thethe_02225 Mn2+/Fe2-transporter, NRAMP family K03322 mntH; manganese transport protein D Thethe_00249 natural resistance-associated macrophage protein metal ion transporter NRAMP K03322 mntH; manganese transport protein D Thethe_00568 Na+/phosphate symporter K03324 yjbB; phosphate:Na+ symporter D Thethe_02180 stage V sporulation protein B K06409 spoVB; stage V sporulation protein B D Thethe_01981 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D Thethe_02555 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D Thethe_02327 putative permease K24180 mleP; malate permease and related proteins D Thethe_01050 putative permease K24180 mleP; malate permease and related proteins D Thethe_02419 putative branched-chain amino acid permease (azaleucine resistance) K26605 azlC; branched chain amino acid efflux pump D Thethe_02418 putative membrane protein K26606 azlD; branched chain amino acid efflux pump D Thethe_02235 putative membrane protein K23675 fmnP; riboflavin transporter D Thethe_00219 putative proton-coupled thiamine transporter YuaJ K16789 thiT; thiamine transporter D Thethe_02330 putative membrane protein K22736 VIT; vacuolar iron transporter family protein D Thethe_01777 cell division protein FtsW K03588 ftsW; cell division protein FtsW D Thethe_01625 putative membrane protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D Thethe_01952 vacuolar-type H(+)-translocating pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1] D Thethe_01317 pyruvate/oxaloacetate carboxyltransferase K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D Thethe_00316 acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01604 mmdA; methylmalonyl-CoA decarboxylase subunit alpha [EC:7.2.4.3] D Thethe_00318 acetyl/propionyl-CoA carboxylase, alpha subunit K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma D Thethe_00717 cytochrome c biogenesis protein K06196 ccdA; cytochrome c-type biogenesis protein D Thethe_01620 cytochrome c biogenesis protein K06196 ccdA; cytochrome c-type biogenesis protein D Thethe_00971 capsular exopolysaccharide biosynthesis protein K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3] D Thethe_00970 capsular polysaccharide biosynthesis protein K19420 epsA; protein tyrosine kinase modulator D Thethe_02383 Fe2+ transport system protein A K04758 feoA; ferrous iron transport protein A D Thethe_02382 ferrous iron transporter FeoB K04759 feoB; ferrous iron transport protein B C 02044 Secretion system [BR:tto02044] D Thethe_01246 prepilin signal peptidase PulO-like peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Thethe_01245 prepilin-type N-terminal cleavage/methylation domain-containing protein K02650 pilA; type IV pilus assembly protein PilA D Thethe_01242 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB K02652 pilB; type IV pilus assembly protein PilB D Thethe_01244 type II secretory pathway, component PulF K02653 pilC; type IV pilus assembly protein PilC D Thethe_01252 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM D Thethe_01253 Tfp pilus assembly protein PilN K02663 pilN; type IV pilus assembly protein PilN D Thethe_01254 Tfp pilus assembly protein PilO K02664 pilO; type IV pilus assembly protein PilO D Thethe_01243 pilus retraction protein PilT K02669 pilT; twitching motility protein PilT D Thethe_01250 hypothetical protein K02673 pilX; type IV pilus assembly protein PilX D Thethe_02803 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D Thethe_02820 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D Thethe_02800 Flp pilus assembly protein, ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Thethe_02817 Flp pilus assembly protein, ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Thethe_02801 Flp pilus assembly protein TadB K12510 tadB; tight adherence protein B D Thethe_02815 hypothetical protein K12511 tadC; tight adherence protein C D Thethe_01170 YGGT family protein K02221 yggT; YggT family protein D Thethe_01094 competence protein ComEA-like protein with helix-hairpin-helix repeat region K02237 comEA; competence protein ComEA D Thethe_02580 deoxycytidylate deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12] D Thethe_01123 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC D Thethe_02020 putative hydrolase (metallo-beta-lactamase superfamily) K02238 comEC; competence protein ComEC D Thethe_01251 Late competence development protein ComFB K02241 comFB; competence protein ComFB D Thethe_01401 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Thethe_01402 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Thethe_01420 flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF K02409 fliF; flagellar M-ring protein FliF D Thethe_01418 flagellar biosynthesis/type III secretory pathway protein K02411 fliH; flagellar assembly protein FliH D Thethe_01417 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Thethe_01408 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Thethe_01406 Flagellar biosynthesis protein, FliO K02418 fliO; flagellar protein FliO/FliZ D Thethe_01405 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Thethe_01404 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D Thethe_01403 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Thethe_02243 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Thethe_01525 protein-export membrane protein, SecD/SecF family K03072 secD; preprotein translocase subunit SecD D Thethe_00368 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Thethe_01524 protein-export membrane protein, SecD/SecF family K03074 secF; preprotein translocase subunit SecF D Thethe_02037 protein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Thethe_00403 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Thethe_01439 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Thethe_01452 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Thethe_01530 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Thethe_02774 preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase C 02042 Bacterial toxins [BR:tto02042] D Thethe_01898 N-acetyl-beta-hexosaminidase K01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35] C 02022 Two-component system [BR:tto02022] D Thethe_01763 PAS domain S-box K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Thethe_01764 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D Thethe_02620 signal transduction histidine kinase K07650 cssS; two-component system, OmpR family, sensor histidine kinase CssS [EC:2.7.13.3] D Thethe_02621 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K07770 cssR; two-component system, OmpR family, response regulator CssR D Thethe_01968 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K07775 resD; two-component system, OmpR family, response regulator ResD D Thethe_02716 signal transduction histidine kinase K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3] D Thethe_02717 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K07668 vicR; two-component system, OmpR family, response regulator VicR D Thethe_01628 signal transduction histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3] D Thethe_01629 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K18941 arlR; two-component system, OmpR family, response regulator ArlR D Thethe_01870 histidine kinase,HAMP domain-containing protein,histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3] D Thethe_01871 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR D Thethe_01805 histidine kinase K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3] D Thethe_01804 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07692 degU; two-component system, NarL family, response regulator DegU D Thethe_00312 signal transduction histidine kinase, nitrogen specific K02491 kinA; two-component system, sporulation sensor kinase A [EC:2.7.13.3] D Thethe_00721 signal transduction histidine kinase, nitrogen specific K13533 kinE; two-component system, sporulation sensor kinase E [EC:2.7.13.3] D Thethe_02594 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F D Thethe_01285 sporulation transcription factor Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A D Thethe_01878 putative regulator of cell autolysis K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D Thethe_01877 response regulator of the LytR/AlgR family K02477 K02477; two-component system, LytTR family, response regulator D Thethe_02224 response regulator of the LytR/AlgR family K02477 K02477; two-component system, LytTR family, response regulator D Thethe_00722 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K07714 atoC; two-component system, NtrC family, response regulator AtoC D Thethe_01397 chemotaxis protein histidine kinase-like protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Thethe_01407 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Thethe_00946 putative signal transduction protein with a C-terminal ATPase domain K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3] D Thethe_02429 response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K07720 yesN; two-component system, response regulator YesN D Thethe_02132 response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K07720 yesN; two-component system, response regulator YesN D Thethe_00945 response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K07720 yesN; two-component system, response regulator YesN D Thethe_01016 response regulator with putative antiterminator output domain K22010 pdtaR; two-component system, response regulator PdtaR C 02035 Bacterial motility proteins [BR:tto02035] D Thethe_01397 chemotaxis protein histidine kinase-like protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Thethe_01396 chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW D Thethe_01539 chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW D Thethe_01395 chemotaxis protein CheC, inhibitor of MCP methylation K03410 cheC; chemotaxis protein CheC D Thethe_01394 chemotaxis protein K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D Thethe_01330 methylase of chemotaxis methyl-accepting protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Thethe_01407 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Thethe_02313 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D Thethe_02551 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D Thethe_02740 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D Thethe_01418 flagellar biosynthesis/type III secretory pathway protein K02411 fliH; flagellar assembly protein FliH D Thethe_01417 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Thethe_01416 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D Thethe_01406 Flagellar biosynthesis protein, FliO K02418 fliO; flagellar protein FliO/FliZ D Thethe_01405 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Thethe_01404 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D Thethe_01403 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Thethe_01401 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Thethe_01402 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Thethe_01419 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Thethe_01409 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D Thethe_01408 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Thethe_01420 flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF K02409 fliF; flagellar M-ring protein FliF D Thethe_01410 flagellar basal body-associated protein K02415 fliL; flagellar protein FliL D Thethe_01421 flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D Thethe_01414 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK D Thethe_01423 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D Thethe_01422 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D Thethe_01413 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD D Thethe_02561 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D Thethe_02560 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D Thethe_02559 Rod binding protein K02395 flgJ; peptidoglycan hydrolase FlgJ D Thethe_01412 flagellar basal-body rod protein FlgF K02390 flgE; flagellar hook protein FlgE D Thethe_02269 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D Thethe_02268 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D Thethe_02264 flagellin/flagellar hook associated protein K02406 fliC; flagellin D Thethe_02256 flagellar capping protein K02407 fliD; flagellar hook-associated protein 2 D Thethe_02255 flagellar biosynthetic protein FliS K02422 fliS; flagellar secretion chaperone FliS D Thethe_01393 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA D Thethe_02228 flagellar motor component K02556 motA; chemotaxis protein MotA D Thethe_02227 flagellar motor protein K02557 motB; chemotaxis protein MotB D Thethe_02266 hypothetical protein K13626 fliW; flagellar assembly factor FliW D Thethe_02271 flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D Thethe_02257 flagellar protein FlaG K06603 flaG; flagellar protein FlaG D Thethe_01411 uncharacterized protein, possibly involved in motility K02385 flbD; flagellar protein FlbD D Thethe_01400 flagellar GTP-binding protein K02404 flhF; flagellar biosynthesis protein FlhF D Thethe_01399 ATPase involved in chromosome partitioning K04562 flhG; flagellar biosynthesis protein FlhG D Thethe_01243 pilus retraction protein PilT K02669 pilT; twitching motility protein PilT D Thethe_01245 prepilin-type N-terminal cleavage/methylation domain-containing protein K02650 pilA; type IV pilus assembly protein PilA D Thethe_01242 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB K02652 pilB; type IV pilus assembly protein PilB D Thethe_01244 type II secretory pathway, component PulF K02653 pilC; type IV pilus assembly protein PilC D Thethe_01246 prepilin signal peptidase PulO-like peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Thethe_01254 Tfp pilus assembly protein PilO K02664 pilO; type IV pilus assembly protein PilO D Thethe_01253 Tfp pilus assembly protein PilN K02663 pilN; type IV pilus assembly protein PilN D Thethe_01252 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM D Thethe_01250 hypothetical protein K02673 pilX; type IV pilus assembly protein PilX D Thethe_02803 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D Thethe_02820 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D Thethe_02800 Flp pilus assembly protein, ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Thethe_02817 Flp pilus assembly protein, ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:tto04812] D Thethe_01610 uncharacterized protein, PH0010 family K06990 MEMO1; MEMO1 family protein D Thethe_02562 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Thethe_01068 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Thethe_02840 metal-dependent protease with possible chaperone activity K18640 parM; plasmid segregation protein ParM D Thethe_01770 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Thethe_01771 cell division protein FtsA K03590 ftsA; cell division protein FtsA D Thethe_01072 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D Thethe_01073 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D Thethe_01074 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D Thethe_02767 ATPase involved in chromosome partitioning K03496 parA; chromosome partitioning protein D Thethe_02766 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Thethe_02768 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:tto04147] D Thethe_02039 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Thethe_02043 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Thethe_02042 3-phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Thethe_00749 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Thethe_00565 Zn-dependent dipeptidase, microsomal dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D Thethe_02196 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Thethe_01137 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Thethe_00592 molecular chaperone K04043 dnaK; molecular chaperone DnaK D Thethe_00781 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Thethe_02195 inosine-5''-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D Thethe_00381 translation elongation factor TU K02358 tuf; elongation factor Tu D Thethe_00366 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu D Thethe_01142 HIT family hydrolase, diadenosine tetraphosphate hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Thethe_02460 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D Thethe_00639 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Thethe_00962 uncharacterized protein, 4-oxalocrotonate tautomerase K07253 MIF; phenylpyruvate tautomerase [EC:5.3.2.1] D Thethe_01663 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Thethe_00404 adenylate kinase family protein K00939 adk; adenylate kinase [EC:2.7.4.3] D Thethe_01520 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D Thethe_00244 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Thethe_00243 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Thethe_00671 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D Thethe_01015 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Thethe_01165 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Thethe_01591 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D Thethe_02634 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Thethe_02137 phosphoglycerate dehydrogenase-like oxidoreductase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Thethe_02187 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Thethe_01963 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Thethe_01641 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Thethe_02041 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 02048 Prokaryotic defense system [BR:tto02048] D Thethe_02656 CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D Thethe_02655 CRISPR-associated endoribonuclease Cas2 K09951 cas2; CRISPR-associated protein Cas2 D Thethe_02660 putative helicase K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D Thethe_00571 CRISPR-associated exonuclease, Cas4 family K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D Thethe_02657 CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D Thethe_02664 CRISPR-associated endoribonuclease Cas6 K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-] D Thethe_02903 hypothetical protein K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-] D Thethe_02663 CRISPR-associated protein, TM1802 family K19114 csh1; CRISPR-associated protein Csh1 D Thethe_02662 CRISPR-associated protein Cas7/Csh2, subtype I-B/HMARI K19115 csh2; CRISPR-associated protein Csh2 D Thethe_02661 CRISPR-associated protein Cas5, subtype I-B/HMARI K19116 cas5h; CRISPR-associated protein Cas5h D Thethe_02666 putative RAMP superfamily protein probably involved in DNA repair K09002 csm3; CRISPR-associated protein Csm3 D Thethe_02667 putative RAMP superfamily protein probably involved in DNA repair K09002 csm3; CRISPR-associated protein Csm3 D Thethe_02671 putative RAMP superfamily protein probably involved in DNA repair K09002 csm3; CRISPR-associated protein Csm3 D Thethe_00883 CRISPR-associated protein, Cmr1 family K07061 cmr1; CRISPR-associated protein Cmr1 D Thethe_00884 CRISPR-associated protein, Cmr2 family K19076 cmr2; CRISPR-associated protein Cmr2 D Thethe_00885 CRISPR-associated protein, Cmr3 family K09127 cmr3; CRISPR-associated protein Cmr3 D Thethe_00880 CRISPR-associated protein, Cmr4 family K09000 cmr4; CRISPR-associated protein Cmr4 D Thethe_00881 CRISPR-associated protein, Cmr5 family K19141 cmr5; CRISPR-associated protein Cmr5 D Thethe_00882 CRISPR type III-B/RAMP module RAMP protein Cmr6 K19142 cmr6; CRISPR-associated protein Cmr6 D Thethe_02836 restriction endonuclease K07448 mrr; restriction system protein D Thethe_00530 growth inhibitor K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D Thethe_00529 putative transcriptional regulator with CopG/Arc/MetJ DNA-binding domain and metal-binding domain K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI D Thethe_00763 looped-hinge helix DNA binding domain, AbrB family K19156 prlF; antitoxin PrlF D Thethe_01859 cytotoxic translational repressor of toxin-antitoxin stability system K06218 relE; mRNA interferase RelE/StbE D Thethe_02496 toxin-antitoxin system, toxin component, Txe/YoeB family K19158 yoeB; toxin YoeB [EC:3.1.-.-] D Thethe_02495 prevent-host-death family protein K19159 yefM; antitoxin YefM D Thethe_01866 hypothetical protein K18843 hicB; antitoxin HicB D Thethe_01038 putative stress-responsive transcriptional regulator K03973 pspC; phage shock protein C D Thethe_00759 addiction module toxin, RelE/StbE family K19092 parE1_3_4; toxin ParE1/3/4 D Thethe_01770 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Thethe_02562 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Thethe_01068 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Thethe_01098 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Thethe_01213 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Thethe_01791 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels [BR:tto04040] C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes [BR:tto01504] D Thethe_00098 Major Facilitator Superfamily transporter K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein D Thethe_00166 Major Facilitator Superfamily transporter K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein D Thethe_01107 arabinose efflux permease family protein K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein D Thethe_00518 beta-lactamase class A K17836 penP; beta-lactamase class A [EC:3.5.2.6] D Thethe_02505 beta-lactamase class A K17836 penP; beta-lactamase class A [EC:3.5.2.6] C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins [BR:tto00536] D Thethe_01898 N-acetyl-beta-hexosaminidase K01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35] C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:tto00537] D Thethe_00565 Zn-dependent dipeptidase, microsomal dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D Thethe_01898 N-acetyl-beta-hexosaminidase K01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:tto03100] D Thethe_01807 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Thethe_02923 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Thethe_02022 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Thethe_01164 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Thethe_00606 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Thethe_00035 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Thethe_00036 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Thethe_02152 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Thethe_00055 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Thethe_00423 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Thethe_02033 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Thethe_00426 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Thethe_01993 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Thethe_01990 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Thethe_02150 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Thethe_01105 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Thethe_00303 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Thethe_00424 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Thethe_01104 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Thethe_00056 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Thethe_02153 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Thethe_01991 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Thethe_02147 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Thethe_02151 tRNA-His K14226 tRNA-His; tRNA His D Thethe_01806 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Thethe_00421 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Thethe_02098 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Thethe_00266 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Thethe_01049 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Thethe_01550 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Thethe_02148 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Thethe_00469 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Thethe_02149 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Thethe_02146 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Thethe_00268 tRNA-Met K14230 tRNA-Met; tRNA Met D Thethe_00425 tRNA-Met K14230 tRNA-Met; tRNA Met D Thethe_02032 tRNA-Met K14230 tRNA-Met; tRNA Met D Thethe_00267 tRNA-Met K14230 tRNA-Met; tRNA Met D Thethe_00427 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Thethe_01992 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Thethe_01000 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Thethe_01747 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Thethe_02282 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Thethe_00039 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Thethe_00028 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Thethe_00029 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Thethe_00038 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Thethe_00365 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Thethe_00463 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Thethe_02735 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Thethe_01199 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Thethe_02280 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Thethe_00468 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Thethe_01994 tRNA-Val K14237 tRNA-Val; tRNA Val D Thethe_02281 tRNA-Val K14237 tRNA-Val; tRNA Val D Thethe_02024 tRNA-Val K14237 tRNA-Val; tRNA Val D Thethe_02025 tRNA-Val K14237 tRNA-Val; tRNA Val D Thethe_00420 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Thethe_00545 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Thethe_01506 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Thethe_00070 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Thethe_00053 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Thethe_00422 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Thethe_00071 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Thethe_00546 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Thethe_01505 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Thethe_00054 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Thethe_00072 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Thethe_01504 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Thethe_00547 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Thethe_00040 Bacterial signal recognition particle RNA K01983 ffs; SRP RNA D Thethe_02029 Bacterial RNase P class A K01978 rnpB; M1 RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D Thethe_02689 putative oxidoreductase, aryl-alcohol dehydrogenase like protein K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-] D Thethe_02548 Fe-dependent oxidoreductase, alcohol dehydrogenase K19955 adh2; alcohol dehydrogenase [EC:1.1.1.-] D Thethe_00816 putative oxidoreductase, aryl-alcohol dehydrogenase like protein K23107 yajO; 1-deoxyxylulose-5-phosphate synthase [EC:1.1.-.-] D Thethe_00327 putative dehydrogenase K14330 K14330; fatty aldehyde-generating acyl-ACP reductase [EC:1.2.1.80] D Thethe_00276 glycerol-3-phosphate dehydrogenase K04940 odh; opine dehydrogenase [EC:1.5.1.28] D Thethe_00986 putative flavoprotein K22405 fprA1_2; NADH oxidase (H2O-forming) [EC:1.6.3.4] D Thethe_02014 NADH:flavin oxidoreductase K00354 E1.6.99.1; NADPH2 dehydrogenase [EC:1.6.99.1] D Thethe_01096 methionine-S-sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D Thethe_01184 Peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D Thethe_01062 ferredoxin K17992 hndB; NADP-reducing hydrogenase subunit HndB [EC:1.12.1.3] D Thethe_01060 NADH:ubiquinone oxidoreductase 24 kD subunit K18330 hndA; NADP-reducing hydrogenase subunit HndA [EC:1.12.1.3] D Thethe_01063 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit K18331 hndC; NADP-reducing hydrogenase subunit HndC [EC:1.12.1.3] D Thethe_01064 hydrogenase, Fe-only K18332 hndD; NADP-reducing hydrogenase subunit HndD [EC:1.12.1.3] D Thethe_00250 desulfoferrodoxin K05919 dfx; superoxide reductase [EC:1.15.1.2] D Thethe_01102 2-polyprenylphenol hydroxylase-like oxidoreductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D Thethe_00579 protein-tyrosine-phosphatase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D Thethe_01609 pyruvate-formate lyase-activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Thethe_01950 anaerobic ribonucleoside-triphosphate reductase activating protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Thethe_00064 pyruvate formate-lyase 1-activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Thethe_02076 pyruvate formate lyase activating protein-like uncharacterized Fe-S protein K04070 pflX; putative pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Thethe_02376 putative N6-adenine-specific DNA methylase K07444 ypsC; putative N6-adenine-specific DNA methylase [EC:2.1.1.-] D Thethe_00125 sortase-like acyltransferase K24217 mnaT; L-amino acid N-acyltransferase [EC:2.3.1.-] D Thethe_01944 putative glycosylase K16212 mgp; 4-O-beta-D-mannosyl-D-glucose phosphorylase [EC:2.4.1.281] D Thethe_01929 sucrose phosphorylase K21350 E2.4.1.329; sucrose 6(F)-phosphate phosphorylase [EC:2.4.1.329] D Thethe_01937 putative glycosylase K20885 K20885; beta-1,2-mannobiose phosphorylase / 1,2-beta-oligomannan phosphorylase [EC:2.4.1.339 2.4.1.340] D Thethe_01936 putative glycosylase K20885 K20885; beta-1,2-mannobiose phosphorylase / 1,2-beta-oligomannan phosphorylase [EC:2.4.1.339 2.4.1.340] D Thethe_00992 NCAIR mutase-like protein K06898 larB; pyridinium-3,5-biscarboxylic acid mononucleotide synthase [EC:2.5.1.143] D Thethe_01834 NCAIR mutase-like protein K06898 larB; pyridinium-3,5-biscarboxylic acid mononucleotide synthase [EC:2.5.1.143] D Thethe_00707 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D Thethe_02018 prolipoprotein diacylglyceryltransferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D Thethe_02117 ATP:cob(I)alamin adenosyltransferase K27270 pduO; corrinoid adenosyltransferase [EC:2.5.1.-] D Thethe_00680 membrane-associated lipoprotein involved in thiamine biosynthesis K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D Thethe_01478 DAK2 domain fusion protein YloV K07030 fakA; fatty acid kinase [EC:2.7.2.18] D Thethe_01156 hypothetical protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D Thethe_02596 Retron-type reverse transcriptase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49] D Thethe_00542 Retron-type reverse transcriptase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49] D Thethe_00975 Retron-type reverse transcriptase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49] D Thethe_01551 Retron-type reverse transcriptase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49] D Thethe_02131 Retron-type reverse transcriptase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49] D Thethe_02286 Retron-type reverse transcriptase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49] D Thethe_00462 Retron-type reverse transcriptase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49] D Thethe_00481 TIGR00159 family protein K18672 dacA; diadenylate cyclase [EC:2.7.7.85] D Thethe_01298 anti-sigma F factor K06379 spoIIAB; stage II sporulation protein AB (anti-sigma F factor) [EC:2.7.11.1] D Thethe_00636 Hpr(Ser) kinase/phosphatase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] D Thethe_00348 arginine kinase K19405 mcsB; protein arginine kinase [EC:2.7.14.1] D Thethe_01654 putative phosphatase, C-terminal domain of histone macro H2A1 like protein K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106] D Thethe_00750 acyl-CoA thioester hydrolase, YbgC/YbaW family K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Thethe_00304 stage II sporulation protein E K06382 spoIIE; stage II sporulation protein E [EC:3.1.3.16] D Thethe_00972 capsular polysaccharide biosynthesis protein K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48] D Thethe_02140 putative metal-dependent phosphoesterase, PHP family K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] D Thethe_01346 putative metal-dependent phosphoesterase, PHP family K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] D Thethe_01240 HAD phosphatase subfamily IIIA K07015 yqeG; putative phosphatase [EC:3.1.3.-] D Thethe_02750 putative signaling protein consisting of a modified GGDEF domain and a DHH domain protein K22927 gdpP; cyclic-di-AMP phosphodiesterase [EC:3.1.4.59] D Thethe_01148 putative domain HDIG-containing protein K07037 pgpH; cyclic-di-AMP phosphodiesterase PgpH [EC:3.1.4.-] D Thethe_00099 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D Thethe_00938 beta-1,4-xylanase K01181 E3.2.1.8; endo-1,4-beta-xylanase [EC:3.2.1.8] D Thethe_00659 beta-xylosidase K06113 abnA; arabinan endo-1,5-alpha-L-arabinosidase [EC:3.2.1.99] D Thethe_00939 alpha-glucuronidase K01235 aguA; alpha-glucuronidase [EC:3.2.1.139] D Thethe_02452 putative unsaturated glucuronyl hydrolase K15532 yteR; unsaturated rhamnogalacturonyl hydrolase [EC:3.2.1.172] D Thethe_00435 Protein of unknown function (DUF2961) K27494 exoMA1; D-arabinan exo alpha-(1,3)/(1,5)-arabinofuranosidase (non-reducing end) [EC:3.2.1.225] D Thethe_01493 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D Thethe_00950 putative xylanase/chitin deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D Thethe_01006 putative xylanase/chitin deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D Thethe_00679 putative xylanase/chitin deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D Thethe_00572 delta-lactam-biosynthetic de-N-acetylase K01567 pdaA; peptidoglycan-N-acetylmuramic acid deacetylase [EC:3.5.1.-] D Thethe_00477 MoxR-like ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Thethe_02583 protein-tyrosine-phosphatase K20201 ywlE; protein arginine phosphatase [EC:3.9.1.2] D Thethe_01995 spore photoproduct lyase K03716 splB; spore photoproduct lyase [EC:4.1.99.14] D Thethe_02489 myosin-crossreactive antigen K10254 ohyA; oleate hydratase [EC:4.2.1.53] D Thethe_00526 yjeF-like protein, hydroxyethylthiazole kinase-related protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D Thethe_00991 TIGR00268 family protein K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37] D Thethe_01835 TIGR00268 family protein K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37] D Thethe_01586 cystathionine beta-lyase/cystathionine gamma-synthase K26365 cangL; canavanine-gamma-lyase [EC:4.4.1.43] D Thethe_01833 TIGR00299 family protein K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12] D Thethe_01945 N-acyl-D-glucosamine 2-epimerase K16213 cbe; cellobiose epimerase [EC:5.1.3.11] D Thethe_02760 cyanophycin synthetase K03802 cphA; cyanophycin synthetase [EC:6.3.2.29 6.3.2.30] D Thethe_00784 electron transport complex, RnfABCDGE type, D subunit K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2] D Thethe_00783 electron transport complex, RnfABCDGE type, C subunit K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2] D Thethe_00788 electron transport complex, RnfABCDGE type, B subunit K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2] D Thethe_00980 sarco/endoplasmic reticulum calcium-translocating P-type ATPase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D Thethe_01116 sarco/endoplasmic reticulum calcium-translocating P-type ATPase/plasma-membrane calcium-translocating P-type ATPase/golgi membrane calcium-translocating P-type ATPase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D Thethe_02502 heavy metal-translocating P-type ATPase, Cd/Co/Hg/Pb/Zn-transporting K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] C 99981 Carbohydrate metabolism D Thethe_00334 sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A D Thethe_02124 exopolyphosphatase K27264 pduG; propanediol dehydratase-reactivating factor large subunit D Thethe_02123 hypothetical protein K27265 pduH; propanediol dehydratase-reactivating factor small subunit C 99982 Energy metabolism D Thethe_02054 ferredoxin K05337 fer; ferredoxin D Thethe_00785 electron transport complex, RnfABCDGE type, G subunit K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G D Thethe_00786 electron transport complex, RnfABCDGE type, E subunit K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E D Thethe_00787 electron transport complex, RnfABCDGE type, A subunit K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A D Thethe_02675 SUF system FeS assembly protein, NifU family K04488 iscU; nitrogen fixation protein NifU and related proteins D Thethe_01578 hypothetical protein K02596 nifX; nitrogen fixation protein NifX D Thethe_01579 putative Fe-S oxidoreductase K02585 nifB; nitrogen fixation protein NifB D Thethe_01855 putative Fe-S oxidoreductase K02585 nifB; nitrogen fixation protein NifB D Thethe_01847 nitrogenase molybdenum-iron protein, alpha and beta chains K02592 nifN; nitrogenase molybdenum-iron protein NifN D Thethe_01848 nitrogenase molybdenum-iron cofactor biosynthesis protein NifE K02587 nifE; nitrogenase molybdenum-cofactor synthesis protein NifE D Thethe_00112 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/multisubunit Na+/H+ antiporter, MnhA subunit K14086 echA; ech hydrogenase subunit A D Thethe_00113 formate hydrogenlyase subunit 4 K14087 echB; ech hydrogenase subunit B D Thethe_00114 Ni,Fe-hydrogenase III small subunit K14088 echC; ech hydrogenase subunit C D Thethe_00115 NADH:ubiquinone oxidoreductase 27 kD subunit K14089 echD; ech hydrogenase subunit D D Thethe_00116 Ni,Fe-hydrogenase III large subunit K14090 echE; ech hydrogenase subunit E D Thethe_00117 hypothetical protein K14091 echF; ech hydrogenase subunit F C 99983 Lipid metabolism D Thethe_01476 EDD domain protein, DegV family K25232 fakB; fatty acid kinase fatty acid binding subunit C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D Thethe_01168 pyridoxal phosphate enzyme, YggS family K06997 yggS; PLP dependent protein C 99986 Glycan metabolism D Thethe_00573 hypothetical protein K07027 K07027; glycosyltransferase 2 family protein D Thethe_00124 Cell Wall Hydrolase K01449 cwlJ; cell wall hydrolase C 99987 Cofactor metabolism D Thethe_01522 2-octaprenylphenol hydroxylase K03688 ubiB; ubiquinone biosynthesis protein C 99988 Secondary metabolism C 99999 Others B B 09192 Unclassified: genetic information processing C 99973 Transcription D Thethe_02008 cold shock protein K03704 cspA; cold shock protein D Thethe_01850 nitrogen regulatory protein PII K02589 nifHD1; nitrogen regulatory protein PII 1 D Thethe_01849 nitrogen regulatory protein PII K02590 nifHD2; nitrogen regulatory protein PII 2 D Thethe_02241 transcriptional accessory protein K06959 tex; protein Tex D Thethe_01498 hypothetical protein K09777 remA; extracellular matrix regulatory protein A D Thethe_00005 hypothetical protein K24648 remB; extracellular matrix regulatory protein B C 99974 Translation D Thethe_00264 putative RNA-binding protein with ribosomal protein S1 domain K07571 K07571; S1 RNA binding domain protein D Thethe_02534 putative exonuclease of the beta-lactamase fold involved in RNA processing K07576 K07576; metallo-beta-lactamase family protein C 99975 Protein processing D Thethe_00347 uncharacterized protein with conserved CXXC pairs K19411 mcsA; protein arginine kinase activator D Thethe_00827 trigger factor K03545 tig; trigger factor D Thethe_01163 SsrA-binding protein K03664 smpB; SsrA-binding protein D Thethe_00121 hydrogenase assembly chaperone HypC/HupF K04653 hypC; hydrogenase expression/formation protein HypC D Thethe_00122 hydrogenase expression/formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD D Thethe_00123 hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE D Thethe_01516 hydrogenase maturation factor K04655 hypE; hydrogenase expression/formation protein HypE D Thethe_00120 (NiFe) hydrogenase maturation protein HypF K04656 hypF; hydrogenase maturation protein HypF D Thethe_01432 Mg chelatase-related protein K07391 comM; magnesium chelatase family protein C 99976 Replication and repair D Thethe_01067 DNA replication and repair protein RadC K03630 radC; DNA repair protein RadC D Thethe_00497 hypothetical protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family D Thethe_01430 TIGR00252 family protein K07460 yraN; putative endonuclease D Thethe_01428 DNA protecting protein DprA K04096 smf; DNA processing protein D Thethe_01211 AAA ATPase K07478 ycaJ; putative ATPase D Thethe_00856 transposase K07483 K07483; transposase D Thethe_02888 transposase K07486 K07486; transposase D Thethe_00149 transposase K07491 rayT; REP-associated tyrosine transposase D Thethe_00755 transposase K07493 K07493; putative transposase D Thethe_00448 integrase family protein K07497 K07497; putative transposase C 99979 Viral proteins C 99998 Others D Thethe_00711 phage shock protein A (IM30), suppresses sigma54-dependent transcription K03969 pspA; phage shock protein A D Thethe_00043 DNA-binding protein, YbaB/EbfC family K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D Thethe_01039 gamma-aminobutyrate permease-like transporter K03293 TC.AAT; amino acid transporter, AAT family D Thethe_02375 amino acid transporter K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D Thethe_00690 amino acid transporter K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D Thethe_02415 phosphate/sulfate permease K03306 TC.PIT; inorganic phosphate transporter, PiT family C 99978 Cell growth D Thethe_00051 pro-sigmaK processing inhibitor BofA K06317 bofA; inhibitor of the pro-sigma K processing machinery D Thethe_01652 pro-sigmaK processing inhibitor BofA K06317 bofA; inhibitor of the pro-sigma K processing machinery D Thethe_00794 hypothetical protein K06333 cotJB; spore coat protein JB D Thethe_00793 Mn-containing catalase K06334 cotJC; spore coat protein JC D Thethe_02773 putative RNA-binding protein K06346 jag; spoIIIJ-associated protein D Thethe_00091 putative membrane protein required for spore maturation K06373 spmA; spore maturation protein A D Thethe_00092 putative membrane protein K06374 spmB; spore maturation protein B D Thethe_01297 anti-anti-sigma factor K06378 spoIIAA; stage II sporulation protein AA (anti-sigma F factor antagonist) D Thethe_01294 stage II sporulation protein M K06384 spoIIM; stage II sporulation protein M D Thethe_01756 stage II sporulation protein P K06385 spoIIP; stage II sporulation protein P D Thethe_01128 stage II sporulation protein P K06385 spoIIP; stage II sporulation protein P D Thethe_00196 stage II sporulation protein R K06387 spoIIR; stage II sporulation protein R D Thethe_01262 stage III sporulation protein AA K06390 spoIIIAA; stage III sporulation protein AA D Thethe_01263 stage III sporulation protein AB K06391 spoIIIAB; stage III sporulation protein AB D Thethe_01264 stage III sporulation protein AC K06392 spoIIIAC; stage III sporulation protein AC D Thethe_02835 Stage III sporulation protein AC/AD protein family K06392 spoIIIAC; stage III sporulation protein AC D Thethe_01265 stage III sporulation protein AD K06393 spoIIIAD; stage III sporulation protein AD D Thethe_01266 stage III sporulation protein AE K06394 spoIIIAE; stage III sporulation protein AE D Thethe_01267 stage III sporulation protein AF K06395 spoIIIAF; stage III sporulation protein AF D Thethe_01268 stage III sporulation protein AG K06396 spoIIIAG; stage III sporulation protein AG D Thethe_01269 hypothetical protein K06397 spoIIIAH; stage III sporulation protein AH D Thethe_01748 stage IV sporulation protein A K06398 spoIVA; stage IV sporulation protein A D Thethe_01301 stage V sporulation protein AC K06405 spoVAC; stage V sporulation protein AC D Thethe_01302 stage V sporulation protein AD K06406 spoVAD; stage V sporulation protein AD D Thethe_01303 stage V sporulation protein AE K06407 spoVAE; stage V sporulation protein AE D Thethe_00175 uncharacterized protein, involved in the regulation of septum location K06412 spoVG; stage V sporulation protein G D Thethe_01342 stage V sporulation protein K K06413 spoVK; stage V sporulation protein K D Thethe_01347 hypothetical protein K06416 spoVS; stage V sporulation protein S D Thethe_01454 hypothetical protein K06416 spoVS; stage V sporulation protein S D Thethe_01003 small, acid-soluble spore protein, alpha/beta type K06418 SASP-A; small acid-soluble spore protein A (major alpha-type SASP) D Thethe_01474 small, acid-soluble spore protein, alpha/beta type K06418 SASP-A; small acid-soluble spore protein A (major alpha-type SASP) D Thethe_01475 small, acid-soluble spore protein, alpha/beta type K06418 SASP-A; small acid-soluble spore protein A (major alpha-type SASP) D Thethe_00200 small, acid-soluble spore protein, alpha/beta type K06423 sspF; small acid-soluble spore protein F (minor alpha/beta-type SASP) D Thethe_02682 small acid-soluble spore protein, H-type K06425 sspH; small acid-soluble spore protein H (minor) D Thethe_01651 small, acid-soluble spore protein I K06426 sspI; small acid-soluble spore protein I (minor) D Thethe_02417 small, acid-soluble spore protein tlp K06434 tlp; small acid-soluble spore protein (thioredoxin-like protein) D Thethe_00186 sporulation peptidase YabG K06436 yabG; spore coat assemly protein D Thethe_01146 sporulation protein YqfD K06438 yqfD; similar to stage IV sporulation protein D Thethe_00322 spore germination protein, GerA family K06295 gerKA; spore germination protein KA D Thethe_00323 germination protein, Ger(X)C family K06297 gerKC; spore germination protein KC D Thethe_00195 germination protein, Ger(X)C family K06297 gerKC; spore germination protein KC D Thethe_00193 spore germination protein, GerA family K06310 yndD; spore germination protein D Thethe_00199 germination protein YpeB K06313 ypeB; spore germination protein C 99993 Cell motility C 99995 Signaling proteins D Thethe_01876 carbon starvation protein, predicted membrane protein K06200 cstA; carbon starvation protein D Thethe_01052 GTP-binding protein TypA/BipA K06207 typA; GTP-binding protein D Thethe_00295 ACT domain-containing protein K07166 K07166; ACT domain-containing protein D Thethe_01147 phosphate starvation-inducible protein PhoH, predicted ATPase K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins C 99992 Structural proteins D Thethe_01077 membrane-bound metallopeptidase K06194 nlpD; lipoprotein NlpD D Thethe_02600 membrane-fusion protein K02005 ABC.CD.TX; HlyD family secretion protein D Thethe_00464 membrane-fusion protein K02005 ABC.CD.TX; HlyD family secretion protein D Thethe_02128 ethanolamine utilization protein K27263 pduB; bacterial microcompartment shell protein D Thethe_02122 carbon dioxide concentrating mechanism/carboxysome shell protein K27267 pduK; bacterial microcompartment shell protein C 99994 Others D Thethe_01758 phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein D Thethe_02244 hemerythrin-like metal-binding domain-containing protein K07216 hr; hemerythrin D Thethe_00520 hemerythrin-like metal-binding domain-containing protein K07216 hr; hemerythrin B B 09194 Poorly characterized C 99996 General function prediction only D Thethe_02758 Colicin V production protein K03558 cvpA; membrane protein required for colicin V production D Thethe_01166 putative dehydrogenase K03810 mviM; virulence factor D Thethe_00729 PHP family phosphohydrolase, histidinol phosphatase K04477 ycdX; putative hydrolase D Thethe_00637 PHP family phosphohydrolase, histidinol phosphatase K04477 ycdX; putative hydrolase D Thethe_02105 putative esterase of the alpha-beta hydrolase superfamily K07001 K07001; NTE family protein D Thethe_02678 FeS assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB D Thethe_02677 Iron-regulated ABC transporter permease protein SufD K09015 sufD; Fe-S cluster assembly protein SufD D Thethe_02824 putative membrane-bound metal-dependent hydrolase (DUF457) K07038 K07038; inner membrane protein D Thethe_01694 putative metal-dependent hydrolase with the TIM-barrel fold K07048 PTER; phosphotriesterase-related protein D Thethe_02016 hypothetical protein K03744 lemA; LemA protein D Thethe_00247 putative membrane-associated protein K03975 dedA; membrane-associated protein D Thethe_02091 YhgE/Pip-like protein K01421 yhgE; putative membrane protein D Thethe_01126 Membrane protein of unknown function K08972 K08972; putative membrane protein D Thethe_01615 putative membrane protein (DUF2078) K08982 K08982; putative membrane protein C 99997 Function unknown D Thethe_00298 radical SAM additional 4Fe4S-binding domain protein K06871 K06871; uncharacterized protein D Thethe_01527 six-Cys-in-45 modification radical SAM protein K06871 K06871; uncharacterized protein D Thethe_02015 beta-propeller domain-containing protein, methanol dehydrogenase K06872 K06872; uncharacterized protein D Thethe_00775 prolyl oligopeptidase family protein K06889 K06889; uncharacterized protein D Thethe_00524 putative ATPase (AAA+ superfamily) K06923 K06923; uncharacterized protein D Thethe_01544 putative CoA-binding protein K06929 K06929; uncharacterized protein D Thethe_02038 putative DNA-binding protein K06933 K06933; uncharacterized protein D Thethe_02456 putative DNA-binding protein with PD1-like DNA-binding motif K06934 K06934; uncharacterized protein D Thethe_01437 putative RNA-binding protein (contains KH domain) K06960 K06960; uncharacterized protein D Thethe_00363 putative RNA-binding protein containing a PIN domain K06962 K06962; uncharacterized protein D Thethe_00452 membrane complex biogenesis protein, BtpA family K06971 K06971; uncharacterized protein D Thethe_01490 putative Zn-dependent protease K06973 K06973; uncharacterized protein D Thethe_00513 putative flavin-nucleotide-binding protein K07005 K07005; uncharacterized protein D Thethe_02492 putative exonuclease of the beta-lactamase fold involved in RNA processing K07041 K07041; uncharacterized protein D Thethe_02272 flagellar operon protein TIGR03826 K07068 K07068; uncharacterized protein D Thethe_00928 putative nucleotidyltransferase K07075 K07075; uncharacterized protein D Thethe_00817 putative oxidoreductase of aldo/keto reductase family K07079 K07079; uncharacterized protein D Thethe_00216 putative oxidoreductase of aldo/keto reductase family K07079 K07079; uncharacterized protein D Thethe_02394 putative permease K07090 K07090; uncharacterized protein D Thethe_00084 putative permease K07090 K07090; uncharacterized protein D Thethe_01541 putative permease K07090 K07090; uncharacterized protein D Thethe_01542 putative permease K07090 K07090; uncharacterized protein D Thethe_02086 phosphoesterase, MJ0936 family K07095 K07095; uncharacterized protein D Thethe_02154 phosphoesterase, MJ0936 family K07095 K07095; uncharacterized protein D Thethe_00454 putative phosphoesterase, ICC K07096 K07096; uncharacterized protein D Thethe_02245 putative small molecule binding protein (contains 3H domain) K07105 K07105; uncharacterized protein D Thethe_02737 FAD-dependent dehydrogenase K07137 K07137; uncharacterized protein D Thethe_02554 uncharacterized Fe-S center protein K07138 K07138; uncharacterized protein D Thethe_02220 uncharacterized membrane protein, possible Na+ channel or pump K07150 K07150; uncharacterized protein D Thethe_02775 hypothetical protein K08998 K08998; uncharacterized protein D Thethe_01144 hypothetical protein K09117 K09117; uncharacterized protein D Thethe_00032 hypothetical protein K09118 K09118; uncharacterized protein D Thethe_02683 hypothetical protein K09155 K09155; uncharacterized protein D Thethe_00521 hypothetical protein K09155 K09155; uncharacterized protein D Thethe_00294 hypothetical protein K09157 K09157; uncharacterized protein D Thethe_00288 hypothetical protein K09706 K09706; uncharacterized protein D Thethe_01491 hypothetical protein K09729 K09729; uncharacterized protein D Thethe_01392 putative polymerase with PALM domain, HD hydrolase domain and Zn ribbon K09749 K09749; uncharacterized protein D Thethe_01192 putative polymerase with PALM domain, HD hydrolase domain and Zn ribbon K09749 K09749; uncharacterized protein D Thethe_00979 hypothetical protein K09766 K09766; uncharacterized protein D Thethe_00080 hypothetical protein K09770 K09770; uncharacterized protein D Thethe_00985 hypothetical protein K09776 K09776; uncharacterized protein D Thethe_01440 hypothetical protein K09787 K09787; uncharacterized protein D Thethe_00658 hypothetical protein K09955 K09955; uncharacterized protein D Thethe_02398 hypothetical protein K09963 K09963; uncharacterized protein D Thethe_02378 hypothetical protein K01163 K01163; uncharacterized protein D Thethe_01083 putative ribosomal protein K07584 ysxB; uncharacterized protein D Thethe_02414 phosphate transport regulator related to PhoU K07220 K07220; uncharacterized protein D Thethe_01376 putative nucleic-acid-binding protein implicated in transcription termination K07742 ylxR; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 15, 2024