+F Repair protein KO
#
DNA Repair and Recombination Proteins - Vigna angularis (adzuki bean)
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 108342031 DNA oxidative demethylase ALKBH2 K10859 ALKBH2; DNA oxidative demethylase [EC:1.14.11.33]
D 108331439 DExH-box ATP-dependent RNA helicase DExH14 K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4]
D 108335214 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 108339480 uracil-DNA glycosylase, mitochondrial K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 108329018 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 108322583 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 108331680 N-glycosylase/DNA lyase OGG1 K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E 108335426 putative DNA glycosylase At3g47830 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 108339742 endonuclease III homolog 1, chloroplastic-like K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 108332959 endonuclease III homolog 1, chloroplastic-like K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 108332384 endonuclease III homolog 1, chloroplastic-like K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 108323322 DNA-(apurinic or apyrimidinic site) lyase 2 K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F 108332177 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 108323467 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
F 108333001 uncharacterized LOC108333001 K03504 POLD3; DNA polymerase delta subunit 3
F 108321023 DNA polymerase delta subunit 4 K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F 108340273 DNA polymerase epsilon catalytic subunit A K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F 108343897 DNA polymerase epsilon subunit B K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F 108339947 DNA polymerase epsilon subunit 3 K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
E 108341971 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 108337715 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 108324243 flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E 108340660 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
E 108332337 DNA-repair protein XRCC1 K10803 XRCC1; DNA-repair protein XRCC1
D Other BER factors
E 108319941 tyrosyl-DNA phosphodiesterase 1 K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E 108346640 transcription factor bHLH140 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 108339615 polynucleotide 3'-phosphatase ZDP K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E 108344363 DNA polymerase lambda K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E 108347986 poly [ADP-ribose] polymerase 1 K24070 PARP1; poly [ADP-ribose] polymerase 1 [EC:2.4.2.30]
E 108340446 poly [ADP-ribose] polymerase 3 K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
E 108346138 poly [ADP-ribose] polymerase 2 K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F 108336602 DNA repair protein RAD4-like K10838 XPC; xeroderma pigmentosum group C-complementing protein
F 108324868 ubiquitin receptor RAD23c-like K10839 RAD23; UV excision repair protein RAD23
F 108324093 ubiquitin receptor RAD23c-like K10839 RAD23; UV excision repair protein RAD23
F 108332307 ubiquitin receptor RAD23b K10839 RAD23; UV excision repair protein RAD23
F 108320662 ubiquitin receptor RAD23b-like K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F 108338955 RING-box protein 1a-like K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 108333295 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 108343138 cullin-4 K10609 CUL4; cullin 4
F 108321890 DNA damage-binding protein 1 K10610 DDB1; DNA damage-binding protein 1
F 108343861 protein DAMAGED DNA-BINDING 2 K10140 DDB2; DNA damage-binding protein 2
E NER4 complex
F 108329875 uncharacterized LOC108329875 K15082 RAD7; DNA repair protein RAD7
F 108338672 uncharacterized LOC108338672 K15082 RAD7; DNA repair protein RAD7
F 108334284 ATP-dependent helicase rhp16 K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F 108321285 DNA-directed RNA polymerase II subunit 1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F 108331809 DNA-directed RNA polymerase II subunit RPB2-like K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F 108342943 DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F 108337125 DNA-directed RNA polymerases II, IV and V subunit 3-like K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F 108342332 DNA-directed RNA polymerases IV and V subunit 4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 108346979 DNA-directed RNA polymerase II subunit 4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 108343976 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 108344854 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 108334101 DNA-directed RNA polymerase V subunit 5C-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 108327919 DNA-directed RNA polymerase V subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 108323607 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 108326641 DNA-directed RNA polymerases II, IV and V subunit 6A K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 108324983 DNA-directed RNA polymerases II, IV and V subunit 6A-like K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 108337580 DNA-directed RNA polymerase II subunit RPB7-like K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F 108319348 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F 108324311 DNA-directed RNA polymerases II, IV and V subunit 8B-like K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 108330888 DNA-directed RNA polymerases II, IV and V subunit 8B-like K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 108322264 DNA-directed RNA polymerases II, IV and V subunit 9A K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 108336252 DNA-directed RNA polymerases II, IV and V subunit 9A K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 108331127 DNA-directed RNA polymerase subunit 10-like protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 108335441 DNA-directed RNA polymerase subunit 10-like protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 108339721 DNA-directed RNA polymerases II, IV and V subunit 11 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F 108345089 DNA-directed RNA polymerases II, IV and V subunit 12 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F 108338955 RING-box protein 1a-like K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 108333295 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 108343138 cullin-4 K10609 CUL4; cullin 4
F 108321890 DNA damage-binding protein 1 K10610 DDB1; DNA damage-binding protein 1
F 108329979 DNA excision repair protein ERCC-8 K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F 108326020 protein CHROMATIN REMODELING 8 K10841 ERCC6; DNA excision repair protein ERCC-6
F 108343529 UV-stimulated scaffold protein A homolog K23720 UVSSA; UV-stimulated scaffold protein A
F 108343165 transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E 108347556 DNA repair helicase XPB1 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 108345759 DNA repair helicase XPD K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E 108343287 probable RNA polymerase II transcription factor B subunit 1-1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E 108327743 general transcription factor IIH subunit 2 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E 108332154 RNA polymerase II transcription factor B subunit 4 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E 108336424 RNA polymerase II transcription factor B subunit 2 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E 108320097 RNA polymerase II transcription factor B subunit 5-like K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E 108320113 RNA polymerase II transcription factor B subunit 5-like K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E 108323406 cyclin-dependent kinase D-3-like K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 108346090 cyclin-dependent kinase D-3-like K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 108346043 cyclin-H1-1 K06634 CCNH; cyclin H
E 108344780 uncharacterized LOC108344780 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E 108334613 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 108332138 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 108332166 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 108337352 replication protein A 32 kDa subunit A K10739 RFA2; replication factor A2
E 108322142 replication protein A 32 kDa subunit A-like K10739 RFA2; replication factor A2
E 108325513 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
E 108329116 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
D Other NER factors
E 108346112 DNA excision repair protein ERCC-1 K10849 ERCC1; DNA excision repair protein ERCC-1
E 108334579 DNA repair endonuclease UVH1 K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E 108329081 DNA repair protein UVH3 K10846 ERCC5; DNA excision repair protein ERCC-5
E 108340660 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 108334072 MMS19 nucleotide excision repair protein homolog K15075 MET18; DNA repair/transcription protein MET18/MMS19
E 108345728 cullin-3A-like K03869 CUL3; cullin 3
E 108318883 cullin-3A-like K03869 CUL3; cullin 3
E 108333302 transcription elongation factor B polypeptide 1 K03872 ELOC; elongin-C
E 108325070 uncharacterized LOC108325070 K03873 ELOB; elongin-B
E 108342182 transcription elongation factor B polypeptide 3 K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 108323623 DNA mismatch repair protein MSH2 K08735 MSH2; DNA mismatch repair protein MSH2
E 108326678 DNA mismatch repair protein MSH3 K08736 MSH3; DNA mismatch repair protein MSH3
E 108329230 DNA mismatch repair protein MSH6 K08737 MSH6; DNA mismatch repair protein MSH6
E 108343740 DNA mismatch repair protein MSH7 K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E 108333915 DNA mismatch repair protein MLH1 K08734 MLH1; DNA mismatch repair protein MLH1
E 108346141 DNA mismatch repair protein PMS1 K10858 PMS2; DNA mismatch repair protein PMS2
E 108335771 DNA mismatch repair protein MLH3 K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E 108332177 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 108323467 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
E 108333001 uncharacterized LOC108333001 K03504 POLD3; DNA polymerase delta subunit 3
E 108321023 DNA polymerase delta subunit 4 K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E 108334613 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 108332138 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 108332166 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 108337352 replication protein A 32 kDa subunit A K10739 RFA2; replication factor A2
E 108322142 replication protein A 32 kDa subunit A-like K10739 RFA2; replication factor A2
E 108325513 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
E 108329116 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
D RFC (replication factor C)
E 108340513 replication factor C subunit 1 K10754 RFC1; replication factor C subunit 1
E 108333860 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E 108330850 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E 108330811 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
E 108331274 replication factor C subunit 3-like K10756 RFC3_5; replication factor C subunit 3/5
E 108343886 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
E 108334805 uncharacterized LOC108334805 K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E 108341971 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 108337715 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 108324457 exonuclease 1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 108344945 exonuclease 1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 108340660 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 108334553 WD repeat-containing protein 76-like K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E 108334193 double-strand break repair protein MRE11 K10865 MRE11; double-strand break repair protein MRE11
E 108319056 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 108338577 nijmegen breakage syndrome 1 protein K10867 NBN; nibrin
D BRCA1-core complex
E 108340973 protein BREAST CANCER SUSCEPTIBILITY 1 homolog K10683 BARD1; BRCA1-associated RING domain protein 1
E 108323219 BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
D BRCA1-A complex
E 108330835 uncharacterized LOC108330835 K20776 BABAM; BRISC and BRCA1-A complex member 1
E 108334373 BRCA1-A complex subunit BRE K12173 BRE; BRCA1-A complex subunit BRE
E 108342688 lys-63-specific deubiquitinase BRCC36-like K11864 BRCC3; BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
E 108332321 lys-63-specific deubiquitinase BRCC36-like K11864 BRCC3; BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
D BRCA1-B complex
E 108338587 Fanconi anemia group J protein homolog K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
E 108338350 DNA topoisomerase 2-binding protein 1-A K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
E 108326517 BRCT domain-containing protein At4g02110 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
D BRCA1-C complex
E 108334193 double-strand break repair protein MRE11 K10865 MRE11; double-strand break repair protein MRE11
E 108319056 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 108338577 nijmegen breakage syndrome 1 protein K10867 NBN; nibrin
D BRCA complex
E 108343332 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like K08775 BRCA2; breast cancer 2 susceptibility protein
E 108335372 DNA repair protein RAD51 homolog A K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E 108335372 DNA repair protein RAD51 homolog A K04482 RAD51; DNA repair protein RAD51
E 108333354 DNA repair protein RAD51 homolog 2 K10869 RAD51L1; RAD51-like protein 1
E 108322875 DNA repair protein RAD51 homolog 3-like K10870 RAD51L2; RAD51-like protein 2
E 108322877 DNA repair protein RAD51 homolog 3-like K10870 RAD51L2; RAD51-like protein 2
E 108319666 DNA repair protein RAD51 homolog 3-like K10870 RAD51L2; RAD51-like protein 2
E 108319670 DNA repair protein RAD51 homolog 3-like K10870 RAD51L2; RAD51-like protein 2
E 108323441 DNA repair protein RAD51 homolog 4 K10871 RAD51L3; RAD51-like protein 3
E 108338937 DNA repair protein XRCC2 homolog K10879 XRCC2; DNA-repair protein XRCC2
E 108337791 DNA repair protein XRCC3 homolog K10880 XRCC3; DNA-repair protein XRCC3
D Rad52 family proteins
E 108339661 uncharacterized LOC108339661 K26556 RAD52-1; DNA repair RAD52-like protein 1, mitochondrial
E 108326455 uncharacterized LOC108326455 K26558 RAD52-2; DNA repair RAD52-like protein 2, chloroplastic
D Rad54 family proteins
E 108338190 SNF2 domain-containing protein CLASSY 2-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 108319887 protein CHROMATIN REMODELING 25 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 108338958 protein CHROMATIN REMODELING 35-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 108340579 protein CHROMATIN REMODELING 35-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 108326976 SNF2 domain-containing protein CLASSY 3-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 108328009 SNF2 domain-containing protein CLASSY 4-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
D RecQ family DNA helicases
E 108326403 ATP-dependent DNA helicase Q-like 1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 108335857 mediator of RNA polymerase II transcription subunit 34 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 108324296 ATP-dependent DNA helicase Q-like SIM K10900 WRN; werner syndrome ATP-dependent helicase [EC:5.6.2.4]
E 108332000 ATP-dependent DNA helicase Q-like 3 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 108340910 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 108321972 ATP-dependent DNA helicase Q-like 5 K10730 RECQL4; ATP-dependent DNA helicase Q4 [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E 108332000 ATP-dependent DNA helicase Q-like 3 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 108340910 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 108319036 DNA topoisomerase 3-beta K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 108331574 DNA topoisomerase 3-alpha K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 108331265 recQ-mediated genome instability protein 1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 108339968 recQ-mediated genome instability protein 2 K15365 RMI2; RecQ-mediated genome instability protein 2
D RPA (replication factor A)
E 108334613 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 108332138 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 108332166 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 108337352 replication protein A 32 kDa subunit A K10739 RFA2; replication factor A2
E 108322142 replication protein A 32 kDa subunit A-like K10739 RFA2; replication factor A2
E 108325513 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
E 108329116 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
D Protein phosphatase 4
E 108338468 serine/threonine-protein phosphatase PP-X isozyme 2 K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E 108338812 serine/threonine-protein phosphatase 4 regulatory subunit 2 K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E 108346306 serine/threonine-protein phosphatase 4 regulatory subunit 3-like K17491 SMEK; protein phosphatase 4 regulatory subunit 3
E 108322293 serine/threonine-protein phosphatase 4 regulatory subunit 3-like K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
E 108335095 AP-5 complex subunit beta-1 K19022 AP5B1; AP-5 complex subunit beta-1
E 108334919 AP-5 complex subunit mu K19023 AP5M1; AP-5 complex subunit mu-1
E 108339297 AP-5 complex subunit zeta-1 K19025 AP5Z1; AP-5 complex subunit zeta-1
D SMC5-SMC6 complex
E 108347040 structural maintenance of chromosomes protein 5 K22803 SMC5; structural maintenance of chromosomes protein 5
E 108340706 structural maintenance of chromosomes protein 6B K22804 SMC6; structural maintenance of chromosomes protein 6
E 108319992 non-structural maintenance of chromosomes element 1 homolog K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E 108333197 E3 SUMO-protein ligase MMS21 K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E 108326418 non-structural maintenance of chromosomes element 4 homolog A-like K22825 NSMCE4; non-structural maintenance of chromosomes element 4
E 108323475 non-structural maintenance of chromosomes element 4 homolog A-like K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E 108320891 crossover junction endonuclease EME1B-like K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E 108334342 crossover junction endonuclease MUS81 K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E 108337203 protein DSS1 HOMOLOG ON CHROMOSOME V-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 108330755 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 108339867 structure-specific endonuclease subunit slx1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 108343069 structure-specific endonuclease subunit SLX1 homolog 1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 108327032 flap endonuclease GEN-like 1 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 108343909 flap endonuclease GEN-like 2 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 108330498 uncharacterized LOC108330498 K19026 SPG11; spatacsin
E 108331427 uncharacterized LOC108331427 K19027 ZFYVE26; zinc finger FYVE domain-containing protein 26
E 108323521 protein MRG1 K11339 MORF4L1; mortality factor 4-like protein 1
E 108342009 protein MRG2-like K11339 MORF4L1; mortality factor 4-like protein 1
E 108344802 deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 108345541 fidgetin-like protein 1 K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E 108334059 zinc finger SWIM domain-containing protein 7 K25770 ZSWIM7; zinc finger SWIM domain-containing protein 7
E 108319005 Werner Syndrome-like exonuclease K22807 WRNexo; werner syndrome-like exonuclease [EC:3.1.11.-]
E 108333143 DNA-dependent metalloprotease WSS1-like K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 108342254 uncharacterized LOC108342254 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 108333608 single-stranded DNA-binding protein WHY1, chloroplastic-like K26559 WHY1; single-stranded DNA-binding protein WHY1
E 108343725 single-stranded DNA-bindig protein WHY2, mitochondrial K26561 WHY2; single-stranded DNA-binding protein WHY2
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E 108326270 ATP-dependent DNA helicase 2 subunit KU70 K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E 108347664 ATP-dependent DNA helicase 2 subunit KU80 K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E 108334193 double-strand break repair protein MRE11 K10865 MRE11; double-strand break repair protein MRE11
E 108319056 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
E 108331720 DNA ligase 4 K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E 108325039 DNA repair protein XRCC4-like K10886 XRCC4; DNA-repair protein XRCC4
D X-family DNA polymerases
E 108344363 DNA polymerase lambda K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
D Other NHEJ factors
E 108346640 transcription factor bHLH140 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 108334596 uncharacterized LOC108334596 K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
C FA (Fanconi anemia) pathway
D FA core complex
E 108340289 ATP-dependent DNA helicase fml1 K10896 FANCM; fanconi anemia group M protein
D FA core complex binding factors
E 108331284 centromere protein S K11511 APITD1; centromere protein S
E 108336413 centromere protein X K15360 STRA13; centromere protein X
D Bloom's syndrome complex (BTR)
E 108332000 ATP-dependent DNA helicase Q-like 3 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 108340910 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 108319036 DNA topoisomerase 3-beta K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 108331574 DNA topoisomerase 3-alpha K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 108331265 recQ-mediated genome instability protein 1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 108339968 recQ-mediated genome instability protein 2 K15365 RMI2; RecQ-mediated genome instability protein 2
D FANCD2-I complex
D Downstream FA components
E 108343332 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like K08775 BRCA2; breast cancer 2 susceptibility protein
E 108338587 Fanconi anemia group J protein homolog K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
D Other FA pathway factors
E 108328145 fanconi-associated nuclease 1 homolog K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E 108319434 fanconi-associated nuclease 1 homolog K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E 108335372 DNA repair protein RAD51 homolog A K04482 RAD51; DNA repair protein RAD51
E 108322875 DNA repair protein RAD51 homolog 3-like K10870 RAD51L2; RAD51-like protein 2
E 108322877 DNA repair protein RAD51 homolog 3-like K10870 RAD51L2; RAD51-like protein 2
E 108319666 DNA repair protein RAD51 homolog 3-like K10870 RAD51L2; RAD51-like protein 2
E 108319670 DNA repair protein RAD51 homolog 3-like K10870 RAD51L2; RAD51-like protein 2
E 108331442 telomere length regulation protein TEL2 homolog K11137 TELO2; telomere length regulation protein
E 108343002 WD repeat-containing protein 48-like K15361 WDR48; WD repeat-containing protein 48
E 108343044 WD repeat-containing protein 48-like K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
E 108335734 phytochrome-associated serine/threonine-protein phosphatase K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E 108325928 phytochrome-associated serine/threonine-protein phosphatase K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E 108334113 serine/threonine-protein phosphatase 6 regulatory subunit 3 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E 108342954 serine/threonine-protein phosphatase 6 regulatory subunit 3 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
D Ubiquitin ligases
D Others
E 108343923 telomerase Cajal body protein 1 K23314 WRAP53; telomerase Cajal body protein 1
E 108323014 WD repeat-containing protein 70 K24752 WDR70; WD repeat-containing protein 70
E 108334553 WD repeat-containing protein 76-like K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D 108319099 DNA polymerase eta K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D 108319976 DNA polymerase kappa K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D 108319965 DNA repair protein REV1 K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D 108342831 DNA polymerase zeta catalytic subunit K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D 108321754 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 108322479 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 108345642 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 108342911 ubiquitin-conjugating enzyme E2 2-like K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 108334331 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D 108324257 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D 108327952 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D 108320108 ubiquitin-conjugating enzyme E2 variant 1A-like K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 108329755 ubiquitin-conjugating enzyme E2 variant 1D-like K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 108322741 ubiquitin-conjugating enzyme E2 variant 1D K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 108335657 ubiquitin-conjugating enzyme E2 variant 1A K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 108340444 ubiquitin-conjugating enzyme E2 35-like K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
D 108333960 ubiquitin-conjugating enzyme E2 35 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D 108341971 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
D 108337715 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
B Check point factors
C Rad9-Hus1-Rad1 complex
D 108343108 cell cycle checkpoint control protein RAD9A K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D 108345032 uncharacterized LOC108345032 K10903 HUS1; HUS1 checkpoint protein
D 108324145 uncharacterized LOC108324145 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D 108343549 cell cycle checkpoint protein RAD17 K06662 HRAD17; cell cycle checkpoint protein
D 108333860 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D 108330850 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D 108330811 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D 108331274 replication factor C subunit 3-like K10756 RFC3_5; replication factor C subunit 3/5
D 108343886 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D 108334805 uncharacterized LOC108334805 K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D 108324145 uncharacterized LOC108324145 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D 108324100 uncharacterized LOC108324100 K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D 108339796 TIMELESS-interacting protein K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
C Triple T complex
D 108331442 telomere length regulation protein TEL2 homolog K11137 TELO2; telomere length regulation protein
D 108335723 uncharacterized LOC108335723 K20403 TTI1; TELO2-interacting protein 1
D 108328381 uncharacterized protein At2g39910 K23115 TTI2; TELO2-interacting protein 2
C BAG6-UBL4A-GET4 complex
D 108342333 large proline-rich protein BAG6 K23390 BAG6; large proline-rich protein BAG6
D 108326541 Golgi to ER traffic protein 4 homolog K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D 108325877 serine/threonine-protein kinase ATR K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D 108331474 serine/threonine-protein kinase ATM K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D 108338314 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 108321711 14-3-3-like protein A K06630 YWHAE; 14-3-3 protein epsilon
D 108343495 14-3-3-like protein GF14 iota K06630 YWHAE; 14-3-3 protein epsilon
D 108332887 uncharacterized LOC108332887 K06630 YWHAE; 14-3-3 protein epsilon
D 108334132 14-3-3-like protein D K06630 YWHAE; 14-3-3 protein epsilon
D 108331757 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 108331903 14-3-3-like protein B K06630 YWHAE; 14-3-3 protein epsilon
D 108319389 14-3-3-like protein C K06630 YWHAE; 14-3-3 protein epsilon
D 108346865 wee1-like protein kinase K06632 WEE1; wee1-like protein kinase [EC:2.7.11.1]
D 108319786 wee1-like protein kinase K06632 WEE1; wee1-like protein kinase [EC:2.7.11.1]
D 108327093 wee1-like protein kinase K06632 WEE1; wee1-like protein kinase [EC:2.7.11.1]
D 108343367 uncharacterized LOC108343367 K20780 MDC1; mediator of DNA damage checkpoint protein 1
D 108334053 serine/threonine-protein kinase Nek5-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 108347916 serine/threonine-protein kinase Nek4-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 108329434 serine/threonine-protein kinase Nek6-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 108345722 serine/threonine-protein kinase Nek2-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 108325953 serine/threonine-protein kinase Nek2 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 108325971 serine/threonine-protein kinase Nek5-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 108340369 serine/threonine-protein kinase Nek5 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 108329462 uncharacterized LOC108329462 K22422 DONSON; protein downstream neighbor of Son
D 108340364 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 108334156 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 108340899 protein SDE2 homolog K25059 SDE2; replication stress response regulator SDE2
D 108340977 protein DECREASED SIZE EXCLUSION LIMIT 1 K24770 DSE1; protein decreased size exclusion limit 1
B Other factors with a suspected DNA repair function
C DNA polymerases
D 108337988 helicase and polymerase-containing protein TEBICHI K02349 POLQ; DNA polymerase theta [EC:2.7.7.7]
D 108342790 DNA polymerase V K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
D 108344820 DNA-directed primase/polymerase protein K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
C Nucleases
D 108328039 DNA cross-link repair protein SNM1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 108330869 DNA cross-link repair protein SNM1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 108339805 5' exonuclease Apollo K15341 DCLRE1B; DNA cross-link repair 1B protein [EC:3.1.-.-]
D 108339042 exonuclease V, chloroplastic K17815 EXO5; exonuclease V [EC:3.1.-.-]
D 108336959 endonuclease V K21813 ENDOV; endonuclease V [EC:3.1.26.-]
D 108344510 DNA annealing helicase and endonuclease ZRANB3 K25861 ZRANB3; DNA annealing helicase and endonuclease ZRANB3 [EC:5.6.2.- 3.1.-.-]
D 108342453 endonuclease 1 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 108325579 endonuclease 2 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D 108340782 switch 2 K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D 108326316 pre-mRNA-processing factor 19-like K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D 108340398 cell division cycle 5-like protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D 108345566 cell division cycle 5-like protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D 108332454 pre-mRNA-splicing factor SPF27 homolog K12861 BCAS2; pre-mRNA-splicing factor SPF27
D 108321045 protein pleiotropic regulatory locus 1 K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D 108335497 nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 108338134 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 108323826 ribonucleoside-diphosphate reductase large subunit K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 108348006 ribonucleoside-diphosphate reductase large subunit-like K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 108334791 ribonucleoside-diphosphate reductase small chain A K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D 108327962 ribonucleoside-diphosphate reductase small chain-like K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D 108329318 ribonucleoside-diphosphate reductase small chain K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 108335214 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 108339480 uracil-DNA glycosylase, mitochondrial K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 108343170 DNA-3-methyladenine glycosylase 1 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 108329018 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 108322583 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 108342212 uncharacterized LOC108342212 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 108320587 probable GMP synthase [glutamine-hydrolyzing] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 108332284 uncharacterized LOC108332284 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 108335396 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 108339035 uncharacterized LOC108339035 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 108345657 probable GMP synthase [glutamine-hydrolyzing] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 108334921 probable GMP synthase [glutamine-hydrolyzing] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 108332500 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E 108335426 putative DNA glycosylase At3g47830 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 108339742 endonuclease III homolog 1, chloroplastic-like K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 108332959 endonuclease III homolog 1, chloroplastic-like K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 108332384 endonuclease III homolog 1, chloroplastic-like K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 108324282 DNA-(apurinic or apyrimidinic site) lyase, chloroplastic K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
D DNA ligase
D DNA polymerase I
E 108338257 DNA polymerase I A, chloroplastic/mitochondrial-like K02335 polA; DNA polymerase I [EC:2.7.7.7]
E 108343038 DNA polymerase I A, chloroplastic/mitochondrial K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E 108338257 DNA polymerase I A, chloroplastic/mitochondrial-like K02335 polA; DNA polymerase I [EC:2.7.7.7]
E 108343038 DNA polymerase I A, chloroplastic/mitochondrial K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F 15382710 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F 15382685 rpoC1; RNA polymerase beta subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 15382686 rpoC2; RNA polymerase beta subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 15382650 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 108347773 endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E 108330358 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E 108339155 DNA repair protein recA homolog 1, chloroplastic-like K03553 recA; recombination protein RecA
E 108329911 DNA repair protein recA homolog 3, mitochondrial-like K03553 recA; recombination protein RecA
E 108322682 DNA repair protein recA homolog 3, mitochondrial-like K03553 recA; recombination protein RecA
D RecFOR pathway proteins
E 108339155 DNA repair protein recA homolog 1, chloroplastic-like K03553 recA; recombination protein RecA
E 108329911 DNA repair protein recA homolog 3, mitochondrial-like K03553 recA; recombination protein RecA
E 108322682 DNA repair protein recA homolog 3, mitochondrial-like K03553 recA; recombination protein RecA
E 108333451 DNA repair protein RadA-like K04485 radA; DNA repair protein RadA/Sms
E 108333452 DNA repair protein RadA-like K04485 radA; DNA repair protein RadA/Sms
E 108320673 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E 108335774 ATP-dependent DNA helicase homolog RECG, chloroplastic K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F 108335759 DNA gyrase subunit A, chloroplastic/mitochondrial K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F 108329366 DNA gyrase subunit B, chloroplastic/mitochondrial K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
F 108343536 probable ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D 108339155 DNA repair protein recA homolog 1, chloroplastic-like K03553 recA; recombination protein RecA
D 108329911 DNA repair protein recA homolog 3, mitochondrial-like K03553 recA; recombination protein RecA
D 108322682 DNA repair protein recA homolog 3, mitochondrial-like K03553 recA; recombination protein RecA
D 108330358 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D 108335497 nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 108338134 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024