+D GENES KO
#
KEGG Orthology (KO) - Ureaplasma parvum serovar 3 ATCC 27815
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:upa00010]
D UPA3_0192 phosphofructokinase family protein K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D UPA3_0636 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D UPA3_0188 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D UPA3_0289 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D UPA3_0189 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D UPA3_0191 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D UPA3_0193 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D UPA3_0378 aldehyde dehydrogenase (NAD) family protein K00131 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP+) [EC:1.2.1.9]
C 00020 Citrate cycle (TCA cycle)
C 00030 Pentose phosphate pathway [PATH:upa00030]
D UPA3_0475 D-ribulose-5-phosphate 3 epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D UPA3_0625 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D UPA3_0006 sugar-phosphate isomerase, RpiB/LacA/LacB family K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D UPA3_0624 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D UPA3_0199 prs; ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D UPA3_0378 aldehyde dehydrogenase (NAD) family protein K00131 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP+) [EC:1.2.1.9]
D UPA3_0636 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D UPA3_0192 phosphofructokinase family protein K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00040 Pentose and glucuronate interconversions
D UPA3_0475 D-ribulose-5-phosphate 3 epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
C 00051 Fructose and mannose metabolism [PATH:upa00051]
D UPA3_0567 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D UPA3_0192 phosphofructokinase family protein K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D UPA3_0636 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D UPA3_0188 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D UPA3_0006 sugar-phosphate isomerase, RpiB/LacA/LacB family K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
C 00052 Galactose metabolism
D UPA3_0192 phosphofructokinase family protein K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00053 Ascorbate and aldarate metabolism
C 00500 Starch and sucrose metabolism
C 00520 Amino sugar and nucleotide sugar metabolism
D UPA3_0567 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
C 00620 Pyruvate metabolism [PATH:upa00620]
D UPA3_0502 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D UPA3_0065 phosphotransacetylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D UPA3_0193 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
C 00630 Glyoxylate and dicarboxylate metabolism
D UPA3_0120 phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
C 00640 Propanoate metabolism [PATH:upa00640]
D UPA3_0502 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D UPA3_0065 phosphotransacetylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
C 00650 Butanoate metabolism
C 00660 C5-Branched dibasic acid metabolism
C 00562 Inositol phosphate metabolism
D UPA3_0188 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:upa00190]
D UPA3_0052 ATP synthase subunit alpha 2 K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D UPA3_0138 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D UPA3_0135 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D UPA3_0053 ATP synthase F1, beta subunit family K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D UPA3_0136 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D UPA3_0139 ATP synthase delta subunit domain protein K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D UPA3_0140 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D UPA3_0134 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D UPA3_0143 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D UPA3_0141 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D UPA3_0142 ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D UPA3_0330 ppa; inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:upa00680]
D UPA3_0191 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D UPA3_0636 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D UPA3_0192 phosphofructokinase family protein K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D UPA3_0502 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D UPA3_0065 phosphotransacetylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D UPA3_0189 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
C 00910 Nitrogen metabolism
C 00920 Sulfur metabolism
D UPA3_0435 DHH family protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis
D UPA3_0535 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:upa00561]
D UPA3_0212 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D UPA3_0421 putative membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D UPA3_0360 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D UPA3_0021 triacylglycerol lipase K01046 lip; triacylglycerol lipase [EC:3.1.1.3]
C 00564 Glycerophospholipid metabolism [PATH:upa00564]
D UPA3_0398 NAD+ dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D UPA3_0421 putative membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D UPA3_0360 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D UPA3_0541 cdsA; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D UPA3_0380 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D UPA3_0627 cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:upa00230]
D UPA3_0199 prs; ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D UPA3_0506 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D UPA3_0291 deoD; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D UPA3_0107 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D UPA3_0220 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D UPA3_0293 ppGpp 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D UPA3_0054 membrane nuclease A - hypothetical K08693 yfkN; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase / 5'-nucleotidase [EC:3.1.4.16 3.1.3.6 3.1.3.5]
D UPA3_0526 conserved hypothetical protein K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D UPA3_0259 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D UPA3_0451 ureC; urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D UPA3_0452 ureB; urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D UPA3_0453 ureA; urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00240 Pyrimidine metabolism [PATH:upa00240]
D UPA3_0544 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D UPA3_0294 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D UPA3_0358 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D UPA3_0348 udk; uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D UPA3_0054 membrane nuclease A - hypothetical K08693 yfkN; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase / 5'-nucleotidase [EC:3.1.4.16 3.1.3.6 3.1.3.5]
D UPA3_0122 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D UPA3_0526 conserved hypothetical protein K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D UPA3_0568 cdd; cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D UPA3_0020 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D UPA3_0384 pdp; pyrimidine-nucleoside phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4]
D UPA3_0634 tdk; thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism
D UPA3_0379 asnA; aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
C 00260 Glycine, serine and threonine metabolism
D UPA3_0189 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
C 00270 Cysteine and methionine metabolism [PATH:upa00270]
D UPA3_0429 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D UPA3_0489 mtnN; MTA/SAH nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D UPA3_0565 cytosine-specific methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C 00280 Valine, leucine and isoleucine degradation
C 00290 Valine, leucine and isoleucine biosynthesis
C 00300 Lysine biosynthesis
C 00310 Lysine degradation
C 00220 Arginine biosynthesis
D UPA3_0451 ureC; urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D UPA3_0452 ureB; urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D UPA3_0453 ureA; urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00330 Arginine and proline metabolism
C 00340 Histidine metabolism
C 00350 Tyrosine metabolism
C 00360 Phenylalanine metabolism
C 00380 Tryptophan metabolism
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism
C 00430 Taurine and hypotaurine metabolism [PATH:upa00430]
D UPA3_0065 phosphotransacetylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D UPA3_0502 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:upa00450]
D UPA3_0473 aminotransferase NifS K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D UPA3_0073 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D UPA3_0203 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism
D UPA3_0379 asnA; aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
C 00470 D-Amino acid metabolism
C 00480 Glutathione metabolism [PATH:upa00480]
D UPA3_0537 cytosol aminopeptidase family protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D UPA3_0300 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis
D UPA3_0567 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
C 00550 Peptidoglycan biosynthesis
C 00552 Teichoic acid biosynthesis
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:upa00730]
D UPA3_0436 thiI; thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D UPA3_0224 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D UPA3_0259 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:upa00740]
D UPA3_0181 HAD hydrolase, IIB family K21064 ycsE; 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.104]
D UPA3_0371 riboflavin biosynthesis protein RibF homolog K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
C 00750 Vitamin B6 metabolism
C 00760 Nicotinate and nicotinamide metabolism [PATH:upa00760]
D UPA3_0286 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D UPA3_0291 deoD; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D UPA3_0054 membrane nuclease A - hypothetical K08693 yfkN; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase / 5'-nucleotidase [EC:3.1.4.16 3.1.3.6 3.1.3.5]
D UPA3_0488 nicotinate (nicotinamide) nucleotide adenylyltransferase/HD domain K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D UPA3_0479 nadE; NAD+ synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D UPA3_0082 competence/damage-inducible protein CinA C-domain K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D UPA3_0184 NAD(+)/NADH kinase family protein K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
C 00770 Pantothenate and CoA biosynthesis
D UPA3_0409 acpS; holo-(acyl-carrier-protein) synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
C 00780 Biotin metabolism
C 00785 Lipoic acid metabolism
C 00790 Folate biosynthesis [PATH:upa00790]
D UPA3_0367 NIF3 family protein K22391 E3.5.4.16; GTP cyclohydrolase I [EC:3.5.4.16]
D UPA3_0119 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
C 00670 One carbon pool by folate [PATH:upa00670]
D UPA3_0119 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D UPA3_0228 fhs; formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D UPA3_0353 methylenetetrahydrofolate dehydrogenase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D UPA3_0482 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis
D UPA3_0640 GHMP kinase, ATP-binding domain protein K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D UPA3_0625 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis
C 00261 Monobactam biosynthesis
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis
C 00401 Novobiocin biosynthesis
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
C 00333 Prodigiosin biosynthesis
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D UPA3_0535 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites
D UPA3_0429 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation
C 00627 Aminobenzoate degradation
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
D UPA3_0451 ureC; urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D UPA3_0452 ureB; urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D UPA3_0453 ureA; urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:upa03020]
D UPA3_0194 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D UPA3_0195 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D UPA3_0265 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D UPA3_0637 rpoE; DNA-directed RNA polymerase, delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:upa03010]
D UPA3_0026 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D UPA3_0245 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D UPA3_0515 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D UPA3_0256 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D UPA3_0591 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D UPA3_0561 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D UPA3_0253 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D UPA3_0615 rpsI; ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D UPA3_0238 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D UPA3_0264 rpsK; ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D UPA3_0562 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D UPA3_0263 rpsM; ribosomal protein S13p/S18e K02952 RP-S13; small subunit ribosomal protein S13
D UPA3_0252 rpsN; ribosomal protein S14p/S29e K02954 RP-S14; small subunit ribosomal protein S14
D UPA3_0210 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D UPA3_0607 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D UPA3_0248 rpsQ; ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D UPA3_0589 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D UPA3_0243 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D UPA3_0325 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D UPA3_0287 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D UPA3_0578 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D UPA3_0242 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D UPA3_0239 rplC; ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D UPA3_0240 rplD; ribosomal protein L4/L1 family K02926 RP-L4; large subunit ribosomal protein L4
D UPA3_0251 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D UPA3_0254 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D UPA3_0011 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D UPA3_0588 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D UPA3_0010 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D UPA3_0579 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D UPA3_0616 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D UPA3_0249 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D UPA3_0257 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D UPA3_0246 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D UPA3_0266 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D UPA3_0255 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D UPA3_0605 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D UPA3_0237 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D UPA3_0219 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D UPA3_0244 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D UPA3_0241 rplW; ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D UPA3_0250 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D UPA3_0217 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D UPA3_0216 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D UPA3_0247 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D UPA3_0002 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D UPA3_0349 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D UPA3_0571 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D UPA3_0644 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D UPA3_0236 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D UPA3_0262 rpmJ; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D UPA3_0117 small subunit ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D UPA3_0312 small subunit ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D UPA3_0118 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:upa00970]
D UPA3_0151 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D UPA3_0531 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D UPA3_0524 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D UPA3_0530 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D UPA3_0518 tRNA-Phe K14221 tRNA-Asp; tRNA Asp
D UPA3_0525 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D UPA3_0316 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D UPA3_0550 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D UPA3_0319 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D UPA3_0121 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D UPA3_0278 tRNA-His K14226 tRNA-His; tRNA His
D UPA3_0150 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D UPA3_0318 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D UPA3_0546 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D UPA3_0430 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D UPA3_0317 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D UPA3_0547 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D UPA3_0519 tRNA-Met K14230 tRNA-Met; tRNA Met
D UPA3_0521 tRNA-Met K14230 tRNA-Met; tRNA Met
D UPA3_0522 tRNA-Met K14230 tRNA-Met; tRNA Met
D UPA3_0523 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D UPA3_0520 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D UPA3_0628 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D UPA3_0549 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D UPA3_0569 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D UPA3_0315 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D UPA3_0536 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D UPA3_0639 gltX; glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D UPA3_0582 glutamyl-tRNA(Gln)/aspartyl-tRNA(Asn) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D UPA3_0581 glutamyl-tRNA(Gln)/aspartyl-tRNA(Asn) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D UPA3_0385 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D UPA3_0296 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D UPA3_0381 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D UPA3_0511 glyS; glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D UPA3_0572 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D UPA3_0109 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D UPA3_0129 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D UPA3_0203 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D UPA3_0482 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D UPA3_0275 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D UPA3_0387 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D UPA3_0427 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D UPA3_0061 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D UPA3_0288 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D UPA3_0471 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D UPA3_0295 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D UPA3_0477 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D UPA3_0476 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D UPA3_0123 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D UPA3_0182 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:upa03060]
D UPA3_0258 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D UPA3_0619 preprotein translocase, SecE subunit family K03073 secE; preprotein translocase subunit SecE
D UPA3_0055 conserved hypothetical protein K03075 secG; preprotein translocase subunit SecG
D UPA3_0507 putative lipoprotein K12257 secDF; SecD/SecF fusion protein
D UPA3_0642 membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D UPA3_0125 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D UPA3_0092 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D UPA3_0645 srpB; bacterial signal recognition particle RNA K01983 ffs; SRP RNA
D UPA3_0147 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D UPA3_0329 conserved hypothetical protein K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:upa04122]
D UPA3_0418 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D UPA3_0436 thiI; thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
C 03050 Proteasome
C 03018 RNA degradation [PATH:upa03018]
D UPA3_0191 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D UPA3_0056 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D UPA3_0084 hdod domain family K18682 rny; ribonucrease Y [EC:3.1.-.-]
D UPA3_0609 metallo-beta-lactamase superfamily protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D UPA3_0539 conserved hypothetical protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D UPA3_0192 phosphofructokinase family protein K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D UPA3_0355 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:upa03030]
D UPA3_0433 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D UPA3_0393 polC; DNA polymerase III, alpha subunit, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D UPA3_0087 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D UPA3_0019 DNA polymerase III delta subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D UPA3_0343 DNA polymerase III, delta subunit superfamily K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D UPA3_0078 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D UPA3_0587 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D UPA3_0512 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D UPA3_0590 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D UPA3_0413 rnhC; ribonuclease HIII K03471 rnhC; ribonuclease HIII [EC:3.1.26.4]
D UPA3_0127 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:upa03410]
D UPA3_0585 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D UPA3_0431 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D UPA3_0321 apurinic endonuclease (APN1) K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D UPA3_0127 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:upa03420]
D UPA3_0105 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D UPA3_0126 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D UPA3_0397 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
D UPA3_0527 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D UPA3_0127 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:upa03430]
D UPA3_0527 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D UPA3_0590 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D UPA3_0433 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D UPA3_0393 polC; DNA polymerase III, alpha subunit, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D UPA3_0078 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D UPA3_0087 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D UPA3_0343 DNA polymerase III, delta subunit superfamily K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D UPA3_0019 DNA polymerase III delta subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D UPA3_0127 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:upa03440]
D UPA3_0590 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D UPA3_0510 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D UPA3_0089 recombination protein RecR K06187 recR; recombination protein RecR
D UPA3_0083 recA; protein RecA K03553 recA; recombination protein RecA
D UPA3_0468 holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D UPA3_0467 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D UPA3_0037 divergent AAA domain family K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D UPA3_0433 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D UPA3_0393 polC; DNA polymerase III, alpha subunit, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D UPA3_0078 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D UPA3_0087 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D UPA3_0343 DNA polymerase III, delta subunit superfamily K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D UPA3_0019 DNA polymerase III delta subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:upa02010]
D UPA3_0113 putative lipoprotein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D UPA3_0112 spermidine/putrescine transport system permease K11070 potC; spermidine/putrescine transport system permease protein
D UPA3_0111 spermidine/putrescine transport system permease K11071 potB; spermidine/putrescine transport system permease protein
D UPA3_0110 spermidine/putrescine transport ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D UPA3_0016 putative membrane protein K07335 bmpA; basic membrane protein A and related proteins
D UPA3_0498 putative membrane protein K07335 bmpA; basic membrane protein A and related proteins
D UPA3_0234 putative membrane protein K07335 bmpA; basic membrane protein A and related proteins
D UPA3_0012 putative membrane protein K07335 bmpA; basic membrane protein A and related proteins
D UPA3_0014 ribose/galactose ABC transporter K23535 nupB; general nucleoside transport system permease protein
D UPA3_0013 ribose/galactose ABC transporter K23536 nupC; general nucleoside transport system permease protein
D UPA3_0015 methylgalactoside permease ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D UPA3_0204 conserved hypothetical protein K02040 pstS; phosphate transport system substrate-binding protein
D UPA3_0205 phosphate transport system permease K02037 pstC; phosphate transport system permease protein
D UPA3_0206 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D UPA3_0595 bacterial extracellular solute-binding protein, family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D UPA3_0600 oligopeptide transport system permease protein K15581 oppB; oligopeptide transport system permease protein
D UPA3_0599 oligopeptide transport system permease protein K15582 oppC; oligopeptide transport system permease protein
D UPA3_0598 oligopeptide transport system permease protein K15583 oppD; oligopeptide transport system ATP-binding protein
D UPA3_0597 oligopeptide transport system permease protein K10823 oppF; oligopeptide transport system ATP-binding protein
D UPA3_0575 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein
D UPA3_0577 cobalt import ATP-binding protein CbiO 2 K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D UPA3_0576 cobalt import ATP-binding protein CbiO 1 K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
C 02060 Phosphotransferase system (PTS) [PATH:upa02060]
D UPA3_0626 phosphohistidinoprotein-hexose phosphotransferase K02784 ptsH; phosphocarrier protein HPr
C 03070 Bacterial secretion system [PATH:upa03070]
D UPA3_0507 putative lipoprotein K12257 secDF; SecD/SecF fusion protein
D UPA3_0619 preprotein translocase, SecE subunit family K03073 secE; preprotein translocase subunit SecE
D UPA3_0055 conserved hypothetical protein K03075 secG; preprotein translocase subunit SecG
D UPA3_0258 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D UPA3_0642 membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D UPA3_0125 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D UPA3_0147 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D UPA3_0092 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:upa02020]
D UPA3_0204 conserved hypothetical protein K02040 pstS; phosphate transport system substrate-binding protein
D UPA3_0001 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:upa02024]
D UPA3_0230 amino acid antiporter K20265 gadC; glutamate:GABA antiporter
D UPA3_0595 bacterial extracellular solute-binding protein, family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D UPA3_0600 oligopeptide transport system permease protein K15581 oppB; oligopeptide transport system permease protein
D UPA3_0599 oligopeptide transport system permease protein K15582 oppC; oligopeptide transport system permease protein
D UPA3_0598 oligopeptide transport system permease protein K15583 oppD; oligopeptide transport system ATP-binding protein
D UPA3_0597 oligopeptide transport system permease protein K10823 oppF; oligopeptide transport system ATP-binding protein
D UPA3_0642 membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D UPA3_0507 putative lipoprotein K12257 secDF; SecD/SecF fusion protein
D UPA3_0619 preprotein translocase, SecE subunit family K03073 secE; preprotein translocase subunit SecE
D UPA3_0055 conserved hypothetical protein K03075 secG; preprotein translocase subunit SecG
D UPA3_0258 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D UPA3_0125 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D UPA3_0147 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D UPA3_0092 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
C 02040 Flagellar assembly
D UPA3_0365 RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D UPA3_0191 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance
D UPA3_0595 bacterial extracellular solute-binding protein, family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D UPA3_0600 oligopeptide transport system permease protein K15581 oppB; oligopeptide transport system permease protein
D UPA3_0599 oligopeptide transport system permease protein K15582 oppC; oligopeptide transport system permease protein
D UPA3_0598 oligopeptide transport system permease protein K15583 oppD; oligopeptide transport system ATP-binding protein
D UPA3_0597 oligopeptide transport system permease protein K10823 oppF; oligopeptide transport system ATP-binding protein
C 01502 Vancomycin resistance
C 01503 Cationic antimicrobial peptide (CAMP) resistance
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:upa01000]
C 01001 Protein kinases [BR:upa01001]
D UPA3_0223 serine/threonine kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
C 01009 Protein phosphatases and associated proteins [BR:upa01009]
D UPA3_0192 phosphofructokinase family protein K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D UPA3_0222 protein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
C 01002 Peptidases and inhibitors [BR:upa01002]
D UPA3_0329 conserved hypothetical protein K03101 lspA; signal peptidase II [EC:3.4.23.36]
D UPA3_0064 pepF1; oligoendopeptidase F K08602 pepF; oligoendopeptidase F [EC:3.4.24.-]
D UPA3_0558 pepF2; oligoendopeptidase F K08602 pepF; oligoendopeptidase F [EC:3.4.24.-]
D UPA3_0537 cytosol aminopeptidase family protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D UPA3_0260 map; methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D UPA3_0570 creatinase/peptidase, M24 family protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D UPA3_0108 ATP-dependent zinc metallopeptidase - cell division protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D UPA3_0364 lon; ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
C 01003 Glycosyltransferases
C 01005 Lipopolysaccharide biosynthesis proteins
C 01011 Peptidoglycan biosynthesis and degradation proteins
C 01004 Lipid biosynthesis proteins [BR:upa01004]
D UPA3_0212 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D UPA3_0421 putative membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D UPA3_0360 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases
C 01007 Amino acid related enzymes [BR:upa01007]
D UPA3_0639 gltX; glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D UPA3_0123 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D UPA3_0182 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D UPA3_0129 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D UPA3_0288 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D UPA3_0203 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D UPA3_0427 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D UPA3_0275 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D UPA3_0387 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D UPA3_0061 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D UPA3_0296 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D UPA3_0381 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D UPA3_0295 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D UPA3_0511 glyS; glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D UPA3_0109 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D UPA3_0471 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D UPA3_0572 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D UPA3_0385 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D UPA3_0477 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D UPA3_0476 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:upa00194]
D UPA3_0134 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D UPA3_0135 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D UPA3_0053 ATP synthase F1, beta subunit family K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D UPA3_0136 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D UPA3_0052 ATP synthase subunit alpha 2 K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D UPA3_0138 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D UPA3_0139 ATP synthase delta subunit domain protein K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D UPA3_0140 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D UPA3_0141 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D UPA3_0142 ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D UPA3_0143 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:upa03000]
D UPA3_0565 cytosine-specific methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D UPA3_0439 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D UPA3_0401 mraZ; MraZ protein K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:upa03021]
D UPA3_0265 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D UPA3_0194 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D UPA3_0195 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D UPA3_0637 rpoE; DNA-directed RNA polymerase, delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta
D UPA3_0365 RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
D UPA3_0333 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D UPA3_0308 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D UPA3_0620 transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
D UPA3_0314 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
C 03019 Messenger RNA biogenesis [BR:upa03019]
D UPA3_0211 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D UPA3_0609 metallo-beta-lactamase superfamily protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D UPA3_0539 conserved hypothetical protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D UPA3_0084 hdod domain family K18682 rny; ribonucrease Y [EC:3.1.-.-]
D UPA3_0056 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D UPA3_0621 ATP-dependent RNA helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
D UPA3_0191 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D UPA3_0192 phosphofructokinase family protein K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D UPA3_0355 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
C 03041 Spliceosome
C 03011 Ribosome [BR:upa03011]
D UPA3_0026 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D UPA3_0245 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D UPA3_0515 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D UPA3_0256 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D UPA3_0591 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D UPA3_0561 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D UPA3_0253 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D UPA3_0615 rpsI; ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D UPA3_0238 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D UPA3_0264 rpsK; ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D UPA3_0562 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D UPA3_0263 rpsM; ribosomal protein S13p/S18e K02952 RP-S13; small subunit ribosomal protein S13
D UPA3_0252 rpsN; ribosomal protein S14p/S29e K02954 RP-S14; small subunit ribosomal protein S14
D UPA3_0210 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D UPA3_0607 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D UPA3_0248 rpsQ; ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D UPA3_0589 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D UPA3_0243 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D UPA3_0325 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D UPA3_0287 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D UPA3_0578 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D UPA3_0242 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D UPA3_0239 rplC; ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D UPA3_0240 rplD; ribosomal protein L4/L1 family K02926 RP-L4; large subunit ribosomal protein L4
D UPA3_0251 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D UPA3_0254 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D UPA3_0588 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D UPA3_0010 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D UPA3_0579 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D UPA3_0011 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D UPA3_0616 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D UPA3_0249 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D UPA3_0257 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D UPA3_0246 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D UPA3_0266 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D UPA3_0255 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D UPA3_0605 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D UPA3_0237 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D UPA3_0219 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D UPA3_0244 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D UPA3_0241 rplW; ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D UPA3_0250 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D UPA3_0217 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D UPA3_0216 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D UPA3_0247 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D UPA3_0002 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D UPA3_0349 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D UPA3_0571 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D UPA3_0644 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D UPA3_0236 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D UPA3_0262 rpmJ; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D UPA3_0118 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D UPA3_0117 small subunit ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D UPA3_0312 small subunit ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
C 03009 Ribosome biogenesis [BR:upa03009]
D UPA3_0211 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D UPA3_0509 era; GTP-binding protein Era K03595 era; GTPase
D UPA3_0480 GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
D UPA3_0333 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D UPA3_0308 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D UPA3_0620 transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
D UPA3_0641 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D UPA3_0309 conserved hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D UPA3_0039 gidB; methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D UPA3_0402 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D UPA3_0201 conserved hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D UPA3_0456 rrmJ; ribosomal RNA large subunit methyltransferase J K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D UPA3_0130 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D UPA3_0187 conserved hypothetical protein TIGR00246 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D UPA3_0221 conserved hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D UPA3_0116 pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D UPA3_0328 pseudouridylate synthase, 23S RNA-specific K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D UPA3_0326 N-acetyltransferase complex, probable ribosomal protein-alanine-acetyltransferase subunit K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D UPA3_0386 conserved hypothetical protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D UPA3_0621 ATP-dependent RNA helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
D UPA3_0224 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D UPA3_0399 GTP-binding protein EngA K03977 engA; GTPase
D UPA3_0632 GTPase K14540 rbgA; ribosome biogenesis GTPase A
D UPA3_0487 conserved hypothetical protein K06948 yqeH; 30S ribosome assembly GTPase
D UPA3_0005 conserved hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D UPA3_0293 ppGpp 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D UPA3_0336 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D UPA3_0079 yaaA; S4 domain protein YaaA K14761 rlbA; ribosome-associated protein
D UPA3_0508 conserved hypothetical protein TIGR00043 K07042 ybeY; probable rRNA maturation factor
D UPA3_0635 ychF; GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
C 03016 Transfer RNA biogenesis [BR:upa03016]
D UPA3_0471 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D UPA3_0427 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D UPA3_0387 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D UPA3_0203 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D UPA3_0288 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D UPA3_0061 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D UPA3_0296 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D UPA3_0385 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D UPA3_0381 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D UPA3_0511 glyS; glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D UPA3_0572 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D UPA3_0109 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D UPA3_0129 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D UPA3_0275 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D UPA3_0295 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D UPA3_0477 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D UPA3_0476 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D UPA3_0123 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D UPA3_0182 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D UPA3_0281 histidine triad protein HIT K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D UPA3_0277 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D UPA3_0573 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D UPA3_0370 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D UPA3_0005 conserved hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D UPA3_0018 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D UPA3_0038 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D UPA3_0643 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D UPA3_0639 gltX; glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D UPA3_0606 trmD; tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D UPA3_0366 conserved hypothetical protein K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217]
D UPA3_0276 rRNA methylase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D UPA3_0320 dna methylase K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D UPA3_0342 rRNA methylase K03437 spoU; RNA methyltransferase, TrmH family
D UPA3_0418 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D UPA3_0436 thiI; thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D UPA3_0076 tilS; tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D UPA3_0327 glycoprotease family K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D UPA3_0056 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
C 03012 Translation factors [BR:upa03012]
D UPA3_0335 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D UPA3_0235 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D UPA3_0545 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts
D UPA3_0559 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D UPA3_0560 fusA; translation elongation factor G K02355 fusA; elongation factor G
D UPA3_0003 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D UPA3_0543 frr; ribosome recycling factor K02838 frr; ribosome recycling factor
D UPA3_0004 methyltransferase, HemK family K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D UPA3_0077 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D UPA3_0261 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D UPA3_0306 efp; translation elongation factor P K02356 efp; elongation factor P
C 03110 Chaperones and folding catalysts [BR:upa03110]
D UPA3_0407 chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D UPA3_0355 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D UPA3_0424 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D UPA3_0423 grpE; co-chaperone GrpE K03687 GRPE; molecular chaperone GrpE
D UPA3_0108 ATP-dependent zinc metallopeptidase - cell division protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D UPA3_0143 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D UPA3_0629 thioredoxin K03671 TXN; thioredoxin
C 04131 Membrane trafficking [BR:upa04131]
D UPA3_0193 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
C 04121 Ubiquitin system
C 03051 Proteasome
C 03032 DNA replication proteins [BR:upa03032]
D UPA3_0565 cytosine-specific methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D UPA3_0292 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D UPA3_0001 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D UPA3_0587 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D UPA3_0512 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D UPA3_0323 conserved hypothetical protein K03346 dnaB; replication initiation and membrane attachment protein
D UPA3_0590 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D UPA3_0433 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D UPA3_0393 polC; DNA polymerase III, alpha subunit, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D UPA3_0078 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D UPA3_0343 DNA polymerase III, delta subunit superfamily K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D UPA3_0019 DNA polymerase III delta subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D UPA3_0087 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D UPA3_0413 rnhC; ribonuclease HIII K03471 rnhC; ribonuclease HIII [EC:3.1.26.4]
D UPA3_0127 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D UPA3_0081 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D UPA3_0080 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D UPA3_0486 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D UPA3_0485 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D UPA3_0630 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:upa03036]
D UPA3_0565 cytosine-specific methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D UPA3_0211 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D UPA3_0292 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D UPA3_0001 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D UPA3_0146 p115 protein K03529 smc; chromosome segregation protein
D UPA3_0361 scpA; segregation and condensation protein A K05896 scpA; segregation and condensation protein A
D UPA3_0362 segregation and condensation protein B K06024 scpB; segregation and condensation protein B
D UPA3_0538 cell division protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D UPA3_0486 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D UPA3_0485 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D UPA3_0038 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D UPA3_0039 gidB; methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D UPA3_0229 tyrosine recombinase XerC K04763 xerD; integrase/recombinase XerD
D UPA3_0566 integrase-recombinase protein K04763 xerD; integrase/recombinase XerD
D UPA3_0153 integrase-recombinase protein K04763 xerD; integrase/recombinase XerD
D UPA3_0274 ATP/GTP-binding protein K03978 engB; GTP-binding protein
D UPA3_0072 conserved hypothetical protein K09762 whiA; cell division protein WhiA
C 03400 DNA repair and recombination proteins [BR:upa03400]
D UPA3_0585 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D UPA3_0431 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D UPA3_0321 apurinic endonuclease (APN1) K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D UPA3_0127 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D UPA3_0105 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D UPA3_0126 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D UPA3_0397 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
D UPA3_0527 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D UPA3_0194 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D UPA3_0195 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D UPA3_0265 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D UPA3_0637 rpoE; DNA-directed RNA polymerase, delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta
D UPA3_0433 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D UPA3_0393 polC; DNA polymerase III, alpha subunit, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D UPA3_0078 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D UPA3_0343 DNA polymerase III, delta subunit superfamily K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D UPA3_0019 DNA polymerase III delta subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D UPA3_0087 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D UPA3_0590 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D UPA3_0083 recA; protein RecA K03553 recA; recombination protein RecA
D UPA3_0468 holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D UPA3_0467 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D UPA3_0493 putative lipoprotein K03546 sbcC; DNA repair protein SbcC/Rad50
D UPA3_0351 conserved hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50
D UPA3_0037 divergent AAA domain family K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D UPA3_0510 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D UPA3_0089 recombination protein RecR K06187 recR; recombination protein RecR
D UPA3_0304 recombination protein U K03700 recU; recombination protein U
D UPA3_0081 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D UPA3_0080 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D UPA3_0630 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D UPA3_0292 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D UPA3_0457 DNA polymerase IV (Pol IV) K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D UPA3_0435 DHH family protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
C 03029 Mitochondrial biogenesis [BR:upa03029]
D UPA3_0335 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D UPA3_0235 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D UPA3_0545 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts
D UPA3_0559 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D UPA3_0560 fusA; translation elongation factor G K02355 fusA; elongation factor G
D UPA3_0509 era; GTP-binding protein Era K03595 era; GTPase
D UPA3_0123 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D UPA3_0387 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D UPA3_0296 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D UPA3_0511 glyS; glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D UPA3_0288 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D UPA3_0582 glutamyl-tRNA(Gln)/aspartyl-tRNA(Asn) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D UPA3_0581 glutamyl-tRNA(Gln)/aspartyl-tRNA(Asn) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D UPA3_0590 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D UPA3_0355 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D UPA3_0423 grpE; co-chaperone GrpE K03687 GRPE; molecular chaperone GrpE
D UPA3_0424 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D UPA3_0642 membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:upa02000]
D UPA3_0059 transport ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D UPA3_0058 transport ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D UPA3_0113 putative lipoprotein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D UPA3_0112 spermidine/putrescine transport system permease K11070 potC; spermidine/putrescine transport system permease protein
D UPA3_0111 spermidine/putrescine transport system permease K11071 potB; spermidine/putrescine transport system permease protein
D UPA3_0110 spermidine/putrescine transport ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D UPA3_0016 putative membrane protein K07335 bmpA; basic membrane protein A and related proteins
D UPA3_0498 putative membrane protein K07335 bmpA; basic membrane protein A and related proteins
D UPA3_0234 putative membrane protein K07335 bmpA; basic membrane protein A and related proteins
D UPA3_0012 putative membrane protein K07335 bmpA; basic membrane protein A and related proteins
D UPA3_0014 ribose/galactose ABC transporter K23535 nupB; general nucleoside transport system permease protein
D UPA3_0013 ribose/galactose ABC transporter K23536 nupC; general nucleoside transport system permease protein
D UPA3_0015 methylgalactoside permease ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D UPA3_0204 conserved hypothetical protein K02040 pstS; phosphate transport system substrate-binding protein
D UPA3_0205 phosphate transport system permease K02037 pstC; phosphate transport system permease protein
D UPA3_0206 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D UPA3_0595 bacterial extracellular solute-binding protein, family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D UPA3_0600 oligopeptide transport system permease protein K15581 oppB; oligopeptide transport system permease protein
D UPA3_0599 oligopeptide transport system permease protein K15582 oppC; oligopeptide transport system permease protein
D UPA3_0598 oligopeptide transport system permease protein K15583 oppD; oligopeptide transport system ATP-binding protein
D UPA3_0597 oligopeptide transport system permease protein K10823 oppF; oligopeptide transport system ATP-binding protein
D UPA3_0552 hypothetical ferrichrome ABC transporter K02015 ABC.FEV.P; iron complex transport system permease protein
D UPA3_0553 ferric anguibactin transport system permerase protein K02015 ABC.FEV.P; iron complex transport system permease protein
D UPA3_0373 citrate-dependent iron transport, membrane-bound protein K02015 ABC.FEV.P; iron complex transport system permease protein
D UPA3_0374 ferrichrome ABC transporter K02015 ABC.FEV.P; iron complex transport system permease protein
D UPA3_0415 hemin permease K02015 ABC.FEV.P; iron complex transport system permease protein
D UPA3_0416 ferrichrome ABC transporter K02015 ABC.FEV.P; iron complex transport system permease protein
D UPA3_0022 ferrichrome ABC transporter K02015 ABC.FEV.P; iron complex transport system permease protein
D UPA3_0023 ferrichrome ABC transporter K02015 ABC.FEV.P; iron complex transport system permease protein
D UPA3_0025 ferrichrome ABC transporter K02015 ABC.FEV.P; iron complex transport system permease protein
D UPA3_0069 hemin transport system permease K02015 ABC.FEV.P; iron complex transport system permease protein
D UPA3_0455 ferrichrome transport ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D UPA3_0068 iron(III) dicitrate transport ATP-binding protein fecE K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D UPA3_0575 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein
D UPA3_0577 cobalt import ATP-binding protein CbiO 2 K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D UPA3_0576 cobalt import ATP-binding protein CbiO 1 K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D UPA3_0093 putative membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D UPA3_0408 putative membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D UPA3_0094 ABC transporter K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D UPA3_0332 efflux ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D UPA3_0124 ABC Transporter K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D UPA3_0626 phosphohistidinoprotein-hexose phosphotransferase K02784 ptsH; phosphocarrier protein HPr
D UPA3_0612 potassium channel protein K10716 kch; voltage-gated potassium channel
D UPA3_0225 ammonium transporter K03320 amt; ammonium transporter, Amt family
D UPA3_0226 ammonium transporter K03320 amt; ammonium transporter, Amt family
D UPA3_0009 mgtE; magnesium transporter K06213 mgtE; magnesium transporter
D UPA3_0071 hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family
D UPA3_0500 conserved hypothetical protein K21449 ata; trimeric autotransporter adhesin
D UPA3_0230 amino acid antiporter K20265 gadC; glutamate:GABA antiporter
D UPA3_0040 PQ loop repeat family K15383 K15383; MtN3 and saliva related transmembrane protein
D UPA3_0041 conserved hypothetical protein K15383 K15383; MtN3 and saliva related transmembrane protein
D UPA3_0166 conserved hypothetical protein K05770 TSPO; translocator protein
C 02044 Secretion system [BR:upa02044]
D UPA3_0400 ComEC/Rec2 family protein K02238 comEC; competence protein ComEC
D UPA3_0125 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D UPA3_0507 putative lipoprotein K12257 secDF; SecD/SecF fusion protein
D UPA3_0619 preprotein translocase, SecE subunit family K03073 secE; preprotein translocase subunit SecE
D UPA3_0055 conserved hypothetical protein K03075 secG; preprotein translocase subunit SecG
D UPA3_0258 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D UPA3_0092 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D UPA3_0147 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D UPA3_0642 membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
C 02042 Bacterial toxins [BR:upa02042]
D UPA3_0071 hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system
C 02035 Bacterial motility proteins
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins
C 04147 Exosome [BR:upa04147]
D UPA3_0191 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D UPA3_0289 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D UPA3_0193 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D UPA3_0355 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D UPA3_0559 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D UPA3_0281 histidine triad protein HIT K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D UPA3_0259 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D UPA3_0506 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D UPA3_0188 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 02048 Prokaryotic defense system [BR:upa02048]
D UPA3_0098 hsdR; type I site-specific deoxyribonuclease, HsdR K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D UPA3_0102 type I restriction modification DNA specificity family protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D UPA3_0101 hsdM; type I restriction-modification system, M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D UPA3_0036 conserved hypothetical protein K07317 K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D UPA3_0565 cytosine-specific methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D UPA3_0494 type III restriction enzyme, res subunit family K01156 res; type III restriction enzyme [EC:3.1.21.5]
D UPA3_0495 DNA methylase K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D UPA3_0486 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D UPA3_0485 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:upa04090]
C 01504 Antimicrobial resistance genes
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:upa03100]
D UPA3_0151 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D UPA3_0531 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D UPA3_0524 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D UPA3_0530 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D UPA3_0518 tRNA-Phe K14221 tRNA-Asp; tRNA Asp
D UPA3_0525 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D UPA3_0316 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D UPA3_0550 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D UPA3_0319 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D UPA3_0121 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D UPA3_0278 tRNA-His K14226 tRNA-His; tRNA His
D UPA3_0150 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D UPA3_0318 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D UPA3_0546 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D UPA3_0430 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D UPA3_0317 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D UPA3_0547 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D UPA3_0519 tRNA-Met K14230 tRNA-Met; tRNA Met
D UPA3_0521 tRNA-Met K14230 tRNA-Met; tRNA Met
D UPA3_0522 tRNA-Met K14230 tRNA-Met; tRNA Met
D UPA3_0523 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D UPA3_0520 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D UPA3_0628 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D UPA3_0549 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D UPA3_0569 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D UPA3_0315 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D UPA3_0536 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D UPA3_0117 small subunit ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D UPA3_0312 small subunit ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D UPA3_0118 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D UPA3_0645 srpB; bacterial signal recognition particle RNA K01983 ffs; SRP RNA
D UPA3_0647 putative tmRNA K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D UPA3_0298 msrA; methionine-S-sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D UPA3_0446 urease K02217 ftnA; ferritin [EC:1.16.3.2]
D UPA3_0074 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D UPA3_0213 DAK2 domain protein K07030 fakA; fatty acid kinase [EC:2.7.2.18]
D UPA3_0075 hprK; HPr(Ser) kinase/phosphatase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-]
D UPA3_0017 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D UPA3_0200 primase homolog K05985 rnmV; ribonuclease M5 [EC:3.1.26.8]
D UPA3_0484 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D UPA3_0272 cation-transporting P-type ATPase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
C 99981 Carbohydrate metabolism
C 99982 Energy metabolism
D UPA3_0472 SUF system FeS assembly protein, NifU family K04488 iscU; nitrogen fixation protein NifU and related proteins
C 99983 Lipid metabolism
D UPA3_0197 conserved hypothetical protein K25232 fakB; fatty acid kinase fatty acid binding subunit
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
C 99986 Glycan metabolism
D UPA3_0469 putative membrane protein K07027 K07027; glycosyltransferase 2 family protein
C 99987 Cofactor metabolism
C 99988 Secondary metabolism
C 99999 Others
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D UPA3_0183 conserved hypothetical protein K16509 spxA; regulatory protein spx
D UPA3_0029 S1 RNA binding domain protein K06959 tex; protein Tex
C 99974 Translation
C 99975 Protein processing
D UPA3_0363 tig; trigger factor K03545 tig; trigger factor
D UPA3_0450 urease accessory protein UreE K03187 ureE; urease accessory protein
D UPA3_0449 urease accessory protein UreF K03188 ureF; urease accessory protein
D UPA3_0448 ureG; urease accessory protein UreG K03189 ureG; urease accessory protein
D UPA3_0447 ureD; urease accessory protein UreD K03190 ureD; urease accessory protein
D UPA3_0057 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
C 99976 Replication and repair
D UPA3_0176 phage terminase, large subunit, pbsx family K06909 xtmB; phage terminase large subunit
D UPA3_0202 ATPase, AAA family K07478 ycaJ; putative ATPase
D UPA3_0420 integrase-recombinase protein K07493 K07493; putative transposase
D UPA3_0388 integrase-recombinase protein K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D UPA3_0088 conserved hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D UPA3_0618 amino acid transporter protein K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
C 99978 Cell growth
C 99993 Cell motility
C 99995 Signaling proteins
C 99992 Structural proteins
C 99994 Others
D UPA3_0207 PhoU family K02039 phoU; phosphate transport system protein
B
B 09194 Poorly characterized
C 99996 General function prediction only
D UPA3_0198 putative tRNA binding domain protein K06878 K06878; tRNA-binding protein
D UPA3_0340 LemA family K03744 lemA; LemA protein
C 99997 Function unknown
D UPA3_0638 HD domain protein K06885 K06885; uncharacterized protein
D UPA3_0285 putative membrane protein K07149 K07149; uncharacterized protein
D UPA3_0148 YlxM family protein K09787 K09787; uncharacterized protein
D UPA3_0273 conserved hypothetical protein K09976 K09976; uncharacterized protein
D UPA3_0614 conserved hypothetical protein K01163 K01163; uncharacterized protein
D UPA3_0218 conserved hypothetical protein K07584 ysxB; uncharacterized protein
D UPA3_0441 conserved hypothetical protein K07586 ygaC; uncharacterized protein
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 3, 2024