+E Messenger RNA Biogenesis KO
#
Messenger RNA Biogenesis - Verticillium dahliae
%
!
AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E VDAG_05536 mRNA cap methyltransferase K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E VDAG_05493 cell division control protein K04563 CDC28; cyclin-dependent kinase [EC:2.7.11.22]
E VDAG_05749 mRNA-capping enzyme subunit alpha K00987 CEG1; mRNA guanylyltransferase [EC:2.7.7.50]
D Cap binding complex
E VDAG_08432 cap binding protein K12882 NCBP1; nuclear cap-binding protein subunit 1
E VDAG_05874 nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E VDAG_05766 cleavage and polyadenylation specificity factor subunit 5 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
D Pre-mRNA cleavage factor IIm (CFIIm)
E VDAG_07989 Clp1 protein K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E VDAG_06770 hypothetical protein K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E VDAG_06137 cft-1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E VDAG_09937 cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E VDAG_06928 endoribonuclease YSH1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E VDAG_06824 mRNA 3'-end-processing protein YTH1 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E VDAG_08160 pre-mRNA polyadenylation factor FIP1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E VDAG_00026 MPE1 protein K15541 MPE1; protein MPE1
E VDAG_06445 polyadenylation factor subunit 2 K15542 PFS2; polyadenylation factor subunit 2
E VDAG_06643 WD repeat-containing protein K14962 WDR82; COMPASS component SWD2
E VDAG_06057 serine/threonine-protein phosphatase PP-Z K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E VDAG_06422 serine/threonine-protein phosphatase PP1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E VDAG_01018 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E VDAG_04254 RNA-binding protein K14407 CSTF2; cleavage stimulation factor subunit 2
E VDAG_09844 mRNA 3'-end-processing protein RNA14 K14408 CSTF3; cleavage stimulation factor subunit 3
E VDAG_03300 hypothetical protein K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E VDAG_10349 SMB protein K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E VDAG_00399 LSM domain-containing protein K11097 SNRPE; small nuclear ribonucleoprotein E
E VDAG_02007 LSM domain-containing protein K11098 SNRPF; small nuclear ribonucleoprotein F
E VDAG_06186 hypothetical protein K11099 SNRPG; small nuclear ribonucleoprotein G
E VDAG_09937 cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E VDAG_06928 endoribonuclease YSH1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E VDAG_04254 RNA-binding protein K14407 CSTF2; cleavage stimulation factor subunit 2
E VDAG_03300 hypothetical protein K06100 SYMPK; symplekin
D DRB sensitivity inducing factor (DSIF) complex
E VDAG_08363 transcription elongation factor spt-4 K15171 SUPT4H1; transcription elongation factor SPT4
E VDAG_01211 transcription elongation factor SPT5 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E VDAG_08081 DUF890 domain-containing protein K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E VDAG_01751 hypothetical protein K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
D Poly(A) addition factors
E VDAG_06621 Poly(A) polymerase pla1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
D Negative regulators of mRNA 3' end processing
C Other processing factors
D VDAG_08364 zinc finger protein RTS2 K13102 KIN; DNA/RNA-binding protein KIN17
D VDAG_04465 hypothetical protein K27103 SRRT; serrate RNA effector molecule
D VDAG_04486 nuclear polyadenylated RNA-binding protein NAB2 K23039 NAB2; nuclear polyadenylated RNA-binding protein NAB2
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E VDAG_01045 RNA-binding protein 8A K12876 RBM8A; RNA-binding protein 8A
E VDAG_07829 Mago nashi protein K12877 MAGOH; protein mago nashi
E VDAG_04215 RNA binding domain-containing protein K12881 THOC4; THO complex subunit 4
E VDAG_08864 hypothetical protein K12881 THOC4; THO complex subunit 4
E VDAG_01780 ATP-dependent RNA helicase SUB2 K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E VDAG_09310 ATP-dependent RNA helicase FAL1 K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E VDAG_10095 hypothetical protein K25178 CCDC174; coiled-coil domain-containing protein 174
E VDAG_03727 hypothetical protein K14324 SAP18; histone deacetylase complex subunit SAP18
E VDAG_02725 hypothetical protein K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E VDAG_03004 hypothetical protein K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E VDAG_06655 THO complex subunit 1 K12878 THOC1; THO complex subunit 1
E VDAG_00613 THO complex subunit 2 K12879 THOC2; THO complex subunit 2
E VDAG_08833 THO complex subunit 3 K12880 THOC3; THO complex subunit 3
E VDAG_04215 RNA binding domain-containing protein K12881 THOC4; THO complex subunit 4
E VDAG_08864 hypothetical protein K12881 THOC4; THO complex subunit 4
E VDAG_03173 hypothetical protein K13174 THOC5; THO complex subunit 5
D TREX-2 complex
E VDAG_07435 centrin-3 K16466 CETN3; centrin-3
E VDAG_08472 nucear export factor K23719 SAC3; nuclear mRNA export protein SAC3
D Nuclear pore complex
E VDAG_05438 hypothetical protein K09291 TPR; nucleoprotein TPR
E VDAG_01848 Poly(A)+ RNA export protein K14298 RAE1; mRNA export factor
E VDAG_10111 transport protein SEC13 K14004 SEC13; protein transport protein SEC13
E VDAG_02729 nucleoporin nup44 K14308 NUP54; nuclear pore complex protein Nup54
E VDAG_04456 nuclear pore glycoprotein p62 K14306 NUP62; nuclear pore complex protein Nup62
E VDAG_01219 nucleoporin NIC96 K14309 NUP93; nuclear pore complex protein Nup93
E VDAG_07456 nucleoporin nup189 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E VDAG_03000 hypothetical protein K14301 NUP107; nuclear pore complex protein Nup107
E VDAG_08541 hypothetical protein K14300 NUP133; nuclear pore complex protein Nup133
E VDAG_05737 hypothetical protein K14311 NUP188; nuclear pore complex protein Nup188
E VDAG_00742 nucleoporin Nup157/170 K14312 NUP155; nuclear pore complex protein Nup155
E VDAG_05897 hypothetical protein K14310 NUP205; nuclear pore complex protein Nup205
E VDAG_08161 hypothetical protein K14307 NUPL1; nucleoporin p58/p45
E VDAG_07497 nuclear envelope protein K14315 NDC1; nucleoporin NDC1
E VDAG_00412 nuclear pore complex subunit K14299 SEH1; nucleoporin SEH1
E VDAG_04257 hypothetical protein K18715 NUP159; nucleoporin NUP159
E VDAG_09949 CCCH zinc finger domain-containing protein K18716 NUP42; nucleoporin NUP42
E VDAG_05875 hypothetical protein K18719 NUP82; nucleoporin NUP82
E VDAG_07435 centrin-3 K16466 CETN3; centrin-3
E VDAG_01351 nucleoporin GLE1 K18723 GLE1; nucleoporin GLE1
E VDAG_03152 mRNA export factor mex67 K14284 NXF; nuclear RNA export factor
E VDAG_09973 hypothetical protein K14285 NXT1_2; NTF2-related export protein 1/2
E VDAG_08510 hypothetical protein K18724 POM34; nucleoporin POM34
E VDAG_09471 nucleoporin Pom152 K18725 POM152; nucleoporin POM152
D Ran-mediated transport factors
E VDAG_03006 GTP-binding nuclear protein GSP1/Ran K07936 RAN; GTP-binding nuclear protein Ran
E VDAG_10322 UBX domain-containing protein 8-A K18726 FAF2; FAS-associated factor 2
E VDAG_10417 cell division cycle protein K13525 VCP; transitional endoplasmic reticulum ATPase
E VDAG_10000 exportin-1 K14290 XPO1; exportin-1
E VDAG_04418 ran GTPase-activating protein K14319 RANGAP1; Ran GTPase-activating protein 1
D eIF4F and regulatory proteins
E VDAG_01099 eukaryotic translation initiation factor 4E-1 K03259 EIF4E; translation initiation factor 4E
E VDAG_01328 eukaryotic translation initiation factor 4E-4 K03259 EIF4E; translation initiation factor 4E
E VDAG_04288 ATP-dependent RNA helicase eIF4A K03257 EIF4A; translation initiation factor 4A
E VDAG_06653 eukaryotic initiation factor 4F subunit p130 K03260 EIF4G; translation initiation factor 4G
E VDAG_01373 ATP-dependent RNA helicase ded1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E VDAG_01763 ATP-dependent RNA helicase ded-1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E VDAG_08127 GYF domain-containing protein K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E VDAG_01629 polyadenylate-binding protein K13126 PABPC; polyadenylate-binding protein
E VDAG_01641 antiviral helicase SKI2 K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E VDAG_08950 activating signal cointegrator 1 complex subunit 3 K18664 SLH1; antiviral helicase SLH1 [EC:5.6.2.6]
E VDAG_03425 translation machinery-associated protein K07575 MCTS; malignant T-cell-amplified sequence
E VDAG_08815 hypothetical protein K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
D Other transport factors
E VDAG_03145 hypothetical protein K14294 WIBG; partner of Y14 and mago
E VDAG_00125 nuclear polyadenylated RNA-binding protein K14411 MSI; RNA-binding protein Musashi
E VDAG_05517 elongation factor 1-alpha K14416 HBS1; elongation factor 1 alpha-like protein
E VDAG_09658 pelota K06965 PELO; protein pelota
E VDAG_00074 polyadenylate-binding protein K14396 PABPN1; polyadenylate-binding protein 2
E VDAG_00146 ATP-dependent RNA helicase DBP5 K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E VDAG_10422 pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1
E VDAG_04655 hypothetical protein K18732 SARNP; SAP domain-containing ribonucleoprotein
E VDAG_03745 regulator of chromosome condensation K11493 RCC1; regulator of chromosome condensation
E VDAG_07338 RCC1 domain-containing protein K11493 RCC1; regulator of chromosome condensation
E VDAG_09892 SAC3/GANP domain-containing protein K23802 LENG8; SAC3 family protein LENG8/THP3
C Surveillance factors
D Surveillance complex
E VDAG_05953 eukaryotic peptide chain release factor subunit 1 K03265 ETF1; peptide chain release factor subunit 1
E VDAG_07445 eukaryotic peptide chain release factor GTP-binding subunit K03267 ERF3; peptide chain release factor subunit 3
E VDAG_00276 ATP-dependent helicase NAM7 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E VDAG_00377 nonsense-mediated mRNA decay protein K14327 UPF2; regulator of nonsense transcripts 2
E VDAG_02020 hypothetical protein K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E VDAG_00542 serine/threonine-protein phosphatase PP2A catalytic subunit K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E VDAG_06381 protein phosphatase PP2A regulatory subunit A K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E VDAG_08848 protein phosphatase PP2A regulatory subunit B K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E VDAG_01277 serine/threonine protein phosphatase 2A K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E VDAG_08127 GYF domain-containing protein K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E VDAG_09634 GTP-binding protein K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E VDAG_08809 PUF6 protein K14844 PUF6; pumilio homology domain family member 6
E VDAG_04308 Poly(rC)-binding protein K18738 HEK; heterogeneous nuclear rnp K-like protein
E VDAG_06495 Poly(rC)-binding protein K18738 HEK; heterogeneous nuclear rnp K-like protein
E VDAG_08303 myosin-2 K10357 MYO5; myosin V
E VDAG_02623 hypothetical protein K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
D Trans-acting binding proteins
E VDAG_01251 KH domain-containing protein K13210 FUBP; far upstream element-binding protein
E VDAG_02559 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E VDAG_08356 elongation factor 1-gamma 1 K03233 EEF1G; elongation factor 1-gamma
D Other mRNA localization factors
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E VDAG_01384 5'-3' exoribonuclease K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E VDAG_10484 argonaute K11593 ELF2C; eukaryotic translation initiation factor 2C
E VDAG_01099 eukaryotic translation initiation factor 4E-1 K03259 EIF4E; translation initiation factor 4E
E VDAG_01328 eukaryotic translation initiation factor 4E-4 K03259 EIF4E; translation initiation factor 4E
E VDAG_00276 ATP-dependent helicase NAM7 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E VDAG_01373 ATP-dependent RNA helicase ded1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E VDAG_01763 ATP-dependent RNA helicase ded-1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E VDAG_09875 ATP-dependent RNA helicase DHH1 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E VDAG_07530 hypothetical protein K18749 LSM14; protein LSM14
E VDAG_04662 importin subunit beta-2 K18752 TNPO1; transportin-1
E VDAG_02641 cAMP-dependent protein kinase catalytic subunit K04345 PKA; protein kinase A [EC:2.7.11.11]
E VDAG_06474 cAMP-dependent protein kinase K04345 PKA; protein kinase A [EC:2.7.11.11]
E VDAG_08825 la domain family K18757 LARP1; la-related protein 1
D P-body specific factors
E VDAG_06639 mRNA-decapping enzyme K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E VDAG_06800 hypothetical protein K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E VDAG_09635 hypothetical protein K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E VDAG_00629 small nuclear ribonucleoprotein K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E VDAG_08426 hypothetical protein K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E VDAG_03265 LSM domain-containing protein K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E VDAG_10320 hypothetical protein K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E VDAG_03107 hypothetical protein K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E VDAG_08303 myosin-2 K10357 MYO5; myosin V
E VDAG_03302 tubulin alpha chain K07374 TUBA; tubulin alpha
E VDAG_04060 tubulin alpha chain K07374 TUBA; tubulin alpha
E VDAG_07472 hypothetical protein K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E VDAG_00656 hypothetical protein K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E VDAG_00097 CCR4-NOT transcription complex subunit 3 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E VDAG_05474 general negative regulator of transcription subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E VDAG_04694 glucose-repressible alcohol dehydrogenase transcriptional effector K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E VDAG_06391 CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E VDAG_07430 PAB-dependent poly(A)-specific ribonuclease subunit PAN2 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E VDAG_10321 PAB-dependent poly(A)-specific ribonuclease subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E VDAG_09905 hypothetical protein K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E VDAG_10416 hypothetical protein K12615 EDC3; enhancer of mRNA-decapping protein 3
E VDAG_00377 nonsense-mediated mRNA decay protein K14327 UPF2; regulator of nonsense transcripts 2
E VDAG_02020 hypothetical protein K14328 UPF3; regulator of nonsense transcripts 3
E VDAG_04392 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
D Stress granule specific factors
E VDAG_06648 nucleolysin TIA-1 K13201 TIA1; nucleolysin TIA-1/TIAR
E VDAG_01629 polyadenylate-binding protein K13126 PABPC; polyadenylate-binding protein
E VDAG_05931 hypothetical protein K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E VDAG_09497 eukaryotic translation initiation factor 2A K15026 EIF2A; translation initiation factor 2A
E VDAG_02967 eukaryotic translation initiation factor 3 subunit B K03253 EIF3B; translation initiation factor 3 subunit B
E VDAG_04288 ATP-dependent RNA helicase eIF4A K03257 EIF4A; translation initiation factor 4A
E VDAG_09310 ATP-dependent RNA helicase FAL1 K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E VDAG_06653 eukaryotic initiation factor 4F subunit p130 K03260 EIF4G; translation initiation factor 4G
E VDAG_06686 WD repeat-containing protein 5B K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E VDAG_03152 mRNA export factor mex67 K14284 NXF; nuclear RNA export factor
E VDAG_00890 histone deacetylase clr3 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E VDAG_06639 mRNA-decapping enzyme K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E VDAG_09875 ATP-dependent RNA helicase DHH1 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E VDAG_10416 hypothetical protein K12615 EDC3; enhancer of mRNA-decapping protein 3
E VDAG_09905 hypothetical protein K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E VDAG_06800 hypothetical protein K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E VDAG_09635 hypothetical protein K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E VDAG_00629 small nuclear ribonucleoprotein K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E VDAG_08426 hypothetical protein K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E VDAG_03265 LSM domain-containing protein K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E VDAG_10320 hypothetical protein K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E VDAG_03107 hypothetical protein K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E VDAG_01384 5'-3' exoribonuclease K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E VDAG_04077 5'-3' exoribonuclease K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
D Other 5'-3' decay factors
E VDAG_08015 DCS2 protein K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
C 3'-5' decay
D Core exosome factors
E VDAG_01364 3'-5' exoribonuclease CSL4 K07573 CSL4; exosome complex component CSL4
E VDAG_08545 exosome complex exonuclease RRP4 K03679 RRP4; exosome complex component RRP4
E VDAG_00315 exosome complex exonuclease RRP40 K03681 RRP40; exosome complex component RRP40
E VDAG_06223 exosome complex exonuclease RRP41 K11600 RRP41; exosome complex component RRP41
E VDAG_03009 hypothetical protein K12590 RRP46; exosome complex component RRP46
E VDAG_10427 3' exoribonuclease family protein K12587 MTR3; exosome complex component MTR3
E VDAG_00912 exosome complex exonuclease RRP42 K12589 RRP42; exosome complex component RRP42
E VDAG_02662 exosome complex exonuclease RRP43 K12586 RRP43; exosome complex component RRP43
E VDAG_05803 exosome complex exonuclease RRP45 K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E VDAG_08783 mitotic control protein dis3 K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E VDAG_00844 hypothetical protein K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E VDAG_02477 exosome-associated family protein K12592 C1D; exosome complex protein LRP1
E VDAG_00172 DEAD/DEAH box helicase K20103 DDX60; ATP-dependent RNA helicase DDX60 [EC:5.6.2.7]
D TRAMP complex
E VDAG_07308 Poly(A) RNA polymerase cid14 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E VDAG_07754 ATP-dependent RNA helicase DOB1 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E VDAG_01641 antiviral helicase SKI2 K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E VDAG_00878 hypothetical protein K12600 SKI3; superkiller protein 3
E VDAG_07486 meiotic recombination protein rec14 K12601 SKI8; superkiller protein 8
D Ccr4-NOT complex
E VDAG_04694 glucose-repressible alcohol dehydrogenase transcriptional effector K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E VDAG_07472 hypothetical protein K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E VDAG_00656 hypothetical protein K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E VDAG_00097 CCR4-NOT transcription complex subunit 3 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E VDAG_05474 general negative regulator of transcription subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E VDAG_06391 CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E VDAG_10107 cell differentiation protein rcd1 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E VDAG_09965 CCR4-Not complex subunit Caf16 K12608 CAF16; CCR4-NOT complex subunit CAF16
E VDAG_03260 SKG3 protein K12609 CAF120; CCR4-NOT transcriptional complex subunit CAF120
D Pan complex
E VDAG_07430 PAB-dependent poly(A)-specific ribonuclease subunit PAN2 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E VDAG_10321 PAB-dependent poly(A)-specific ribonuclease subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E VDAG_06565 hypothetical protein K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E VDAG_08015 DCS2 protein K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E VDAG_06395 hypothetical protein K26109 NRDE2; nuclear exosome regulator NRDE2
E VDAG_06286 VTS1 protein K27407 VTS1; RNA-binding protein VTS1
C Other degradation factors
D RNases
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E VDAG_08884 ribonuclease K03685 rnc; ribonuclease III [EC:3.1.26.3]
E VDAG_03327 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E VDAG_03029 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E VDAG_01887 6-phosphofructokinase type C K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E VDAG_00442 heat shock protein SSC1 K04043 dnaK; molecular chaperone DnaK
E VDAG_08898 heat shock protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E VDAG_08545 exosome complex exonuclease RRP4 K03679 RRP4; exosome complex component RRP4
E VDAG_01364 3'-5' exoribonuclease CSL4 K07573 CSL4; exosome complex component CSL4
D Cofactors
E VDAG_06223 exosome complex exonuclease RRP41 K11600 RRP41; exosome complex component RRP41
E VDAG_00912 exosome complex exonuclease RRP42 K12589 RRP42; exosome complex component RRP42
D Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: July 24, 2025