+F	Chromosome and associated proteins	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Chromosome and Associated Proteins - Candidatus Vallotia lariciata</h2>
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A<b>Eukaryotic type</b>
B  Sister chromatid cohesion proteins
C    Cohesin complex
C    Adherin complex
C    CTF18-RFC complex
C    Fork protection complex
C    Other sister chromatid cohesion factors
B  Meiosis-specific proteins
C    Cohesin complex and associated proteins
C    Synaptonemal complex
C    DSB formation-related proteins
C    Others
B  Nucleosome assembly factors
C    Histones
C    Histone chaperones
D      Nucleoplasmins
D      NAPs (Nucleosome assembly proteins)
D      CAF-1
D      FACT complex
D      Other Histone chaperones and regulators
C    HMG (high mobility group) proteins
B  Histone modification proteins
C    HATs (histone acetyltransferases)
C    HAT complexes
D      PCAF complex
D      STAGA complex
D      TFTC complex
D      TIP60 complex
D      HBO1 complex
D      MOZ/MORF complex
D      SAGA complex
D      SLIK complex
D      ADA-HAT complex
D      HAT-A2 complex
D      ATAC complex
D      HATB complex
D      NSL complex
D      MSL complex
D      NuA3 complex
D      NuA4 complex
D      SAS complex
C    HDACs (histone deacetylases)
D      Class I HDACs
D      Class II HDACs
D      SIRTs (sirtuins, class III HDACs)
D      Class IV HDACs
C    HDAC complexes
D      Sin3A-HDAC complex
D      BRAF-HDAC complex
D      REST complex
D      SHIP complex
D      MiDAC complex
D      SMART complex
D      Other HDAC associated proteins
C    HMTs (histone methyltransferases)
D      HKMTs (histone lysine methyltransferases)
D      PRMTs (protein arginine metyltransferases)
C    HMT complexes
D      COMPASS/SET1 complex
D      COMPASS/SET1 complex (yeast)
D      MLL-HCF complex
D      MLL3/MLL4 complex
D      Dot1-containing complex
C    Histone demethylases
C    Polycomb repressive complex (PRC) and associated proteins
D      Canonical PRC1 (PRC1.2/1.4)
E        PRC1.4 specific proteins
D      Noncanonical PRC1 (PRC1.1)
D      Noncanonical PRC1 (PRC1.3/1.5)
D      Noncanonical PRC1 (PRC1.6)
D      PRC2.1
D      PRC2.2
D      PR-DUB complex
D      Other PRC associated proteins
C    Sir proteins
C    Other histone modification proteins
B  Chromosome condensation proteins
C    Condensin I
C    Condensin II
C    Other regulators of chromosome condensation
B  Centromeric chromatin formation proteins
C    Kinetochore proteins
D      Centromere proteins
D      CPC (chromosomal passenger complex)
D      KMN network proteins
E        MIS12 complex
E        NDC80 complex
D      Mis6 complex
D      COMA complex
D      NMS complex
E        NDC80 complex
E        MIND kinetochore complex
D      MIS16-MIS18 complex
D      DASH complex
D      CBF3 complex
D      Others
C    SAC (spindle assembly checkpoint) factors
D      Core SAC proteins
D      Motor proteins
E        RZZ complex
E        Dynein complex
D      Protein kinases
D      Others
C    Other centromeric chromatin formation proteins
D      Shugoshin
D      PP2A (protein phosphatase 2A)
B  Heterochromatin formation proteins
C    HP1 (heterochromatin protein 1)
C    MBPs (metylated DNA binding proteins)
C    Other heterochromatin formation proteins
B  Gene silencing
C    RISC (RNA-induced silencing complex)
C    piRNA pathway
C    RNA interference (RNAi) pathway
D      RITS (RNA-induced transcriptional silencing) complex
D      RDRC (RNA-directed RNA polymerase complex)
D      Other RNAi proteins
C    microRNA pathway
D      Microprocessor complex
E        GKR41_00569 rnc; Ribonuclease 3	K03685 rnc; ribonuclease III [EC:3.1.26.3] 
D      RISC loading complex
D      Other miRNA pathway proteins
C    Transposable elements
B  Centrosome formation proteins
C    Centriole proteins
C    Pericentriolar materials (PCM)
D      Centriolar satellite
D      Other PCM proteins
C    Cyclins
C    Kinases and associated factors
D      Kinase anchoring protein
C    Microtubules and associated factors
D      gamma-tubulin ring complex
D      Other tubulins
D      Dynactin complex
D      BRISC complex
D      Microtubule-associated proteins
C    Augmin complex
C    Centrosome duplication proteins
D      Centriole replication proteins
D      Regulators of centriole replication
D      Other centrosome duplication proteins
C    Nde1-Su48 complex
C    LINC complex
C    3M complex
C    Other centriole associated proteins
C    Spindle formation proteins
B  Sister chromatid separation proteins
C    Securin and associated proteins
C    Separase
C    APC/C complex
C    Aurora kinases
D      Regulators of Aurora kinases
C    TACC proteins
C    Polo kinases
C    Early mitotic inhibitors
B  Chromatin remodeling factors
C    BAF complex
C    PBAF complex
C    GBAF(ncBAF) complex
C    CHRAC complex
C    RSF complex
C    WICH complex
C    B-WICH complex
C    NORC complex
C    BRF complex
C    NuRD complex
C    NuRF complex
C    NuRF complex (fruit fly)
C    CERF complex
C    SRCAP complex
C    INO80 complex
C    INO80 complex (yeast)
C    RSC complex
C    SWI/SNF complex
C    SWR1 complex
C    ASTRA complex
C    Other chromatin remodeling factors
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A<b>Prokaryotic type</b>
B  Nucleoid associated proteins
C    HNS (histone-like nucleoid structuring protein)
D      GKR41_00751 DNA-binding protein Bv3F	K03746 hns; DNA-binding protein H-NS 
D      GKR41_p00011 H-NS histone family protein	K03746 hns; DNA-binding protein H-NS 
C    HU (heat unstable protein)
D      GKR41_00011 hupB; DNA-binding protein HU-beta	K03530 hupB; DNA-binding protein HU-beta 
C    IHF (integration host factor)
D      GKR41_00508 ihfA; Integration host factor subunit alpha	K04764 ihfA; integration host factor subunit alpha 
D      GKR41_00603 ihfB; Integration host factor subunit beta	K05788 ihfB; integration host factor subunit beta 
C    Other nucleoid associated proteins
D      GKR41_00001 dnaA; Chromosomal replication initiator protein DnaA	K02313 dnaA; chromosomal replication initiator protein 
D      GKR41_00481 hfq; RNA-binding protein Hfq	K03666 hfq; host factor-I protein 
B  Chromosome partitioning proteins
C    MukBEF complex
C    Condensin-like complex
C    Divisome proteins
D      GKR41_00138 ftsA; Cell division protein FtsA	K03590 ftsA; cell division protein FtsA 
D      GKR41_00365 ftsB; Cell division protein FtsB	K05589 ftsB; cell division protein FtsB 
D      GKR41_00128 penA; putative peptidoglycan D,D-transpeptidase PenA	K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] 
D      GKR41_00260 ftsK; DNA translocase FtsK	K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family 
D      GKR41_00127 ftsL; Cell division protein FtsL	K03586 ftsL; cell division protein FtsL 
D      GKR41_00137 ftsQ; Cell division protein FtsQ	K03589 ftsQ; cell division protein FtsQ 
D      GKR41_00133 ftsW; putative peptidoglycan glycosyltransferase FtsW	K03588 ftsW; cell division protein FtsW 
D      GKR41_00139 ftsZ; Cell division protein FtsZ	K03531 ftsZ; cell division protein FtsZ 
D      GKR41_00248 zapA; cell division protein ZapA	K09888 zapA; cell division protein ZapA 
D      GKR41_00145 zapD; Cell division protein ZapD	K18778 zapD; cell division protein ZapD 
D      GKR41_00445 zapE; Cell division protein ZapE	K06916 zapE; cell division protein ZapE 
C    Inhibitors of FtsZ assembly
D      GKR41_00263 minC; Septum site-determining protein MinC	K03610 minC; septum site-determining protein MinC 
D      GKR41_00264 minD; Septum site-determining protein MinD	K03609 minD; septum site-determining protein MinD 
D      GKR41_00265 minE; Cell division topological specificity factor	K03608 minE; cell division topological specificity factor 
C    Other chromosome partitioning proteins
D      GKR41_00773 mreB; Rod shape-determining protein MreB	K03569 mreB; rod shape-determining protein MreB and related proteins 
D      GKR41_00774 mreC; Cell shape-determining protein MreC	K03570 mreC; rod shape-determining protein MreC 
D      GKR41_00775 mreD; rod shape-determining protein MreD	K03571 mreD; rod shape-determining protein MreD 
D      GKR41_00777 mrdB; Peptidoglycan glycosyltransferase MrdB	K05837 rodA; rod shape determining protein RodA 
D      GKR41_p00015 ParA family protein	K03496 parA; chromosome partitioning protein 
D      GKR41_p00016 ParB/RepB/Spo0J family partition protein	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein 
D      GKR41_00619 parC; DNA topoisomerase 4 subunit A	K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] 
D      GKR41_00620 parE; DNA topoisomerase 4 subunit B	K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] 
D      GKR41_00012 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG	K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme 
D      GKR41_00013 rsmG; Ribosomal RNA small subunit methyltransferase G	K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] 
D      GKR41_00253 apbC; Iron-sulfur cluster carrier protein	K03593 mrp; ATP-binding protein involved in chromosome partitioning 
D      GKR41_00085 engB; putative GTP-binding protein EngB	K03978 engB; GTP-binding protein 
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#Last updated: June 12, 2024