+E Transcription factors KO
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Transcription Factors - Vibrio antiquarius
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D VEA_001833 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C GRAS
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D VEA_000715 ethanolamine operon regulatory protein K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator
D VEA_003334 type III secretion thermoregulatory protein (LcrF,VirF,transcription regulation of virulence plasmid) K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA
D VEA_004105 signal transduction histidine kinase K19693 tfoS; AraC family transcriptional regulator, chitin signaling transcriptional activator
D VEA_000611 AraC-type DNA-binding domain-containing protein K13652 K13652; AraC family transcriptional regulator
D VEA_001047 transcriptional regulator AraC family K13652 K13652; AraC family transcriptional regulator
D VEA_003322 hypothetical protein K13653 K13653; AraC family transcriptional regulator
D VEA_000955 3-methyladenine DNA glycosylase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D VEA_004316 transcriptional regulator LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D VEA_004252 glycine cleavage system transcriptional activator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D VEA_001290 transcriptional regulator LysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D VEA_001984 HTH-type transcriptional regulator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D VEA_003070 transcriptional activator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D VEA_004424 transcriptional activator NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D VEA_002320 Transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D VEA_004373 transcriptional regulator LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D VEA_002477 chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D VEA_001651 transcriptional regulator LysR family K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D VEA_002880 putative transcriptional regulator LysR family K10918 aphB; LysR family transcriptional regulator, transcriptional activator AphB
D VEA_003883 regulatory protein CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D VEA_000959 transcriptional regulator LysR family K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
D VEA_002674 glycerol-3-phosphate regulon repressor DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D VEA_003595 transcriptional repressor of aga operon K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator
C LacI family
D VEA_002664 LacI-family regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D VEA_002667 Galactose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D VEA_000337 ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D VEA_001746 transcriptional (co)regulator CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D VEA_000221 fructose repressor FruR LacI family K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D VEA_000600 sucrose operon repressor ScrR LacI family K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D VEA_004236 trehalose operon transcriptional repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D VEA_003941 transcriptional regulator LacI family protein K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D VEA_001964 gluconate utilization system Gnt-I transcriptional repressor K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D VEA_002659 beta-D-galactosidase transcriptional repressor K12113 ebgR; LacI family transcriptional regulator, ebg operon repressor
C GntR family
D VEA_003719 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D VEA_000412 transcriptional regulator of succinyl CoA synthetase operon K11922 mngR; GntR family transcriptional regulator, mannosyl-D-glycerate transport/metabolism system repressor
D VEA_002979 transcriptional regulator for fatty acid degradation FadR GntR family K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D VEA_002549 transcriptional repressor for pyruvate dehydrogenase complex K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D VEA_000463 transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D VEA_000554 transcriptional regulator GntR family/aminotransferase class-i K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D VEA_001646 transcriptional regulator LuxZ K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator
C TetR/AcrR family
D VEA_000366 HTH-type transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D VEA_001979 transcriptional regulator TetR family K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor
D VEA_001824 transcriptional regulator K05501 slmA; TetR/AcrR family transcriptional regulator
D VEA_002553 quorum-sensing regulator of virulence HapR K10913 hapR; TetR/AcrR family transcriptional regulator, hemagglutinin/protease regulatory protein
D VEA_001314 transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D VEA_002153 unsaturated fatty acid biosythesis repressor FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
C Lrp/AsnC family
D VEA_001951 transcriptional regulator AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D VEA_003880 leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D VEA_001024 PutR transcriptional activator of PutA and PutP K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D VEA_000530 transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D VEA_000908 transcriptional regulator AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D VEA_000635 transcriptional regulator AsnC family K15782 doeX; Lrp/AsnC family transcriptional regulator, regulator of ectoine-degradation genes
D VEA_004016 putative HTH-type transcriptional regulator ybaO K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D VEA_001275 transcriptional regulator VpsT K20918 vpsT; LuxR family transcriptional regulator, positive regulator of biofilm formation
D VEA_001102 transcriptional activator of maltose regulon MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D VEA_000535 putative transcription regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D VEA_002615 transcriptional regulator MarR family K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D VEA_001045 organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D VEA_000328 HTH-type transcriptional regulator CueR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D VEA_002186 zinc-responsive transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D VEA_000675 redox-sensitive transcriptional activator soxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D VEA_001251 transcriptional regulator MerR family K21972 bluR; MerR family transcriptional regulator, repressor of blue light- and temperature-responsive genes
C Fur family
D VEA_004126 ferric uptake regulation protein FUR K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D VEA_002343 zinc uptake regulation protein ZUR K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D VEA_000924 transcriptional regulator KdgR KDG operon repressor K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D VEA_002279 cyclic AMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D VEA_003082 transcriptional regulator Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D VEA_003475 fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D VEA_004361 iron-sulfur cluster regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D VEA_002267 nitrite-sensitive transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D VEA_002125 transcriptional regulator ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D VEA_004423 transcriptional activator HlyU K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
C XRE family
C PadR family
D VEA_002309 predicted transcriptional regulator K10917 aphA; PadR family transcriptional regulator, regulatory protein AphA
C Other families
D VEA_001002 transcriptional regulator RpiR family K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor
D VEA_003760 glucose repressor HexR for Entner-Doudoroff pathway RpiR family K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D VEA_002163 biotin-protein ligase/biotin operon repressor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D VEA_002193 NA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D VEA_004400 Trp operon repressor-like protein K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D VEA_000178 SgrR sugar-phosphate stress transcriptional activator of SgrS small RNA K11925 sgrR; SgrR family transcriptional regulator
D VEA_000690 ABC-type uncharacterized transport system component K11925 sgrR; SgrR family transcriptional regulator
D VEA_003247 putative transcription regulator protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D VEA_001517 predicted transcriptional regulator K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D VEA_002811 flagellar regulatory protein FleQ K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D VEA_003850 putative transcription regulator TxR K18219 txr; sigma-54 dependent transcriptional regulator, tetracycline resistant transcriptional regulator
D VEA_004436 transcriptional regulator VpsR K20919 vpsR; sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation
D VEA_003329 sigma-54 dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D VEA_000451 transcriptional regulator K11914 sfa2; sigma-54 dependent transcriptional regulator
D VEA_001300 anaerobic nitric oxide reductase transcription regulator NorR K12266 norR; anaerobic nitric oxide reductase transcription regulator
D VEA_003798 anaerobic nitric oxide reductase transcription regulator NorR K12266 norR; anaerobic nitric oxide reductase transcription regulator
D VEA_000884 sugar diacid utilization regulator SdaR K02647 cdaR; carbohydrate diacid regulator
B Ribbon-helix-helix
C CopG family
C Other families
D VEA_002304 methionine repressor MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D VEA_001017 proline dehydrogenase (Proline oxidase)/delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D VEA_001364 hypothetical protein K23240 rcnR; FrmR/RcnR family transcriptional regulator, repressor of rcnA expression
D VEA_002706 cell division protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D VEA_000994 chromosome (plasmid) partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D VEA_002022 chromosome (plasmid) partitioning protein ParB/stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D VEA_004133 transcriptional activator RfaH K05785 rfaH; transcriptional antiterminator RfaH
D VEA_001677 arginine pathway regulatory protein ArgR repressor of arg regulon K03402 argR; transcriptional regulator of arginine metabolism
D VEA_004130 N-acetylglucosamine-6P-responsive transcriptional repressor NagC ROK family K02565 nagC; N-acetylglucosamine repressor
D VEA_003012 Mlc transcriptional repressor of MalT (the transcriptional activator of maltose regulon) and manXYZ operon K15545 mlc; transcriptional regulator of PTS gene
D VEA_001634 mannitol operon repressor K02562 mtlR; mannitol operon repressor
D VEA_000867 thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D VEA_003165 transcriptional repressor protein TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D VEA_002187 transcriptional activator of cad operon K03765 cadC; transcriptional activator of cad operon
D VEA_002792 glycine cleavage system transcriptional antiactivator GcvR K03567 gcvR; glycine cleavage system transcriptional repressor
D VEA_003815 Psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator
D VEA_003812 phage shock protein C K03973 pspC; phage shock protein C
D VEA_001635 glycerol metabolism operon regulatory protein K05880 dhaR; transcriptional activator for dhaKLM operon
D VEA_000067 regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase
D VEA_004310 phage transcriptional regulator AlpA K07733 alpA; prophage regulatory protein
D VEA_001834 predicted transcriptional regulator K07733 alpA; prophage regulatory protein
D VEA_003245 predicted transcriptional regulator K07733 alpA; prophage regulatory protein
D VEA_002461 hypothetical protein K07735 algH; putative transcriptional regulator
D VEA_002565 C4-type zinc finger protein, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor
D VEA_004266 ribonucleotide reductase transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D VEA_004269 transcriptional regulator Crl K11926 crl; sigma factor-binding protein Crl
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 29, 2024
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Classification taken and modified from TRANSFAC 7.0