+F Repair protein KO
#
DNA Repair and Recombination Proteins - Vibrio nigripulchritudo
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D VIBNI_B0941 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D VIBNI_B1750 phrA; Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D VIBNI_A0451 cry2; Cryptochrome-like protein cry2 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E VIBNI_A0294 ung; uracil-DNA-glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E VIBNI_A0046 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E VIBNI_A0903 putative EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D VIBNI_A0169 mutT; Mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D VIBNI_B0427 putative Nudix hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D VIBNI_A0859 putative NTP pyrophosphohydrolase including oxidative damage repair enzyme K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D VIBNI_A1704 putative NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D VIBNI_A3422 putative NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D VIBNI_B0941 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D VIBNI_B1750 phrA; Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D VIBNI_A0451 cry2; Cryptochrome-like protein cry2 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D VIBNI_B0546 putative deoxyribodipyrimidine photolyase related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
C BER (base exicision repair)
D DNA glycosylases
E VIBNI_A0294 ung; uracil-DNA-glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E VIBNI_B0940 putative Ada, Adenosine deaminase domain fused with AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E VIBNI_A0046 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E VIBNI_B0781 tag; DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E VIBNI_A1367 tag; 3-methyladenine DNA glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E VIBNI_A3695 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E VIBNI_A0903 putative EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E VIBNI_A2201 xthA; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E VIBNI_A0292 nfo; Endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D RecJ
E VIBNI_A0319 recJ; Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E VIBNI_A2621 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E VIBNI_A3404 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E VIBNI_A3032 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
E VIBNI_A0912 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
E VIBNI_A1307 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C
E VIBNI_A0346 Putative DNA helicase, UvrD/REP type K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E VIBNI_A3804 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E VIBNI_B1961 Putative DNA helicase, UvrD/REP type K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E VIBNI_A3404 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E VIBNI_A2621 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F VIBNI_A3326 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F VIBNI_A3325 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F VIBNI_A3153 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F VIBNI_A3711 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F VIBNI_A1071 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E VIBNI_A0139 mutS; DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E VIBNI_A3220 mutL; DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
E VIBNI_A0327 mutH; DNA mismatch repair protein mutH K03573 mutH; DNA mismatch repair protein MutH
D DNA exonucleases
E VIBNI_A1418 sbcB; Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E VIBNI_A2769 xseA; Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E VIBNI_A0665 xseB; Exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E VIBNI_A2489 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E VIBNI_A0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E VIBNI_A2967 putative DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E VIBNI_A2710 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E VIBNI_A2355 putative DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E VIBNI_A2477 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E VIBNI_A2012 putative DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E VIBNI_A3297 putative Ribonuclease H-like K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E VIBNI_A0815 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
E VIBNI_A0447 putative DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D DNA ligase
E VIBNI_A2621 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E VIBNI_A0346 Putative DNA helicase, UvrD/REP type K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E VIBNI_A3804 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E VIBNI_B1961 Putative DNA helicase, UvrD/REP type K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E VIBNI_A3028 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E VIBNI_A3577 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E VIBNI_A0546 recB; Exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E VIBNI_A0545 recC; Exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E VIBNI_A0547 recD; Exodeoxyribonuclease V subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E VIBNI_A0147 recA; DNA strand exchange and recombination protein with protease and nuclease activityProtein recA K03553 recA; recombination protein RecA
E VIBNI_A2266 ruvA; Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA
E VIBNI_A2265 ruvB; Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E VIBNI_A2267 ruvC; Crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E VIBNI_A3604 priA; Primosome factor n' (replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E VIBNI_A3551 priB; Primosomal replication protein N K02686 priB; primosomal replication protein N
E VIBNI_A2302 putative Primosomal replication priB and priC K04067 priC; primosomal replication protein N''
E VIBNI_A1418 sbcB; Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E VIBNI_B1598 putative exonuclease subunit SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E VIBNI_B1599 sbcD; Nuclease sbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E VIBNI_A0147 recA; DNA strand exchange and recombination protein with protease and nuclease activityProtein recA K03553 recA; recombination protein RecA
E VIBNI_A0500 radA; DNA repair protein radA K04485 radA; DNA repair protein RadA/Sms
E VIBNI_A0003 recF; DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF
E VIBNI_A3721 recG; ATP-dependent DNA helicase recG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E VIBNI_A0319 recJ; Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E VIBNI_A0116 recO; DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O)
E VIBNI_A0817 recR; Recombination protein recR K06187 recR; recombination protein RecR
E VIBNI_A0626 recN; DNA repair protein recN K03631 recN; DNA repair protein RecN (Recombination protein N)
E VIBNI_A0404 rdgC; Recombination-associated protein rdgC K03554 rdgC; recombination associated protein RdgC
E VIBNI_A2266 ruvA; Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA
E VIBNI_A2265 ruvB; Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E VIBNI_A2267 ruvC; Crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
E VIBNI_A2212 putative DEAD-like helicase superfamily K19789 radD; DNA repair protein RadD
D Archaeal homologous recombinant proteins
E VIBNI_B1598 putative exonuclease subunit SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E VIBNI_B1599 sbcD; Nuclease sbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F VIBNI_A2050 gyrA; DNA gyrase (type II topoisomerase), subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F VIBNI_A0004 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F VIBNI_A2121 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F VIBNI_A3315 hupA; DNA-binding protein HU-alpha K05787 hupA; DNA-binding protein HU-alpha
F VIBNI_A2425 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F VIBNI_A0319 recJ; Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F VIBNI_A0116 recO; DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O)
F VIBNI_A0817 recR; Recombination protein recR K06187 recR; recombination protein RecR
F VIBNI_A2621 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F VIBNI_A3307 fis; DNA-binding protein fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F VIBNI_A1410 ihfA; Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
F VIBNI_A2333 ihfB; Integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
E Supressor
F VIBNI_A1418 sbcB; Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
F VIBNI_A3799 recQ; ATP-dependent DNA helicase recQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F VIBNI_A0592 putative ATP-dependent DNA helicase recQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F VIBNI_A3032 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
F VIBNI_A0912 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
F VIBNI_A2294 hns; DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D VIBNI_A0584 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D VIBNI_A0147 recA; DNA strand exchange and recombination protein with protease and nuclease activityProtein recA K03553 recA; recombination protein RecA
D VIBNI_A3357 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D VIBNI_A0626 recN; DNA repair protein recN K03631 recN; DNA repair protein RecN (Recombination protein N)
D VIBNI_A1305 polB; DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7]
D VIBNI_A2296 putative Nucleotidyltransferase/DNA polymerase involved in DNA repair K14161 imuB; protein ImuB
D VIBNI_A2297 putative Bacterial DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D VIBNI_A3028 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D VIBNI_A0148 putative Regulatory protein recX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D VIBNI_A3494 rep; ATP-dependent DNA helicase rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D VIBNI_B1250 putative DNA helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4]
D VIBNI_A2531 putative DinG family ATP-dependent helicase YoaA K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D VIBNI_A2300 putative Rad3-related DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D VIBNI_A0169 mutT; Mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D VIBNI_B0427 putative Nudix hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D VIBNI_A0859 putative NTP pyrophosphohydrolase including oxidative damage repair enzyme K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D VIBNI_A1704 putative NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D VIBNI_A3422 putative NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D VIBNI_B0190 rnr; Ribonucleoside-diphosphate reductase large chain (Ribonucleotide reductase large subunit) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D VIBNI_A2053 nrdA; ribonucleoside diphosphate reductase 1, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D VIBNI_A2054 nrdB; Ribonucleoside-diphosphate reductase 1 subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D VIBNI_B0191 Rrm2b; Ribonucleoside-diphosphate reductase subunit M2 B K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024