+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Uncinocarpus reesii
%
!
AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E UREG_01206 hypothetical protein K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E UREG_01100 cell division control protein 2 K04563 CDC28; cyclin-dependent kinase [EC:2.7.11.22]
E UREG_07806 serine/threonine-protein kinase crk1 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E UREG_00757 mRNA capping enzyme alpha subunit K00987 CEG1; mRNA guanylyltransferase [EC:2.7.7.50]
D Cap binding complex
E UREG_03140 hypothetical protein K12882 NCBP1; nuclear cap-binding protein subunit 1
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E UREG_03994 similar to cleavage and polyadenylation specific factor 5 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
D Pre-mRNA cleavage factor IIm (CFIIm)
E UREG_05194 hypothetical protein K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E UREG_03204 hypothetical protein K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E UREG_01480 hypothetical protein K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E UREG_06863 hypothetical protein K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E UREG_02938 hypothetical protein K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E UREG_06760 similar to Cpsf4 protein K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E UREG_04614 hypothetical protein K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E UREG_05672 hypothetical protein K15541 MPE1; protein MPE1
E UREG_00817 hypothetical protein K15542 PFS2; polyadenylation factor subunit 2
E UREG_04969 similar to WD repeat protein K14962 WDR82; COMPASS component SWD2
E UREG_02332 serine/threonine-protein phosphatase PP-Z2 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E UREG_06645 serine/threonine-protein phosphatase PP1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E UREG_01699 similar to Ssu72 protein K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E UREG_00968 hypothetical protein K14407 CSTF2; cleavage stimulation factor subunit 2
E UREG_07490 hypothetical protein K14408 CSTF3; cleavage stimulation factor subunit 3
E UREG_01511 hypothetical protein K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E UREG_03316 small nuclear ribonucleoprotein SM D3 K11088 SNRPD3; small nuclear ribonucleoprotein D3
E UREG_01549 hypothetical protein K11099 SNRPG; small nuclear ribonucleoprotein G
E UREG_06863 hypothetical protein K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E UREG_02938 hypothetical protein K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E UREG_00968 hypothetical protein K14407 CSTF2; cleavage stimulation factor subunit 2
E UREG_01511 hypothetical protein K06100 SYMPK; symplekin
D DRB sensitivity inducing factor (DSIF) complex
E UREG_02728 Spt5p protein K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E UREG_06255 hypothetical protein K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
D Poly(A) addition factors
E UREG_07065 Poly(A) polymerase PAPalpha K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
D Negative regulators of mRNA 3' end processing
C Other processing factors
D UREG_04149 similar to KIN17 protein K13102 KIN; DNA/RNA-binding protein KIN17
D UREG_01381 hypothetical protein K27103 SRRT; serrate RNA effector molecule
D UREG_01048 hypothetical protein K23039 NAB2; nuclear polyadenylated RNA-binding protein NAB2
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E UREG_01752 RNA-binding protein 8A K12876 RBM8A; RNA-binding protein 8A
E UREG_05915 mago nashi protein K12877 MAGOH; protein mago nashi
E UREG_04702 hypothetical protein K12881 THOC4; THO complex subunit 4
E UREG_05971 ATP-dependent RNA helicase SUB2 K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E UREG_03967 eukaryotic initiation factor 4A-12 K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E UREG_07423 hypothetical protein K25178 CCDC174; coiled-coil domain-containing protein 174
E UREG_02956 hypothetical protein K14324 SAP18; histone deacetylase complex subunit SAP18
D TREX complex
E UREG_02634 hypothetical protein K12878 THOC1; THO complex subunit 1
E UREG_04310 hypothetical protein K12879 THOC2; THO complex subunit 2
E UREG_03484 hypothetical protein K12880 THOC3; THO complex subunit 3
E UREG_04702 hypothetical protein K12881 THOC4; THO complex subunit 4
E UREG_02274 hypothetical protein K13174 THOC5; THO complex subunit 5
D TREX-2 complex
E UREG_02980 hypothetical protein K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E UREG_03419 hypothetical protein K10881 SHFM1; 26 proteasome complex subunit DSS1
E UREG_04208 hypothetical protein K23719 SAC3; nuclear mRNA export protein SAC3
D Nuclear pore complex
E UREG_05393 hypothetical protein K09291 TPR; nucleoprotein TPR
E UREG_05729 Poly(A)+ RNA export protein K14298 RAE1; mRNA export factor
E UREG_05643 protein transport protein SEC13 K14004 SEC13; protein transport protein SEC13
E UREG_03389 hypothetical protein K14308 NUP54; nuclear pore complex protein Nup54
E UREG_01746 hypothetical protein K14306 NUP62; nuclear pore complex protein Nup62
E UREG_02584 hypothetical protein K14309 NUP93; nuclear pore complex protein Nup93
E UREG_05079 hypothetical protein K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E UREG_05924 hypothetical protein K14301 NUP107; nuclear pore complex protein Nup107
E UREG_05688 hypothetical protein K14300 NUP133; nuclear pore complex protein Nup133
E UREG_03651 hypothetical protein K14311 NUP188; nuclear pore complex protein Nup188
E UREG_02430 hypothetical protein K14312 NUP155; nuclear pore complex protein Nup155
E UREG_03417 hypothetical protein K14303 NUP160; nuclear pore complex protein Nup160
E UREG_04999 hypothetical protein K14310 NUP205; nuclear pore complex protein Nup205
E UREG_04608 hypothetical protein K14307 NUPL1; nucleoporin p58/p45
E UREG_05587 hypothetical protein K14315 NDC1; nucleoporin NDC1
E UREG_02457 hypothetical protein K14299 SEH1; nucleoporin SEH1
E UREG_01017 hypothetical protein K18715 NUP159; nucleoporin NUP159
E UREG_06190 hypothetical protein K18716 NUP42; nucleoporin NUP42
E UREG_00798 hypothetical protein K18719 NUP82; nucleoporin NUP82
E UREG_05886 hypothetical protein K18723 GLE1; nucleoporin GLE1
E UREG_06667 hypothetical protein K14284 NXF; nuclear RNA export factor
E UREG_03839 hypothetical protein K18724 POM34; nucleoporin POM34
E UREG_06987 hypothetical protein K18725 POM152; nucleoporin POM152
D Ran-mediated transport factors
E UREG_03487 GTP-binding nuclear protein GSP1/Ran K07936 RAN; GTP-binding nuclear protein Ran
E UREG_07060 hypothetical protein K18726 FAF2; FAS-associated factor 2
E UREG_04902 cell division cycle protein 48 K13525 VCP; transitional endoplasmic reticulum ATPase
E UREG_05694 exportin-1 K14290 XPO1; exportin-1
E UREG_01420 hypothetical protein K14319 RANGAP1; Ran GTPase-activating protein 1
E UREG_05537 hypothetical protein K14651 TAF15; transcription initiation factor TFIID subunit 15
D eIF4F and regulatory proteins
E UREG_02367 eukaryotic translation initiation factor 4E-1 K03259 EIF4E; translation initiation factor 4E
E UREG_03894 eukaryotic translation initiation factor 4E type 3 K03259 EIF4E; translation initiation factor 4E
E UREG_07691 eukaryotic initiation factor 4A-6 K03257 EIF4A; translation initiation factor 4A
E UREG_02176 hypothetical protein K03260 EIF4G; translation initiation factor 4G
E UREG_04821 hypothetical protein K03258 EIF4B; translation initiation factor 4B
E UREG_00407 similar to RNA helicase K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E UREG_04759 ATP-dependent RNA helicase ded1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E UREG_06488 hypothetical protein K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E UREG_06557 polyadenylate-binding protein K13126 PABPC; polyadenylate-binding protein
E UREG_02805 potential translation-regulating helicase K18664 SLH1; antiviral helicase SLH1 [EC:5.6.2.6]
D APOBEC1-ACF complex
D Other transport factors
E UREG_01050 hypothetical protein K14294 WIBG; partner of Y14 and mago
E UREG_00938 similar to Msi1h protein K14411 MSI; RNA-binding protein Musashi
E UREG_01161 TEF1 protein K14416 HBS1; elongation factor 1 alpha-like protein
E UREG_01793 probable translation factor pelota K06965 PELO; protein pelota
E UREG_05781 polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E UREG_00283 similar to RNA helicase K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E UREG_05246 pre-mRNA splicing factor syf-1 K12867 SYF1; pre-mRNA-splicing factor SYF1
E UREG_01854 hypothetical protein K18732 SARNP; SAP domain-containing ribonucleoprotein
E UREG_02581 hypothetical protein K11493 RCC1; regulator of chromosome condensation
E UREG_02650 hypothetical protein K23802 LENG8; SAC3 family protein LENG8/THP3
C Surveillance factors
D Surveillance complex
E UREG_04029 peptide chain release factor eRF/aRF, subunit 1 K03265 ETF1; peptide chain release factor subunit 1
E UREG_01303 eukaryotic peptide chain release factor GTP-binding subunit K03267 ERF3; peptide chain release factor subunit 3
E UREG_03648 ATP-dependent helicase NAM7 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E UREG_06382 hypothetical protein K14327 UPF2; regulator of nonsense transcripts 2
E UREG_04730 hypothetical protein K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E UREG_04602 serine/threonine-protein phosphatase PP2A catalytic subunit K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E UREG_02031 protein phosphatase PP2A regulatory subunit A K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E UREG_02693 protein phosphatase PP2A regulatory subunit B K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E UREG_03954 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E UREG_06488 hypothetical protein K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E UREG_04989 hypothetical protein K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E UREG_03414 hypothetical protein K14844 PUF6; pumilio homology domain family member 6
E UREG_01012 hypothetical protein K18738 HEK; heterogeneous nuclear rnp K-like protein
E UREG_06886 similar to cytoplasm protein K18738 HEK; heterogeneous nuclear rnp K-like protein
E UREG_04039 MYO2 protein K10357 MYO5; myosin V
E UREG_03580 hypothetical protein K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
D Trans-acting binding proteins
E UREG_05098 hypothetical protein K13210 FUBP; far upstream element-binding protein
E UREG_07557 translation elongation factor EF-1, subunit alpha K03231 EEF1A; elongation factor 1-alpha
E UREG_03068 hypothetical protein K03233 EEF1G; elongation factor 1-gamma
D Other mRNA localization factors
E UREG_05887 hypothetical protein K18748 SSD1; protein SSD1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E UREG_03913 hypothetical protein K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E UREG_02898 hypothetical protein K11593 ELF2C; eukaryotic translation initiation factor 2C
E UREG_07489 hypothetical protein K11593 ELF2C; eukaryotic translation initiation factor 2C
E UREG_02367 eukaryotic translation initiation factor 4E-1 K03259 EIF4E; translation initiation factor 4E
E UREG_03894 eukaryotic translation initiation factor 4E type 3 K03259 EIF4E; translation initiation factor 4E
E UREG_03648 ATP-dependent helicase NAM7 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E UREG_00407 similar to RNA helicase K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E UREG_04759 ATP-dependent RNA helicase ded1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E UREG_06980 similar to ATP-dependent RNA helicase K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E UREG_05949 hypothetical protein K18749 LSM14; protein LSM14
E UREG_06146 hypothetical protein K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E UREG_02882 hypothetical protein K18752 TNPO1; transportin-1
E UREG_03689 vacuolar ATP synthase 16 kDa proteolipid subunit 2 K04345 PKA; protein kinase A [EC:2.7.11.11]
E UREG_06328 cAMP-dependent protein kinase type 2 K04345 PKA; protein kinase A [EC:2.7.11.11]
E UREG_03462 hypothetical protein K18757 LARP1; la-related protein 1
D P-body specific factors
E UREG_04975 hypothetical protein K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E UREG_04988 hypothetical protein K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E UREG_05838 similar to Lsm6 protein K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E UREG_07058 hypothetical protein K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E UREG_05857 hypothetical protein K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E UREG_04039 MYO2 protein K10357 MYO5; myosin V
E UREG_01340 tubulin alpha-1 chain K07374 TUBA; tubulin alpha
E UREG_04085 tubulin alpha chain K07374 TUBA; tubulin alpha
E UREG_07356 hypothetical protein K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E UREG_02263 hypothetical protein K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E UREG_06158 hypothetical protein K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E UREG_01281 hypothetical protein K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E UREG_00611 hypothetical protein K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E UREG_04257 CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E UREG_01170 hypothetical protein K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E UREG_02824 hypothetical protein K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E UREG_00711 hypothetical protein K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E UREG_04944 hypothetical protein K12615 EDC3; enhancer of mRNA-decapping protein 3
E UREG_06382 hypothetical protein K14327 UPF2; regulator of nonsense transcripts 2
E UREG_04730 hypothetical protein K14328 UPF3; regulator of nonsense transcripts 3
E UREG_01562 DNA-directed RNA polymerase II 19 kDa polypeptide K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
D Stress granule specific factors
E UREG_03354 OsGRP2 protein K13201 TIA1; nucleolysin TIA-1/TIAR
E UREG_06557 polyadenylate-binding protein K13126 PABPC; polyadenylate-binding protein
E UREG_01898 hypothetical protein K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E UREG_00529 hypothetical protein K15026 EIF2A; translation initiation factor 2A
E UREG_06046 similar to eukaryotic translation initiation factor 3 K03253 EIF3B; translation initiation factor 3 subunit B
E UREG_07691 eukaryotic initiation factor 4A-6 K03257 EIF4A; translation initiation factor 4A
E UREG_03967 eukaryotic initiation factor 4A-12 K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E UREG_04821 hypothetical protein K03258 EIF4B; translation initiation factor 4B
E UREG_02176 hypothetical protein K03260 EIF4G; translation initiation factor 4G
E UREG_05165 similar to receptor of activated protein kinase C 1 K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E UREG_06667 hypothetical protein K14284 NXF; nuclear RNA export factor
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E UREG_04975 hypothetical protein K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E UREG_06980 similar to ATP-dependent RNA helicase K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E UREG_04944 hypothetical protein K12615 EDC3; enhancer of mRNA-decapping protein 3
E UREG_00711 hypothetical protein K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E UREG_04988 hypothetical protein K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E UREG_05838 similar to Lsm6 protein K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E UREG_07058 hypothetical protein K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E UREG_05857 hypothetical protein K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E UREG_03913 hypothetical protein K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E UREG_07218 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
D Other 5'-3' decay factors
E UREG_00738 hypothetical protein K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
C 3'-5' decay
D Core exosome factors
E UREG_04960 similar to exosomal core protein CSL4 K07573 CSL4; exosome complex component CSL4
E UREG_06926 hypothetical protein K03679 RRP4; exosome complex component RRP4
E UREG_06807 hypothetical protein K03681 RRP40; exosome complex component RRP40
E UREG_01704 hypothetical protein K11600 RRP41; exosome complex component RRP41
E UREG_00259 hypothetical protein K12590 RRP46; exosome complex component RRP46
E UREG_06460 hypothetical protein K12589 RRP42; exosome complex component RRP42
E UREG_00776 hypothetical protein K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E UREG_05804 mitotic control protein dis3 K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E UREG_06879 hypothetical protein K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E UREG_00477 hypothetical protein K12592 C1D; exosome complex protein LRP1
D TRAMP complex
E UREG_01623 hypothetical protein K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E UREG_05156 hypothetical protein K12597 AIR1_2; protein AIR1/2
E UREG_05592 ATP-dependent RNA helicase DOB1 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E UREG_07600 hypothetical protein K12600 SKI3; superkiller protein 3
E UREG_05711 Ski8 protein K12601 SKI8; superkiller protein 8
D Ccr4-NOT complex
E UREG_00611 hypothetical protein K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E UREG_07356 hypothetical protein K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E UREG_02263 hypothetical protein K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E UREG_06158 hypothetical protein K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E UREG_01281 hypothetical protein K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E UREG_04257 CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E UREG_05823 cell differentiation protein rcd1 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E UREG_03135 hypothetical protein K12608 CAF16; CCR4-NOT complex subunit CAF16
E UREG_06669 hypothetical protein K12609 CAF120; CCR4-NOT transcriptional complex subunit CAF120
D Pan complex
E UREG_01170 hypothetical protein K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E UREG_02824 hypothetical protein K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E UREG_04889 hypothetical protein K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E UREG_02603 hypothetical protein K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E UREG_00738 hypothetical protein K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E UREG_03495 hypothetical protein K26109 NRDE2; nuclear exosome regulator NRDE2
E UREG_06654 protein VTS1 K27407 VTS1; RNA-binding protein VTS1
C Other degradation factors
D RNases
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E UREG_04060 hypothetical protein K03685 rnc; ribonuclease III [EC:3.1.26.3]
E UREG_07405 hypothetical protein K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E UREG_02880 enolase 2 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E UREG_07866 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E UREG_02793 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E UREG_01663 chaperone DnaK K04043 dnaK; molecular chaperone DnaK
E UREG_04105 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E UREG_06926 hypothetical protein K03679 RRP4; exosome complex component RRP4
E UREG_04960 similar to exosomal core protein CSL4 K07573 CSL4; exosome complex component CSL4
D Cofactors
E UREG_01704 hypothetical protein K11600 RRP41; exosome complex component RRP41
E UREG_06460 hypothetical protein K12589 RRP42; exosome complex component RRP42
D Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: July 24, 2025