+E Transcription factors KO #

  Transcription Factors - Vibrio antiquarius

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D VEA_001833 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D VEA_000715 ethanolamine operon regulatory protein K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator D VEA_003334 type III secretion thermoregulatory protein (LcrF,VirF,transcription regulation of virulence plasmid) K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA D VEA_004105 signal transduction histidine kinase K19693 tfoS; AraC family transcriptional regulator, chitin signaling transcriptional activator D VEA_000611 AraC-type DNA-binding domain-containing protein K13652 K13652; AraC family transcriptional regulator D VEA_001047 transcriptional regulator AraC family K13652 K13652; AraC family transcriptional regulator D VEA_003322 hypothetical protein K13653 K13653; AraC family transcriptional regulator D VEA_000955 3-methyladenine DNA glycosylase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] C LysR family D VEA_004316 transcriptional regulator LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D VEA_004252 glycine cleavage system transcriptional activator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D VEA_001290 transcriptional regulator LysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D VEA_001984 HTH-type transcriptional regulator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D VEA_003070 transcriptional activator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D VEA_004424 transcriptional activator NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D VEA_002320 Transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D VEA_004373 transcriptional regulator LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D VEA_002477 chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D VEA_001651 transcriptional regulator LysR family K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon D VEA_002880 putative transcriptional regulator LysR family K10918 aphB; LysR family transcriptional regulator, transcriptional activator AphB D VEA_003883 regulatory protein CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D VEA_000959 transcriptional regulator LysR family K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family D VEA_002674 glycerol-3-phosphate regulon repressor DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D VEA_003595 transcriptional repressor of aga operon K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator C LacI family D VEA_002664 LacI-family regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D VEA_002667 Galactose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D VEA_000337 ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D VEA_001746 transcriptional (co)regulator CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D VEA_000221 fructose repressor FruR LacI family K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D VEA_000600 sucrose operon repressor ScrR LacI family K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor D VEA_004236 trehalose operon transcriptional repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor D VEA_003941 transcriptional regulator LacI family protein K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor D VEA_001964 gluconate utilization system Gnt-I transcriptional repressor K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D VEA_002659 beta-D-galactosidase transcriptional repressor K12113 ebgR; LacI family transcriptional regulator, ebg operon repressor C GntR family D VEA_003719 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D VEA_000412 transcriptional regulator of succinyl CoA synthetase operon K11922 mngR; GntR family transcriptional regulator, mannosyl-D-glycerate transport/metabolism system repressor D VEA_002979 transcriptional regulator for fatty acid degradation FadR GntR family K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D VEA_002549 transcriptional repressor for pyruvate dehydrogenase complex K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D VEA_000463 transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D VEA_000554 transcriptional regulator GntR family/aminotransferase class-i K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D VEA_001646 transcriptional regulator LuxZ K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator C TetR/AcrR family D VEA_000366 HTH-type transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D VEA_001979 transcriptional regulator TetR family K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor D VEA_001824 transcriptional regulator K05501 slmA; TetR/AcrR family transcriptional regulator D VEA_002553 quorum-sensing regulator of virulence HapR K10913 hapR; TetR/AcrR family transcriptional regulator, hemagglutinin/protease regulatory protein D VEA_001314 transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D VEA_002153 unsaturated fatty acid biosythesis repressor FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator C Lrp/AsnC family D VEA_001951 transcriptional regulator AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D VEA_003880 leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D VEA_001024 PutR transcriptional activator of PutA and PutP K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D VEA_000530 transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D VEA_000908 transcriptional regulator AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D VEA_000635 transcriptional regulator AsnC family K15782 doeX; Lrp/AsnC family transcriptional regulator, regulator of ectoine-degradation genes D VEA_004016 putative HTH-type transcriptional regulator ybaO K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D VEA_001275 transcriptional regulator VpsT K20918 vpsT; LuxR family transcriptional regulator, positive regulator of biofilm formation D VEA_001102 transcriptional activator of maltose regulon MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein C MarR family D VEA_000535 putative transcription regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D VEA_002615 transcriptional regulator MarR family K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D VEA_001045 organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D VEA_000328 HTH-type transcriptional regulator CueR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D VEA_002186 zinc-responsive transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA D VEA_000675 redox-sensitive transcriptional activator soxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR D VEA_001251 transcriptional regulator MerR family K21972 bluR; MerR family transcriptional regulator, repressor of blue light- and temperature-responsive genes C Fur family D VEA_004126 ferric uptake regulation protein FUR K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D VEA_002343 zinc uptake regulation protein ZUR K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D VEA_000924 transcriptional regulator KdgR KDG operon repressor K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor C CRP/FNR family D VEA_002279 cyclic AMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D VEA_003082 transcriptional regulator Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D VEA_003475 fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D VEA_004361 iron-sulfur cluster regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D VEA_002267 nitrite-sensitive transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D VEA_002125 transcriptional regulator ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D VEA_004423 transcriptional activator HlyU K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator C XRE family C PadR family D VEA_002309 predicted transcriptional regulator K10917 aphA; PadR family transcriptional regulator, regulatory protein AphA C Other families D VEA_001002 transcriptional regulator RpiR family K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor D VEA_003760 glucose repressor HexR for Entner-Doudoroff pathway RpiR family K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D VEA_002163 biotin-protein ligase/biotin operon repressor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D VEA_002193 NA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D VEA_004400 Trp operon repressor-like protein K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D VEA_000178 SgrR sugar-phosphate stress transcriptional activator of SgrS small RNA K11925 sgrR; SgrR family transcriptional regulator D VEA_000690 ABC-type uncharacterized transport system component K11925 sgrR; SgrR family transcriptional regulator D VEA_003247 putative transcription regulator protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D VEA_001517 predicted transcriptional regulator K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D VEA_002811 flagellar regulatory protein FleQ K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D VEA_003850 putative transcription regulator TxR K18219 txr; sigma-54 dependent transcriptional regulator, tetracycline resistant transcriptional regulator D VEA_004436 transcriptional regulator VpsR K20919 vpsR; sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation D VEA_003329 sigma-54 dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D VEA_000451 transcriptional regulator K11914 sfa2; sigma-54 dependent transcriptional regulator D VEA_001300 anaerobic nitric oxide reductase transcription regulator NorR K12266 norR; anaerobic nitric oxide reductase transcription regulator D VEA_003798 anaerobic nitric oxide reductase transcription regulator NorR K12266 norR; anaerobic nitric oxide reductase transcription regulator D VEA_000884 sugar diacid utilization regulator SdaR K02647 cdaR; carbohydrate diacid regulator B Ribbon-helix-helix C CopG family C Other families D VEA_002304 methionine repressor MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D VEA_001017 proline dehydrogenase (Proline oxidase)/delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D VEA_001364 hypothetical protein K23240 rcnR; FrmR/RcnR family transcriptional regulator, repressor of rcnA expression D VEA_002706 cell division protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D VEA_000994 chromosome (plasmid) partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D VEA_002022 chromosome (plasmid) partitioning protein ParB/stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D VEA_004133 transcriptional activator RfaH K05785 rfaH; transcriptional antiterminator RfaH D VEA_001677 arginine pathway regulatory protein ArgR repressor of arg regulon K03402 argR; transcriptional regulator of arginine metabolism D VEA_004130 N-acetylglucosamine-6P-responsive transcriptional repressor NagC ROK family K02565 nagC; N-acetylglucosamine repressor D VEA_003012 Mlc transcriptional repressor of MalT (the transcriptional activator of maltose regulon) and manXYZ operon K15545 mlc; transcriptional regulator of PTS gene D VEA_001634 mannitol operon repressor K02562 mtlR; mannitol operon repressor D VEA_000867 thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D VEA_003165 transcriptional repressor protein TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D VEA_002187 transcriptional activator of cad operon K03765 cadC; transcriptional activator of cad operon D VEA_002792 glycine cleavage system transcriptional antiactivator GcvR K03567 gcvR; glycine cleavage system transcriptional repressor D VEA_003815 Psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator D VEA_003812 phage shock protein C K03973 pspC; phage shock protein C D VEA_001635 glycerol metabolism operon regulatory protein K05880 dhaR; transcriptional activator for dhaKLM operon D VEA_000067 regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase D VEA_004310 phage transcriptional regulator AlpA K07733 alpA; prophage regulatory protein D VEA_001834 predicted transcriptional regulator K07733 alpA; prophage regulatory protein D VEA_003245 predicted transcriptional regulator K07733 alpA; prophage regulatory protein D VEA_002461 hypothetical protein K07735 algH; putative transcriptional regulator D VEA_002565 C4-type zinc finger protein, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor D VEA_004266 ribonucleotide reductase transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D VEA_004269 transcriptional regulator Crl K11926 crl; sigma factor-binding protein Crl ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 29, 2024 #
Classification taken and modified from TRANSFAC 7.0