+E Transcription factors KO
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Transcription Factors - Vibrio cholerae O27 10432-62
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D VAB027_2716 helix-turn-helix domain protein K19693 tfoS; AraC family transcriptional regulator, chitin signaling transcriptional activator
D VAB027_1112 helix-turn-helix domain protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D VAB027_1532 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D VAB027_3700 bacterial regulatory helix-turn-helix, lysR family protein K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D VAB027_2351 bacterial regulatory helix-turn-helix, lysR family protein K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D VAB027_3170 bacterial regulatory helix-turn-helix, lysR family protein K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D VAB027_2220 bacterial regulatory helix-turn-helix, lysR family protein K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D VAB027_254 bacterial regulatory helix-turn-helix, lysR family protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D VAB027_1392 bacterial regulatory helix-turn-helix, lysR family protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D VAB027_786 argP; transcriptional regulator, ArgP family protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D VAB027_3342 argP; transcriptional regulator, ArgP family protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D VAB027_3109 bacterial regulatory helix-turn-helix, lysR family protein K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D VAB027_1730 bacterial regulatory helix-turn-helix, lysR family protein K10918 aphB; LysR family transcriptional regulator, transcriptional activator AphB
D VAB027_2552 bacterial regulatory helix-turn-helix, lysR family protein K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D VAB027_313 dsdC; D-serine deaminase transcriptional activator K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator
D VAB027_1110 bacterial regulatory helix-turn-helix, lysR family protein K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
D VAB027_1183 deoR-like helix-turn-helix domain protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D VAB027_2196 deoR-like helix-turn-helix domain protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D VAB027_800 deoR-like helix-turn-helix domain protein K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor
C LacI family
D VAB027_2969 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D VAB027_899 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D VAB027_218 bacterial regulatory s, lacI family protein K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D VAB027_640 D-fructose-responsive transcription factor family protein K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D VAB027_512 bacterial regulatory s, lacI family protein K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D VAB027_1545 treR; trehalose operon repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D VAB027_2366 bacterial regulatory s, lacI family protein K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D VAB027_3557 bacterial regulatory s, lacI family protein K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
C GntR family
D VAB027_1885 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D VAB027_2545 fadR; fatty acid metabolism transcriptional regulator FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D VAB027_3040 bacterial regulatory s, gntR family protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
C TetR/AcrR family
D VAB027_3695 bacterial regulatory s, tetR family protein K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor
D VAB027_3636 bacterial regulatory s, tetR family protein K05501 slmA; TetR/AcrR family transcriptional regulator
D VAB027_3261 smcR; quorum-sensing regulator of virulence HapR K10913 hapR; TetR/AcrR family transcriptional regulator, hemagglutinin/protease regulatory protein
D VAB027_2385 bacterial regulatory s, tetR family protein K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness
D VAB027_577 bacterial regulatory s, tetR family protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D VAB027_130 bacterial regulatory s, tetR family protein K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
C Lrp/AsnC family
D VAB027_63 asnC-type helix-turn-helix domain protein K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D VAB027_2549 lrp; leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D VAB027_1066 asnC-type helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D VAB027_2358 asnC-type helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D VAB027_1746 asnC-type helix-turn-helix domain protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D VAB027_3435 bacterial regulatory s, luxR family protein K04333 csgD; LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein
D VAB027_1172 transcriptional regulator, LuxR family K20918 vpsT; LuxR family transcriptional regulator, positive regulator of biofilm formation
D VAB027_1009 bacterial regulatory s, luxR family protein K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D VAB027_1122 winged helix DNA-binding domain protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D VAB027_1662 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D VAB027_3568 zntR; Zn(II)-responsive transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D VAB027_942 soxR; redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D VAB027_968 merR regulatory family protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
C Fur family
D VAB027_2740 fur; ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D VAB027_3456 ferric uptake regulator family protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
C CRP/FNR family
D VAB027_1256 bacterial regulatory s, crp family protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D VAB027_2107 bacterial regulatory s, crp family protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D VAB027_1403 iscR; iron-sulfur cluster assembly transcription factor IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
C ArsR family
D VAB027_1752 bacterial regulatory, arsR family protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D VAB027_3169 transcriptional activator HlyU K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
C XRE family
C PadR family
D VAB027_244 transcriptional regulator PadR-like family protein K10917 aphA; PadR family transcriptional regulator, regulatory protein AphA
C Other families
D VAB027_3666 SIS domain protein K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor
D VAB027_1829 SIS domain protein K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D VAB027_3527 biotin operon repressor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D VAB027_3554 fis; DNA-binding protein fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D VAB027_3148 trpR; trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D VAB027_1555 winged helix-turn-helix DNA-binding family protein K07724 ner; Ner family transcriptional regulator
D VAB027_585 bacterial extracellular solute-binding s, 5 Middle family protein K11925 sgrR; SgrR family transcriptional regulator
D VAB027_1465 helix-turn-helix family protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D VAB027_2769 AAA domain family protein K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D VAB027_3180 bacterial regulatory, Fis family protein K20919 vpsR; sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation
D VAB027_2470 bacterial regulatory, Fis family protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D VAB027_912 AAA domain family protein K11908 vasH; sigma-54 dependent transcriptional regulator
D VAB027_857 luxO; regulatory protein luxO K12266 norR; anaerobic nitric oxide reductase transcription regulator
D VAB027_720 putative addiction module antitoxin HigA K07726 K07726; putative transcriptional regulator
D VAB027_3651 cro/C1-type HTH DNA-binding domain protein K07727 K07727; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D VAB027_214 met Apo-repressor, MetJ family protein K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D VAB027_1061 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D VAB027_2935 bolA-like family protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D VAB027_3726 ParB/RepB/Spo0J family partition domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D VAB027_1020 ParB/RepB/Spo0J family partition domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D VAB027_1676 rfaH; transcription elongation factor/antiterminator RfaH K05785 rfaH; transcriptional antiterminator RfaH
D VAB027_3400 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D VAB027_1679 marR family protein K02565 nagC; N-acetylglucosamine repressor
D VAB027_2641 transcriptional regulator, ROK family K15545 mlc; transcriptional regulator of PTS gene
D VAB027_1087 mtlR; mannitol operon repressor K02562 mtlR; mannitol operon repressor
D VAB027_1984 TyrR family helix-turn-helix domain protein K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D VAB027_3567 hypothetical protein K03765 cadC; transcriptional activator of cad operon
D VAB027_2787 glycine cleavage system transcriptional repressor, putative K03567 gcvR; glycine cleavage system transcriptional repressor
D VAB027_2326 pspF; psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator
D VAB027_2323 pspC; phage shock protein C K03973 pspC; phage shock protein C
D VAB027_557 hypothetical protein K06140 rnk; regulator of nucleoside diphosphate kinase
D VAB027_1478 prophage CP4-57 regulatory family protein K07733 alpA; prophage regulatory protein
D VAB027_1467 prophage CP4-57 regulatory family protein K07733 alpA; prophage regulatory protein
D VAB027_3645 prophage CP4-57 regulatory family protein K07733 alpA; prophage regulatory protein
D VAB027_3647 DNA binding, excisionase family domain protein K07733 alpA; prophage regulatory protein
D VAB027_3356 hypothetical protein K07735 algH; putative transcriptional regulator
D VAB027_1578 prokaryotic dksA/traR C4-type zinc finger family protein K06204 dksA; RNA polymerase-binding transcription factor
D VAB027_3250 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D VAB027_2912 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D VAB027_2915 transcriptional regulator Crl family protein K11926 crl; sigma factor-binding protein Crl
D VAB027_1242 DNA-binding transcriptional regulator Cro family protein K22302 dicC; transcriptional repressor of cell division inhibition gene dicB
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0