+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Aliivibrio fischeri ES114
%
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
D Cap binding complex
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
D Pre-mRNA cleavage factor IIm (CFIIm)
D Cleavage and polyadenylation specificity factor (CPSF) complex
D Cleavage stimulation factor (CSTF) complex
D U7-dependent histone pre-mRNA processing factors
D DRB sensitivity inducing factor (DSIF) complex
D N6-methyltransferase complex
D Poly(A) addition factors
D Negative regulators of mRNA 3' end processing
C Other processing factors
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
D TREX complex
D TREX-2 complex
D Nuclear pore complex
D Ran-mediated transport factors
D eIF4F and regulatory proteins
D APOBEC1-ACF complex
D Other transport factors
C Surveillance factors
D Surveillance complex
D Protein phosphatase 2A
D Other surveillance factors
C Factors involved in mRNA localization
D Cargo complex
D Factors that have mRNA localization signals
D Trans-acting binding proteins
D Other mRNA localization factors
C mRNA cycle factors
D Common to processing body (P body) and stress granule
D P-body specific factors
D Stress granule specific factors
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
D Lsm complex
D 5' exonucleases
D Other 5'-3' decay factors
C 3'-5' decay
D Core exosome factors
D Exosome cofactors
D TRAMP complex
D Ski complex
D Ccr4-NOT complex
D Pan complex
D Other 3'-5' decay factors
C Other degradation factors
D RNases
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AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E VF_1748 rne; rne K08300 rne; ribonuclease E [EC:3.1.26.12]
E VF_0376 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
E VF_2087 rnc; RNase III K03685 rnc; ribonuclease III [EC:3.1.26.3]
E VF_2314 rnr; exoribonuclease R, RNase R K12573 rnr; ribonuclease R [EC:3.1.13.1]
E VF_2329 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
E VF_0056 rhlB; ATP-dependent RNA helicase K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
E VF_A0374 ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
E VF_A0151 rhlE; RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
E VF_1790 ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
E VF_1439 ATP-dependent RNA helicase, DEAD box family K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
E VF_A0384 deaD; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
E VF_0070 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
E VF_A1156 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Other RNA degradosome components
E VF_2075 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E VF_0490 pnp; polynucleotide phosphorylase (PNPase) K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E VF_0058 rho; transcription termination factor K03628 rho; transcription termination factor Rho
E VF_2340 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E VF_1994 dnaK; chaperone Hsp70/DnaK, co-chaperone with DnaJ K04043 dnaK; molecular chaperone DnaK
E VF_1467 chaperone, DnaK-like protein K04043 dnaK; molecular chaperone DnaK
E VF_0205 groL; Cpn60 chaperonin GroEL, large subunit of GroESL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E VF_2323 hfq; RNA chaperone Hfq (HF-I) K03666 hfq; host factor-I protein
D Others
E VF_2166 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
E VF_0456 nudH; nucleotide hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
E VF_0538 csrA; pleiotropic regulatory protein for carbon source metabolism K03563 csrA; carbon storage regulator
E VF_0355 csrD; conserved inner membrane protein K18765 csrD; RNase E specificity factor CsrD
E VF_2119 rraA2; ribonuclease E (RNase E) inhibitor protein K02553 rraA; regulator of ribonuclease activity A
E VF_0211 rraA; ribonuclease E (RNase E) inhibitor protein K02553 rraA; regulator of ribonuclease activity A
E VF_0409 rraB; conserved protein K09893 rraB; regulator of ribonuclease activity B
E VF_0384 yhbJ; predicted protein with nucleoside triphosphate hydrolase domain K06958 rapZ; RNase adapter protein RapZ
E VF_1500 ATP-dependent helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
E VF_2163 hrpB; predicted ATP-dependent helicase K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
D Bacterial Small RNA Regulators
E VF_2578 ryhB; RyhB regulatory antisense RNA involved in iron homeostasis K18507 ryhB; small regulatory RNA RyhB
E VF_2577 csrB2; CsrB2 RNA, regulator of CsrA K18515 csrB; small regulatory RNA CsrB
E VF_2593 csrB1; CsrB1 RNA, regulator of CsrA K18515 csrB; small regulatory RNA CsrB
E VF_2579 spf; Spot 42 regulatory RNA K18527 spf; small regulatory RNA Spot 42
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
D Cofactors
D Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024