+E Transcription factors KO #

  Transcription Factors - Usitatibacter palustris

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D DSM104440_00043 rhaS; HTH-type transcriptional activator RhaS K07506 K07506; AraC family transcriptional regulator D DSM104440_00213 alkA_1; putative bifunctional transcriptional activator/DNA repair enzyme AlkA K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] C LysR family D DSM104440_00790 gcvA_1; Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D DSM104440_00862 gcvA_2; Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D DSM104440_00903 gcvA_3; Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D DSM104440_02697 metR; HTH-type transcriptional regulator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D DSM104440_01543 oxyR; Hydrogen peroxide sensor K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D DSM104440_02415 cysB; HTH-type transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D DSM104440_00221 cmpR_1; HTH-type transcriptional activator CmpR K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator D DSM104440_00587 hypothetical protein K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D DSM104440_02328 cmpR_3; HTH-type transcriptional activator CmpR K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator C DeoR family C LacI family D DSM104440_00854 ccpA_1; Catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor D DSM104440_01433 ccpA_2; Catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor D DSM104440_02058 ccpA_4; Catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor D DSM104440_02096 rbsR; Ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D DSM104440_03496 gntR; HTH-type transcriptional regulator GntR K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor C GntR family D DSM104440_03574 nagR; HTH-type transcriptional repressor NagR K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D DSM104440_03461 yurK_2; putative HTH-type transcriptional regulator YurK K03710 K03710; GntR family transcriptional regulator D DSM104440_01706 yurK_1; putative HTH-type transcriptional regulator YurK K03710 K03710; GntR family transcriptional regulator D DSM104440_00797 lutR; HTH-type transcriptional regulator LutR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex C TetR/AcrR family D DSM104440_02675 ttgR; HTH-type transcriptional regulator TtgR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D DSM104440_01256 slmA; Nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator D DSM104440_01544 hypothetical protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D DSM104440_01673 hypothetical protein K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity C Lrp/AsnC family D DSM104440_02994 lrp; Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family C MarR family C MerR family D DSM104440_00530 carA_1; HTH-type transcriptional repressor CarA K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator C Fur family D DSM104440_02937 fur; Ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator C IclR family D DSM104440_01822 kdgR; Pectin degradation repressor protein KdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor C CRP/FNR family D DSM104440_03065 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D DSM104440_03793 crp_2; cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D DSM104440_00179 vfr; Cyclic AMP receptor-like protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D DSM104440_00558 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D DSM104440_00702 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D DSM104440_00848 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D DSM104440_00983 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D DSM104440_02084 Cyclic nucleotide-gated potassium channel K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D DSM104440_02335 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D DSM104440_01030 fnr_1; Fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D DSM104440_01043 fnr_2; Fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D DSM104440_01057 crp_1; CRP-like cAMP-activated global transcriptional regulator K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator C Rrf2 family D DSM104440_01197 iscR; HTH-type transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D DSM104440_01066 nsrR; HTH-type transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D DSM104440_02917 hypothetical protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor C XRE family D DSM104440_01158 ramB; HTH-type transcriptional regulator RamB K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator C PadR family C Other families D DSM104440_00611 birA; Bifunctional ligase/repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D DSM104440_00190 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D DSM104440_00387 hypothetical protein K02019 modE; molybdate transport system regulatory protein D DSM104440_03593 hypothetical protein K07726 K07726; putative transcriptional regulator D DSM104440_00115 higA-2; Antitoxin HigA-2 K07726 K07726; putative transcriptional regulator D DSM104440_00874 hypothetical protein K07727 K07727; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D DSM104440_02940 putA; Bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D DSM104440_00891 bolA; DNA-binding transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D DSM104440_03804 parB; putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D DSM104440_01510 hrcA; Heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D DSM104440_01617 rnk; Regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase D DSM104440_03714 pyrR; Bifunctional protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D DSM104440_00555 paiB; Protease synthase and sporulation protein PAI 2 K07734 paiB; transcriptional regulator D DSM104440_03716 hypothetical protein K07735 algH; putative transcriptional regulator D DSM104440_02698 hypothetical protein K07735 algH; putative transcriptional regulator D DSM104440_01025 dksA_1; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor D DSM104440_01800 dksA_2; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor D DSM104440_01529 nrdR; Transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR D DSM104440_00634 mraZ; Transcriptional regulator MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024 #
Classification taken and modified from TRANSFAC 7.0