+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Vibrio nigripulchritudo
%
!
AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
D Cap binding complex
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
D Pre-mRNA cleavage factor IIm (CFIIm)
D Cleavage and polyadenylation specificity factor (CPSF) complex
D Cleavage stimulation factor (CSTF) complex
D U7-dependent histone pre-mRNA processing factors
D DRB sensitivity inducing factor (DSIF) complex
D N6-methyltransferase complex
D Poly(A) addition factors
D Negative regulators of mRNA 3' end processing
C Other processing factors
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
D TREX complex
D TREX-2 complex
D Nuclear pore complex
D Ran-mediated transport factors
D eIF4F and regulatory proteins
D APOBEC1-ACF complex
D Other transport factors
C Surveillance factors
D Surveillance complex
D Protein phosphatase 2A
D Other surveillance factors
C Factors involved in mRNA localization
D Cargo complex
D Factors that have mRNA localization signals
D Trans-acting binding proteins
D Other mRNA localization factors
C mRNA cycle factors
D Common to processing body (P body) and stress granule
D P-body specific factors
D Stress granule specific factors
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
D Lsm complex
D 5' exonucleases
D Other 5'-3' decay factors
C 3'-5' decay
D Core exosome factors
D Exosome cofactors
D TRAMP complex
D Ski complex
D Ccr4-NOT complex
D Pan complex
D Other 3'-5' decay factors
C Other degradation factors
D RNases
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AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E VIBNI_A2371 rne; Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
E VIBNI_A2982 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
E VIBNI_A0114 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
E VIBNI_A3208 rnr; Ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
E VIBNI_A3227 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
E VIBNI_A3787 rhlB; ATP-dependent RNA helicase rhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
E VIBNI_B0910 rhlE; ATP-dependent RNA helicase rhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
E VIBNI_A1518 rhlE; ATP-dependent RNA helicase rhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
E VIBNI_B0517 rhlE; ATP-dependent RNA helicase rhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
E VIBNI_B0937 rhlE; ATP-dependent RNA helicase rhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
E VIBNI_B1078 deaD; Cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD) K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
E VIBNI_A3799 recQ; ATP-dependent DNA helicase recQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
E VIBNI_A0592 putative ATP-dependent DNA helicase recQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Other RNA degradosome components
E VIBNI_A0129 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E VIBNI_A2792 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E VIBNI_A3785 rho; Transcription termination factor rho K03628 rho; transcription termination factor Rho
E VIBNI_A3252 pfkA; 6-phosphofructokinase isozyme 1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E VIBNI_A2723 dnaK; Chaperone protein dnaK K04043 dnaK; molecular chaperone DnaK
E VIBNI_A3249 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E VIBNI_A3218 hfq; Protein hfq K03666 hfq; host factor-I protein
D Others
E VIBNI_A0409 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
E VIBNI_A1385 putative Polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
E VIBNI_A2849 pcnB; Polynucleotide adenyl transferase (Poly(A) polymerase I) K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
E VIBNI_A0329 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
E VIBNI_A0151 csrA; Carbon storage regulator K03563 csrA; carbon storage regulator
E VIBNI_A3005 putative EAL and GGDEF domains protein K18765 csrD; RNase E specificity factor CsrD
E VIBNI_A0286 rraA; Regulator of ribonuclease activity A K02553 rraA; regulator of ribonuclease activity A
E VIBNI_A3610 rraA; Regulator of ribonuclease activity A K02553 rraA; regulator of ribonuclease activity A
E VIBNI_A3121 conserved hypothetical protein K09893 rraB; regulator of ribonuclease activity B
E VIBNI_A2948 putative P-loop-containing kinase K06958 rapZ; RNase adapter protein RapZ
E VIBNI_A1893 hrpA; ATP-dependent RNA helicase hrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
E VIBNI_A2845 hrpB; ATP-dependent RNA helicase hrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
D Bacterial Small RNA Regulators
E VIBNI_AmiscRNA_16 RyhB K18507 ryhB; small regulatory RNA RyhB
E VIBNI_BmiscRNA_1 RyhB K18507 ryhB; small regulatory RNA RyhB
E VIBNI_AmiscRNA_14 CsrB K18515 csrB; small regulatory RNA CsrB
E VIBNI_AmiscRNA_13 CsrB K18515 csrB; small regulatory RNA CsrB
E VIBNI_AmiscRNA_1 Spot_42 K18527 spf; small regulatory RNA Spot 42
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
D Cofactors
D Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024