+E Transcription factors KO #

  Transcription Factors - Vibrio diabolicus

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D AL552_01825 AraC family transcriptional regulator K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator D AL552_15325 AraC family transcriptional regulator K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA D AL552_12660 AraC family transcriptional regulator K19693 tfoS; AraC family transcriptional regulator, chitin signaling transcriptional activator D AL552_04925 AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator D AL552_03475 AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator D AL552_15260 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator D AL552_09160 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator D AL552_02995 3-methyladenine DNA glycosylase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] C LysR family D AL552_11765 transcriptional regulator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D AL552_11465 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D AL552_11505 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D AL552_01535 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D AL552_24805 HTH-type transcriptional activator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D AL552_10955 transcriptional activator NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D AL552_11260 hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D AL552_22605 DNA-binding transcriptional regulator OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D AL552_21680 transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D AL552_10165 transcriptional regulator LeuO K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon D AL552_19495 LysR family transcriptional regulator K10918 aphB; LysR family transcriptional regulator, transcriptional activator AphB D AL552_13800 HTH-type transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D AL552_00425 LysR family transcriptional regulator K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase D AL552_03015 LysR family transcriptional regulator K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family D AL552_20575 DeoR/GlpR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D AL552_16690 DeoR/GlpR transcriptional regulator K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator C LacI family D AL552_06190 transcriptional repressor PurR K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AL552_20605 DNA-binding transcriptional regulator GalS K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AL552_09680 DNA-binding transcriptional regulator CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D AL552_06780 catabolite repressor/activator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D AL552_04980 transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor D AL552_11840 treR; HTH-type transcriptional regulator TreR K03485 treR; LacI family transcriptional regulator, trehalose operon repressor D AL552_13535 HTH-type transcriptional repressor PurR K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor D AL552_24940 LacI family DNA-binding transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D AL552_20650 transcriptional regulator EbgR K12113 ebgR; LacI family transcriptional regulator, ebg operon repressor C GntR family D AL552_14625 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D AL552_05790 GntR family transcriptional regulator K11922 mngR; GntR family transcriptional regulator, mannosyl-D-glycerate transport/metabolism system repressor D AL552_19000 fatty acid metabolism transcriptional regulator FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D AL552_21240 pyruvate dehydrogenase complex transcriptional repressor PdhR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D AL552_05220 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D AL552_05685 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D AL552_10190 GntR family transcriptional regulator K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator C TetR/AcrR family D AL552_06035 transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D AL552_24830 TetR family transcriptional regulator K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor D AL552_09260 nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator D AL552_21220 LuxR family transcriptional regulator K10913 hapR; TetR/AcrR family transcriptional regulator, hemagglutinin/protease regulatory protein D AL552_01415 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D AL552_15445 TetR/AcrR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D AL552_23750 HTH-type transcriptional repressor FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator C Lrp/AsnC family D AL552_25005 transcriptional regulator AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D AL552_03355 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D AL552_13815 leucine-responsive transcriptional regulator Lrp K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D AL552_02840 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D AL552_05335 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D AL552_04795 AsnC family transcriptional regulator K15782 doeX; Lrp/AsnC family transcriptional regulator, regulator of ectoine-degradation genes D AL552_13150 Lrp/AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D AL552_22350 helix-turn-helix transcriptional regulator K04333 csgD; LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein D AL552_04630 helix-turn-helix transcriptional regulator K20918 vpsT; LuxR family transcriptional regulator, positive regulator of biofilm formation D AL552_03790 HTH-type transcriptional regulator MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein C MarR family D AL552_05310 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D AL552_20895 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D AL552_03465 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D AL552_06235 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D AL552_23380 zntR; Zn(2+)-responsive transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA D AL552_01635 soxR; redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR D AL552_04500 helix-turn-helix-type transcriptional regulator K21972 bluR; MerR family transcriptional regulator, repressor of blue light- and temperature-responsive genes C Fur family D AL552_12555 ferric iron uptake transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D AL552_22495 transcriptional regulator Zur K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family C CRP/FNR family D AL552_22810 cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D AL552_18485 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D AL552_15965 transcriptional regulator FNR K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D AL552_11325 Fe-S cluster assembly transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D AL552_22870 HTH-type transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D AL552_23900 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D AL552_08555 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D AL552_00920 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D AL552_10960 ArsR family transcriptional regulator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator C XRE family C PadR family D AL552_22660 PadR family transcriptional regulator K10917 aphA; PadR family transcriptional regulator, regulatory protein AphA C Other families D AL552_03245 MurR/RpiR family transcriptional regulator K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor D AL552_14425 transcriptional regulator HexR K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D AL552_23525 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D AL552_23290 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D AL552_11075 trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D AL552_07025 SgrR family transcriptional regulator K11925 sgrR; SgrR family transcriptional regulator D AL552_01725 transporter K11925 sgrR; SgrR family transcriptional regulator D AL552_00265 helix-turn-helix domain-containing protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D AL552_19845 sigma-54-dependent Fis family transcriptional regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D AL552_10890 sigma-54-dependent Fis family transcriptional regulator K20919 vpsR; sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation D AL552_15300 sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D AL552_14220 nitric oxide reductase transcriptional regulator NorR K12266 norR; anaerobic nitric oxide reductase transcription regulator D AL552_02720 CdaR family transcriptional regulator K02647 cdaR; carbohydrate diacid regulator B Ribbon-helix-helix C CopG family C Other families D AL552_03320 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D AL552_01160 transcriptional repressor RcnR K23240 rcnR; FrmR/RcnR family transcriptional regulator, repressor of rcnA expression D AL552_20385 protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D AL552_03195 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D AL552_24535 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D AL552_08240 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D AL552_12515 transcription/translation regulatory transformer protein RfaH K05785 rfaH; transcriptional antiterminator RfaH D AL552_10035 transcriptional regulator ArgR K03402 argR; transcriptional regulator of arginine metabolism D AL552_12530 transcriptional regulator K02565 nagC; N-acetylglucosamine repressor D AL552_18820 ROK family protein K15545 mlc; transcriptional regulator of PTS gene D AL552_10255 MltR family transcriptional regulator K02562 mtlR; mannitol operon repressor D AL552_02640 tenA; thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D AL552_18055 transcriptional regulator TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D AL552_23375 transcriptional regulator CadC K03765 cadC; transcriptional activator of cad operon D AL552_19945 glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor D AL552_14135 pspF; phage shock protein operon transcriptional activator K03974 pspF; psp operon transcriptional activator D AL552_14150 pspC; PspC domain-containing protein K03973 pspC; phage shock protein C D AL552_10250 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR K05880 dhaR; transcriptional activator for dhaKLM operon D AL552_07565 nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase D AL552_23650 transcriptional regulator K07733 alpA; prophage regulatory protein D AL552_24425 AlpA family phage regulatory protein K07733 alpA; prophage regulatory protein D AL552_09225 transcriptional regulator K07733 alpA; prophage regulatory protein D AL552_21765 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator D AL552_21155 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D AL552_11695 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D AL552_11680 Crl family RNA polymerase assembly factor K11926 crl; sigma factor-binding protein Crl ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0