+E Messenger RNA Biogenesis KO #

  Messenger RNA Biogenesis - Aliivibrio fischeri ES114

% ! AEukaryotic type B mRNA processing factors C 5' end processing D Capping factors D Cap binding complex C 3' end processing D Pre-mRNA cleavage factor Im (CFIm) D Pre-mRNA cleavage factor IIm (CFIIm) D Cleavage and polyadenylation specificity factor (CPSF) complex D Cleavage stimulation factor (CSTF) complex D U7-dependent histone pre-mRNA processing factors D DRB sensitivity inducing factor (DSIF) complex D N6-methyltransferase complex D Poly(A) addition factors D Negative regulators of mRNA 3' end processing C Other processing factors B mRNA surveillance and transport factors C Transport factors D EJC complex D TREX complex D TREX-2 complex D Nuclear pore complex D Ran-mediated transport factors D eIF4F and regulatory proteins D APOBEC1-ACF complex D Other transport factors C Surveillance factors D Surveillance complex D Protein phosphatase 2A D Other surveillance factors C Factors involved in mRNA localization D Cargo complex D Factors that have mRNA localization signals D Trans-acting binding proteins D Other mRNA localization factors C mRNA cycle factors D Common to processing body (P body) and stress granule D P-body specific factors D Stress granule specific factors B mRNA degradation factors C 5'-3' decay D Decapping complex D Lsm complex D 5' exonucleases D Other 5'-3' decay factors C 3'-5' decay D Core exosome factors D Exosome cofactors D TRAMP complex D Ski complex D Ccr4-NOT complex D Pan complex D Other 3'-5' decay factors C Other degradation factors D RNases # AProkaryotic type B Bacterial mRNA degradation factors C RNA degradosome components D Ribonucreases E VF_1748 rne; rne K08300 rne; ribonuclease E [EC:3.1.26.12] E VF_0376 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] E VF_2087 rnc; RNase III K03685 rnc; ribonuclease III [EC:3.1.26.3] E VF_2314 rnr; exoribonuclease R, RNase R K12573 rnr; ribonuclease R [EC:3.1.13.1] E VF_2329 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D Helicases E VF_0056 rhlB; ATP-dependent RNA helicase K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] E VF_A0374 ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] E VF_A0151 rhlE; RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] E VF_1790 ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] E VF_1439 ATP-dependent RNA helicase, DEAD box family K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] E VF_A0384 deaD; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] E VF_0070 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] E VF_A1156 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Other RNA degradosome components E VF_2075 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] E VF_0490 pnp; polynucleotide phosphorylase (PNPase) K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] E VF_0058 rho; transcription termination factor K03628 rho; transcription termination factor Rho E VF_2340 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C Other RNA degradation factors D Chaperones E VF_1994 dnaK; chaperone Hsp70/DnaK, co-chaperone with DnaJ K04043 dnaK; molecular chaperone DnaK E VF_1467 chaperone, DnaK-like protein K04043 dnaK; molecular chaperone DnaK E VF_0205 groL; Cpn60 chaperonin GroEL, large subunit of GroESL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] E VF_2323 hfq; RNA chaperone Hfq (HF-I) K03666 hfq; host factor-I protein D Others E VF_2166 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] E VF_0456 nudH; nucleotide hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] E VF_0538 csrA; pleiotropic regulatory protein for carbon source metabolism K03563 csrA; carbon storage regulator E VF_0355 csrD; conserved inner membrane protein K18765 csrD; RNase E specificity factor CsrD E VF_2119 rraA2; ribonuclease E (RNase E) inhibitor protein K02553 rraA; regulator of ribonuclease activity A E VF_0211 rraA; ribonuclease E (RNase E) inhibitor protein K02553 rraA; regulator of ribonuclease activity A E VF_0409 rraB; conserved protein K09893 rraB; regulator of ribonuclease activity B E VF_0384 yhbJ; predicted protein with nucleoside triphosphate hydrolase domain K06958 rapZ; RNase adapter protein RapZ E VF_1500 ATP-dependent helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] E VF_2163 hrpB; predicted ATP-dependent helicase K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6] D Bacterial Small RNA Regulators E VF_2578 ryhB; RyhB regulatory antisense RNA involved in iron homeostasis K18507 ryhB; small regulatory RNA RyhB E VF_2577 csrB2; CsrB2 RNA, regulator of CsrA K18515 csrB; small regulatory RNA CsrB E VF_2593 csrB1; CsrB1 RNA, regulator of CsrA K18515 csrB; small regulatory RNA CsrB E VF_2579 spf; Spot 42 regulatory RNA K18527 spf; small regulatory RNA Spot 42 B Archeal mRNA degradation factors C Exosome components D Core exosome D Cofactors D Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024