+E Transcription factors KO
#
Transcription Factors - Vibrio parahaemolyticus RIMD 2210633
%
!
AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
#
AProkaryotic type
B Helix-turn-helix
C AraC family
D VPA1678 putative transcriptional regulator, AraC/XylS family K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D VP1699 transcriptional regulator ExsA K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA
D VP0854 putative transcriptional regulator, AraC/XylS family K19693 tfoS; AraC family transcriptional regulator, chitin signaling transcriptional activator
D VPA0400 putative transcription regulator K13652 K13652; AraC family transcriptional regulator
D VPA0045 ada regulatory protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D VP0692 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D VP0034 transcriptional activator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D VP1976 transcriptional activator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D VP0527 transcriptional activator protein NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D VP2752 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D VP0581 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D VPA0456 putative transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D VP2595 chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D VP0350 transcriptional regulator, LysR family K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D VP2184 AphB/LysR family K10918 aphB; LysR family transcriptional regulator, transcriptional activator AphB
D VP1101 cys regulon transcriptional activator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D VPA1694 putative D-serine dehydratase (deaminase) transcriptional activator K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator
D VPA0041 transcriptional regulator, LysR family K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
D VP2387 transcriptional regulator, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D VP2393 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D VP2396 LacI-family regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D VPA1082 ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D VP0252 transcriptional repressor, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D VPA0814 fructose repressor K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D VP0709 trehalose operon repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D VP1030 transcriptional regulator, LacI family K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D VPA0232 putative transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D VP0058 gluconate utilization system Gnt-I transcriptional repressor K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D VP2402 regulator of ebg operon K12113 ebgR; LacI family transcriptional regulator, ebg operon repressor
C GntR family
D VP1277 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D VP2071 fatty acid metabolism regulator protein K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D VP2520 pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D VPA1701 putative transcriptional regulatory protein K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D VPA1237 putative GntR-family regulatory protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D VPA1114 putative transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D VP0040 transcriptional regulator, TetR family K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor
D VP0180 transcriptional regulator, TetR family K05501 slmA; TetR/AcrR family transcriptional regulator
D VP2516 OpaR K10913 hapR; TetR/AcrR family transcriptional regulator, hemagglutinin/protease regulatory protein
D VPA1415 putative transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D VP2941 transcriptional regulator, TetR family K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
C Lrp/AsnC family
D VP0072 transcriptional regulator AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D VP1104 leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D VPA1717 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D VPA1214 putative transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D VP0947 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D VPA1447 putative transcriptional regulator, LuxR family K20918 vpsT; LuxR family transcriptional regulator, positive regulator of biofilm formation
D VPA1623 malT regulatory protein K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D VPA1219 putative transcription regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D VPA1682 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D VPA0662 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D VP2894 transcriptional regulator, MerR family K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D VPA0335 SoxR protein K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
C Fur family
D VP0833 ferric uptake regulatory protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D VP2729 putative zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D VPA0076 putative regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D VP2793 cyclic AMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D VP1962 putative transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D VP1536 fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D VP0595 conserved hypothetical protein K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D VP2808 conserved hypothetical protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D VP2971 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D VP0529 transcriptional activator HlyU K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
C XRE family
C PadR family
D VP2762 conserved hypothetical protein K10917 aphA; PadR family transcriptional regulator, regulatory protein AphA
C Other families
D VPA1741 conserved hypothetical protein K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor
D VP1236 conserved hypothetical protein K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D VP2931 BirA bifunctional protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D VP2885 factor-for-inversion stimulation protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D VP0553 Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D VPA0864 putative ABC transporter periplasmic solute binding protein K11925 sgrR; SgrR family transcriptional regulator
D VP1778 putative transcriptional regulator K14056 puuR; HTH-type transcriptional regulator, repressor for puuD
D VP2144 putative transcription regulator protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D VP2253 polar flagellar protein FlaK K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D VP1136 putative transcription regulator TxR K18219 txr; sigma-54 dependent transcriptional regulator, tetracycline resistant transcriptional regulator
D VP0514 sigma-54 dependent transcriptional regulator K20919 vpsR; sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation
D VP1704 sigma-54 dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D VP1391 putative transcriptional regulator K11914 sfa2; sigma-54 dependent transcriptional regulator
D VP1190 putative sigma-54 dependent transcriptional regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator
D VPA0115 conserved hypothetical protein K02647 cdaR; carbohydrate diacid regulator
B Ribbon-helix-helix
C CopG family
C Other families
D VP2766 met repressor K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D VPA1726 putative proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D VP2352 cell division protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D VP3077 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D VPA1751 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D VP0825 putative transcriptional activator RfaH K05785 rfaH; transcriptional antiterminator RfaH
D VP0324 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D VP0828 N-acetylglucosamine repressor K02565 nagC; N-acetylglucosamine repressor
D VP2038 transcriptional regulator, ROK family K15545 mlc; transcriptional regulator of PTS gene
D VP0368 mannitol operon repressor K02562 mtlR; mannitol operon repressor
D VPA0132 putative transcriptional activator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D VP1869 transcriptional regulator TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D VP2893 putative transcriptional activator CadC K03765 cadC; transcriptional activator of cad operon
D VP2274 putative glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor
D VP1172 psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator
D VP1175 phage shock protein C K03973 pspC; phage shock protein C
D VP0367 putative glycerol metabolism operon regulatory protein K05880 dhaR; transcriptional activator for dhaKLM operon
D VPA0988 regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase
D VP2612 conserved hypothetical protein K07735 algH; putative transcriptional regulator
D VP2500 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D VP0678 conserved hypothetical protein K07738 nrdR; transcriptional repressor NrdR
D VP0675 transcriptional regulator Crl K11926 crl; sigma factor-binding protein Crl
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
#
Classification taken and modified from TRANSFAC 7.0