+E Ribosome biogenesis KO
#
Ribosome Biogenesis - Teredinibacter turnerae
%
!
AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D TERTU_1188 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D TERTU_3568 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C TERTU_1189 era; GTP-binding protein Era K03595 era; GTPase
C TERTU_0962 obgE; GTP-binding protein Obg/CgtA K03979 obgE; GTPase [EC:3.6.5.-]
#
AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C TERTU_0575 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
C TERTU_3218 transcription elongation / termination protein, N utilization substance A K02600 nusA; transcription termination/antitermination protein NusA
C TERTU_3700 putative transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
C TERTU_0877 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D TERTU_1925 rsuA; ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D TERTU_3145 ksgA; dimethyladenosine transferaseS-adenosylmethionine-6-N',N'-adenosyl dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D TERTU_0035 rsmB; ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D TERTU_1924 RNA methyltransferase, RsmC family K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D TERTU_0247 rsmD; 16S rRNA m2G966 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D TERTU_3979 rsmE; 16S rRNA m3U1498 methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D TERTU_4728 rsmG; 16S rRNA m7G527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D TERTU_3057 mraW; SAM-dependent methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D TERTU_3664 putative tetrapyrrole methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D TERTU_0994 putative SAM-dependent methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D TERTU_4664 RNA methyltransferase, FtsJ family K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D TERTU_2598 rrmA; ribosomal RNA large subunit methyltransferase A K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D TERTU_2479 RNA methyltransferase, TrmH family K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D TERTU_0546 rlmB; 23S rRNA-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D TERTU_3265 rrmJ; ribosomal RNA large subunit methyltransferase J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D TERTU_0602 conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D TERTU_3375 putative RNA methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D TERTU_3377 conserved hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D TERTU_2425 rlmL; 23S rRNA m2G2445 methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D TERTU_1121 RNA 2'-O-ribose methyltransferase, RrmJ family K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D TERTU_2636 rlmN; 23S rRNA m2A2503 methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D TERTU_4664 RNA methyltransferase, FtsJ family K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D TERTU_4342 RNA methyltransferase, TrmA family K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D TERTU_1726 rluA; pseudouridine synthase for 23S rRNA and tRNAphe K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D TERTU_1920 pseudouridine synthase, Rlu family K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D TERTU_2469 rluB; ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D TERTU_1710 rluC; ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D TERTU_1054 rluD; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D TERTU_1959 rluE; ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
B ribosomal protein modification factors
C TERTU_3417 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C TERTU_0100 ribosomal-protein-alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C TERTU_3384 alpha-L-glutamate ligase, RimK family K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C TERTU_1252 acetyltransferase family protein K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C TERTU_1160 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C TERTU_0613 rimO; ribosomal protein S12 methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C TERTU_3081 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C TERTU_2508 prmB; protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C TERTU_1748 cupin 4 family protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C TERTU_1188 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C TERTU_1708 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
C TERTU_3830 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-]
C TERTU_0227 conserved hypothetical protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C TERTU_3536 ATP-independent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C TERTU_2534 dbpA; cold-shock DEAD box protein A dbpA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C TERTU_1189 era; GTP-binding protein Era K03595 era; GTPase
C TERTU_3569 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C TERTU_2565 putative GTPase EngC protein 2 K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C TERTU_2630 GTP-binding protein EngA K03977 engA; GTPase
C TERTU_0962 obgE; GTP-binding protein Obg/CgtA K03979 obgE; GTPase [EC:3.6.5.-]
C TERTU_3557 hflX; GTP-binding proten HflX K03665 hflX; GTPase
B Other maturation factors
C TERTU_0041 protein YrdC K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C TERTU_0172 spoT; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C TERTU_3216 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C TERTU_3219 conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP
C TERTU_0601 polyA polymerase, iojap protein K09710 ybeB; ribosome-associated protein
C TERTU_3876 conserved hypothetical protein TIGR00043 K07042 ybeY; probable rRNA maturation factor
C TERTU_3266 RNA-binding protein, translation initiation factor K07574 yhbY; RNA-binding protein
C TERTU_3827 conserved hypothetical protein K09889 yjgA; ribosome-associated protein
C TERTU_2426 putative ribosome modulation factor K03812 rmf; ribosome modulation factor
C TERTU_3543 raiA; ribosomal subunit interface protein K05809 raiA; ribosome-associated inhibitor A
C TERTU_3854 ychF; GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
C TERTU_1715 conserved hypothetical protein K07040 yceD; DUF177 domain-containing protein
#
ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 9, 2024