+E Transcription factors KO #

  Transcription Factors - Vibrio parahaemolyticus RIMD 2210633

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D VPA1678 putative transcriptional regulator, AraC/XylS family K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein D VP1699 transcriptional regulator ExsA K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA D VP0854 putative transcriptional regulator, AraC/XylS family K19693 tfoS; AraC family transcriptional regulator, chitin signaling transcriptional activator D VPA0400 putative transcription regulator K13652 K13652; AraC family transcriptional regulator D VPA0045 ada regulatory protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] C LysR family D VP0692 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D VP0034 transcriptional activator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D VP1976 transcriptional activator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D VP0527 transcriptional activator protein NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D VP2752 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D VP0581 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D VPA0456 putative transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D VP2595 chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D VP0350 transcriptional regulator, LysR family K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon D VP2184 AphB/LysR family K10918 aphB; LysR family transcriptional regulator, transcriptional activator AphB D VP1101 cys regulon transcriptional activator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D VPA1694 putative D-serine dehydratase (deaminase) transcriptional activator K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator D VPA0041 transcriptional regulator, LysR family K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family D VP2387 transcriptional regulator, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor C LacI family D VP2393 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D VP2396 LacI-family regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D VPA1082 ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D VP0252 transcriptional repressor, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D VPA0814 fructose repressor K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D VP0709 trehalose operon repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor D VP1030 transcriptional regulator, LacI family K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor D VPA0232 putative transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D VP0058 gluconate utilization system Gnt-I transcriptional repressor K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D VP2402 regulator of ebg operon K12113 ebgR; LacI family transcriptional regulator, ebg operon repressor C GntR family D VP1277 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D VP2071 fatty acid metabolism regulator protein K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D VP2520 pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D VPA1701 putative transcriptional regulatory protein K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor D VPA1237 putative GntR-family regulatory protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family D VPA1114 putative transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D VP0040 transcriptional regulator, TetR family K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor D VP0180 transcriptional regulator, TetR family K05501 slmA; TetR/AcrR family transcriptional regulator D VP2516 OpaR K10913 hapR; TetR/AcrR family transcriptional regulator, hemagglutinin/protease regulatory protein D VPA1415 putative transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D VP2941 transcriptional regulator, TetR family K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator C Lrp/AsnC family D VP0072 transcriptional regulator AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D VP1104 leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D VPA1717 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D VPA1214 putative transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D VP0947 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D VPA1447 putative transcriptional regulator, LuxR family K20918 vpsT; LuxR family transcriptional regulator, positive regulator of biofilm formation D VPA1623 malT regulatory protein K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein C MarR family D VPA1219 putative transcription regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D VPA1682 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D VPA0662 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D VP2894 transcriptional regulator, MerR family K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA D VPA0335 SoxR protein K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR C Fur family D VP0833 ferric uptake regulatory protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D VP2729 putative zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D VPA0076 putative regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor C CRP/FNR family D VP2793 cyclic AMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D VP1962 putative transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D VP1536 fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D VP0595 conserved hypothetical protein K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D VP2808 conserved hypothetical protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D VP2971 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D VP0529 transcriptional activator HlyU K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator C XRE family C PadR family D VP2762 conserved hypothetical protein K10917 aphA; PadR family transcriptional regulator, regulatory protein AphA C Other families D VPA1741 conserved hypothetical protein K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor D VP1236 conserved hypothetical protein K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D VP2931 BirA bifunctional protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D VP2885 factor-for-inversion stimulation protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D VP0553 Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D VPA0864 putative ABC transporter periplasmic solute binding protein K11925 sgrR; SgrR family transcriptional regulator D VP1778 putative transcriptional regulator K14056 puuR; HTH-type transcriptional regulator, repressor for puuD D VP2144 putative transcription regulator protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D VP2253 polar flagellar protein FlaK K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D VP1136 putative transcription regulator TxR K18219 txr; sigma-54 dependent transcriptional regulator, tetracycline resistant transcriptional regulator D VP0514 sigma-54 dependent transcriptional regulator K20919 vpsR; sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation D VP1704 sigma-54 dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D VP1391 putative transcriptional regulator K11914 sfa2; sigma-54 dependent transcriptional regulator D VP1190 putative sigma-54 dependent transcriptional regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator D VPA0115 conserved hypothetical protein K02647 cdaR; carbohydrate diacid regulator B Ribbon-helix-helix C CopG family C Other families D VP2766 met repressor K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D VPA1726 putative proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D VP2352 cell division protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D VP3077 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D VPA1751 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D VP0825 putative transcriptional activator RfaH K05785 rfaH; transcriptional antiterminator RfaH D VP0324 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D VP0828 N-acetylglucosamine repressor K02565 nagC; N-acetylglucosamine repressor D VP2038 transcriptional regulator, ROK family K15545 mlc; transcriptional regulator of PTS gene D VP0368 mannitol operon repressor K02562 mtlR; mannitol operon repressor D VPA0132 putative transcriptional activator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D VP1869 transcriptional regulator TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D VP2893 putative transcriptional activator CadC K03765 cadC; transcriptional activator of cad operon D VP2274 putative glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor D VP1172 psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator D VP1175 phage shock protein C K03973 pspC; phage shock protein C D VP0367 putative glycerol metabolism operon regulatory protein K05880 dhaR; transcriptional activator for dhaKLM operon D VPA0988 regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase D VP2612 conserved hypothetical protein K07735 algH; putative transcriptional regulator D VP2500 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D VP0678 conserved hypothetical protein K07738 nrdR; transcriptional repressor NrdR D VP0675 transcriptional regulator Crl K11926 crl; sigma factor-binding protein Crl ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024 #
Classification taken and modified from TRANSFAC 7.0