+E Messenger RNA Biogenesis KO #

  Messenger RNA Biogenesis - Vibrio nigripulchritudo

% ! AEukaryotic type B mRNA processing factors C 5' end processing D Capping factors D Cap binding complex C 3' end processing D Pre-mRNA cleavage factor Im (CFIm) D Pre-mRNA cleavage factor IIm (CFIIm) D Cleavage and polyadenylation specificity factor (CPSF) complex D Cleavage stimulation factor (CSTF) complex D U7-dependent histone pre-mRNA processing factors D DRB sensitivity inducing factor (DSIF) complex D N6-methyltransferase complex D Poly(A) addition factors D Negative regulators of mRNA 3' end processing C Other processing factors B mRNA surveillance and transport factors C Transport factors D EJC complex D TREX complex D TREX-2 complex D Nuclear pore complex D Ran-mediated transport factors D eIF4F and regulatory proteins D APOBEC1-ACF complex D Other transport factors C Surveillance factors D Surveillance complex D Protein phosphatase 2A D Other surveillance factors C Factors involved in mRNA localization D Cargo complex D Factors that have mRNA localization signals D Trans-acting binding proteins D Other mRNA localization factors C mRNA cycle factors D Common to processing body (P body) and stress granule D P-body specific factors D Stress granule specific factors B mRNA degradation factors C 5'-3' decay D Decapping complex D Lsm complex D 5' exonucleases D Other 5'-3' decay factors C 3'-5' decay D Core exosome factors D Exosome cofactors D TRAMP complex D Ski complex D Ccr4-NOT complex D Pan complex D Other 3'-5' decay factors C Other degradation factors D RNases # AProkaryotic type B Bacterial mRNA degradation factors C RNA degradosome components D Ribonucreases E VIBNI_A2371 rne; Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] E VIBNI_A2982 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] E VIBNI_A0114 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] E VIBNI_A3208 rnr; Ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] E VIBNI_A3227 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D Helicases E VIBNI_A3787 rhlB; ATP-dependent RNA helicase rhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] E VIBNI_B0910 rhlE; ATP-dependent RNA helicase rhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] E VIBNI_A1518 rhlE; ATP-dependent RNA helicase rhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] E VIBNI_B0517 rhlE; ATP-dependent RNA helicase rhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] E VIBNI_B0937 rhlE; ATP-dependent RNA helicase rhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] E VIBNI_B1078 deaD; Cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD) K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] E VIBNI_A3799 recQ; ATP-dependent DNA helicase recQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] E VIBNI_A0592 putative ATP-dependent DNA helicase recQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Other RNA degradosome components E VIBNI_A0129 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] E VIBNI_A2792 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] E VIBNI_A3785 rho; Transcription termination factor rho K03628 rho; transcription termination factor Rho E VIBNI_A3252 pfkA; 6-phosphofructokinase isozyme 1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C Other RNA degradation factors D Chaperones E VIBNI_A2723 dnaK; Chaperone protein dnaK K04043 dnaK; molecular chaperone DnaK E VIBNI_A3249 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] E VIBNI_A3218 hfq; Protein hfq K03666 hfq; host factor-I protein D Others E VIBNI_A0409 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] E VIBNI_A1385 putative Polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] E VIBNI_A2849 pcnB; Polynucleotide adenyl transferase (Poly(A) polymerase I) K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] E VIBNI_A0329 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] E VIBNI_A0151 csrA; Carbon storage regulator K03563 csrA; carbon storage regulator E VIBNI_A3005 putative EAL and GGDEF domains protein K18765 csrD; RNase E specificity factor CsrD E VIBNI_A0286 rraA; Regulator of ribonuclease activity A K02553 rraA; regulator of ribonuclease activity A E VIBNI_A3610 rraA; Regulator of ribonuclease activity A K02553 rraA; regulator of ribonuclease activity A E VIBNI_A3121 conserved hypothetical protein K09893 rraB; regulator of ribonuclease activity B E VIBNI_A2948 putative P-loop-containing kinase K06958 rapZ; RNase adapter protein RapZ E VIBNI_A1893 hrpA; ATP-dependent RNA helicase hrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] E VIBNI_A2845 hrpB; ATP-dependent RNA helicase hrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6] D Bacterial Small RNA Regulators E VIBNI_AmiscRNA_16 RyhB K18507 ryhB; small regulatory RNA RyhB E VIBNI_BmiscRNA_1 RyhB K18507 ryhB; small regulatory RNA RyhB E VIBNI_AmiscRNA_14 CsrB K18515 csrB; small regulatory RNA CsrB E VIBNI_AmiscRNA_13 CsrB K18515 csrB; small regulatory RNA CsrB E VIBNI_AmiscRNA_1 Spot_42 K18527 spf; small regulatory RNA Spot 42 B Archeal mRNA degradation factors C Exosome components D Core exosome D Cofactors D Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024