+F Repair protein KO
#
DNA Repair and Recombination Proteins - Uloborus diversus
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 129220588 DNA oxidative demethylase ALKBH2-like K10859 ALKBH2; DNA oxidative demethylase [EC:1.14.11.33]
D 129221248 DNA oxidative demethylase ALKBH2-like K10859 ALKBH2; DNA oxidative demethylase [EC:1.14.11.33]
D 129230186 DNA oxidative demethylase ALKBH2-like K10859 ALKBH2; DNA oxidative demethylase [EC:1.14.11.33]
D 129218749 uncharacterized protein LOC129218749 K10859 ALKBH2; DNA oxidative demethylase [EC:1.14.11.33]
D 129224039 activating signal cointegrator 1 complex subunit 3-like K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4]
D 129229455 deoxyribodipyrimidine photo-lyase-like K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 129219367 uracil-DNA glycosylase-like K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 129218656 uncharacterized protein LOC129218656 K20813 TDG; thymine-DNA glycosylase [EC:3.2.2.29]
E 129226477 uncharacterized protein LOC129226477 K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 129226543 uncharacterized protein LOC129226543 K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 129222625 single-strand selective monofunctional uracil DNA glycosylase-like K10800 SMUG1; single-strand selective monofunctional uracil DNA glycosylase [EC:3.2.2.-]
E 129216815 adenine DNA glycosylase-like K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 129217134 methyl-CpG-binding domain protein 4-like K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E 129220497 LOW QUALITY PROTEIN: N-glycosylase/DNA lyase-like K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 129221200 DNA-(apurinic or apyrimidinic site) endonuclease 2-like K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F 129227497 DNA polymerase delta catalytic subunit-like K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 129224585 DNA polymerase delta subunit 2-like K02328 POLD2; DNA polymerase delta subunit 2
F 129227106 DNA polymerase delta subunit 3-like K03504 POLD3; DNA polymerase delta subunit 3
E DNA polymerase epsilon complex
F 129226801 DNA polymerase epsilon catalytic subunit A-like K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F 129229983 DNA polymerase epsilon subunit 2-like K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F 129230011 DNA polymerase epsilon subunit 2-like K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F 129232496 DNA polymerase epsilon subunit 3-like K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
F 129235153 DNA polymerase epsilon subunit 3-like K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
F 129225782 DNA polymerase epsilon subunit 3-like K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
F 129229750 DNA polymerase epsilon subunit 4-like K03506 POLE4; DNA polymerase epsilon subunit 4 [EC:2.7.7.7]
E 129234183 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
E 129225277 flap endonuclease 1-like K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E 129221522 DNA ligase 1-like K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
E 129225785 DNA polymerase beta-like K02330 POLB; DNA polymerase beta [EC:2.7.7.7 4.2.99.-]
E 129227566 DNA repair protein XRCC1-like K10803 XRCC1; DNA-repair protein XRCC1
E 129228554 DNA ligase 3-like K10776 LIG3; DNA ligase 3 [EC:6.5.1.1]
D Other BER factors
E 129224310 tyrosyl-DNA phosphodiesterase 1-like isoform X1 K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E 129222386 aprataxin-like isoform X1 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 129229694 uncharacterized protein F21D5.5-like K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E 129220110 LOW QUALITY PROTEIN: high mobility group protein DSP1-like K10802 HMGB1; high mobility group protein B1
E 129224173 poly [ADP-ribose] polymerase 1-like K24070 PARP1; poly [ADP-ribose] polymerase 1 [EC:2.4.2.30]
E 129231526 poly [ADP-ribose] polymerase 2-like K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F 129220077 DNA repair protein complementing XP-C cells homolog isoform X1 K10838 XPC; xeroderma pigmentosum group C-complementing protein
F 129220361 DNA repair protein complementing XP-C cells-like K10838 XPC; xeroderma pigmentosum group C-complementing protein
F 129216926 UV excision repair protein RAD23 homolog B-like K10839 RAD23; UV excision repair protein RAD23
F 129222203 uncharacterized protein LOC129222203 K10840 CETN2; centrin-2
E Cul4-DDB2 complex
F 129221561 RING-box protein 1A K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 129221921 cullin-4A-like K10609 CUL4; cullin 4
F 129225072 DNA damage-binding protein 1-like K10610 DDB1; DNA damage-binding protein 1
F 129229392 DNA damage-binding protein 2-like isoform X1 K10140 DDB2; DNA damage-binding protein 2
F 129230345 DNA damage-binding protein 2-like K10140 DDB2; DNA damage-binding protein 2
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F 129229195 DNA-directed RNA polymerase II subunit RPB1-like K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F 129221608 DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F 129227347 DNA-directed RNA polymerase II subunit RPB3-like K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F 129224655 DNA-directed RNA polymerases I, II, and III subunit RPABC1-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 129232139 DNA-directed RNA polymerases I, II, and III subunit RPABC2-like K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 129220346 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F 129229522 DNA-directed RNA polymerase II subunit RPB9-like K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 129221568 DNA-directed RNA polymerase II subunit RPB11-a K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
E Cul4-CSA complex
F 129221561 RING-box protein 1A K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 129221921 cullin-4A-like K10609 CUL4; cullin 4
F 129225072 DNA damage-binding protein 1-like K10610 DDB1; DNA damage-binding protein 1
F 129221739 DNA excision repair protein ERCC-8-like K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F 129228010 DNA excision repair protein ERCC-6-like K10841 ERCC6; DNA excision repair protein ERCC-6
F 129232151 UV-stimulated scaffold protein A-like K23720 UVSSA; UV-stimulated scaffold protein A
D TFIIH complex
E 129221884 general transcription and DNA repair factor IIH helicase subunit XPB-like K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 129219776 general transcription and DNA repair factor IIH helicase subunit XPD-like K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E 129221195 general transcription and DNA repair factor IIH helicase subunit XPD-like K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E 129220412 general transcription factor IIH subunit 1-like K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E 129222782 general transcription factor IIH subunit 2-like K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E 129224671 general transcription factor IIH subunit 3-like K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E 129230106 general transcription factor IIH subunit 4-like K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E 129229379 cyclin-dependent kinase 7-like K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 129229498 cyclin-H-like isoform X1 K06634 CCNH; cyclin H
E 129224657 CDK-activating kinase assembly factor MAT1-like K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E 129227039 replication protein A 70 kDa DNA-binding subunit-like K07466 RFA1; replication factor A1
E 129217368 replication protein A 32 kDa subunit-like K10739 RFA2; replication factor A2
D Other NER factors
E 129233450 DNA repair protein complementing XP-A cells homolog isoform X1 K10847 XPA; DNA-repair protein complementing XP-A cells
E 129233737 DNA repair protein complementing XP-A cells homolog K10847 XPA; DNA-repair protein complementing XP-A cells
E 129217800 DNA excision repair protein ERCC-1-like K10849 ERCC1; DNA excision repair protein ERCC-1
E 129222475 DNA repair endonuclease XPF-like K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E 129221522 DNA ligase 1-like K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 129234121 cullin-3-like K03869 CUL3; cullin 3
E 129216187 cullin-5-like K10612 CUL5; cullin 5
E 129230993 elongin-C-like K03872 ELOC; elongin-C
E 129229463 elongin-B-like K03873 ELOB; elongin-B
E 129218456 transcription elongation factor B polypeptide 3-like K15076 ELOA; elongin-A
E 129230082 LOW QUALITY PROTEIN: protein lingerer-like K26545 UBAP2; ubiquitin-associated protein 2
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 129224235 DNA mismatch repair protein Msh2-like K08735 MSH2; DNA mismatch repair protein MSH2
E 129224762 DNA mismatch repair protein Msh3-like K08736 MSH3; DNA mismatch repair protein MSH3
E 129224081 DNA mismatch repair protein Msh6-like K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E 129228344 DNA mismatch repair protein Mlh1-like K08734 MLH1; DNA mismatch repair protein MLH1
E 129232836 mismatch repair endonuclease PMS2-like K10858 PMS2; DNA mismatch repair protein PMS2
D DNA polymerase delta complex
E 129227497 DNA polymerase delta catalytic subunit-like K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 129224585 DNA polymerase delta subunit 2-like K02328 POLD2; DNA polymerase delta subunit 2
E 129227106 DNA polymerase delta subunit 3-like K03504 POLD3; DNA polymerase delta subunit 3
D RPA (replication factor A)
E 129227039 replication protein A 70 kDa DNA-binding subunit-like K07466 RFA1; replication factor A1
E 129217368 replication protein A 32 kDa subunit-like K10739 RFA2; replication factor A2
D RFC (replication factor C)
E 129223376 replication factor C subunit 1-like isoform X1 K10754 RFC1; replication factor C subunit 1
E 129220216 replication factor C subunit 4-like K10755 RFC2_4; replication factor C subunit 2/4
E 129223767 replication factor C subunit 2-like K10755 RFC2_4; replication factor C subunit 2/4
E 129221142 replication factor C subunit 5-like K10756 RFC3_5; replication factor C subunit 3/5
E 129221229 replication factor C subunit 3-like K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E 129234183 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
E 129220110 LOW QUALITY PROTEIN: high mobility group protein DSP1-like K10802 HMGB1; high mobility group protein B1
E 129221522 DNA ligase 1-like K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 129229359 LOW QUALITY PROTEIN: WD repeat-containing protein 76-like K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E 129227655 LOW QUALITY PROTEIN: double-strand break repair protein MRE11-like K10865 MRE11; double-strand break repair protein MRE11
E 129227341 LOW QUALITY PROTEIN: DNA repair protein RAD50-like K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 129230200 nibrin-like isoform X1 K10867 NBN; nibrin
D BRCA1-core complex
E 129226886 BRCA1-associated RING domain protein 1-like K10683 BARD1; BRCA1-associated RING domain protein 1
D BRCA1-A complex
E 129224848 BRISC and BRCA1-A complex member 1-like K20776 BABAM; BRISC and BRCA1-A complex member 1
E 129223423 BRISC and BRCA1-A complex member 2-like K12173 BRE; BRCA1-A complex subunit BRE
E 129218612 lys-63-specific deubiquitinase BRCC36-like K11864 BRCC3; BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
D BRCA1-B complex
E 129220645 DNA topoisomerase 2-binding protein 1-like K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
D BRCA1-C complex
E 129227655 LOW QUALITY PROTEIN: double-strand break repair protein MRE11-like K10865 MRE11; double-strand break repair protein MRE11
E 129227341 LOW QUALITY PROTEIN: DNA repair protein RAD50-like K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 129230200 nibrin-like isoform X1 K10867 NBN; nibrin
D BRCA complex
E 129227733 DNA repair protein RAD51 homolog 1-like K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E 129227733 DNA repair protein RAD51 homolog 1-like K04482 RAD51; DNA repair protein RAD51
E 129222785 DNA repair protein RAD51 homolog 2-like isoform X1 K10869 RAD51L1; RAD51-like protein 1
E 129222743 DNA repair protein RAD51 homolog 3-like K10870 RAD51L2; RAD51-like protein 2
E 129220033 DNA repair protein RAD51 homolog 4-like isoform X1 K10871 RAD51L3; RAD51-like protein 3
E 129219196 DNA repair protein XRCC2-like K10879 XRCC2; DNA-repair protein XRCC2
E 129219240 DNA repair protein XRCC2-like isoform X1 K10879 XRCC2; DNA-repair protein XRCC2
E 129229852 DNA repair protein XRCC3-like K10880 XRCC3; DNA-repair protein XRCC3
D Rad52 family proteins
D Rad54 family proteins
E 129234450 DNA repair and recombination protein RAD54-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 129220845 DNA repair and recombination protein RAD54B-like K10877 RAD54B; DNA repair and recombination protein RAD54B [EC:5.6.2.-]
D RecQ family DNA helicases
E 129220317 LOW QUALITY PROTEIN: ATP-dependent DNA helicase Q1-like K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 129219155 bifunctional 3'-5' exonuclease/ATP-dependent helicase WRN-like K10900 WRN; werner syndrome ATP-dependent helicase [EC:5.6.2.4]
E 129234202 bifunctional 3'-5' exonuclease/ATP-dependent helicase WRN-like K10900 WRN; werner syndrome ATP-dependent helicase [EC:5.6.2.4]
E 129233445 ATP-dependent DNA helicase Q4-like K10730 RECQL4; ATP-dependent DNA helicase Q4 [EC:5.6.2.4]
E 129228573 LOW QUALITY PROTEIN: ATP-dependent DNA helicase Q5-like K10902 RECQL5; ATP-dependent DNA helicase Q5 [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E 129221912 DNA topoisomerase 3-beta-1-like isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 129230713 DNA topoisomerase 3-alpha-like K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 129225060 uncharacterized protein LOC129225060 K15365 RMI2; RecQ-mediated genome instability protein 2
D RPA (replication factor A)
E 129227039 replication protein A 70 kDa DNA-binding subunit-like K07466 RFA1; replication factor A1
E 129217368 replication protein A 32 kDa subunit-like K10739 RFA2; replication factor A2
D Protein phosphatase 4
E 129234549 serine/threonine-protein phosphatase 4 catalytic subunit K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E 129234764 serine/threonine-protein phosphatase 4 regulatory subunit 1-like K15424 PPP4R1; serine/threonine-protein phosphatase 4 regulatory subunit 1
E 129222436 serine/threonine-protein phosphatase 4 regulatory subunit 3A-like K17491 SMEK; protein phosphatase 4 regulatory subunit 3
E 129223387 serine/threonine-protein phosphatase 4 regulatory subunit 3A-like isoform X1 K17491 SMEK; protein phosphatase 4 regulatory subunit 3
E 129233666 serine/threonine-protein phosphatase 4 regulatory subunit 4-like K15426 PPP4R4; serine/threonine-protein phosphatase 4 regulatory subunit 4
E 129216693 serine/threonine-protein phosphatase 4 regulatory subunit 4-like K15426 PPP4R4; serine/threonine-protein phosphatase 4 regulatory subunit 4
D AP-5 complex
E 129228520 AP-5 complex subunit beta-1-like K19022 AP5B1; AP-5 complex subunit beta-1
E 129222295 AP-5 complex subunit mu-1-like isoform X1 K19023 AP5M1; AP-5 complex subunit mu-1
E 129234593 uncharacterized protein LOC129234593 K19024 AP5S1; AP-5 complex subunit sigma-1
E 129223704 AP-5 complex subunit zeta-1-like K19025 AP5Z1; AP-5 complex subunit zeta-1
D SMC5-SMC6 complex
E 129221894 structural maintenance of chromosomes protein 5-like K22803 SMC5; structural maintenance of chromosomes protein 5
E 129227721 structural maintenance of chromosomes protein 6-like K22804 SMC6; structural maintenance of chromosomes protein 6
E 129227160 non-structural maintenance of chromosomes element 1 homolog K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E 129221854 E3 SUMO-protein ligase NSE2-like K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E 129217673 non-structural maintenance of chromosomes element 3 homolog isoform X1 K22823 NSMCE3; non-structural maintenance of chromosomes element 3
E 129229802 EP300-interacting inhibitor of differentiation 3-like K22826 EID3; EP300-interacting inhibitor of differentiation 3
D Other HR factors
E 129233422 crossover junction endonuclease EME1-like K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E 129225571 exonuclease 3'-5' domain-containing protein 2-like K20777 EXD2; exonuclease 3'-5' domain-containing protein 2 [EC:3.1.11.1]
E 129217563 crossover junction endonuclease MUS81-like K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E 129222906 26S proteasome complex subunit SEM1-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 129217492 26S proteasome complex subunit SEM1-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 129224717 DNA repair protein SWI5 homolog K10991 SWI5; DNA repair protein Swi5/Sae3
E 129224470 structure-specific endonuclease subunit slx1-like K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 129224388 flap endonuclease GEN homolog 1-like K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 129221222 mortality factor 4-like protein 1 K11339 MORF4L1; mortality factor 4-like protein 1
E 129233296 mortality factor 4-like protein 1 K11339 MORF4L1; mortality factor 4-like protein 1
E 129217120 mortality factor 4-like protein 1 K11339 MORF4L1; mortality factor 4-like protein 1
E 129219786 deoxynucleoside triphosphate triphosphohydrolase SAMHD1-like K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 129216898 fidgetin-like protein 1 K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E 129217367 cilia- and flagella-associated protein 410-like K23456 CFAP410; cilla- and flagella-associated protein
E 129228646 zinc finger SWIM domain-containing protein 7-like K25770 ZSWIM7; zinc finger SWIM domain-containing protein 7
E 129216318 protein MMS22-like K26125 MMS22L; protein MMS22-like
E 129224798 tonsoku-like protein K09257 NFKBIL2; NF-kappa-B inhibitor-like protein 2
E 129216206 biorientation of chromosomes in cell division protein 1-like 1 K27262 BOD1L1; biorientation of chromosomes in cell division protein 1-like 1
E 129226674 PCNA-interacting partner-like K27412 PARPBP; PCNA-interacting partner
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E 129224004 X-ray repair cross-complementing protein 6-like K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E 129231284 X-ray repair cross-complementing protein 5-like isoform X1 K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
E 129231618 X-ray repair cross-complementing protein 5-like K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
E 129223279 X-ray repair cross-complementing protein 5-like K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
E 129220818 DNA-dependent protein kinase catalytic subunit-like K06642 PRKDC; DNA-dependent protein kinase catalytic subunit [EC:2.7.11.1]
D MRX complex
E 129227655 LOW QUALITY PROTEIN: double-strand break repair protein MRE11-like K10865 MRE11; double-strand break repair protein MRE11
E 129227341 LOW QUALITY PROTEIN: DNA repair protein RAD50-like K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
E 129227997 DNA ligase 4-like K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E 129216741 uncharacterized protein LOC129216741 K10886 XRCC4; DNA-repair protein XRCC4
D X-family DNA polymerases
E 129225785 DNA polymerase beta-like K02330 POLB; DNA polymerase beta [EC:2.7.7.7 4.2.99.-]
D Other NHEJ factors
E 129222386 aprataxin-like isoform X1 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 129217301 tyrosyl-DNA phosphodiesterase 2-like K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
C FA (Fanconi anemia) pathway
D FA core complex
E 129224029 E3 ubiquitin-protein ligase FANCL-like isoform X1 K10606 FANCL; E3 ubiquitin-protein ligase FANCL [EC:2.3.2.27]
E 129225230 Fanconi anemia core complex-associated protein 24-like K10898 FAAP24; fanconi anemia-associated protein
D FA core complex binding factors
E 129230344 protein deadpan-like K06054 HES1; hairy and enhancer of split 1
E 129225661 transcription factor HES-1-A-like K06054 HES1; hairy and enhancer of split 1
E 129225676 transcription factor HES-4-A-like K06054 HES1; hairy and enhancer of split 1
E 129218459 centromere protein S-like K11511 APITD1; centromere protein S
E 129216328 uncharacterized protein LOC129216328 isoform X1 K15360 STRA13; centromere protein X
E 129234481 ubiquitin-conjugating enzyme E2 T-like K13960 UBE2T; ubiquitin-conjugating enzyme E2 T [EC:2.3.2.23]
D Bloom's syndrome complex (BTR)
E 129221912 DNA topoisomerase 3-beta-1-like isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 129230713 DNA topoisomerase 3-alpha-like K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 129225060 uncharacterized protein LOC129225060 K15365 RMI2; RecQ-mediated genome instability protein 2
D FANCD2-I complex
E 129226997 Fanconi anemia group D2 protein-like K10891 FANCD2; fanconi anemia group D2 protein
E 129220660 Fanconi anemia group I protein-like K10895 FANCI; fanconi anemia group I protein
D Downstream FA components
D Other FA pathway factors
E 129230386 fanconi-associated nuclease 1-like K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E 129227733 DNA repair protein RAD51 homolog 1-like K04482 RAD51; DNA repair protein RAD51
E 129222743 DNA repair protein RAD51 homolog 3-like K10870 RAD51L2; RAD51-like protein 2
E 129225976 telomere length regulation protein TEL2 homolog K11137 TELO2; telomere length regulation protein
E 129231794 WD repeat-containing protein 48-like K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
E 129225186 serine/threonine-protein phosphatase 6 catalytic subunit K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E 129219299 serine/threonine-protein phosphatase 6 regulatory subunit 3-like K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E 129225700 serine/threonine-protein phosphatase 6 regulatory subunit 3-like K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E 129226196 serine/threonine-protein phosphatase 6 regulatory subunit 3-A-like K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E 129219961 serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like K15503 ANKRD44; serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B
D Ubiquitin ligases
E 129222583 E3 ubiquitin-protein ligase RNF8-like K10667 RNF8; E3 ubiquitin-protein ligase RNF8 [EC:2.3.2.27]
E 129231190 E3 ubiquitin-protein ligase HERC2-like K10595 HERC2; E3 ubiquitin-protein ligase HERC2 [EC:2.3.2.26]
D Others
E 129226165 LOW QUALITY PROTEIN: telomerase Cajal body protein 1-like K23314 WRAP53; telomerase Cajal body protein 1
E 129229413 WD repeat-containing protein 70-like K24752 WDR70; WD repeat-containing protein 70
E 129229359 LOW QUALITY PROTEIN: WD repeat-containing protein 76-like K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D 129222218 DNA polymerase eta-like K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D 129233907 DNA polymerase kappa-like isoform X1 K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D 129225989 DNA repair protein REV1-like K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
D 129222038 ubiquitin-conjugating enzyme E2 A K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 129229788 ubiquitin-conjugating enzyme E2 variant 1-like K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 129229789 ubiquitin-conjugating enzyme E2 variant 2-like K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 129229467 ubiquitin-conjugating enzyme E2 N-like K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
D 129231285 LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 N-like K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D 129234183 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
D 129226674 PCNA-interacting partner-like K27412 PARPBP; PCNA-interacting partner
D 129216442 DNA-dependent metalloprotease SPRTN-like isoform X1 K24051 SPRTN; SprT-like domain-contaning protein Spartan
D 129221048 germ cell nuclear acidic protein-like K26957 GCNA; germ cell nuclear acidic protein
B Check point factors
C Rad9-Hus1-Rad1 complex
D 129220074 cell cycle checkpoint control protein RAD9A-like K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D 129220363 checkpoint protein HUS1-like K10903 HUS1; HUS1 checkpoint protein
D 129234425 cell cycle checkpoint protein RAD1-like K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D 129226018 cell cycle checkpoint protein RAD17-like K06662 HRAD17; cell cycle checkpoint protein
D 129220216 replication factor C subunit 4-like K10755 RFC2_4; replication factor C subunit 2/4
D 129223767 replication factor C subunit 2-like K10755 RFC2_4; replication factor C subunit 2/4
D 129221142 replication factor C subunit 5-like K10756 RFC3_5; replication factor C subunit 3/5
D 129221229 replication factor C subunit 3-like K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D 129234425 cell cycle checkpoint protein RAD1-like K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D 129228448 protein timeless homolog K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D 129228449 protein timeless homolog K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
C Triple T complex
D 129225976 telomere length regulation protein TEL2 homolog K11137 TELO2; telomere length regulation protein
D 129235219 TELO2-interacting protein 1 homolog K20403 TTI1; TELO2-interacting protein 1
C BAG6-UBL4A-GET4 complex
C Other check point factors
D 129228679 serine-protein kinase ATM-like K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D 129229375 cellular tumor antigen p53-like K04451 TP53; tumor protein p53
D 129230379 cellular tumor antigen p53-like K04451 TP53; tumor protein p53
D 129234567 serine/threonine-protein kinase Chk1-like K02216 CHEK1; serine/threonine-protein kinase CHEK1 [EC:2.7.11.1]
D 129222825 M-phase inducer phosphatase-like K05866 CDC25B; M-phase inducer phosphatase 2 [EC:3.1.3.48]
D 129224568 M-phase inducer phosphatase-like K05866 CDC25B; M-phase inducer phosphatase 2 [EC:3.1.3.48]
D 129219426 14-3-3 protein zeta-like K16197 YWHAB_Q_Z; 14-3-3 protein beta/theta/zeta
D 129232434 14-3-3 protein zeta-like K16197 YWHAB_Q_Z; 14-3-3 protein beta/theta/zeta
D 129216950 14-3-3 protein zeta isoform X1 K16197 YWHAB_Q_Z; 14-3-3 protein beta/theta/zeta
D 129228045 14-3-3 protein epsilon K06630 YWHAE; 14-3-3 protein epsilon
D 129225307 14-3-3 protein epsilon K06630 YWHAE; 14-3-3 protein epsilon
D 129230050 neuron navigator 2-like isoform X1 K19483 NAV2; neuron navigator 2 [EC:5.6.2.4]
D 129226356 wee1-like protein kinase K06632 WEE1; wee1-like protein kinase [EC:2.7.11.1]
D 129218165 plastin-1-like K17336 PLS3; plastin-3
D 129225711 protein downstream neighbor of Son-like K22422 DONSON; protein downstream neighbor of Son
D 129227045 vacuolar protein sorting-associated protein 4-like K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 129221137 splicing regulator SDE2-like K25059 SDE2; replication stress response regulator SDE2
B Other factors with a suspected DNA repair function
C DNA polymerases
D 129219690 myb-binding protein 1A-like protein K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
D 129221047 DNA-directed primase/polymerase protein-like K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
C Nucleases
D 129216068 5' exonuclease Apollo-like K15341 DCLRE1B; DNA cross-link repair 1B protein [EC:3.1.-.-]
D 129232684 5' exonuclease Apollo-like K15341 DCLRE1B; DNA cross-link repair 1B protein [EC:3.1.-.-]
D 129224574 ankyrin repeat and LEM domain-containing protein 1-like K21411 ANKLE1; ankyrin repeat and LEM domain-containing protein 1
C Helicases
D 129229685 helicase POLQ-like K19178 HELQ; POLQ-like helicase [EC:5.6.2.4]
C PSO4 complex
D 129221611 pre-mRNA-processing factor 19-like K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D 129230576 cell division cycle 5-like protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D 129225993 pre-mRNA-splicing factor SPF27-like K12861 BCAS2; pre-mRNA-splicing factor SPF27
D 129221307 pleiotropic regulator 1-like K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D 129235031 nucleotide triphosphate diphosphatase NUDT15-like K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 129228109 oxidized purine nucleoside triphosphate hydrolase-like K17816 NUDT1; 8-oxo-dGTP diphosphatase / 2-hydroxy-dATP diphosphatase [EC:3.6.1.55 3.6.1.56]
D 129227688 8-oxo-dGDP phosphatase NUDT18-like K17817 NUDT18; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
D 129220994 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 129233541 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 129224733 ribonucleoside-diphosphate reductase large subunit-like K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 129233538 ribonucleoside-diphosphate reductase subunit M2 B-like K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D 129233678 ribonucleoside-diphosphate reductase subunit M2-like K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D 129217681 ribonucleoside-diphosphate reductase subunit M2-like K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D 129217704 ribonucleoside-diphosphate reductase subunit M2-like K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D 129218797 LOW QUALITY PROTEIN: ribonucleoside-diphosphate reductase subunit M2-like K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 129229455 deoxyribodipyrimidine photo-lyase-like K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 129219367 uracil-DNA glycosylase-like K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 129222625 single-strand selective monofunctional uracil DNA glycosylase-like K10800 SMUG1; single-strand selective monofunctional uracil DNA glycosylase [EC:3.2.2.-]
E 129226477 uncharacterized protein LOC129226477 K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 129226543 uncharacterized protein LOC129226543 K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 129216815 adenine DNA glycosylase-like K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D AP endonucleases
D RecJ
D DNA ligase
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E 129229320 single-stranded DNA-binding protein, mitochondrial-like K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
D RecFOR pathway proteins
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D 129229320 single-stranded DNA-binding protein, mitochondrial-like K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D 129235031 nucleotide triphosphate diphosphatase NUDT15-like K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 129220994 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 129233541 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024