+D GENES KO
#
KEGG Orthology (KO) - Vescimonas fastidiosa
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:vfa00010]
D MM35RIKEN_05800 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D MM35RIKEN_17090 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D MM35RIKEN_19810 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D MM35RIKEN_10430 pfkA; ATP-dependent 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D MM35RIKEN_06430 pfp; pyrophosphate--fructose 6-phosphate 1-phosphotransferase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D MM35RIKEN_06420 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D MM35RIKEN_13580 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D MM35RIKEN_19520 gapA; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D MM35RIKEN_21930 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D MM35RIKEN_13590 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D MM35RIKEN_13570 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D MM35RIKEN_17100 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D MM35RIKEN_16180 pdhC; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D MM35RIKEN_16170 acoL; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D MM35RIKEN_17990 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D MM35RIKEN_06680 nifJ1; pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D MM35RIKEN_12850 nifJ2; pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D MM35RIKEN_18150 pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D MM35RIKEN_06370 3-methyl-2-oxobutanoate dehydrogenase subunit VorB K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D MM35RIKEN_06360 MFS transporter K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D MM35RIKEN_16980 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D MM35RIKEN_00420 pgm2; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D MM35RIKEN_04310 pckA; phosphoenolpyruvate carboxykinase [ATP] K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
C 00020 Citrate cycle (TCA cycle) [PATH:vfa00020]
D MM35RIKEN_07460 citrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D MM35RIKEN_11970 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D MM35RIKEN_16170 acoL; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D MM35RIKEN_17990 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D MM35RIKEN_06370 3-methyl-2-oxobutanoate dehydrogenase subunit VorB K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D MM35RIKEN_06360 MFS transporter K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D MM35RIKEN_06350 2-oxoacid:ferredoxin oxidoreductase subunit gamma K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D MM35RIKEN_06380 2-oxoacid:acceptor oxidoreductase subunit delta K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D MM35RIKEN_09030 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D MM35RIKEN_04310 pckA; phosphoenolpyruvate carboxykinase [ATP] K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D MM35RIKEN_16180 pdhC; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D MM35RIKEN_06680 nifJ1; pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D MM35RIKEN_12850 nifJ2; pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D MM35RIKEN_18150 pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:vfa00030]
D MM35RIKEN_19810 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D MM35RIKEN_10870 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D MM35RIKEN_06180 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D MM35RIKEN_06190 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D MM35RIKEN_14970 rpiB2; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D MM35RIKEN_04590 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D MM35RIKEN_00420 pgm2; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D MM35RIKEN_13610 prsA; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D MM35RIKEN_12950 2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D MM35RIKEN_12940 2-dehydro-3-deoxygluconokinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D MM35RIKEN_06420 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D MM35RIKEN_10430 pfkA; ATP-dependent 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D MM35RIKEN_06430 pfp; pyrophosphate--fructose 6-phosphate 1-phosphotransferase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C 00040 Pentose and glucuronate interconversions
D MM35RIKEN_10870 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
C 00051 Fructose and mannose metabolism [PATH:vfa00051]
D MM35RIKEN_10430 pfkA; ATP-dependent 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D MM35RIKEN_06430 pfp; pyrophosphate--fructose 6-phosphate 1-phosphotransferase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D MM35RIKEN_06420 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D MM35RIKEN_13580 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D MM35RIKEN_14970 rpiB2; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
C 00052 Galactose metabolism [PATH:vfa00052]
D MM35RIKEN_00420 pgm2; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D MM35RIKEN_05800 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D MM35RIKEN_17090 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D MM35RIKEN_10430 pfkA; ATP-dependent 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D MM35RIKEN_06430 pfp; pyrophosphate--fructose 6-phosphate 1-phosphotransferase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C 00053 Ascorbate and aldarate metabolism
C 00500 Starch and sucrose metabolism [PATH:vfa00500]
D MM35RIKEN_23870 hypothetical protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D MM35RIKEN_10990 glucose-1-phosphate adenylyltransferase subunit GlgD K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D MM35RIKEN_11000 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D MM35RIKEN_10980 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D MM35RIKEN_11010 glgB; 1,4-alpha-glucan branching enzyme GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D MM35RIKEN_10970 glgP; alpha-1,4 glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D MM35RIKEN_04260 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D MM35RIKEN_00420 pgm2; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D MM35RIKEN_05800 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D MM35RIKEN_17090 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D MM35RIKEN_19810 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:vfa00520]
D MM35RIKEN_03560 hypothetical protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D MM35RIKEN_01670 glmS; glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D MM35RIKEN_06530 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D MM35RIKEN_21300 glucose-1-phosphate thymidylyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D MM35RIKEN_00460 murAB; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D MM35RIKEN_01050 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D MM35RIKEN_05810 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D MM35RIKEN_12300 wbtE; UDP-N-acetyl-D-galactosamine dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D MM35RIKEN_05800 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D MM35RIKEN_17090 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D MM35RIKEN_00420 pgm2; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D MM35RIKEN_19810 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D MM35RIKEN_10990 glucose-1-phosphate adenylyltransferase subunit GlgD K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D MM35RIKEN_11000 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:vfa00620]
D MM35RIKEN_06680 nifJ1; pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D MM35RIKEN_12850 nifJ2; pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D MM35RIKEN_18150 pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D MM35RIKEN_06370 3-methyl-2-oxobutanoate dehydrogenase subunit VorB K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D MM35RIKEN_06360 MFS transporter K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D MM35RIKEN_16180 pdhC; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D MM35RIKEN_16170 acoL; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D MM35RIKEN_17990 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D MM35RIKEN_22570 dehydrogenase, FMN-dependent K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
D MM35RIKEN_16980 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D MM35RIKEN_15910 MBL fold hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D MM35RIKEN_23120 hypothetical protein K22373 larA; lactate racemase [EC:5.1.2.1]
D MM35RIKEN_06940 oxaloacetate decarboxylase K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D MM35RIKEN_06930 hypothetical protein K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D MM35RIKEN_06910 hypothetical protein K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma
D MM35RIKEN_09030 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D MM35RIKEN_04310 pckA; phosphoenolpyruvate carboxykinase [ATP] K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D MM35RIKEN_17100 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D MM35RIKEN_13650 thl; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:vfa00630]
D MM35RIKEN_07460 citrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D MM35RIKEN_13650 thl; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D MM35RIKEN_00370 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D MM35RIKEN_00410 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D MM35RIKEN_10570 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D MM35RIKEN_12460 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D MM35RIKEN_17970 gcvP1; putative glycine dehydrogenase (decarboxylating) subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D MM35RIKEN_17980 gcvPB; putative glycine dehydrogenase (decarboxylating) subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D MM35RIKEN_16170 acoL; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D MM35RIKEN_17990 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D MM35RIKEN_17960 glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein
D MM35RIKEN_16230 garR; 2-hydroxy-3-oxopropionate reductase K00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60]
D MM35RIKEN_18050 glxK; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D MM35RIKEN_12950 2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
C 00640 Propanoate metabolism [PATH:vfa00640]
D MM35RIKEN_16170 acoL; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D MM35RIKEN_17990 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D MM35RIKEN_02200 bcd2; butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D MM35RIKEN_07460 citrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D MM35RIKEN_16980 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D MM35RIKEN_17480 mgsA; methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
C 00650 Butanoate metabolism [PATH:vfa00650]
D MM35RIKEN_13650 thl; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D MM35RIKEN_02190 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D MM35RIKEN_02180 enoyl-CoA hydratase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17]
D MM35RIKEN_12840 crt; short-chain-enoyl-CoA hydratase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17]
D MM35RIKEN_02200 bcd2; butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D MM35RIKEN_07300 acetyl-CoA--acetoacetyl-CoA transferase subunit alpha K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9]
D MM35RIKEN_07290 scoB; succinyl-CoA--3-ketoacid-CoA transferase K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9]
D MM35RIKEN_07530 buk; putative butyrate kinase K00929 buk; butyrate kinase [EC:2.7.2.7]
D MM35RIKEN_17140 buk1; putative butyrate kinase K00929 buk; butyrate kinase [EC:2.7.2.7]
D MM35RIKEN_06220 ptb2; phosphate butyryltransferase K00634 ptb; phosphate butyryltransferase [EC:2.3.1.19]
D MM35RIKEN_06870 ptb; phosphate butyryltransferase K00634 ptb; phosphate butyryltransferase [EC:2.3.1.19]
D MM35RIKEN_06930 hypothetical protein K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D MM35RIKEN_06920 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma
D MM35RIKEN_12830 abfD; 4-hydroxybutyryl-CoA dehydratase K14534 abfD; 4-hydroxybutyryl-CoA dehydratase / vinylacetyl-CoA-Delta-isomerase [EC:4.2.1.120 5.3.3.3]
D MM35RIKEN_06680 nifJ1; pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D MM35RIKEN_12850 nifJ2; pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D MM35RIKEN_18150 pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D MM35RIKEN_06370 3-methyl-2-oxobutanoate dehydrogenase subunit VorB K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D MM35RIKEN_06360 MFS transporter K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D MM35RIKEN_03430 3-hydroxybutyrate dehydrogenase K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30]
C 00660 C5-Branched dibasic acid metabolism
C 00562 Inositol phosphate metabolism
D MM35RIKEN_13580 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:vfa00190]
D MM35RIKEN_11550 NADH-quinone oxidoreductase subunit F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D MM35RIKEN_11560 ferredoxin K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D MM35RIKEN_13860 hydrogenase K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D MM35RIKEN_10750 hypothetical protein K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D MM35RIKEN_10730 atpD; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D MM35RIKEN_10740 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D MM35RIKEN_10720 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D MM35RIKEN_10790 atpB; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D MM35RIKEN_10760 hypothetical protein K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D MM35RIKEN_10770 atpE; ATP synthase subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D MM35RIKEN_11480 atpA; V-type ATP synthase alpha chain K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1]
D MM35RIKEN_11490 atpB; V-type ATP synthase beta chain K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B
D MM35RIKEN_11500 atpD; ATP synthase subunit D K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D
D MM35RIKEN_11460 hypothetical protein K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E
D MM35RIKEN_11510 atpI; V-type ATP synthase subunit I K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I
D MM35RIKEN_11520 ATP synthase subunit K K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K
D MM35RIKEN_17850 inorganic pyrophosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:vfa00710]
D MM35RIKEN_13590 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D MM35RIKEN_19520 gapA; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D MM35RIKEN_21930 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D MM35RIKEN_06420 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D MM35RIKEN_06180 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D MM35RIKEN_06190 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D MM35RIKEN_14970 rpiB2; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D MM35RIKEN_13580 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D MM35RIKEN_10870 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D MM35RIKEN_04310 pckA; phosphoenolpyruvate carboxykinase [ATP] K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D MM35RIKEN_17100 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
C 00720 Other carbon fixation pathways [PATH:vfa00720]
D MM35RIKEN_06680 nifJ1; pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D MM35RIKEN_12850 nifJ2; pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D MM35RIKEN_18150 pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D MM35RIKEN_17100 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D MM35RIKEN_09030 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D MM35RIKEN_12830 abfD; 4-hydroxybutyryl-CoA dehydratase K14534 abfD; 4-hydroxybutyryl-CoA dehydratase / vinylacetyl-CoA-Delta-isomerase [EC:4.2.1.120 5.3.3.3]
D MM35RIKEN_13650 thl; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D MM35RIKEN_06370 3-methyl-2-oxobutanoate dehydrogenase subunit VorB K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D MM35RIKEN_06360 MFS transporter K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D MM35RIKEN_06350 2-oxoacid:ferredoxin oxidoreductase subunit gamma K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D MM35RIKEN_06380 2-oxoacid:acceptor oxidoreductase subunit delta K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D MM35RIKEN_11970 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D MM35RIKEN_01520 formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D MM35RIKEN_01510 folD; bifunctional protein FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
C 00680 Methane metabolism [PATH:vfa00680]
D MM35RIKEN_12460 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D MM35RIKEN_06420 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D MM35RIKEN_10430 pfkA; ATP-dependent 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D MM35RIKEN_06430 pfp; pyrophosphate--fructose 6-phosphate 1-phosphotransferase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D MM35RIKEN_13570 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D MM35RIKEN_10710 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D MM35RIKEN_10700 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00910 Nitrogen metabolism [PATH:vfa00910]
D MM35RIKEN_04770 hcp; hydroxylamine reductase K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D MM35RIKEN_07060 gdh; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D MM35RIKEN_00370 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D MM35RIKEN_00410 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D MM35RIKEN_10570 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D MM35RIKEN_00810 aspB; oxidoreductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D MM35RIKEN_09830 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00920 Sulfur metabolism [PATH:vfa00920]
D MM35RIKEN_18470 DHH family phosphoesterase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
D MM35RIKEN_13550 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D MM35RIKEN_00340 cysK; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:vfa00061]
D MM35RIKEN_21740 acp; acyl carrier protein K02078 acpP; acyl carrier protein
D MM35RIKEN_16080 fabG; 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D MM35RIKEN_13780 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:vfa00071]
D MM35RIKEN_13650 thl; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D MM35RIKEN_02200 bcd2; butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D MM35RIKEN_13780 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00074 Mycolic acid biosynthesis
D MM35RIKEN_21740 acp; acyl carrier protein K02078 acpP; acyl carrier protein
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis [PATH:vfa00121]
D MM35RIKEN_11690 choloylglycine hydrolase K01442 cbh; choloylglycine hydrolase [EC:3.5.1.24]
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:vfa00561]
D MM35RIKEN_18050 glxK; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D MM35RIKEN_21540 glpK2; glycerol kinase 2 K00864 glpK; glycerol kinase [EC:2.7.1.30]
D MM35RIKEN_21730 plsX; phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D MM35RIKEN_09680 plsY2; glycerol-3-phosphate acyltransferase 2 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D MM35RIKEN_05270 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D MM35RIKEN_08120 hypothetical protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D MM35RIKEN_15670 diacylglycerol kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D MM35RIKEN_19550 glycosyl transferase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315]
C 00564 Glycerophospholipid metabolism [PATH:vfa00564]
D MM35RIKEN_15500 glpA; FAD/NAD(P)-binding oxidoreductase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D MM35RIKEN_09680 plsY2; glycerol-3-phosphate acyltransferase 2 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D MM35RIKEN_05270 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D MM35RIKEN_08120 hypothetical protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D MM35RIKEN_15670 diacylglycerol kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D MM35RIKEN_02050 hypothetical protein K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D MM35RIKEN_08110 cdsA; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D MM35RIKEN_19490 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D MM35RIKEN_02150 cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D MM35RIKEN_09530 cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D MM35RIKEN_08140 pgsA; CDP-alcohol phosphatidyltransferase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism [PATH:vfa00600]
D MM35RIKEN_03560 hypothetical protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:vfa00230]
D MM35RIKEN_19690 ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D MM35RIKEN_00420 pgm2; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D MM35RIKEN_13610 prsA; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D MM35RIKEN_23220 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D MM35RIKEN_07070 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D MM35RIKEN_08900 acid sugar phosphatase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D MM35RIKEN_01830 pupG; purine nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D MM35RIKEN_04600 deoD; purine nucleoside phosphorylase DeoD-type K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D MM35RIKEN_21060 laccase domain protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D MM35RIKEN_18690 hprT; hypoxanthine-guanine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D MM35RIKEN_00540 non-canonical purine NTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D MM35RIKEN_07730 xpt; xanthine phosphoribosyltransferase K03816 xpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D MM35RIKEN_07740 guaA; GMP synthase [glutamine-hydrolyzing] K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D MM35RIKEN_05380 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D MM35RIKEN_07010 nrdD; anaerobic ribonucleoside triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D MM35RIKEN_08930 5'-deoxynucleotidase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D MM35RIKEN_15890 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D MM35RIKEN_13830 GTP pyrophosphokinase family protein K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]
D MM35RIKEN_23620 GTP pyrophosphokinase K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]
D MM35RIKEN_23210 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D MM35RIKEN_07080 ade; adenine deaminase K01486 ade; adenine deaminase [EC:3.5.4.2]
D MM35RIKEN_18930 metallophosphoesterase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D MM35RIKEN_19210 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D MM35RIKEN_05770 hypothetical protein K06928 NTPCR; nucleoside-triphosphatase [EC:3.6.1.15]
D MM35RIKEN_15940 hypothetical protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D MM35RIKEN_09830 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00240 Pyrimidine metabolism [PATH:vfa00240]
D MM35RIKEN_21790 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D MM35RIKEN_14170 hypothetical protein K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D MM35RIKEN_02020 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D MM35RIKEN_15940 hypothetical protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D MM35RIKEN_17590 maf; septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D MM35RIKEN_11780 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D MM35RIKEN_05260 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D MM35RIKEN_23020 hypothetical protein K00876 udk; uridine kinase [EC:2.7.1.48]
D MM35RIKEN_08900 acid sugar phosphatase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D MM35RIKEN_15620 udp; uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D MM35RIKEN_11900 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D MM35RIKEN_18930 metallophosphoesterase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D MM35RIKEN_13750 carbohydrate kinase K16328 psuK; pseudouridine kinase [EC:2.7.1.83]
D MM35RIKEN_13740 psuG; pseudouridine-5'-phosphate glycosidase K16329 psuG; pseudouridylate synthase [EC:4.2.1.70]
D MM35RIKEN_18580 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D MM35RIKEN_07010 nrdD; anaerobic ribonucleoside triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D MM35RIKEN_08930 5'-deoxynucleotidase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D MM35RIKEN_15190 cytidine deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D MM35RIKEN_07220 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D MM35RIKEN_17600 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D MM35RIKEN_14930 tdk; thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D MM35RIKEN_21030 thyA1; thymidylate synthase 1 K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D MM35RIKEN_19680 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:vfa00250]
D MM35RIKEN_11330 aspB; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D MM35RIKEN_06880 aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D MM35RIKEN_11650 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D MM35RIKEN_18960 aspG; L-asparaginase 1 K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D MM35RIKEN_06890 asnA; aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D MM35RIKEN_11770 asnB; asparagine synthetase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D MM35RIKEN_12970 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D MM35RIKEN_23210 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D MM35RIKEN_23220 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D MM35RIKEN_00810 aspB; oxidoreductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D MM35RIKEN_07060 gdh; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D MM35RIKEN_00370 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D MM35RIKEN_00410 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D MM35RIKEN_10570 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D MM35RIKEN_01670 glmS; glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
C 00260 Glycine, serine and threonine metabolism [PATH:vfa00260]
D MM35RIKEN_13690 lysC; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D MM35RIKEN_13680 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D MM35RIKEN_13810 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D MM35RIKEN_13710 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D MM35RIKEN_09770 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D MM35RIKEN_13700 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D MM35RIKEN_04330 amino acid lyase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D MM35RIKEN_12460 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D MM35RIKEN_18050 glxK; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D MM35RIKEN_13570 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D MM35RIKEN_10710 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D MM35RIKEN_10700 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D MM35RIKEN_17970 gcvP1; putative glycine dehydrogenase (decarboxylating) subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D MM35RIKEN_17980 gcvPB; putative glycine dehydrogenase (decarboxylating) subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D MM35RIKEN_16170 acoL; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D MM35RIKEN_17990 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D MM35RIKEN_17960 glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein
D MM35RIKEN_11030 L-serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D MM35RIKEN_12870 serine dehydratase subunit alpha K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D MM35RIKEN_12880 hypothetical protein K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
C 00270 Cysteine and methionine metabolism [PATH:vfa00270]
D MM35RIKEN_13550 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D MM35RIKEN_00340 cysK; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D MM35RIKEN_11290 metK; S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D MM35RIKEN_21440 mtnN; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D MM35RIKEN_21060 laccase domain protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D MM35RIKEN_13180 dcm; DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D MM35RIKEN_13190 dcm; DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D MM35RIKEN_21450 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D MM35RIKEN_13690 lysC; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D MM35RIKEN_13680 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D MM35RIKEN_13810 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D MM35RIKEN_13710 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D MM35RIKEN_11330 aspB; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D MM35RIKEN_06880 aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D MM35RIKEN_16980 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D MM35RIKEN_11030 L-serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D MM35RIKEN_12870 serine dehydratase subunit alpha K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D MM35RIKEN_12880 hypothetical protein K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D MM35RIKEN_10710 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D MM35RIKEN_10700 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:vfa00280]
D MM35RIKEN_16170 acoL; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D MM35RIKEN_17990 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D MM35RIKEN_02200 bcd2; butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D MM35RIKEN_13650 thl; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:vfa00290]
D MM35RIKEN_04670 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
C 00300 Lysine biosynthesis [PATH:vfa00300]
D MM35RIKEN_13810 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D MM35RIKEN_13690 lysC; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D MM35RIKEN_13680 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D MM35RIKEN_03470 dapA4; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D MM35RIKEN_03520 aminotransferase K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]
D MM35RIKEN_07140 aminotransferase K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]
D MM35RIKEN_22490 aspartate aminotransferase K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]
D MM35RIKEN_01010 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D MM35RIKEN_21040 murE2; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D MM35RIKEN_11850 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:vfa00310]
D MM35RIKEN_16170 acoL; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D MM35RIKEN_17990 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D MM35RIKEN_13650 thl; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D MM35RIKEN_07340 kamA; L-lysine 2,3-aminomutase K01843 kamA; lysine 2,3-aminomutase [EC:5.4.3.2]
D MM35RIKEN_13670 hypothetical protein K01843 kamA; lysine 2,3-aminomutase [EC:5.4.3.2]
D MM35RIKEN_07330 L-beta-lysine 5,6-aminomutase alpha subunit K01844 kamD; beta-lysine 5,6-aminomutase alpha subunit [EC:5.4.3.3]
D MM35RIKEN_07320 L-beta-lysine 5,6-aminomutase beta subunit K18011 kamE; beta-lysine 5,6-aminomutase beta subunit [EC:5.4.3.3]
D MM35RIKEN_07350 kdd; L-erythro-3,5-diaminohexanoate dehydrogenase K18012 kdd; L-erythro-3,5-diaminohexanoate dehydrogenase [EC:1.4.1.11]
D MM35RIKEN_07360 kce; 3-keto-5-aminohexanoate cleavage enzyme K18013 kce; 3-keto-5-aminohexanoate cleavage enzyme [EC:2.3.1.247]
D MM35RIKEN_07370 kal; 3-aminobutyryl-CoA ammonia lyase K18014 kal; 3-aminobutyryl-CoA ammonia-lyase [EC:4.3.1.14]
D MM35RIKEN_07300 acetyl-CoA--acetoacetyl-CoA transferase subunit alpha K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9]
D MM35RIKEN_07290 scoB; succinyl-CoA--3-ketoacid-CoA transferase K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9]
C 00220 Arginine biosynthesis [PATH:vfa00220]
D MM35RIKEN_00370 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D MM35RIKEN_00410 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D MM35RIKEN_10570 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D MM35RIKEN_09830 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D MM35RIKEN_07060 gdh; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D MM35RIKEN_11330 aspB; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D MM35RIKEN_06880 aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
C 00330 Arginine and proline metabolism [PATH:vfa00330]
D MM35RIKEN_07630 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D MM35RIKEN_01100 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D MM35RIKEN_01090 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D MM35RIKEN_11330 aspB; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D MM35RIKEN_06880 aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism
D MM35RIKEN_09510 hisK; putative histidinol-phosphatase K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15]
D MM35RIKEN_14980 histidinol phosphate phosphatase K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15]
C 00350 Tyrosine metabolism [PATH:vfa00350]
D MM35RIKEN_11330 aspB; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D MM35RIKEN_06880 aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D MM35RIKEN_12860 2-keto-3-deoxy-L-rhamnonate aldolase K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52]
C 00360 Phenylalanine metabolism [PATH:vfa00360]
D MM35RIKEN_02190 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D MM35RIKEN_11330 aspB; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D MM35RIKEN_06880 aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
C 00380 Tryptophan metabolism [PATH:vfa00380]
D MM35RIKEN_16170 acoL; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D MM35RIKEN_17990 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D MM35RIKEN_13650 thl; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D MM35RIKEN_12190 tpl; tyrosine phenol-lyase K01667 tnaA; tryptophanase [EC:4.1.99.1]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:vfa00400]
D MM35RIKEN_14070 3-deoxy-7-phosphoheptulonate synthase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D MM35RIKEN_14080 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D MM35RIKEN_14130 aroQ; 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D MM35RIKEN_14090 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D MM35RIKEN_14100 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D MM35RIKEN_14110 hypothetical protein K04516 AROA1; chorismate mutase [EC:5.4.99.5]
D MM35RIKEN_06590 hypothetical protein K06209 pheB; chorismate mutase [EC:5.4.99.5]
D MM35RIKEN_11330 aspB; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D MM35RIKEN_06880 aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:vfa00410]
D MM35RIKEN_19680 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D MM35RIKEN_02200 bcd2; butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
C 00430 Taurine and hypotaurine metabolism
D MM35RIKEN_12970 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:vfa00450]
D MM35RIKEN_24040 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D MM35RIKEN_11930 putative selenate reductase subunit YgfK K12527 ygfK; putative selenate reductase [EC:1.97.1.9]
D MM35RIKEN_03320 selenate reductase subunit YgfN K12528 xdhD; putative selenate reductase molybdopterin-binding subunit
D MM35RIKEN_03310 hypothetical protein K12529 ygfM; putative selenate reductase FAD-binding subunit
D MM35RIKEN_23010 selenide, water dikinase SelD K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D MM35RIKEN_17230 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:vfa00460]
D MM35RIKEN_18960 aspG; L-asparaginase 1 K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D MM35RIKEN_06890 asnA; aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D MM35RIKEN_12460 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:vfa00470]
D MM35RIKEN_01620 alr1; alanine racemase 1 K01775 alr; alanine racemase [EC:5.1.1.1]
D MM35RIKEN_11860 ddlA; D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D MM35RIKEN_18880 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D MM35RIKEN_06710 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D MM35RIKEN_11650 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D MM35RIKEN_07330 L-beta-lysine 5,6-aminomutase alpha subunit K01844 kamD; beta-lysine 5,6-aminomutase alpha subunit [EC:5.4.3.3]
D MM35RIKEN_07320 L-beta-lysine 5,6-aminomutase beta subunit K18011 kamE; beta-lysine 5,6-aminomutase beta subunit [EC:5.4.3.3]
D MM35RIKEN_15430 hypothetical protein K21898 orr; ornithine racemase [EC:5.1.1.12]
D MM35RIKEN_15870 diaminopimelate epimerase K01780 cntK; histidine racemase [EC:5.1.1.24]
C 00480 Glutathione metabolism [PATH:vfa00480]
D MM35RIKEN_04410 pepD; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D MM35RIKEN_11970 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:vfa00511]
D MM35RIKEN_03560 hypothetical protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00540 Lipopolysaccharide biosynthesis
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:vfa00541]
D MM35RIKEN_21300 glucose-1-phosphate thymidylyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D MM35RIKEN_12300 wbtE; UDP-N-acetyl-D-galactosamine dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
C 00550 Peptidoglycan biosynthesis [PATH:vfa00550]
D MM35RIKEN_00460 murAB; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D MM35RIKEN_01050 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D MM35RIKEN_05810 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D MM35RIKEN_06620 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D MM35RIKEN_06710 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D MM35RIKEN_01010 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D MM35RIKEN_21040 murE2; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D MM35RIKEN_11860 ddlA; D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D MM35RIKEN_11850 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D MM35RIKEN_02040 uppS; isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D MM35RIKEN_12380 uppP3; undecaprenyl-diphosphatase 3 K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D MM35RIKEN_12210 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D MM35RIKEN_01020 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D MM35RIKEN_01040 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D MM35RIKEN_07570 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D MM35RIKEN_17560 hypothetical protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D MM35RIKEN_01000 stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein)
D MM35RIKEN_13970 penicillin-binding protein K05364 pbpA; penicillin-binding protein A
D MM35RIKEN_05060 dacF; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D MM35RIKEN_05220 hypothetical protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D MM35RIKEN_19820 dacF; D-alanyl-D-alanine carboxypeptidase DacF K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D MM35RIKEN_09710 hypothetical protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D MM35RIKEN_15580 UDP-N-acetylmuramyl peptide synthase K23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
D MM35RIKEN_15570 glutamine amidotransferase K07009 gatD; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
C 00552 Teichoic acid biosynthesis [PATH:vfa00552]
D MM35RIKEN_12380 uppP3; undecaprenyl-diphosphatase 3 K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D MM35RIKEN_12210 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D MM35RIKEN_19550 glycosyl transferase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315]
D MM35RIKEN_01430 licD2; phosphorylcholine transferase LicD K07271 licD; lipopolysaccharide cholinephosphotransferase [EC:2.7.8.-]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:vfa00543]
D MM35RIKEN_13550 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:vfa00730]
D MM35RIKEN_03170 thiK; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D MM35RIKEN_08950 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D MM35RIKEN_16130 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D MM35RIKEN_18130 thiI; putative tRNA sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D MM35RIKEN_06060 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D MM35RIKEN_03190 thiM2; hydroxyethylthiazole kinase 2 K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D MM35RIKEN_03180 thiE2; thiamine-phosphate synthase 2 K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D MM35RIKEN_05770 hypothetical protein K06928 NTPCR; nucleoside-triphosphatase [EC:3.6.1.15]
D MM35RIKEN_05470 rsgA; putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D MM35RIKEN_02300 thiamine pyrophosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2]
D MM35RIKEN_19210 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D MM35RIKEN_03160 aminopyrimidine aminohydrolase K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
C 00740 Riboflavin metabolism [PATH:vfa00740]
D MM35RIKEN_18500 ribC; riboflavin biosynthesis protein K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D MM35RIKEN_03190 thiM2; hydroxyethylthiazole kinase 2 K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D MM35RIKEN_19690 ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
C 00750 Vitamin B6 metabolism [PATH:vfa00750]
D MM35RIKEN_16020 pyridoxal kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D MM35RIKEN_10700 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D MM35RIKEN_09770 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D MM35RIKEN_13700 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:vfa00760]
D MM35RIKEN_09540 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D MM35RIKEN_01830 pupG; purine nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D MM35RIKEN_04600 deoD; purine nucleoside phosphorylase DeoD-type K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D MM35RIKEN_08900 acid sugar phosphatase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D MM35RIKEN_00560 nadD; nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D MM35RIKEN_15940 hypothetical protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D MM35RIKEN_17420 NAD(+) synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D MM35RIKEN_07470 cobB; NAD-dependent protein deacetylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D MM35RIKEN_06080 hypothetical protein K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D MM35RIKEN_03290 hypothetical protein K20446 ndhS; nicotinate dehydrogenase small FeS subunit [EC:1.17.1.5]
C 00770 Pantothenate and CoA biosynthesis [PATH:vfa00770]
D MM35RIKEN_04670 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D MM35RIKEN_00820 coaX; type III pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D MM35RIKEN_06450 coaX; type III pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D MM35RIKEN_15940 hypothetical protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D MM35RIKEN_00930 coaD; phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D MM35RIKEN_04960 hypothetical protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D MM35RIKEN_19680 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
C 00780 Biotin metabolism [PATH:vfa00780]
D MM35RIKEN_16080 fabG; 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D MM35RIKEN_01990 2-amino-3-ketobutyrate CoA ligase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D MM35RIKEN_00660 birA; bifunctional ligase/repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:vfa00785]
D MM35RIKEN_23090 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D MM35RIKEN_16160 lplA1; lipoate--protein ligase K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D MM35RIKEN_23070 lipoate--protein ligase K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D MM35RIKEN_23100 lplA; lipoate--protein ligase K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D MM35RIKEN_16170 acoL; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D MM35RIKEN_17990 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D MM35RIKEN_16180 pdhC; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D MM35RIKEN_17970 gcvP1; putative glycine dehydrogenase (decarboxylating) subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D MM35RIKEN_17980 gcvPB; putative glycine dehydrogenase (decarboxylating) subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D MM35RIKEN_17960 glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:vfa00790]
D MM35RIKEN_21020 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D MM35RIKEN_13890 MBL fold hydrolase K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105]
D MM35RIKEN_03270 hypothetical protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
C 00670 One carbon pool by folate [PATH:vfa00670]
D MM35RIKEN_21020 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D MM35RIKEN_01520 formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D MM35RIKEN_01510 folD; bifunctional protein FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D MM35RIKEN_12460 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D MM35RIKEN_05420 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D MM35RIKEN_21030 thyA1; thymidylate synthase 1 K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D MM35RIKEN_18000 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:vfa00860]
D MM35RIKEN_10550 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D MM35RIKEN_07310 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D MM35RIKEN_19320 hypothetical protein K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D MM35RIKEN_19330 hypothetical protein K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D MM35RIKEN_19310 cobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:vfa00900]
D MM35RIKEN_06060 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D MM35RIKEN_02060 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D MM35RIKEN_10370 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D MM35RIKEN_05550 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D MM35RIKEN_10360 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D MM35RIKEN_02080 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D MM35RIKEN_05280 bifunctional 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D MM35RIKEN_13650 thl; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D MM35RIKEN_06030 geranylgeranyl pyrophosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D MM35RIKEN_02040 uppS; isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
D MM35RIKEN_08030 hypothetical protein K10212 K10212; glycosyl-4,4'-diaponeurosporenoate acyltransferase [EC:2.3.1.-]
D MM35RIKEN_19560 hypothetical protein K10212 K10212; glycosyl-4,4'-diaponeurosporenoate acyltransferase [EC:2.3.1.-]
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D MM35RIKEN_06180 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D MM35RIKEN_06190 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis
C 01054 Nonribosomal peptide structures [PATH:vfa01054]
D MM35RIKEN_11650 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:vfa00332]
D MM35RIKEN_01100 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D MM35RIKEN_01090 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:vfa00261]
D MM35RIKEN_13690 lysC; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D MM35RIKEN_13680 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D MM35RIKEN_03470 dapA4; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:vfa00521]
D MM35RIKEN_05800 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D MM35RIKEN_17090 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D MM35RIKEN_00420 pgm2; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D MM35RIKEN_05800 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D MM35RIKEN_17090 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis
C 00401 Novobiocin biosynthesis
D MM35RIKEN_11330 aspB; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D MM35RIKEN_06880 aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
C 00333 Prodigiosin biosynthesis
D MM35RIKEN_16080 fabG; 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D MM35RIKEN_21740 acp; acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites
D MM35RIKEN_11290 metK; S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
C 00997 Biosynthesis of various other secondary metabolites
D MM35RIKEN_15430 hypothetical protein K21898 orr; ornithine racemase [EC:5.1.1.12]
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:vfa00362]
D MM35RIKEN_06930 hypothetical protein K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D MM35RIKEN_06920 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma
D MM35RIKEN_02190 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D MM35RIKEN_13650 thl; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation
D MM35RIKEN_07300 acetyl-CoA--acetoacetyl-CoA transferase subunit alpha K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9]
D MM35RIKEN_07290 scoB; succinyl-CoA--3-ketoacid-CoA transferase K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation
D MM35RIKEN_04180 noncanonical pyrimidine nucleotidase, YjjG family protein K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
C 00361 Chlorocyclohexane and chlorobenzene degradation
D MM35RIKEN_04180 noncanonical pyrimidine nucleotidase, YjjG family protein K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation [PATH:vfa00791]
D MM35RIKEN_14260 8-oxoguanine deaminase K03382 atzB; hydroxydechloroatrazine ethylaminohydrolase [EC:3.5.4.43]
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:vfa03020]
D MM35RIKEN_19640 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D MM35RIKEN_19630 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D MM35RIKEN_19280 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D MM35RIKEN_05390 hypothetical protein K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:vfa03010]
D MM35RIKEN_05280 bifunctional 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D MM35RIKEN_08580 hypothetical protein K02945 RP-S1; small subunit ribosomal protein S1
D MM35RIKEN_23360 hypothetical protein K02945 RP-S1; small subunit ribosomal protein S1
D MM35RIKEN_03250 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D MM35RIKEN_19060 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D MM35RIKEN_19270 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D MM35RIKEN_19170 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D MM35RIKEN_18610 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D MM35RIKEN_21350 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D MM35RIKEN_19140 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D MM35RIKEN_21150 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D MM35RIKEN_18990 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D MM35RIKEN_19260 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D MM35RIKEN_21340 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D MM35RIKEN_19250 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D MM35RIKEN_19130 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D MM35RIKEN_17800 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D MM35RIKEN_08720 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D MM35RIKEN_19090 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D MM35RIKEN_18630 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D MM35RIKEN_19040 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D MM35RIKEN_17750 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D MM35RIKEN_07700 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D MM35RIKEN_08860 hypothetical protein K02978 RP-S27e; small subunit ribosomal protein S27e
D MM35RIKEN_01750 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D MM35RIKEN_19030 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D MM35RIKEN_19000 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D MM35RIKEN_19010 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D MM35RIKEN_19120 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D MM35RIKEN_19150 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D MM35RIKEN_01770 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D MM35RIKEN_18660 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D MM35RIKEN_01760 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D MM35RIKEN_01740 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D MM35RIKEN_21160 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D MM35RIKEN_19100 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D MM35RIKEN_19190 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D MM35RIKEN_19070 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D MM35RIKEN_19290 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D MM35RIKEN_19160 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D MM35RIKEN_07090 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D MM35RIKEN_02130 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D MM35RIKEN_21460 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D MM35RIKEN_19050 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D MM35RIKEN_19020 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D MM35RIKEN_19110 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D MM35RIKEN_21480 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D MM35RIKEN_05780 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D MM35RIKEN_19080 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D MM35RIKEN_19180 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D MM35RIKEN_04490 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D MM35RIKEN_09640 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D MM35RIKEN_01710 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D MM35RIKEN_17320 hypothetical protein K02914 RP-L34; large subunit ribosomal protein L34
D MM35RIKEN_02120 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D MM35RIKEN_21330 rplGB; ribosome-associated protein L7Ae-like K07590 RP-L7A; large subunit ribosomal protein L7A
D MM35RIKEN_r00030 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:vfa00970]
D MM35RIKEN_t00040 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D MM35RIKEN_t00320 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D MM35RIKEN_t00430 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D MM35RIKEN_t00200 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D MM35RIKEN_t00010 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D MM35RIKEN_t00020 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D MM35RIKEN_t00250 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D MM35RIKEN_t00180 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D MM35RIKEN_t00360 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D MM35RIKEN_t00150 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D MM35RIKEN_t00330 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D MM35RIKEN_t00450 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D MM35RIKEN_t00070 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D MM35RIKEN_t00400 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D MM35RIKEN_t00160 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D MM35RIKEN_t00470 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D MM35RIKEN_t00240 tRNA-His K14226 tRNA-His; tRNA His
D MM35RIKEN_t00050 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D MM35RIKEN_t00310 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D MM35RIKEN_t00420 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D MM35RIKEN_t00060 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D MM35RIKEN_t00410 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D MM35RIKEN_t00290 tRNA-Met K14230 tRNA-Met; tRNA Met
D MM35RIKEN_t00380 tRNA-Met K14230 tRNA-Met; tRNA Met
D MM35RIKEN_t00460 tRNA-Met K14230 tRNA-Met; tRNA Met
D MM35RIKEN_t00170 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D MM35RIKEN_t00350 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D MM35RIKEN_t00490 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D MM35RIKEN_t00370 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D MM35RIKEN_t00500 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D MM35RIKEN_t00190 tRNA-Val K14237 tRNA-Val; tRNA Val
D MM35RIKEN_t00510 tRNA-Val K14237 tRNA-Val; tRNA Val
D MM35RIKEN_10550 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D MM35RIKEN_01290 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D MM35RIKEN_06980 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D MM35RIKEN_17450 alanyl-tRNA editing protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D MM35RIKEN_17460 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D MM35RIKEN_13760 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D MM35RIKEN_17730 glyS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D MM35RIKEN_00620 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D MM35RIKEN_17520 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D MM35RIKEN_19500 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D MM35RIKEN_17230 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D MM35RIKEN_05420 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D MM35RIKEN_05580 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D MM35RIKEN_07710 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D MM35RIKEN_18100 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D MM35RIKEN_21650 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D MM35RIKEN_18860 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D MM35RIKEN_18970 proS2; proline--tRNA ligase 2 K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D MM35RIKEN_17470 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D MM35RIKEN_01590 pheS; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D MM35RIKEN_01580 pheT; phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D MM35RIKEN_06110 tyrS1; tyrosine--tRNA ligase 1 K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D MM35RIKEN_10540 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:vfa03060]
D MM35RIKEN_19200 secY; protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D MM35RIKEN_01720 hypothetical protein K03073 secE; preprotein translocase subunit SecE
D MM35RIKEN_21890 hypothetical protein K03075 secG; preprotein translocase subunit SecG
D MM35RIKEN_06140 hypothetical protein K03210 yajC; preprotein translocase subunit YajC
D MM35RIKEN_17290 hypothetical protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D MM35RIKEN_21070 secA; protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D MM35RIKEN_08730 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D MM35RIKEN_00510 hypothetical protein K03110 ftsY; fused signal recognition particle receptor
D MM35RIKEN_18700 hypothetical protein K03100 lepB; signal peptidase I [EC:3.4.21.89]
D MM35RIKEN_23790 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D MM35RIKEN_16090 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D MM35RIKEN_01180 hypothetical protein K13280 SEC11; signal peptidase I [EC:3.4.21.89]
D MM35RIKEN_10590 hypothetical protein K13280 SEC11; signal peptidase I [EC:3.4.21.89]
D MM35RIKEN_10620 sipW; signal peptidase I W K13280 SEC11; signal peptidase I [EC:3.4.21.89]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:vfa04122]
D MM35RIKEN_08950 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D MM35RIKEN_16130 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D MM35RIKEN_01800 hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D MM35RIKEN_21910 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D MM35RIKEN_18130 thiI; putative tRNA sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
C 03050 Proteasome
C 03018 RNA degradation [PATH:vfa03018]
D MM35RIKEN_17790 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D MM35RIKEN_10960 hypothetical protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D MM35RIKEN_18920 rny; ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-]
D MM35RIKEN_18640 rnj; ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-]
D MM35RIKEN_10430 pfkA; ATP-dependent 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D MM35RIKEN_15000 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D MM35RIKEN_15100 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D MM35RIKEN_17030 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:vfa03030]
D MM35RIKEN_05860 dnaE; DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D MM35RIKEN_02090 polC; DNA polymerase III PolC-type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D MM35RIKEN_21860 hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D MM35RIKEN_17110 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D MM35RIKEN_01330 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D MM35RIKEN_17340 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D MM35RIKEN_09250 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D MM35RIKEN_18670 dnaC; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D MM35RIKEN_06640 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D MM35RIKEN_08410 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D MM35RIKEN_16420 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D MM35RIKEN_18620 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D MM35RIKEN_23480 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D MM35RIKEN_17410 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D MM35RIKEN_05670 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D MM35RIKEN_13920 polA; DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
D MM35RIKEN_06690 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D MM35RIKEN_07840 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D MM35RIKEN_24150 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:vfa03410]
D MM35RIKEN_04560 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D MM35RIKEN_14940 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D MM35RIKEN_04200 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D MM35RIKEN_21510 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D MM35RIKEN_17250 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D MM35RIKEN_13920 polA; DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
D MM35RIKEN_15880 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D MM35RIKEN_06690 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D MM35RIKEN_07840 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D MM35RIKEN_24150 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:vfa03420]
D MM35RIKEN_13630 mfd; transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D MM35RIKEN_11390 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
D MM35RIKEN_11450 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
D MM35RIKEN_18210 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C
D MM35RIKEN_05650 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D MM35RIKEN_13920 polA; DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
D MM35RIKEN_06690 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D MM35RIKEN_07840 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D MM35RIKEN_24150 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:vfa03430]
D MM35RIKEN_17010 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D MM35RIKEN_07380 endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2
D MM35RIKEN_18390 mutS2; endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2
D MM35RIKEN_17000 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D MM35RIKEN_05650 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D MM35RIKEN_06010 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D MM35RIKEN_06020 hypothetical protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D MM35RIKEN_15880 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D MM35RIKEN_08410 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D MM35RIKEN_16420 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D MM35RIKEN_18620 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D MM35RIKEN_23480 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D MM35RIKEN_05860 dnaE; DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D MM35RIKEN_02090 polC; DNA polymerase III PolC-type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D MM35RIKEN_17340 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D MM35RIKEN_21860 hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D MM35RIKEN_01330 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D MM35RIKEN_17110 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D MM35RIKEN_06690 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D MM35RIKEN_07840 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D MM35RIKEN_24150 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:vfa03440]
D MM35RIKEN_15880 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D MM35RIKEN_08410 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D MM35RIKEN_16420 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D MM35RIKEN_18620 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D MM35RIKEN_23480 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D MM35RIKEN_17360 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D MM35RIKEN_18370 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D MM35RIKEN_10860 recR; recombination protein RecR K06187 recR; recombination protein RecR
D MM35RIKEN_19460 DNA recombination/repair protein RecA K03553 recA; recombination protein RecA
D MM35RIKEN_13920 polA; DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
D MM35RIKEN_06550 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D MM35RIKEN_06540 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D MM35RIKEN_06560 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D MM35RIKEN_18220 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D MM35RIKEN_07790 recD2; ATP-dependent RecD-like DNA helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D MM35RIKEN_11370 recD2; ATP-dependent RecD-like DNA helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D MM35RIKEN_24210 recD2; ATP-dependent RecD-like DNA helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D MM35RIKEN_05860 dnaE; DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D MM35RIKEN_02090 polC; DNA polymerase III PolC-type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D MM35RIKEN_17340 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D MM35RIKEN_21860 hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D MM35RIKEN_01330 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D MM35RIKEN_17110 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D MM35RIKEN_05400 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03272 Virion - Hepatitis viruses
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:vfa02010]
D MM35RIKEN_03130 ABC transporter substrate-binding protein K15598 thiY; putative hydroxymethylpyrimidine transport system substrate-binding protein
D MM35RIKEN_03140 ABC transporter permease K15599 thiX; putative hydroxymethylpyrimidine transport system permease protein
D MM35RIKEN_03150 ABC transporter ATP-binding protein K15600 thiZ; putative hydroxymethylpyrimidine transport system ATP-binding protein
D MM35RIKEN_09580 potD; spermidine/putrescine ABC transporter substrate-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D MM35RIKEN_09590 spermidine/putrescine ABC transporter permease K11070 potC; spermidine/putrescine transport system permease protein
D MM35RIKEN_09600 potB; spermidine/putrescine ABC transporter permease K11071 potB; spermidine/putrescine transport system permease protein
D MM35RIKEN_09610 spermidine/putrescine ABC transporter ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D MM35RIKEN_04610 membrane protein K07335 bmpA; basic membrane protein A and related proteins
D MM35RIKEN_09840 hypothetical protein K07335 bmpA; basic membrane protein A and related proteins
D MM35RIKEN_14310 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins
D MM35RIKEN_04630 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein
D MM35RIKEN_09870 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein
D MM35RIKEN_14300 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein
D MM35RIKEN_04640 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein
D MM35RIKEN_09880 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein
D MM35RIKEN_14290 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein
D MM35RIKEN_04620 heme ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D MM35RIKEN_09860 ABC transporter K23537 nupA; general nucleoside transport system ATP-binding protein
D MM35RIKEN_14320 ABC transporter K23537 nupA; general nucleoside transport system ATP-binding protein
D MM35RIKEN_13520 pstS; phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D MM35RIKEN_13510 pstC; phosphate transport system permease protein K02037 pstC; phosphate transport system permease protein
D MM35RIKEN_13500 phosphate transport system permease protein PstA K02038 pstA; phosphate transport system permease protein
D MM35RIKEN_13490 pstB; phosphate import ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D MM35RIKEN_19620 peptide ABC transporter ATP-binding protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D MM35RIKEN_10460 hypothetical protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D MM35RIKEN_23140 amino acid ABC transporter K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D MM35RIKEN_10470 amino acid ABC transporter permease K17077 artQ; arginine/lysine/histidine transport system permease protein
D MM35RIKEN_23150 amino acid ABC transporter permease K17077 artQ; arginine/lysine/histidine transport system permease protein
D MM35RIKEN_10480 gltQ; glutamate ABC transporter ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D MM35RIKEN_23160 glnQ; glutamine ABC transporter ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D MM35RIKEN_03400 hypothetical protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D MM35RIKEN_18720 branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D MM35RIKEN_03360 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D MM35RIKEN_18730 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D MM35RIKEN_03370 livM; branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D MM35RIKEN_18740 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D MM35RIKEN_03380 hypothetical protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D MM35RIKEN_18750 hypothetical protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D MM35RIKEN_03390 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D MM35RIKEN_18760 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D MM35RIKEN_15410 hypothetical protein K02073 metQ; D-methionine transport system substrate-binding protein
D MM35RIKEN_15390 ABC transporter permease K02072 metI; D-methionine transport system permease protein
D MM35RIKEN_15400 metN; methionine import ATP-binding protein MetN K02071 metN; D-methionine transport system ATP-binding protein
D MM35RIKEN_10950 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D MM35RIKEN_15690 acdA; periplasmic divalent manganese/zinc-binding lipoprotein K09815 znuA; zinc transport system substrate-binding protein
D MM35RIKEN_15710 ABC transporter K09816 znuB; zinc transport system permease protein
D MM35RIKEN_15700 zinc ABC transporter ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D MM35RIKEN_00650 bioY; biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component
D MM35RIKEN_01930 hypothetical protein K16785 ecfT; energy-coupling factor transport system permease protein
D MM35RIKEN_01960 cobalt transporter K16785 ecfT; energy-coupling factor transport system permease protein
D MM35RIKEN_03020 membrane protein K16785 ecfT; energy-coupling factor transport system permease protein
D MM35RIKEN_04110 ecfT; energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein
D MM35RIKEN_04090 ecfA; energy-coupling factor transporter ATP-binding protein EcfA K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D MM35RIKEN_04100 ecfA2; energy-coupling factor transporter ATP-binding protein EcfA2 K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D MM35RIKEN_11600 ABC transporter permease K19084 braE; bacitracin transport system permease protein
D MM35RIKEN_11610 ABC transporter ATP-binding protein K19083 braD; bacitracin transport system ATP-binding protein
D MM35RIKEN_21610 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D MM35RIKEN_21600 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D MM35RIKEN_17840 hypothetical protein K16919 ytrC_D; acetoin utilization transport system permease protein
D MM35RIKEN_17830 ABC transporter ATP-binding protein K16921 ytrB; acetoin utilization transport system ATP-binding protein
D MM35RIKEN_03040 ABC transporter ATP-binding protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D MM35RIKEN_03050 multidrug ABC transporter ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D MM35RIKEN_08060 multidrug ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D MM35RIKEN_18560 ABC transporter K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D MM35RIKEN_08050 ABC transporter K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D MM35RIKEN_18570 ABC transporter K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
C 02060 Phosphotransferase system (PTS) [PATH:vfa02060]
D MM35RIKEN_18400 hypothetical protein K02784 ptsH; phosphocarrier protein HPr
C 03070 Bacterial secretion system [PATH:vfa03070]
D MM35RIKEN_01720 hypothetical protein K03073 secE; preprotein translocase subunit SecE
D MM35RIKEN_21890 hypothetical protein K03075 secG; preprotein translocase subunit SecG
D MM35RIKEN_19200 secY; protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D MM35RIKEN_06140 hypothetical protein K03210 yajC; preprotein translocase subunit YajC
D MM35RIKEN_17290 hypothetical protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D MM35RIKEN_21070 secA; protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D MM35RIKEN_00510 hypothetical protein K03110 ftsY; fused signal recognition particle receptor
D MM35RIKEN_08730 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D MM35RIKEN_02480 hypothetical protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D MM35RIKEN_08590 conjugal transfer protein TraG K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D MM35RIKEN_10190 conjugal transfer protein TraG K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D MM35RIKEN_12600 conjugal transfer protein TraG K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D MM35RIKEN_19860 conjugal transfer protein TraG K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D MM35RIKEN_20400 conjugal transfer protein TraG K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D MM35RIKEN_23350 conjugal transfer protein TraG K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:vfa02020]
D MM35RIKEN_04990 sensor histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D MM35RIKEN_04980 phoB; DNA-binding response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D MM35RIKEN_13520 pstS; phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D MM35RIKEN_15480 DNA-binding response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D MM35RIKEN_17330 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D MM35RIKEN_11600 ABC transporter permease K19084 braE; bacitracin transport system permease protein
D MM35RIKEN_11610 ABC transporter ATP-binding protein K19083 braD; bacitracin transport system ATP-binding protein
D MM35RIKEN_11580 sensor histidine kinase K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3]
D MM35RIKEN_11590 DNA-binding response regulator K19082 braR; two-component system, OmpR family, response regulator protein BraR/BceR
D MM35RIKEN_09710 hypothetical protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D MM35RIKEN_13840 spo0A; stage 0 sporulation protein A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A
D MM35RIKEN_00370 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D MM35RIKEN_00410 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D MM35RIKEN_10570 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D MM35RIKEN_07300 acetyl-CoA--acetoacetyl-CoA transferase subunit alpha K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9]
D MM35RIKEN_07290 scoB; succinyl-CoA--3-ketoacid-CoA transferase K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9]
D MM35RIKEN_13650 thl; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D MM35RIKEN_03570 protein-tyrosine-phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D MM35RIKEN_23870 hypothetical protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D MM35RIKEN_22170 hypothetical protein K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:vfa02024]
D MM35RIKEN_21450 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D MM35RIKEN_17030 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D MM35RIKEN_15480 DNA-binding response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D MM35RIKEN_03400 hypothetical protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D MM35RIKEN_18720 branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D MM35RIKEN_03360 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D MM35RIKEN_18730 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D MM35RIKEN_03370 livM; branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D MM35RIKEN_18740 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D MM35RIKEN_03380 hypothetical protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D MM35RIKEN_18750 hypothetical protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D MM35RIKEN_03390 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D MM35RIKEN_18760 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D MM35RIKEN_13780 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D MM35RIKEN_10950 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D MM35RIKEN_12930 diguanylate phosphodiesterase K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D MM35RIKEN_21050 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D MM35RIKEN_12920 peptide ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D MM35RIKEN_12910 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D MM35RIKEN_12900 dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D MM35RIKEN_12890 ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D MM35RIKEN_17290 hypothetical protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D MM35RIKEN_01720 hypothetical protein K03073 secE; preprotein translocase subunit SecE
D MM35RIKEN_21890 hypothetical protein K03075 secG; preprotein translocase subunit SecG
D MM35RIKEN_19200 secY; protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D MM35RIKEN_06140 hypothetical protein K03210 yajC; preprotein translocase subunit YajC
D MM35RIKEN_21070 secA; protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D MM35RIKEN_00510 hypothetical protein K03110 ftsY; fused signal recognition particle receptor
D MM35RIKEN_08730 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D MM35RIKEN_13840 spo0A; stage 0 sporulation protein A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
C 02040 Flagellar assembly
D MM35RIKEN_04760 hypothetical protein K03086 rpoD; RNA polymerase primary sigma factor
D MM35RIKEN_06650 sigA; RNA polymerase sigma factor SigA K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:vfa01501]
D MM35RIKEN_10950 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D MM35RIKEN_07570 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D MM35RIKEN_17560 hypothetical protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:vfa01502]
D MM35RIKEN_11860 ddlA; D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D MM35RIKEN_01620 alr1; alanine racemase 1 K01775 alr; alanine racemase [EC:5.1.1.1]
D MM35RIKEN_11850 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D MM35RIKEN_01020 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D MM35RIKEN_01040 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D MM35RIKEN_09710 hypothetical protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:vfa01503]
D MM35RIKEN_01370 hypothetical protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D MM35RIKEN_06250 N-acetylmuramoyl-L-alanine amidase CwlD K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D MM35RIKEN_18910 hypothetical protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:vfa01000]
C 01001 Protein kinases [BR:vfa01001]
D MM35RIKEN_05460 protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D MM35RIKEN_04990 sensor histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D MM35RIKEN_11580 sensor histidine kinase K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3]
D MM35RIKEN_22170 hypothetical protein K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:vfa01009]
D MM35RIKEN_10430 pfkA; ATP-dependent 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D MM35RIKEN_21320 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D MM35RIKEN_05450 protein-serine/threonine phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
C 01002 Peptidases and inhibitors [BR:vfa01002]
D MM35RIKEN_16090 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D MM35RIKEN_17760 hypothetical protein K06012 gpr; spore protease [EC:3.4.24.78]
D MM35RIKEN_06410 hypothetical protein K06383 spoIIGA; stage II sporulation protein GA (sporulation sigma-E factor processing peptidase) [EC:3.4.23.-]
D MM35RIKEN_07740 guaA; GMP synthase [glutamine-hydrolyzing] K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D MM35RIKEN_13060 peptidase C26 K07010 K07010; putative glutamine amidotransferase
D MM35RIKEN_10450 hypothetical protein K19224 lytE; peptidoglycan DL-endopeptidase LytE [EC:3.4.-.-]
D MM35RIKEN_01670 glmS; glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D MM35RIKEN_11770 asnB; asparagine synthetase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D MM35RIKEN_11690 choloylglycine hydrolase K01442 cbh; choloylglycine hydrolase [EC:3.5.1.24]
D MM35RIKEN_12610 hypothetical protein K07284 srtA; sortase A [EC:3.4.22.70]
D MM35RIKEN_23400 hypothetical protein K07284 srtA; sortase A [EC:3.4.22.70]
D MM35RIKEN_23410 hypothetical protein K07284 srtA; sortase A [EC:3.4.22.70]
D MM35RIKEN_04340 SrtB family sortase K08600 srtB; sortase B [EC:3.4.22.71]
D MM35RIKEN_09710 hypothetical protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D MM35RIKEN_05690 peptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D MM35RIKEN_07870 hypothetical protein K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D MM35RIKEN_04410 pepD; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D MM35RIKEN_19220 map1; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D MM35RIKEN_07670 aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D MM35RIKEN_10880 aminopeptidase K19689 ampS; aminopeptidase [EC:3.4.11.-]
D MM35RIKEN_08090 cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D MM35RIKEN_15060 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D MM35RIKEN_15730 cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D MM35RIKEN_18710 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D MM35RIKEN_07120 hypothetical protein K06402 spoIVFB; stage IV sporulation protein FB [EC:3.4.24.-]
D MM35RIKEN_02070 putative zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D MM35RIKEN_01170 hypothetical protein K06336 tasA; spore coat-associated protein N
D MM35RIKEN_11660 aminopeptidase K01266 dmpA; D-aminopeptidase [EC:3.4.11.19]
D MM35RIKEN_05060 dacF; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D MM35RIKEN_05220 hypothetical protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D MM35RIKEN_19820 dacF; D-alanyl-D-alanine carboxypeptidase DacF K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D MM35RIKEN_05720 clpP1; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D MM35RIKEN_05740 lon; Lon protease K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D MM35RIKEN_21880 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D MM35RIKEN_18700 hypothetical protein K03100 lepB; signal peptidase I [EC:3.4.21.89]
D MM35RIKEN_23790 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D MM35RIKEN_01180 hypothetical protein K13280 SEC11; signal peptidase I [EC:3.4.21.89]
D MM35RIKEN_10590 hypothetical protein K13280 SEC11; signal peptidase I [EC:3.4.21.89]
D MM35RIKEN_10620 sipW; signal peptidase I W K13280 SEC11; signal peptidase I [EC:3.4.21.89]
D MM35RIKEN_22340 putative peptidase Lmo0363 K05995 pepE; dipeptidase E [EC:3.4.13.21]
D MM35RIKEN_01110 hypothetical protein K06399 spoIVB; stage IV sporulation protein B [EC:3.4.21.116]
D MM35RIKEN_07190 peptidase U32 K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D MM35RIKEN_17610 hypothetical protein K08303 prtC; U32 family peptidase [EC:3.4.-.-]
C 01003 Glycosyltransferases [BR:vfa01003]
D MM35RIKEN_19550 glycosyl transferase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315]
D MM35RIKEN_10980 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D MM35RIKEN_07570 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:vfa01005]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:vfa01011]
D MM35RIKEN_00460 murAB; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D MM35RIKEN_01050 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D MM35RIKEN_05810 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D MM35RIKEN_06620 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D MM35RIKEN_06710 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D MM35RIKEN_01010 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D MM35RIKEN_21040 murE2; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D MM35RIKEN_11860 ddlA; D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D MM35RIKEN_01620 alr1; alanine racemase 1 K01775 alr; alanine racemase [EC:5.1.1.1]
D MM35RIKEN_18880 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D MM35RIKEN_01020 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D MM35RIKEN_01040 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D MM35RIKEN_12380 uppP3; undecaprenyl-diphosphatase 3 K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D MM35RIKEN_12210 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D MM35RIKEN_07570 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D MM35RIKEN_17560 hypothetical protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D MM35RIKEN_01000 stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein)
D MM35RIKEN_13970 penicillin-binding protein K05364 pbpA; penicillin-binding protein A
D MM35RIKEN_05060 dacF; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D MM35RIKEN_05220 hypothetical protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D MM35RIKEN_19820 dacF; D-alanyl-D-alanine carboxypeptidase DacF K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D MM35RIKEN_09710 hypothetical protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D MM35RIKEN_10450 hypothetical protein K19224 lytE; peptidoglycan DL-endopeptidase LytE [EC:3.4.-.-]
D MM35RIKEN_12610 hypothetical protein K07284 srtA; sortase A [EC:3.4.22.70]
D MM35RIKEN_23400 hypothetical protein K07284 srtA; sortase A [EC:3.4.22.70]
D MM35RIKEN_23410 hypothetical protein K07284 srtA; sortase A [EC:3.4.22.70]
D MM35RIKEN_04340 SrtB family sortase K08600 srtB; sortase B [EC:3.4.22.71]
D MM35RIKEN_07200 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D MM35RIKEN_21220 stage II sporulation protein D K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29]
D MM35RIKEN_01370 hypothetical protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D MM35RIKEN_06250 N-acetylmuramoyl-L-alanine amidase CwlD K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D MM35RIKEN_18910 hypothetical protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:vfa01004]
D MM35RIKEN_16080 fabG; 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D MM35RIKEN_13780 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D MM35RIKEN_21730 plsX; phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D MM35RIKEN_09680 plsY2; glycerol-3-phosphate acyltransferase 2 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D MM35RIKEN_05270 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D MM35RIKEN_08120 hypothetical protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:vfa01008]
D MM35RIKEN_11650 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01006 Prenyltransferases [BR:vfa01006]
D MM35RIKEN_06030 geranylgeranyl pyrophosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D MM35RIKEN_02040 uppS; isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D MM35RIKEN_17020 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
C 01007 Amino acid related enzymes [BR:vfa01007]
D MM35RIKEN_10550 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D MM35RIKEN_01290 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D MM35RIKEN_06110 tyrS1; tyrosine--tRNA ligase 1 K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D MM35RIKEN_10540 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D MM35RIKEN_19500 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D MM35RIKEN_18860 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D MM35RIKEN_17230 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D MM35RIKEN_18100 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D MM35RIKEN_05580 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D MM35RIKEN_07710 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D MM35RIKEN_21650 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D MM35RIKEN_17460 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D MM35RIKEN_13760 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D MM35RIKEN_17470 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D MM35RIKEN_17730 glyS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D MM35RIKEN_17520 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D MM35RIKEN_18970 proS2; proline--tRNA ligase 2 K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D MM35RIKEN_00620 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D MM35RIKEN_06980 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D MM35RIKEN_17450 alanyl-tRNA editing protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D MM35RIKEN_01590 pheS; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D MM35RIKEN_01580 pheT; phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D MM35RIKEN_11330 aspB; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D MM35RIKEN_06880 aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D MM35RIKEN_01990 2-amino-3-ketobutyrate CoA ligase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D MM35RIKEN_10700 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:vfa00194]
D MM35RIKEN_10720 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D MM35RIKEN_10730 atpD; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D MM35RIKEN_10740 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D MM35RIKEN_10750 hypothetical protein K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D MM35RIKEN_10760 hypothetical protein K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D MM35RIKEN_10770 atpE; ATP synthase subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D MM35RIKEN_10790 atpB; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:vfa03000]
D MM35RIKEN_13180 dcm; DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D MM35RIKEN_13190 dcm; DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D MM35RIKEN_21010 stage III sporulation protein D K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D MM35RIKEN_21940 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D MM35RIKEN_16270 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D MM35RIKEN_02280 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D MM35RIKEN_17820 GntR family transcriptional regulator K07979 ytrA; GntR family transcriptional regulator
D MM35RIKEN_15680 fur; transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D MM35RIKEN_10510 transcriptional repressor K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
D MM35RIKEN_24070 hypothetical protein K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
D MM35RIKEN_24260 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D MM35RIKEN_14020 Crp/Fnr family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D MM35RIKEN_00470 transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D MM35RIKEN_10000 transcriptional regulator K26993 sdpR; ArsR family transcriptional regulator, repressor of sdpIR and other operons
D MM35RIKEN_16140 DtxR family transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D MM35RIKEN_03060 DtxR family transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D MM35RIKEN_00660 birA; bifunctional ligase/repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D MM35RIKEN_21580 CdaR family transcriptional regulator K02647 cdaR; carbohydrate diacid regulator
D MM35RIKEN_04300 hypothetical protein K02019 modE; molybdate transport system regulatory protein
D MM35RIKEN_06830 rex; redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D MM35RIKEN_02610 hypothetical protein K07727 K07727; putative transcriptional regulator
D MM35RIKEN_03660 hypothetical protein K07727 K07727; putative transcriptional regulator
D MM35RIKEN_14820 hypothetical protein K07727 K07727; putative transcriptional regulator
D MM35RIKEN_19890 hypothetical protein K07727 K07727; putative transcriptional regulator
D MM35RIKEN_20650 transcriptional regulator K07727 K07727; putative transcriptional regulator
D MM35RIKEN_00240 transcriptional regulator K07729 K07729; putative transcriptional regulator
D MM35RIKEN_22710 transcriptional regulator K07729 K07729; putative transcriptional regulator
D MM35RIKEN_02340 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D MM35RIKEN_18830 abrB; AbrB family transcriptional regulator K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D MM35RIKEN_22520 stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D MM35RIKEN_02400 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D MM35RIKEN_03720 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D MM35RIKEN_10250 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D MM35RIKEN_12730 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D MM35RIKEN_13090 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D MM35RIKEN_17530 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D MM35RIKEN_17700 nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D MM35RIKEN_06090 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D MM35RIKEN_15020 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D MM35RIKEN_03160 aminopyrimidine aminohydrolase K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D MM35RIKEN_18790 ctsR; CtsR family transcriptional regulator K03708 ctsR; transcriptional regulator of stress and heat shock response
D MM35RIKEN_01640 nrdR; transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR
D MM35RIKEN_00960 mraZ; transcriptional regulator MraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:vfa03021]
D MM35RIKEN_19280 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D MM35RIKEN_19640 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D MM35RIKEN_19630 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D MM35RIKEN_05390 hypothetical protein K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D MM35RIKEN_04760 hypothetical protein K03086 rpoD; RNA polymerase primary sigma factor
D MM35RIKEN_06650 sigA; RNA polymerase sigma factor SigA K03086 rpoD; RNA polymerase primary sigma factor
D MM35RIKEN_23030 DNA-directed RNA polymerase sigma-70 factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D MM35RIKEN_09950 hypothetical protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D MM35RIKEN_23730 DNA-directed RNA polymerase sigma-70 factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D MM35RIKEN_04500 sigG; RNA polymerase sigma-G factor K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
D MM35RIKEN_05620 sigF; RNA polymerase sigma-F factor K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
D MM35RIKEN_06400 sigE; RNA polymerase sigma-E factor K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
D MM35RIKEN_08850 sigK; RNA polymerase sigma factor K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
D MM35RIKEN_06520 RNA polymerase factor sigma-70 K27000 sigH; RNA polymerase sigma-H factor
D MM35RIKEN_18420 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D MM35RIKEN_06000 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
D MM35RIKEN_01730 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D MM35RIKEN_05330 hypothetical protein K03803 rseC; sigma-E factor negative regulatory protein RseC
D MM35RIKEN_02290 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D MM35RIKEN_21640 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
C 03019 Messenger RNA biogenesis [BR:vfa03019]
D MM35RIKEN_21750 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D MM35RIKEN_18640 rnj; ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-]
D MM35RIKEN_18920 rny; ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-]
D MM35RIKEN_09520 yuaA; 3'-5' exoribonuclease YhaM K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-]
D MM35RIKEN_10960 hypothetical protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D MM35RIKEN_17790 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D MM35RIKEN_10430 pfkA; ATP-dependent 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D MM35RIKEN_15000 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D MM35RIKEN_15100 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D MM35RIKEN_17030 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D MM35RIKEN_05820 nucleotide-binding protein K06958 rapZ; RNase adapter protein RapZ
C 03041 Spliceosome
C 03011 Ribosome [BR:vfa03011]
D MM35RIKEN_08860 hypothetical protein K02978 RP-S27e; small subunit ribosomal protein S27e
D MM35RIKEN_05280 bifunctional 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D MM35RIKEN_08580 hypothetical protein K02945 RP-S1; small subunit ribosomal protein S1
D MM35RIKEN_23360 hypothetical protein K02945 RP-S1; small subunit ribosomal protein S1
D MM35RIKEN_03250 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D MM35RIKEN_19060 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D MM35RIKEN_19270 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D MM35RIKEN_19170 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D MM35RIKEN_18610 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D MM35RIKEN_21350 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D MM35RIKEN_19140 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D MM35RIKEN_21150 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D MM35RIKEN_18990 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D MM35RIKEN_19260 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D MM35RIKEN_21340 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D MM35RIKEN_19250 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D MM35RIKEN_19130 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D MM35RIKEN_17800 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D MM35RIKEN_08720 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D MM35RIKEN_19090 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D MM35RIKEN_18630 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D MM35RIKEN_19040 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D MM35RIKEN_17750 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D MM35RIKEN_07700 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D MM35RIKEN_01750 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D MM35RIKEN_19030 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D MM35RIKEN_19000 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D MM35RIKEN_19010 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D MM35RIKEN_19120 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D MM35RIKEN_19150 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D MM35RIKEN_18660 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D MM35RIKEN_01760 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D MM35RIKEN_01740 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D MM35RIKEN_01770 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D MM35RIKEN_21160 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D MM35RIKEN_19100 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D MM35RIKEN_19190 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D MM35RIKEN_19070 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D MM35RIKEN_19290 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D MM35RIKEN_19160 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D MM35RIKEN_07090 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D MM35RIKEN_02130 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D MM35RIKEN_21460 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D MM35RIKEN_19050 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D MM35RIKEN_19020 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D MM35RIKEN_19110 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D MM35RIKEN_21480 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D MM35RIKEN_05780 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D MM35RIKEN_19080 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D MM35RIKEN_19180 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D MM35RIKEN_04490 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D MM35RIKEN_09640 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D MM35RIKEN_01710 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D MM35RIKEN_17320 hypothetical protein K02914 RP-L34; large subunit ribosomal protein L34
D MM35RIKEN_02120 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D MM35RIKEN_21330 rplGB; ribosome-associated protein L7Ae-like K07590 RP-L7A; large subunit ribosomal protein L7A
D MM35RIKEN_r00030 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 03009 Ribosome biogenesis [BR:vfa03009]
D MM35RIKEN_21750 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D MM35RIKEN_18350 era; GTPase Era K03595 era; GTPase
D MM35RIKEN_05130 obg; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-]
D MM35RIKEN_18420 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D MM35RIKEN_06000 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
D MM35RIKEN_01730 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D MM35RIKEN_21570 pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D MM35RIKEN_07180 rsmA; ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D MM35RIKEN_05430 ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D MM35RIKEN_17500 rsmG; ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D MM35RIKEN_00970 rsmH; ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D MM35RIKEN_18820 rsmI; ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D MM35RIKEN_06070 TlyA family rRNA (cytidine-2'-O)-methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D MM35RIKEN_08970 rlmA; 23S rRNA (guanine(745)-N(1))-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D MM35RIKEN_15070 yacO; 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D MM35RIKEN_00440 rlmH; ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D MM35RIKEN_04080 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D MM35RIKEN_18900 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D MM35RIKEN_05440 rlmN; putative dual-specificity RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D MM35RIKEN_15850 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D MM35RIKEN_05230 rluB; pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D MM35RIKEN_09620 rluC; pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D MM35RIKEN_05050 RNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D MM35RIKEN_09920 RNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D MM35RIKEN_16100 pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D MM35RIKEN_22660 ermB; 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) K00561 ermC; 23S rRNA (adenine-N6)-dimethyltransferase [EC:2.1.1.184]
D MM35RIKEN_13910 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D MM35RIKEN_08760 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
D MM35RIKEN_19480 rimO; ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D MM35RIKEN_17670 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D MM35RIKEN_01700 Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D MM35RIKEN_05500 mrnC; mini-ribonuclease 3 K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
D MM35RIKEN_10960 hypothetical protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D MM35RIKEN_05470 rsgA; putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D MM35RIKEN_09670 ribosome biogenesis GTPase Der K03977 engA; GTPase
D MM35RIKEN_05660 rbgA; ribosome biogenesis GTPase A K14540 rbgA; ribosome biogenesis GTPase A
D MM35RIKEN_04380 hflX; GTPase HflX K03665 hflX; GTPase
D MM35RIKEN_11800 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D MM35RIKEN_15890 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D MM35RIKEN_18460 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D MM35RIKEN_18410 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
D MM35RIKEN_17350 hypothetical protein K14761 rlbA; ribosome-associated protein
D MM35RIKEN_00570 rsfS; ribosomal silencing factor RsfS K09710 ybeB; ribosome-associated protein
D MM35RIKEN_18320 ybeY; endoribonuclease YbeY K07042 ybeY; probable rRNA maturation factor
D MM35RIKEN_00550 RNA-binding protein K07574 yhbY; RNA-binding protein
D MM35RIKEN_14230 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
D MM35RIKEN_24250 ychF; ribosome-binding ATPase YchF K06942 ychF; ribosome-binding ATPase
C 03016 Transfer RNA biogenesis [BR:vfa03016]
D MM35RIKEN_01870 MBL fold metallo-hydrolase K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D MM35RIKEN_06610 polynucleotide adenylyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D MM35RIKEN_10550 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D MM35RIKEN_18970 proS2; proline--tRNA ligase 2 K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D MM35RIKEN_18100 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D MM35RIKEN_07710 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D MM35RIKEN_17230 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D MM35RIKEN_01290 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D MM35RIKEN_18860 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D MM35RIKEN_21650 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D MM35RIKEN_17460 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D MM35RIKEN_06980 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D MM35RIKEN_17450 alanyl-tRNA editing protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D MM35RIKEN_13760 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D MM35RIKEN_17730 glyS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D MM35RIKEN_00620 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D MM35RIKEN_17520 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D MM35RIKEN_19500 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D MM35RIKEN_05580 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D MM35RIKEN_17470 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D MM35RIKEN_01590 pheS; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D MM35RIKEN_01580 pheT; phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D MM35RIKEN_06110 tyrS1; tyrosine--tRNA ligase 1 K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D MM35RIKEN_10540 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D MM35RIKEN_15900 dtd; D-aminoacyl-tRNA deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D MM35RIKEN_06960 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D MM35RIKEN_02170 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D MM35RIKEN_17400 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D MM35RIKEN_04120 truA1; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D MM35RIKEN_18250 truA2; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D MM35RIKEN_18490 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D MM35RIKEN_08950 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D MM35RIKEN_16130 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D MM35RIKEN_11800 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D MM35RIKEN_17020 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D MM35RIKEN_17650 mnmE; tRNA modification GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D MM35RIKEN_15550 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D MM35RIKEN_23010 selenide, water dikinase SelD K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D MM35RIKEN_17310 hypothetical protein K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D MM35RIKEN_00520 hypothetical protein K00989 rph; ribonuclease PH [EC:2.7.7.56]
D MM35RIKEN_11410 yjdI; putative Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YjdI K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D MM35RIKEN_06630 hypothetical protein K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-]
D MM35RIKEN_21210 tadA; tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D MM35RIKEN_18540 dusB; tRNA-dihydrouridine synthase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D MM35RIKEN_16990 miaB; tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D MM35RIKEN_08940 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase MtaB K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
D MM35RIKEN_21720 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D MM35RIKEN_08750 trmD; tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D MM35RIKEN_06490 SAM-dependent methyltransferase K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217]
D MM35RIKEN_13600 putative tRNA (cytidine(34)-2'-O)-methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D MM35RIKEN_21690 rRNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family
D MM35RIKEN_21910 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D MM35RIKEN_21170 tRNA 2-thiocytidine(32) synthetase TtcA K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D MM35RIKEN_01800 hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D MM35RIKEN_06120 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D MM35RIKEN_06580 hypothetical protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D MM35RIKEN_06130 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D MM35RIKEN_18130 thiI; putative tRNA sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D MM35RIKEN_18680 tilS; tRNA(Ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D MM35RIKEN_11890 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D MM35RIKEN_13900 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D MM35RIKEN_11880 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D MM35RIKEN_07600 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D MM35RIKEN_21430 nucleotidyltransferase K27343 tmcAL; tRNAmet cytidine acetate ligase [EC:6.3.1.22]
D MM35RIKEN_17790 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:vfa03012]
D MM35RIKEN_18450 hypothetical protein K02519 infB; translation initiation factor IF-2
D MM35RIKEN_02110 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D MM35RIKEN_03260 tsf; elongation factor Ts K02357 tsf; elongation factor Ts
D MM35RIKEN_21370 tuf1; elongation factor Tu K02358 tuf; elongation factor Tu
D MM35RIKEN_14840 elongation factor G K02355 fusA; elongation factor G
D MM35RIKEN_21360 fusA; elongation factor G K02355 fusA; elongation factor G
D MM35RIKEN_11820 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D MM35RIKEN_02030 frr; ribosome-recycling factor K02838 frr; ribosome recycling factor
D MM35RIKEN_19450 prmC; release factor glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D MM35RIKEN_13620 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D MM35RIKEN_19240 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D MM35RIKEN_07660 efp; elongation factor P K02356 efp; elongation factor P
D MM35RIKEN_22980 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D MM35RIKEN_09500 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
C 03110 Chaperones and folding catalysts [BR:vfa03110]
D MM35RIKEN_18770 ATP-dependent Clp protease ATP-binding subunit ClpC K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D MM35RIKEN_05730 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D MM35RIKEN_21320 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D MM35RIKEN_15000 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D MM35RIKEN_15100 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D MM35RIKEN_14990 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D MM35RIKEN_09450 hslO; 33 kDa chaperonin K04083 hslO; molecular chaperone Hsp33
D MM35RIKEN_15010 hypothetical protein K03687 GRPE; molecular chaperone GrpE
D MM35RIKEN_01140 molecular chaperone Hsp20 K13993 HSP20; HSP20 family protein
D MM35RIKEN_15110 groS; 10 kDa chaperonin K04078 groES; chaperonin GroES
D MM35RIKEN_08090 cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D MM35RIKEN_15060 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D MM35RIKEN_15730 cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D MM35RIKEN_18710 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D MM35RIKEN_10790 atpB; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D MM35RIKEN_03560 hypothetical protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D MM35RIKEN_14050 ppiB; peptidyl-prolyl cis-trans isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D MM35RIKEN_13800 trxA; thioredoxin-1 K03671 TXN; thioredoxin
D MM35RIKEN_21770 thiol reductase thioredoxin K03671 TXN; thioredoxin
D MM35RIKEN_23640 thiol reductase thioredoxin K03671 TXN; thioredoxin
D MM35RIKEN_24050 trxA; thioredoxin-1 K03671 TXN; thioredoxin
C 04131 Membrane trafficking [BR:vfa04131]
D MM35RIKEN_19520 gapA; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D MM35RIKEN_21930 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D MM35RIKEN_21320 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system
C 03051 Proteasome [BR:vfa03051]
D MM35RIKEN_21320 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:vfa03032]
D MM35RIKEN_17410 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D MM35RIKEN_13180 dcm; DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D MM35RIKEN_13190 dcm; DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D MM35RIKEN_15950 transcriptional regulator K03530 hupB; DNA-binding protein HU-beta
D MM35RIKEN_17330 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D MM35RIKEN_09250 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D MM35RIKEN_18670 dnaC; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D MM35RIKEN_02580 hypothetical protein K02315 dnaC; DNA replication protein DnaC
D MM35RIKEN_16450 hypothetical protein K02315 dnaC; DNA replication protein DnaC
D MM35RIKEN_17640 dnaC; DNA replication protein DnaC K02315 dnaC; DNA replication protein DnaC
D MM35RIKEN_06640 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D MM35RIKEN_08410 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D MM35RIKEN_16420 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D MM35RIKEN_18620 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D MM35RIKEN_23480 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D MM35RIKEN_05860 dnaE; DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D MM35RIKEN_02090 polC; DNA polymerase III PolC-type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D MM35RIKEN_17340 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D MM35RIKEN_01330 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D MM35RIKEN_17110 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D MM35RIKEN_21860 hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D MM35RIKEN_05670 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D MM35RIKEN_13920 polA; DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
D MM35RIKEN_06690 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D MM35RIKEN_07840 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D MM35RIKEN_24150 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D MM35RIKEN_15790 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D MM35RIKEN_17390 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D MM35RIKEN_15770 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D MM35RIKEN_17380 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D MM35RIKEN_21710 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D MM35RIKEN_02820 hypothetical protein K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
D MM35RIKEN_20130 topB; DNA topoisomerase K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
D MM35RIKEN_20530 topB; DNA topoisomerase K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:vfa03036]
D MM35RIKEN_13180 dcm; DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D MM35RIKEN_13190 dcm; DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D MM35RIKEN_21750 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D MM35RIKEN_15950 transcriptional regulator K03530 hupB; DNA-binding protein HU-beta
D MM35RIKEN_17330 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D MM35RIKEN_17030 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D MM35RIKEN_00500 smc; chromosome partition protein Smc K03529 smc; chromosome segregation protein
D MM35RIKEN_05180 segregation and condensation protein A K05896 scpA; segregation and condensation protein A
D MM35RIKEN_05190 scpB; segregation and condensation protein B K06024 scpB; segregation and condensation protein B
D MM35RIKEN_21600 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D MM35RIKEN_12390 hypothetical protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D MM35RIKEN_00980 hypothetical protein K03586 ftsL; cell division protein FtsL
D MM35RIKEN_01060 hypothetical protein K03589 ftsQ; cell division protein FtsQ
D MM35RIKEN_01030 stage V sporulation protein E K03588 ftsW; cell division protein FtsW
D MM35RIKEN_21610 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D MM35RIKEN_01070 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D MM35RIKEN_17620 hypothetical protein K09888 zapA; cell division protein ZapA
D MM35RIKEN_01370 hypothetical protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D MM35RIKEN_06250 N-acetylmuramoyl-L-alanine amidase CwlD K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D MM35RIKEN_18910 hypothetical protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D MM35RIKEN_17490 site-determining protein K03609 minD; septum site-determining protein MinD
D MM35RIKEN_17070 hypothetical protein K04074 divIVA; cell division initiation protein
D MM35RIKEN_17060 sepF; cell division protein SepF K09772 sepF; cell division inhibitor SepF
D MM35RIKEN_11340 mreB1; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D MM35RIKEN_17580 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D MM35RIKEN_11870 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D MM35RIKEN_17540 soj; sporulation initiation inhibitor Soj K03496 parA; chromosome partitioning protein
D MM35RIKEN_02400 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D MM35RIKEN_03720 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D MM35RIKEN_10250 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D MM35RIKEN_12730 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D MM35RIKEN_13090 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D MM35RIKEN_17530 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D MM35RIKEN_17700 nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D MM35RIKEN_15550 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D MM35RIKEN_17500 rsmG; ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D MM35RIKEN_21720 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D MM35RIKEN_06170 xerD; tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D MM35RIKEN_12510 fic; cell filamentation protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D MM35RIKEN_05750 engB; putative GTP-binding protein EngB K03978 engB; GTP-binding protein
D MM35RIKEN_05840 whiA; putative sporulation transcription regulator WhiA K09762 whiA; cell division protein WhiA
C 03400 DNA repair and recombination proteins [BR:vfa03400]
D MM35RIKEN_04650 ogt1; methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D MM35RIKEN_04200 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D MM35RIKEN_14940 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D MM35RIKEN_04560 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D MM35RIKEN_04240 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D MM35RIKEN_17600 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D MM35RIKEN_21510 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D MM35RIKEN_17250 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D MM35RIKEN_15880 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D MM35RIKEN_06690 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D MM35RIKEN_07840 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D MM35RIKEN_24150 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D MM35RIKEN_13920 polA; DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
D MM35RIKEN_11390 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
D MM35RIKEN_11450 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
D MM35RIKEN_18210 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C
D MM35RIKEN_05650 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D MM35RIKEN_19640 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D MM35RIKEN_19630 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D MM35RIKEN_19280 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D MM35RIKEN_05390 hypothetical protein K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D MM35RIKEN_13630 mfd; transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D MM35RIKEN_17010 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D MM35RIKEN_07380 endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2
D MM35RIKEN_18390 mutS2; endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2
D MM35RIKEN_17000 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D MM35RIKEN_06010 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D MM35RIKEN_06020 hypothetical protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D MM35RIKEN_05860 dnaE; DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D MM35RIKEN_02090 polC; DNA polymerase III PolC-type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D MM35RIKEN_17340 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D MM35RIKEN_01330 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D MM35RIKEN_17110 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D MM35RIKEN_21860 hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D MM35RIKEN_08410 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D MM35RIKEN_16420 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D MM35RIKEN_18620 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D MM35RIKEN_23480 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D MM35RIKEN_07790 recD2; ATP-dependent RecD-like DNA helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D MM35RIKEN_11370 recD2; ATP-dependent RecD-like DNA helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D MM35RIKEN_24210 recD2; ATP-dependent RecD-like DNA helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D MM35RIKEN_19460 DNA recombination/repair protein RecA K03553 recA; recombination protein RecA
D MM35RIKEN_06550 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D MM35RIKEN_06540 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D MM35RIKEN_06560 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D MM35RIKEN_16510 hypothetical protein K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
D MM35RIKEN_05400 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D MM35RIKEN_06240 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D MM35RIKEN_17360 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D MM35RIKEN_18220 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D MM35RIKEN_18370 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D MM35RIKEN_10860 recR; recombination protein RecR K06187 recR; recombination protein RecR
D MM35RIKEN_06100 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D MM35RIKEN_04480 addA; ATP-dependent helicase/nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
D MM35RIKEN_04470 addB; ATP-dependent helicase/deoxyribonuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D MM35RIKEN_15790 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D MM35RIKEN_17390 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D MM35RIKEN_15770 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D MM35RIKEN_17380 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D MM35RIKEN_21710 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D MM35RIKEN_15950 transcriptional regulator K03530 hupB; DNA-binding protein HU-beta
D MM35RIKEN_20720 DNA methylase K03502 umuC; DNA polymerase V
D MM35RIKEN_22300 DNA methylase K03502 umuC; DNA polymerase V
D MM35RIKEN_21880 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D MM35RIKEN_19470 recX; regulatory protein RecX K03565 recX; regulatory protein
D MM35RIKEN_20630 ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D MM35RIKEN_18470 DHH family phosphoesterase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
C 03029 Mitochondrial biogenesis [BR:vfa03029]
D MM35RIKEN_18450 hypothetical protein K02519 infB; translation initiation factor IF-2
D MM35RIKEN_02110 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D MM35RIKEN_03260 tsf; elongation factor Ts K02357 tsf; elongation factor Ts
D MM35RIKEN_21370 tuf1; elongation factor Tu K02358 tuf; elongation factor Tu
D MM35RIKEN_14840 elongation factor G K02355 fusA; elongation factor G
D MM35RIKEN_21360 fusA; elongation factor G K02355 fusA; elongation factor G
D MM35RIKEN_18350 era; GTPase Era K03595 era; GTPase
D MM35RIKEN_06110 tyrS1; tyrosine--tRNA ligase 1 K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D MM35RIKEN_07710 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D MM35RIKEN_17460 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D MM35RIKEN_17730 glyS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D MM35RIKEN_18860 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D MM35RIKEN_08410 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D MM35RIKEN_16420 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D MM35RIKEN_18620 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D MM35RIKEN_23480 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D MM35RIKEN_15000 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D MM35RIKEN_15010 hypothetical protein K03687 GRPE; molecular chaperone GrpE
D MM35RIKEN_15100 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D MM35RIKEN_15110 groS; 10 kDa chaperonin K04078 groES; chaperonin GroES
D MM35RIKEN_14990 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D MM35RIKEN_08950 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D MM35RIKEN_16130 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D MM35RIKEN_17290 hypothetical protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D MM35RIKEN_21320 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:vfa02000]
D MM35RIKEN_03040 ABC transporter ATP-binding protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D MM35RIKEN_03050 multidrug ABC transporter ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D MM35RIKEN_08060 multidrug ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D MM35RIKEN_18560 ABC transporter K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D MM35RIKEN_08050 ABC transporter K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D MM35RIKEN_18570 ABC transporter K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D MM35RIKEN_09580 potD; spermidine/putrescine ABC transporter substrate-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D MM35RIKEN_09590 spermidine/putrescine ABC transporter permease K11070 potC; spermidine/putrescine transport system permease protein
D MM35RIKEN_09600 potB; spermidine/putrescine ABC transporter permease K11071 potB; spermidine/putrescine transport system permease protein
D MM35RIKEN_09610 spermidine/putrescine ABC transporter ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D MM35RIKEN_03130 ABC transporter substrate-binding protein K15598 thiY; putative hydroxymethylpyrimidine transport system substrate-binding protein
D MM35RIKEN_03140 ABC transporter permease K15599 thiX; putative hydroxymethylpyrimidine transport system permease protein
D MM35RIKEN_03150 ABC transporter ATP-binding protein K15600 thiZ; putative hydroxymethylpyrimidine transport system ATP-binding protein
D MM35RIKEN_15340 hypothetical protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D MM35RIKEN_19370 nitrate ABC transporter substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D MM35RIKEN_15350 nitrate ABC transporter permease K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D MM35RIKEN_19360 sulfonate ABC transporter permease K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D MM35RIKEN_15360 sulfate transporter K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D MM35RIKEN_19350 spermidine/putrescine ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D MM35RIKEN_04610 membrane protein K07335 bmpA; basic membrane protein A and related proteins
D MM35RIKEN_09840 hypothetical protein K07335 bmpA; basic membrane protein A and related proteins
D MM35RIKEN_14310 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins
D MM35RIKEN_04630 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein
D MM35RIKEN_09870 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein
D MM35RIKEN_14300 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein
D MM35RIKEN_04640 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein
D MM35RIKEN_09880 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein
D MM35RIKEN_14290 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein
D MM35RIKEN_04620 heme ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D MM35RIKEN_09860 ABC transporter K23537 nupA; general nucleoside transport system ATP-binding protein
D MM35RIKEN_14320 ABC transporter K23537 nupA; general nucleoside transport system ATP-binding protein
D MM35RIKEN_13520 pstS; phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D MM35RIKEN_13510 pstC; phosphate transport system permease protein K02037 pstC; phosphate transport system permease protein
D MM35RIKEN_13500 phosphate transport system permease protein PstA K02038 pstA; phosphate transport system permease protein
D MM35RIKEN_13490 pstB; phosphate import ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D MM35RIKEN_19620 peptide ABC transporter ATP-binding protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D MM35RIKEN_10460 hypothetical protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D MM35RIKEN_23140 amino acid ABC transporter K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D MM35RIKEN_10470 amino acid ABC transporter permease K17077 artQ; arginine/lysine/histidine transport system permease protein
D MM35RIKEN_23150 amino acid ABC transporter permease K17077 artQ; arginine/lysine/histidine transport system permease protein
D MM35RIKEN_10480 gltQ; glutamate ABC transporter ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D MM35RIKEN_23160 glnQ; glutamine ABC transporter ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D MM35RIKEN_03400 hypothetical protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D MM35RIKEN_18720 branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D MM35RIKEN_03360 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D MM35RIKEN_18730 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D MM35RIKEN_03370 livM; branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D MM35RIKEN_18740 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D MM35RIKEN_03380 hypothetical protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D MM35RIKEN_18750 hypothetical protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D MM35RIKEN_03390 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D MM35RIKEN_18760 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D MM35RIKEN_15410 hypothetical protein K02073 metQ; D-methionine transport system substrate-binding protein
D MM35RIKEN_15390 ABC transporter permease K02072 metI; D-methionine transport system permease protein
D MM35RIKEN_15400 metN; methionine import ATP-binding protein MetN K02071 metN; D-methionine transport system ATP-binding protein
D MM35RIKEN_04290 hypothetical protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein
D MM35RIKEN_19770 peptide ABC transporter substrate-binding protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein
D MM35RIKEN_04280 branched-chain amino acid ABC transporter permease K05832 K05832; putative tryptophan/tyrosine transport system permease protein
D MM35RIKEN_19750 ABC transporter permease K05832 K05832; putative tryptophan/tyrosine transport system permease protein
D MM35RIKEN_04270 ABC transporter ATP-binding protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein
D MM35RIKEN_19740 ABC transporter ATP-binding protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein
D MM35RIKEN_06720 amino acid ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D MM35RIKEN_22180 hypothetical protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D MM35RIKEN_06730 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein
D MM35RIKEN_06740 polar amino acid ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D MM35RIKEN_10950 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D MM35RIKEN_12930 diguanylate phosphodiesterase K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D MM35RIKEN_21050 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D MM35RIKEN_12920 peptide ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D MM35RIKEN_12910 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D MM35RIKEN_12900 dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D MM35RIKEN_12890 ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D MM35RIKEN_00330 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D MM35RIKEN_24270 iron ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein
D MM35RIKEN_24280 ABC transporter K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D MM35RIKEN_15690 acdA; periplasmic divalent manganese/zinc-binding lipoprotein K09815 znuA; zinc transport system substrate-binding protein
D MM35RIKEN_15710 ABC transporter K09816 znuB; zinc transport system permease protein
D MM35RIKEN_15700 zinc ABC transporter ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D MM35RIKEN_00650 bioY; biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component
D MM35RIKEN_03010 membrane protein K16926 htsT; energy-coupling factor transport system substrate-specific component
D MM35RIKEN_01940 hypothetical protein K16927 cbrT; energy-coupling factor transport system substrate-specific component
D MM35RIKEN_01930 hypothetical protein K16785 ecfT; energy-coupling factor transport system permease protein
D MM35RIKEN_01960 cobalt transporter K16785 ecfT; energy-coupling factor transport system permease protein
D MM35RIKEN_03020 membrane protein K16785 ecfT; energy-coupling factor transport system permease protein
D MM35RIKEN_04110 ecfT; energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein
D MM35RIKEN_04090 ecfA; energy-coupling factor transporter ATP-binding protein EcfA K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D MM35RIKEN_04100 ecfA2; energy-coupling factor transporter ATP-binding protein EcfA2 K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D MM35RIKEN_01950 hypothetical protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D MM35RIKEN_03030 ABC transporter K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D MM35RIKEN_11600 ABC transporter permease K19084 braE; bacitracin transport system permease protein
D MM35RIKEN_11610 ABC transporter ATP-binding protein K19083 braD; bacitracin transport system ATP-binding protein
D MM35RIKEN_17840 hypothetical protein K16919 ytrC_D; acetoin utilization transport system permease protein
D MM35RIKEN_17830 ABC transporter ATP-binding protein K16921 ytrB; acetoin utilization transport system ATP-binding protein
D MM35RIKEN_21610 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D MM35RIKEN_21600 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D MM35RIKEN_13870 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D MM35RIKEN_20290 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D MM35RIKEN_07160 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D MM35RIKEN_10320 ABC transporter K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D MM35RIKEN_13880 ABC transporter K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D MM35RIKEN_20280 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D MM35RIKEN_23770 yybJ; putative ABC transporter ATP-binding protein YybJ K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D MM35RIKEN_09340 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D MM35RIKEN_09350 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D MM35RIKEN_22680 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D MM35RIKEN_21970 ABC transporter ATP-binding protein K09013 sufC; Fe-S cluster assembly ATP-binding protein
D MM35RIKEN_04680 citrate transporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D MM35RIKEN_15050 MATE family efflux transporter K26939 norM; MATE family, multidrug efflux pump
D MM35RIKEN_12090 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump
D MM35RIKEN_08960 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump
D MM35RIKEN_21670 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump
D MM35RIKEN_09740 multidrug transporter MatE K26937 dinF; MATE family, multidrug efflux pump
D MM35RIKEN_17440 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump
D MM35RIKEN_22360 vmrA; MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump
D MM35RIKEN_02520 tetracycline efflux MFS transporter TetA(P) K18214 tetP_A; MFS transporter, DHA3 family, tetracycline resistance protein
D MM35RIKEN_18400 hypothetical protein K02784 ptsH; phosphocarrier protein HPr
D MM35RIKEN_07620 FdhC protein K21993 fdhC; formate transporter
D MM35RIKEN_17510 mscL; large-conductance mechanosensitive channel K03282 mscL; large conductance mechanosensitive channel
D MM35RIKEN_00590 hypothetical protein K22044 ybiO; moderate conductance mechanosensitive channel
D MM35RIKEN_21290 magnesium transporter MgtE K06213 mgtE; magnesium transporter
D MM35RIKEN_15380 hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family
D MM35RIKEN_14730 eutP; ethanolamine permease K16238 eat; ethanolamine permease
D MM35RIKEN_09080 ZIP family metal transporter K07238 TC.ZIP; zinc transporter, ZIP family
D MM35RIKEN_13040 membrane protein K08978 TC.BAT1; bacterial/archaeal transporter family protein
D MM35RIKEN_04210 transporter K05786 rarD; chloramphenicol-sensitive protein RarD
D MM35RIKEN_13030 yojE; putative transporter YojE K05786 rarD; chloramphenicol-sensitive protein RarD
D MM35RIKEN_22600 putP; sodium:proline symporter K11928 putP; sodium/proline symporter
D MM35RIKEN_15450 Na+/H+ antiporter K18218 tet35; tetracycline resistance efflux pump
D MM35RIKEN_15460 Na+/H+ antiporter K18218 tet35; tetracycline resistance efflux pump
D MM35RIKEN_14140 potassium transporter KefA K03498 trkH; trk/ktr system potassium uptake protein
D MM35RIKEN_15040 potassium transporter TrkH K03498 trkH; trk/ktr system potassium uptake protein
D MM35RIKEN_10890 trkA; potassium transporter peripheral membrane protein K03499 trkA; trk/ktr system potassium uptake protein
D MM35RIKEN_15030 potassium transporter TrkA K03499 trkA; trk/ktr system potassium uptake protein
D MM35RIKEN_00640 uracil permease K02824 uraA; uracil permease
D MM35RIKEN_10690 voltage-gated chloride channel K03281 clcA; chloride channel protein, CIC family
D MM35RIKEN_00670 chromate transporter K07240 chrA; chromate transporter
D MM35RIKEN_00680 chromate transporter K07240 chrA; chromate transporter
D MM35RIKEN_16260 siaP; sialic acid-binding periplasmic protein SiaP K21395 yiaO; TRAP-type transport system periplasmic protein
D MM35RIKEN_04970 Na/Pi cotransporter K03324 yjbB; phosphate:Na+ symporter
D MM35RIKEN_05000 Na/Pi cotransporter K03324 yjbB; phosphate:Na+ symporter
D MM35RIKEN_15930 spoVB; stage V sporulation protein B K06409 spoVB; stage V sporulation protein B
D MM35RIKEN_11350 transporter K24180 mleP; malate permease and related proteins
D MM35RIKEN_13930 transporter K24180 mleP; malate permease and related proteins
D MM35RIKEN_18240 L-lysine permease K06895 lysE; L-lysine exporter family protein LysE/ArgO
D MM35RIKEN_13540 branched-chain amino acid transporter AzlC K26605 azlC; branched chain amino acid efflux pump
D MM35RIKEN_13530 azlD; branched-chain amino acid transport protein AzlD K26606 azlD; branched chain amino acid efflux pump
D MM35RIKEN_10280 riboflavin transporter K23675 fmnP; riboflavin transporter
D MM35RIKEN_13990 proton-coupled thiamine transporter YuaJ K16789 thiT; thiamine transporter
D MM35RIKEN_01030 stage V sporulation protein E K03588 ftsW; cell division protein FtsW
D MM35RIKEN_06930 hypothetical protein K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D MM35RIKEN_06940 oxaloacetate decarboxylase K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D MM35RIKEN_06910 hypothetical protein K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma
D MM35RIKEN_06920 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma
D MM35RIKEN_01890 iron transporter FeoA K04758 feoA; ferrous iron transport protein A
D MM35RIKEN_01900 hypothetical protein K04758 feoA; ferrous iron transport protein A
D MM35RIKEN_03210 hypothetical protein K04758 feoA; ferrous iron transport protein A
D MM35RIKEN_18590 ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A
D MM35RIKEN_01880 hypothetical protein K04759 feoB; ferrous iron transport protein B
D MM35RIKEN_03220 ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D MM35RIKEN_18270 hypothetical protein K04759 feoB; ferrous iron transport protein B
D MM35RIKEN_01360 methyltransferase K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
C 02044 Secretion system [BR:vfa02044]
D MM35RIKEN_05070 hypothetical protein K02237 comEA; competence protein ComEA
D MM35RIKEN_15190 cytidine deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D MM35RIKEN_01340 hypothetical protein K02238 comEC; competence protein ComEC
D MM35RIKEN_02480 hypothetical protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D MM35RIKEN_08590 conjugal transfer protein TraG K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D MM35RIKEN_10190 conjugal transfer protein TraG K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D MM35RIKEN_12600 conjugal transfer protein TraG K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D MM35RIKEN_19860 conjugal transfer protein TraG K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D MM35RIKEN_20400 conjugal transfer protein TraG K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D MM35RIKEN_23350 conjugal transfer protein TraG K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D MM35RIKEN_21070 secA; protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D MM35RIKEN_01720 hypothetical protein K03073 secE; preprotein translocase subunit SecE
D MM35RIKEN_21890 hypothetical protein K03075 secG; preprotein translocase subunit SecG
D MM35RIKEN_19200 secY; protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D MM35RIKEN_08730 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D MM35RIKEN_00510 hypothetical protein K03110 ftsY; fused signal recognition particle receptor
D MM35RIKEN_06140 hypothetical protein K03210 yajC; preprotein translocase subunit YajC
D MM35RIKEN_17290 hypothetical protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
C 02042 Bacterial toxins [BR:vfa02042]
D MM35RIKEN_15380 hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system [BR:vfa02022]
D MM35RIKEN_04990 sensor histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D MM35RIKEN_04980 phoB; DNA-binding response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D MM35RIKEN_15480 DNA-binding response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D MM35RIKEN_11580 sensor histidine kinase K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3]
D MM35RIKEN_11590 DNA-binding response regulator K19082 braR; two-component system, OmpR family, response regulator protein BraR/BceR
D MM35RIKEN_13430 DNA-binding response regulator K02483 K02483; two-component system, OmpR family, response regulator
D MM35RIKEN_13840 spo0A; stage 0 sporulation protein A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A
D MM35RIKEN_22170 hypothetical protein K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]
D MM35RIKEN_00360 response regulator K22010 pdtaR; two-component system, response regulator PdtaR
C 02035 Bacterial motility proteins
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:vfa04812]
D MM35RIKEN_11340 mreB1; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D MM35RIKEN_07890 hypothetical protein K18640 parM; plasmid segregation protein ParM
D MM35RIKEN_23600 hypothetical protein K18640 parM; plasmid segregation protein ParM
D MM35RIKEN_01070 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D MM35RIKEN_17490 site-determining protein K03609 minD; septum site-determining protein MinD
D MM35RIKEN_17540 soj; sporulation initiation inhibitor Soj K03496 parA; chromosome partitioning protein
D MM35RIKEN_02400 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D MM35RIKEN_03720 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D MM35RIKEN_10250 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D MM35RIKEN_12730 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D MM35RIKEN_13090 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D MM35RIKEN_17530 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D MM35RIKEN_17700 nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:vfa04147]
D MM35RIKEN_21320 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D MM35RIKEN_19520 gapA; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D MM35RIKEN_21930 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D MM35RIKEN_13590 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D MM35RIKEN_05690 peptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D MM35RIKEN_15100 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D MM35RIKEN_15000 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D MM35RIKEN_19810 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D MM35RIKEN_21370 tuf1; elongation factor Tu K02358 tuf; elongation factor Tu
D MM35RIKEN_06960 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D MM35RIKEN_16980 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D MM35RIKEN_13780 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D MM35RIKEN_13650 thl; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D MM35RIKEN_19210 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D MM35RIKEN_07070 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D MM35RIKEN_19680 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D MM35RIKEN_11010 glgB; 1,4-alpha-glucan branching enzyme GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D MM35RIKEN_21540 glpK2; glycerol kinase 2 K00864 glpK; glycerol kinase [EC:2.7.1.30]
D MM35RIKEN_00370 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D MM35RIKEN_00410 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D MM35RIKEN_10570 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D MM35RIKEN_10710 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D MM35RIKEN_16170 acoL; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D MM35RIKEN_17990 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D MM35RIKEN_13580 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 02048 Prokaryotic defense system [BR:vfa02048]
D MM35RIKEN_06320 cas3; CRISPR-associated helicase/endonuclease Cas3 K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D MM35RIKEN_06300 type I-C CRISPR-associated protein Cas8c/Csd1 K19117 csd1; CRISPR-associated protein Csd1
D MM35RIKEN_06290 type I-C CRISPR-associated protein Cas7/Csd2 K19118 csd2; CRISPR-associated protein Csd2
D MM35RIKEN_06310 type I-C CRISPR-associated protein Cas5 K19119 cas5d; CRISPR-associated protein Cas5d
D MM35RIKEN_11150 DEAD/DEAH box helicase K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D MM35RIKEN_11130 hypothetical protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D MM35RIKEN_03650 type I restriction-modification system subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D MM35RIKEN_11120 hypothetical protein K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D MM35RIKEN_13180 dcm; DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D MM35RIKEN_13190 dcm; DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D MM35RIKEN_01630 hypothetical protein K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D MM35RIKEN_12770 hypothetical protein K07473 dinJ; DNA-damage-inducible protein J
D MM35RIKEN_12760 hypothetical protein K19092 parE1_3_4; toxin ParE1/3/4
D MM35RIKEN_01070 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D MM35RIKEN_11340 mreB1; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D MM35RIKEN_10550 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D MM35RIKEN_08950 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D MM35RIKEN_16130 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:vfa01504]
D MM35RIKEN_02520 tetracycline efflux MFS transporter TetA(P) K18214 tetP_A; MFS transporter, DHA3 family, tetracycline resistance protein
D MM35RIKEN_15450 Na+/H+ antiporter K18218 tet35; tetracycline resistance efflux pump
D MM35RIKEN_15460 Na+/H+ antiporter K18218 tet35; tetracycline resistance efflux pump
D MM35RIKEN_02510 tetO; tetracycline resistance ribosomal protection protein Tet(O) K18220 tetM; ribosomal protection tetracycline resistance protein
D MM35RIKEN_22660 ermB; 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) K00561 ermC; 23S rRNA (adenine-N6)-dimethyltransferase [EC:2.1.1.184]
D MM35RIKEN_06990 cat; chloramphenicol acetyltransferase K19271 catA; chloramphenicol O-acetyltransferase type A [EC:2.3.1.28]
D MM35RIKEN_09710 hypothetical protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:vfa00537]
D MM35RIKEN_05690 peptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:vfa03100]
D MM35RIKEN_t00040 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D MM35RIKEN_t00320 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D MM35RIKEN_t00430 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D MM35RIKEN_t00200 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D MM35RIKEN_t00010 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D MM35RIKEN_t00020 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D MM35RIKEN_t00250 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D MM35RIKEN_t00180 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D MM35RIKEN_t00360 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D MM35RIKEN_t00150 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D MM35RIKEN_t00330 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D MM35RIKEN_t00450 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D MM35RIKEN_t00070 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D MM35RIKEN_t00400 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D MM35RIKEN_t00160 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D MM35RIKEN_t00470 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D MM35RIKEN_t00240 tRNA-His K14226 tRNA-His; tRNA His
D MM35RIKEN_t00050 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D MM35RIKEN_t00310 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D MM35RIKEN_t00420 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D MM35RIKEN_t00060 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D MM35RIKEN_t00410 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D MM35RIKEN_t00290 tRNA-Met K14230 tRNA-Met; tRNA Met
D MM35RIKEN_t00380 tRNA-Met K14230 tRNA-Met; tRNA Met
D MM35RIKEN_t00460 tRNA-Met K14230 tRNA-Met; tRNA Met
D MM35RIKEN_t00170 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D MM35RIKEN_t00350 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D MM35RIKEN_t00490 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D MM35RIKEN_t00370 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D MM35RIKEN_t00500 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D MM35RIKEN_t00190 tRNA-Val K14237 tRNA-Val; tRNA Val
D MM35RIKEN_t00510 tRNA-Val K14237 tRNA-Val; tRNA Val
D MM35RIKEN_r00030 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D MM35RIKEN_03490 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase K22024 pdxA2; 4-phospho-D-threonate 3-dehydrogenase / 4-phospho-D-erythronate 3-dehydrogenase [EC:1.1.1.408 1.1.1.409]
D MM35RIKEN_16200 acoA; pyruvate dehydrogenase E1 component subunit alpha K21416 acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [EC:1.1.1.-]
D MM35RIKEN_16190 acoB; TPP-dependent acetoin dehydrogenase complex, E1 protein subunit beta K21417 acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta [EC:1.1.1.-]
D MM35RIKEN_07540 iorA; indolepyruvate oxidoreductase subunit IorA K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8]
D MM35RIKEN_07550 indolepyruvate oxidoreductase K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8]
D MM35RIKEN_01860 hypothetical protein K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17]
D MM35RIKEN_11540 NADH dehydrogenase K17999 hydC; iron-hydrogenase subunit gamma [EC:1.12.1.4]
D MM35RIKEN_14000 rbo; superoxide reductase K05919 dfx; superoxide reductase [EC:1.15.1.2]
D MM35RIKEN_23700 rbo; superoxide reductase K05919 dfx; superoxide reductase [EC:1.15.1.2]
D MM35RIKEN_24080 ferritin K02217 ftnA; ferritin [EC:1.16.3.2]
D MM35RIKEN_00800 ferredoxin-NADP+ reductase subunit alpha K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D MM35RIKEN_07020 nrdG; anaerobic ribonucleoside-triphosphate reductase-activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D MM35RIKEN_14920 radical SAM protein K04070 pflX; putative pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D MM35RIKEN_15130 RNA methyltransferase K07444 ypsC; putative N6-adenine-specific DNA methylase [EC:2.1.1.-]
D MM35RIKEN_01500 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D MM35RIKEN_10850 thiamine biosynthesis lipoprotein ApbE K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D MM35RIKEN_03500 Hrp-dependent type III effector protein K22129 dtnK; D-threonate/D-erythronate kinase [EC:2.7.1.219 2.7.1.220]
D MM35RIKEN_10420 dihydroxyacetone kinase K07030 fakA; fatty acid kinase [EC:2.7.2.18]
D MM35RIKEN_05310 membrane protein K18672 dacA; diadenylate cyclase [EC:2.7.7.85]
D MM35RIKEN_05610 spoIIAB; anti-sigma F factor K06379 spoIIAB; stage II sporulation protein AB (anti-sigma F factor) [EC:2.7.11.1]
D MM35RIKEN_05790 scoC; HPr kinase/phosphorylase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-]
D MM35RIKEN_18520 hypothetical protein K06382 spoIIE; stage II sporulation protein E [EC:3.1.3.16]
D MM35RIKEN_12000 phosphatase K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D MM35RIKEN_07680 hypothetical protein K07015 yqeG; putative phosphatase [EC:3.1.3.-]
D MM35RIKEN_18650 phosphoesterase K22927 gdpP; cyclic-di-AMP phosphodiesterase [EC:3.1.4.59]
D MM35RIKEN_17270 hydrolase TatD K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D MM35RIKEN_01320 rnmV; ribonuclease M5 K05985 rnmV; ribonuclease M5 [EC:3.1.26.8]
D MM35RIKEN_05410 def2; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D MM35RIKEN_17150 defA; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D MM35RIKEN_09890 8-oxoguanine deaminase K18456 E3.5.4.32; 8-oxoguanine deaminase [EC:3.5.4.32]
D MM35RIKEN_13020 endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D MM35RIKEN_21390 reactive intermediate/imine deaminase K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D MM35RIKEN_23910 magnesium chelatase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D MM35RIKEN_04920 oleate hydratase K10254 ohyA; oleate hydratase [EC:4.2.1.53]
D MM35RIKEN_08180 hypothetical protein K10254 ohyA; oleate hydratase [EC:4.2.1.53]
D MM35RIKEN_01600 hypothetical protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D MM35RIKEN_15220 rnfD; electron transport complex subunit D K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D MM35RIKEN_15210 rnfC; electron transport complex subunit C K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D MM35RIKEN_15260 rnfB; electron transport complex protein RnfB K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D MM35RIKEN_21500 pacL; ATPase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D MM35RIKEN_00490 cadmium-translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
C 99981 Carbohydrate metabolism
D MM35RIKEN_06900 sugar fermentation stimulation protein SfsA K06206 sfsA; sugar fermentation stimulation protein A
C 99982 Energy metabolism
D MM35RIKEN_05870 frx-6; ferredoxin K05337 fer; ferredoxin
D MM35RIKEN_17810 fer; ferredoxin K05337 fer; ferredoxin
D MM35RIKEN_15230 Na+-transporting NADH:ubiquinone oxidoreductase subunit 3 K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D MM35RIKEN_15240 rnfE; electron transport complex subunit E K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D MM35RIKEN_15250 rnfA; electron transport complex subunit A K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D MM35RIKEN_16120 iron-sulfur cluster assembly scaffold protein K04488 iscU; nitrogen fixation protein NifU and related proteins
D MM35RIKEN_23050 hypothetical protein K02574 napH; ferredoxin-type protein NapH
D MM35RIKEN_13420 4Fe-4S ferredoxin K02574 napH; ferredoxin-type protein NapH
C 99983 Lipid metabolism
D MM35RIKEN_01530 6-phosphogluconate dehydratase K25232 fakB; fatty acid kinase fatty acid binding subunit
D MM35RIKEN_19570 DegV domain-containing protein K25232 fakB; fatty acid kinase fatty acid binding subunit
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D MM35RIKEN_17050 YggS family pyridoxal phosphate enzyme K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D MM35RIKEN_05030 cwlJ; cell wall hydrolase K01449 cwlJ; cell wall hydrolase
C 99987 Cofactor metabolism
C 99988 Secondary metabolism
C 99999 Others
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D MM35RIKEN_22210 RNA-binding transcriptional accessory protein K06959 tex; protein Tex
D MM35RIKEN_05370 UPF0296 protein K09777 remA; extracellular matrix regulatory protein A
D MM35RIKEN_17370 hypothetical protein K24648 remB; extracellular matrix regulatory protein B
C 99974 Translation
D MM35RIKEN_16000 RNA-binding protein S1 K07571 K07571; S1 RNA binding domain protein
D MM35RIKEN_15860 MBL fold hydrolase K07576 K07576; metallo-beta-lactamase family protein
C 99975 Protein processing
D MM35RIKEN_18780 hypothetical protein K19411 mcsA; protein arginine kinase activator
D MM35RIKEN_00770 tig; trigger factor K03545 tig; trigger factor
D MM35RIKEN_05710 tig; trigger factor K03545 tig; trigger factor
D MM35RIKEN_14060 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D MM35RIKEN_18140 Fis family transcriptional regulator K07391 comM; magnesium chelatase family protein
D MM35RIKEN_06820 hypothetical protein K07402 xdhC; xanthine dehydrogenase accessory factor
D MM35RIKEN_09750 molybdenum hydroxylase K07402 xdhC; xanthine dehydrogenase accessory factor
C 99976 Replication and repair
D MM35RIKEN_11530 UPF0758 protein K03630 radC; DNA repair protein RadC
D MM35RIKEN_05680 UPF0102 protein K07460 yraN; putative endonuclease
D MM35RIKEN_21700 hypothetical protein K04096 smf; DNA processing protein
D MM35RIKEN_00070 Cro/Cl family transcriptional regulator K07467 nicK; putative DNA relaxase
D MM35RIKEN_14410 Cro/Cl family transcriptional regulator K07467 nicK; putative DNA relaxase
D MM35RIKEN_22870 hypothetical protein K07467 nicK; putative DNA relaxase
D MM35RIKEN_04570 ATPase AAA K07478 ycaJ; putative ATPase
D MM35RIKEN_09400 hypothetical protein K06919 K06919; putative DNA primase/helicase
D MM35RIKEN_09780 hypothetical protein K07491 rayT; REP-associated tyrosine transposase
D MM35RIKEN_22650 IS200/IS605 family transposase K07491 rayT; REP-associated tyrosine transposase
C 99979 Viral proteins
C 99998 Others
D MM35RIKEN_21870 nucleoid-associated protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D MM35RIKEN_11680 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D MM35RIKEN_22430 sodium:proline symporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D MM35RIKEN_23190 sodium:solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D MM35RIKEN_15470 transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D MM35RIKEN_15640 transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D MM35RIKEN_17890 sodium-dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D MM35RIKEN_19400 sodium-dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D MM35RIKEN_08880 alanine glycine permease K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D MM35RIKEN_14190 brnQ-2; branched-chain amino acid transport system carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
C 99978 Cell growth
D MM35RIKEN_21190 hypothetical protein K06317 bofA; inhibitor of the pro-sigma K processing machinery
D MM35RIKEN_06260 hypothetical protein K06333 cotJB; spore coat protein JB
D MM35RIKEN_06270 hypothetical protein K06334 cotJC; spore coat protein JC
D MM35RIKEN_17280 single-stranded DNA-binding protein K06346 jag; spoIIIJ-associated protein
D MM35RIKEN_18840 spmA; spore maturation protein K06373 spmA; spore maturation protein A
D MM35RIKEN_18850 spmB; spore maturation protein B K06374 spmB; spore maturation protein B
D MM35RIKEN_05600 anti-sigma factor antagonist K06378 spoIIAA; stage II sporulation protein AA (anti-sigma F factor antagonist)
D MM35RIKEN_10560 hypothetical protein K06384 spoIIM; stage II sporulation protein M
D MM35RIKEN_10300 hypothetical protein K06385 spoIIP; stage II sporulation protein P
D MM35RIKEN_05560 stage II sporulation protein R K06387 spoIIR; stage II sporulation protein R
D MM35RIKEN_05910 stage III sporulation protein AA K06390 spoIIIAA; stage III sporulation protein AA
D MM35RIKEN_05930 hypothetical protein K06392 spoIIIAC; stage III sporulation protein AC
D MM35RIKEN_05940 hypothetical protein K06393 spoIIIAD; stage III sporulation protein AD
D MM35RIKEN_05950 hypothetical protein K06394 spoIIIAE; stage III sporulation protein AE
D MM35RIKEN_05970 hypothetical protein K06396 spoIIIAG; stage III sporulation protein AG
D MM35RIKEN_05980 hypothetical protein K06397 spoIIIAH; stage III sporulation protein AH
D MM35RIKEN_06460 stage IV sporulation protein A K06398 spoIVA; stage IV sporulation protein A
D MM35RIKEN_00310 resolvase K06400 spoIVCA; site-specific DNA recombinase
D MM35RIKEN_02600 recombinase K06400 spoIVCA; site-specific DNA recombinase
D MM35RIKEN_02730 resolvase K06400 spoIVCA; site-specific DNA recombinase
D MM35RIKEN_03800 recombinase K06400 spoIVCA; site-specific DNA recombinase
D MM35RIKEN_04070 tndX; recombinase K06400 spoIVCA; site-specific DNA recombinase
D MM35RIKEN_08510 resolvase K06400 spoIVCA; site-specific DNA recombinase
D MM35RIKEN_09440 recombinase K06400 spoIVCA; site-specific DNA recombinase
D MM35RIKEN_20020 resolvase K06400 spoIVCA; site-specific DNA recombinase
D MM35RIKEN_20950 recombinase K06400 spoIVCA; site-specific DNA recombinase
D MM35RIKEN_20960 resolvase K06400 spoIVCA; site-specific DNA recombinase
D MM35RIKEN_20970 hypothetical protein K06400 spoIVCA; site-specific DNA recombinase
D MM35RIKEN_14850 stage V sporulation protein AC K06405 spoVAC; stage V sporulation protein AC
D MM35RIKEN_02320 spoVAD; stage V sporulation protein AD K06406 spoVAD; stage V sporulation protein AD
D MM35RIKEN_02330 spoVAC1; stage V sporulation protein AE K06407 spoVAE; stage V sporulation protein AE
D MM35RIKEN_00880 spore germination protein K06408 spoVAF; stage V sporulation protein AF
D MM35RIKEN_12470 hypothetical protein K06421 sspD; small acid-soluble spore protein D (minor alpha/beta-type SASP)
D MM35RIKEN_18300 hypothetical protein K06438 yqfD; similar to stage IV sporulation protein
D MM35RIKEN_05100 hypothetical protein K06298 gerM; germination protein M
D MM35RIKEN_15810 hypothetical protein K06298 gerM; germination protein M
C 99993 Cell motility
C 99995 Signaling proteins
D MM35RIKEN_11060 cstA; carbon starvation protein A K06200 cstA; carbon starvation protein
D MM35RIKEN_03120 bipA; GTP-binding protein K06207 typA; GTP-binding protein
D MM35RIKEN_08920 UPF0237 protein K07166 K07166; ACT domain-containing protein
D MM35RIKEN_18310 phosphate starvation protein PhoH K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
C 99992 Structural proteins
D MM35RIKEN_12150 hypothetical protein K07273 acm; lysozyme
C 99994 Others
D MM35RIKEN_13480 phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein
D MM35RIKEN_09990 hypothetical protein K26996 sdpI; immunity protein, SdpI family
B
B 09194 Poorly characterized
C 99996 General function prediction only
D MM35RIKEN_10900 hypothetical protein K07058 K07058; membrane protein
D MM35RIKEN_04350 pip; ABC transporter K01421 yhgE; putative membrane protein
D MM35RIKEN_04370 pip; ABC transporter K01421 yhgE; putative membrane protein
C 99997 Function unknown
D MM35RIKEN_22530 hypothetical protein K06872 K06872; uncharacterized protein
D MM35RIKEN_07990 hypothetical protein K06889 K06889; uncharacterized protein
D MM35RIKEN_23590 ATPase K06921 K06921; uncharacterized protein
D MM35RIKEN_16210 DNA-binding protein K06934 K06934; uncharacterized protein
D MM35RIKEN_18010 hypothetical protein K06934 K06934; uncharacterized protein
D MM35RIKEN_08320 hypothetical protein K06940 K06940; uncharacterized protein
D MM35RIKEN_08710 UPF0109 protein K06960 K06960; uncharacterized protein
D MM35RIKEN_07950 zinc metallopeptidase K06973 K06973; uncharacterized protein
D MM35RIKEN_12430 5-nitroimidazole antibiotic resistance protein K07005 K07005; uncharacterized protein
D MM35RIKEN_01910 PTS sugar transporter subunit IID K07035 K07035; uncharacterized protein
D MM35RIKEN_15310 nucleotidyltransferase K07075 K07075; uncharacterized protein
D MM35RIKEN_15740 yunE; UPF0721 transmembrane protein YunE K07090 K07090; uncharacterized protein
D MM35RIKEN_21260 hypothetical protein K07090 K07090; uncharacterized protein
D MM35RIKEN_21270 hypothetical protein K07090 K07090; uncharacterized protein
D MM35RIKEN_07230 yfcE; phosphoesterase K07095 K07095; uncharacterized protein
D MM35RIKEN_07270 phosphoesterase K07095 K07095; uncharacterized protein
D MM35RIKEN_05700 ser/threonine protein phosphatase K07099 K07099; uncharacterized protein
D MM35RIKEN_01920 transcriptional regulator K07105 K07105; uncharacterized protein
D MM35RIKEN_01810 membrane protein K07112 K07112; uncharacterized protein
D MM35RIKEN_08220 dltE; short-chain dehydrogenase K07124 K07124; uncharacterized protein
D MM35RIKEN_10400 hypothetical protein K07126 K07126; uncharacterized protein
D MM35RIKEN_23420 ATPase K07133 K07133; uncharacterized protein
D MM35RIKEN_23960 ATPase AAA K07133 K07133; uncharacterized protein
D MM35RIKEN_04400 FAD-dependent oxidoreductase K07137 K07137; uncharacterized protein
D MM35RIKEN_04430 hypothetical protein K07137 K07137; uncharacterized protein
D MM35RIKEN_09910 4Fe-4S ferredoxin K07138 K07138; uncharacterized protein
D MM35RIKEN_07610 membrane protein K07150 K07150; uncharacterized protein
D MM35RIKEN_17300 putative membrane protein insertion efficiency factor K08998 K08998; uncharacterized protein
D MM35RIKEN_08910 UPF0210 protein K09157 K09157; uncharacterized protein
D MM35RIKEN_05520 yuzA; putative membrane protein YuzA K09779 K09779; uncharacterized protein
D MM35RIKEN_08740 UPF0122 protein K09787 K09787; uncharacterized protein
D MM35RIKEN_20680 hypothetical protein K09807 K09807; uncharacterized protein
D MM35RIKEN_18330 hypothetical protein K09974 K09974; uncharacterized protein
D MM35RIKEN_00870 hypothetical protein K01163 K01163; uncharacterized protein
D MM35RIKEN_21470 hypothetical protein K07584 ysxB; uncharacterized protein
D MM35RIKEN_18430 hypothetical protein K07742 ylxR; uncharacterized protein
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: September 19, 2024