+E Transcription factors KO
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Transcription Factors - Aliivibrio fischeri MJ11
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D VFMJ11_0870 transcriptional regulator, AraC family K19693 tfoS; AraC family transcriptional regulator, chitin signaling transcriptional activator
D VFMJ11_A0982 transcriptional regulatory protein K13652 K13652; AraC family transcriptional regulator
D VFMJ11_A0910 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
C LysR family
D VFMJ11_0605 glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D VFMJ11_A1184 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D VFMJ11_2658 HTH-type transcriptional regulator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D VFMJ11_1850 transcriptional activator protein MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D VFMJ11_0461 transcriptional activator protein NhaR (Na+/H+ antiporter regulatory protein) K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D VFMJ11_2411 hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D VFMJ11_2108 hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D VFMJ11_2377 probable HTH-type transcriptional regulator LeuO K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D VFMJ11_1815 transcriptional regulator, LysR family K10918 aphB; LysR family transcriptional regulator, transcriptional activator AphB
D VFMJ11_1583 HTH-type transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D VFMJ11_1640 transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D VFMJ11_1603 transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D VFMJ11_A1167 transcriptional regulator, LysR family K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
D VFMJ11_A0272 glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D VFMJ11_A1125 transcriptional regulator, GlpR family K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
C LacI family
D VFMJ11_1545 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D VFMJ11_1334 HTH-type transcriptional regulator GalR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D VFMJ11_A0398 HTH-type transcriptional regulator GalR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D VFMJ11_2387 transcriptional repressor CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D VFMJ11_A1061 catabolite repressor-activator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D VFMJ11_1675 HTH-type transcriptional repressor PurR K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D VFMJ11_A1079 HTH-type transcriptional regulator IdnR K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D VFMJ11_A0386 HTH-type transcriptional regulator EbgR K12113 ebgR; LacI family transcriptional regulator, ebg operon repressor
D VFMJ11_1847 maltose regulon regulatory protein MalI K16136 malI; LacI family transcriptional regulator, maltose regulon regulatory protein
C GntR family
D VFMJ11_A0504 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D VFMJ11_1753 fadR; fatty acid metabolism transcriptional regulator FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D VFMJ11_2295 transcriptional regulator of pyruvate dehydrogenase complex K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D VFMJ11_A0034 GntR domain protein K19776 dgoR; GntR family transcriptional regulator, galactonate operon transcriptional repressor
D VFMJ11_2371 transcriptional regulator K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator
C TetR/AcrR family
D VFMJ11_2653 transcriptional regulator, TetR family K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor
D VFMJ11_0121 HTH-type protein SlmA K05501 slmA; TetR/AcrR family transcriptional regulator
D VFMJ11_2291 LitR, transcriptional regulator K10913 hapR; TetR/AcrR family transcriptional regulator, hemagglutinin/protease regulatory protein
D VFMJ11_A0112 transcriptional regulator K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness
D VFMJ11_A0396 transcriptional regulator, TetR family K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness
D VFMJ11_1158 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D VFMJ11_2562 transcriptional repressor of FabB K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
C Lrp/AsnC family
D VFMJ11_0079 transcriptional regulator, AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D VFMJ11_0942 leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D VFMJ11_A1225 leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D VFMJ11_1681 glutamate uptake regulatory protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D VFMJ11_A1043 transcriptional activator protein LuxR K15852 luxR; LuxR family transcriptional regulator, transcriptional activator of the bioluminescence operon
D VFMJ11_2526 regulatory protein CsgD K20918 vpsT; LuxR family transcriptional regulator, positive regulator of biofilm formation
D VFMJ11_A0938 HTH-type transcriptional regulator MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D VFMJ11_A0372 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D VFMJ11_0819 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D VFMJ11_2511 zntR; Zn(II)-responsive transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D VFMJ11_A1171 transcriptional regulator, MerR family K21744 tipA; MerR family transcriptional regulator, thiopeptide resistance regulator
C Fur family
D VFMJ11_0848 ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D VFMJ11_0293 zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
C CRP/FNR family
D VFMJ11_2392 cyclic nucleotide-binding domain protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D VFMJ11_1385 transcriptional activator protein FnrA K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D VFMJ11_0630 Rrf2 family protein K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D VFMJ11_2428 HTH-type transcriptional regulator NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D VFMJ11_2482 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D VFMJ11_A0990 transcriptional repressor SmtB K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D VFMJ11_0462 nodulation protein NolR K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
C XRE family
C PadR family
C Other families
D VFMJ11_1191 transcriptional regulator, RpiR family protein K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor
D VFMJ11_0929 HTH-type transcriptional regulator HexR K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D VFMJ11_2544 biotin-(acetyl-CoA-carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D VFMJ11_2509 DNA-binding protein fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D VFMJ11_0571 trpR; trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D VFMJ11_A0570 oligopeptide-binding protein OppA K11925 sgrR; SgrR family transcriptional regulator
D VFMJ11_1564 HTH-type transcriptional regulator HipB K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D VFMJ11_2145 putative transcriptional regulator, XRE family K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D VFMJ11_1988 FlrA; sigma-54-dependent transcriptional activator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D VFMJ11_0453 transcriptional regulator K20919 vpsR; sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation
D VFMJ11_1081 transcriptional regulator K11914 sfa2; sigma-54 dependent transcriptional regulator
D VFMJ11_A0833 nitric oxide reductase regulator K11914 sfa2; sigma-54 dependent transcriptional regulator
D VFMJ11_1911 anaerobic nitric oxide reductase transcription regulator NorR K12266 norR; anaerobic nitric oxide reductase transcription regulator
D VFMJ11_A0997 anaerobic nitric oxide reductase transcription regulator NorR K12266 norR; anaerobic nitric oxide reductase transcription regulator
D VFMJ11_2263 carbohydrate diacid regulator K02647 cdaR; carbohydrate diacid regulator
D VFMJ11_1433 virulence gene repressor RsaL K07726 K07726; putative transcriptional regulator
D VFMJ11_1427 transcriptional regulator, XRE family K07726 K07726; putative transcriptional regulator
D VFMJ11_1538 helix-turn-helix domain protein K07726 K07726; putative transcriptional regulator
D VFMJ11_A0080 conserved domain protein K07727 K07727; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D VFMJ11_2380 met Apo-repressor, MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D VFMJ11_A0958 bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D VFMJ11_0744 BolA protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D VFMJ11_2707 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D VFMJ11_B0011 DNA-binding protein ParB, putative K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D VFMJ11_A1265 DNA-binding protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D VFMJ11_0841 rfaH; transcriptional activator RfaH K05785 rfaH; transcriptional antiterminator RfaH
D VFMJ11_0263 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D VFMJ11_0844 protein mlc (Making large colonies protein) K02565 nagC; N-acetylglucosamine repressor
D VFMJ11_A0543 protein mlc (Making large colonies protein) K15545 mlc; transcriptional regulator of PTS gene
D VFMJ11_A0358 TENA/THI-4 family protein K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D VFMJ11_A0874 transcriptional regulatory protein TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D VFMJ11_2165 transcriptional activator CadC K03765 cadC; transcriptional activator of cad operon
D VFMJ11_2053 glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor
D VFMJ11_A0348 pspF; psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator
D VFMJ11_A0351 pspC; phage shock protein C K03973 pspC; phage shock protein C
D VFMJ11_0434 conserved hypothetical protein K07735 algH; putative transcriptional regulator
D VFMJ11_2279 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D VFMJ11_0719 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0