+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Vitis riparia (riverbank grape)
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 117909397 mRNA cap guanine-N7 methyltransferase 1 isoform X1 K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 117929308 mRNA cap guanine-N7 methyltransferase 2 K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 117920000 mRNA-capping enzyme isoform X1 K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 117904844 cyclin-dependent kinase D-3 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 117929549 cyclin-dependent kinase D-1 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
D Cap binding complex
E 117917143 nuclear cap-binding protein subunit 1 isoform X1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 117927204 nuclear cap-binding protein subunit 2 isoform X1 K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 117924507 pre-mRNA cleavage factor Im 25 kDa subunit 1 isoform X1 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 117931526 pre-mRNA cleavage factor Im 25 kDa subunit 2 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 117931626 pre-mRNA cleavage factor Im 25 kDa subunit 2 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 117933585 pre-mRNA cleavage factor Im 25 kDa subunit 2-like isoform X1 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 117908506 uncharacterized PE-PGRS family protein PE_PGRS20 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
E 117914101 cleavage and polyadenylation specificity factor subunit 6 isoform X1 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 117930856 protein CLP1 homolog K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 117931352 protein CLP1 homolog K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 117919829 polyadenylation and cleavage factor homolog 4 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
E 117922973 polyadenylation and cleavage factor homolog 4 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 117933576 cleavage and polyadenylation specificity factor subunit 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 117933757 cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 117910797 cleavage and polyadenylation specificity factor subunit 3-I-like isoform X1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 117926485 cleavage and polyadenylation specificity factor subunit 3-I isoform X1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 117927103 cleavage and polyadenylation specificity factor subunit 3-I isoform X1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 117927280 cleavage and polyadenylation specificity factor subunit 3-I-like isoform X1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 117923590 30-kDa cleavage and polyadenylation specificity factor 30 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 117929249 flowering time control protein FY isoform X1 K15542 PFS2; polyadenylation factor subunit 2
E 117912168 protein ANTHESIS POMOTING FACTOR 1 isoform X1 K14962 WDR82; COMPASS component SWD2
E 117929483 protein ANTHESIS POMOTING FACTOR 1 K14962 WDR82; COMPASS component SWD2
E 117914767 serine/threonine-protein phosphatase PP1 isozyme 3-like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 117916374 serine/threonine-protein phosphatase PP1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 117921101 serine/threonine-protein phosphatase PP1-like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 117928649 serine/threonine-protein phosphatase PP1 isozyme 4 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 117930245 LOW QUALITY PROTEIN: serine/threonine-protein phosphatase PP1-like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 117931023 LOW QUALITY PROTEIN: serine/threonine-protein phosphatase PP1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 117931169 serine/threonine-protein phosphatase PP1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 117916093 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 117905031 cleavage stimulation factor subunit 50 isoform X1 K14406 CSTF1; cleavage stimulation factor subunit 1
E 117906188 cleavage stimulating factor 64-like isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 117906905 cleavage stimulating factor 64 K14407 CSTF2; cleavage stimulation factor subunit 2
E 117925073 cleavage stimulation factor subunit 77 isoform X1 K14408 CSTF3; cleavage stimulation factor subunit 3
E 117907037 uncharacterized protein LOC117907037 isoform X1 K06100 SYMPK; symplekin
E 117920242 uncharacterized protein LOC117920242 K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 117928561 small nuclear ribonucleoprotein-associated proteins B and B' K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 117906554 small nuclear ribonucleoprotein SmD3b-like K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 117911360 small nuclear ribonucleoprotein SmD3b-like K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 117904750 small nuclear ribonucleoprotein E-like K11097 SNRPE; small nuclear ribonucleoprotein E
E 117917516 probable small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 117921344 probable small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G
E 117933757 cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 117910797 cleavage and polyadenylation specificity factor subunit 3-I-like isoform X1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 117926485 cleavage and polyadenylation specificity factor subunit 3-I isoform X1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 117927103 cleavage and polyadenylation specificity factor subunit 3-I isoform X1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 117927280 cleavage and polyadenylation specificity factor subunit 3-I-like isoform X1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 117906188 cleavage stimulating factor 64-like isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 117906905 cleavage stimulating factor 64 K14407 CSTF2; cleavage stimulation factor subunit 2
E 117907037 uncharacterized protein LOC117907037 isoform X1 K06100 SYMPK; symplekin
E 117920242 uncharacterized protein LOC117920242 K06100 SYMPK; symplekin
D DRB sensitivity inducing factor (DSIF) complex
E 117923478 transcription elongation factor SPT4 homolog 2 K15171 SUPT4H1; transcription elongation factor SPT4
E 117906721 putative transcription elongation factor SPT5 homolog 1 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 117907648 N6-adenosine-methyltransferase MT-A70-like K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 117933535 N6-adenosine-methyltransferase non-catalytic subunit MTB K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 117911072 RNA N6-adenosine-methyltransferase mettl16 isoform X1 K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 117905080 FKBP12-interacting protein of 37 kDa isoform X1 K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 117931343 uncharacterized protein LOC117931343 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 117933507 uncharacterized protein LOC117933507 isoform X1 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 117919880 E3 ubiquitin-protein ligase HAKAI homolog K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 117904538 nuclear poly(A) polymerase 1-like K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 117914583 nuclear poly(A) polymerase 3 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 117921508 nuclear poly(A) polymerase 4-like isoform X1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 117923900 nuclear poly(A) polymerase 1-like isoform X1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 117924812 nuclear poly(A) polymerase 4-like K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 117928344 nuclear poly(A) polymerase 4-like K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
D Negative regulators of mRNA 3' end processing
E 117917940 BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 117922959 protein BREAST CANCER SUSCEPTIBILITY 1 homolog K10683 BARD1; BRCA1-associated RING domain protein 1
E 117930320 zinc finger CCCH domain-containing protein 41 K13192 RBM26; RNA-binding protein 26
E 117913662 RNA demethylase ALKBH9B K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 117918857 RNA demethylase ALKBH10B-like K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 117926147 RNA demethylase ALKBH9B-like K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
C Other processing factors
D 117934375 KIN17-like protein K13102 KIN; DNA/RNA-binding protein KIN17
D 117922330 methyltransferase-like protein 22 isoform X1 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 117916096 serrate RNA effector molecule K27103 SRRT; serrate RNA effector molecule
D 117928131 serrate RNA effector molecule-like isoform X1 K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 117913111 RNA-binding protein Y14 K12876 RBM8A; RNA-binding protein 8A
E 117909563 protein mago nashi homolog 2 K12877 MAGOH; protein mago nashi
E 117916225 THO complex subunit 4A isoform X1 K12881 THOC4; THO complex subunit 4
E 117929403 THO complex subunit 4A-like K12881 THOC4; THO complex subunit 4
E 117929790 THO complex subunit 4D isoform X1 K12881 THOC4; THO complex subunit 4
E 117912607 DEAD-box ATP-dependent RNA helicase 15 K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 117922058 DEAD-box ATP-dependent RNA helicase 15-like K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 117916056 eukaryotic initiation factor 4A-3 K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 117932444 histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 117926993 pinin K13114 PNN; pinin
E 117906620 uncharacterized protein LOC117906620 isoform X1 K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 117917400 apoptotic chromatin condensation inducer in the nucleus isoform X1 K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 117908873 serine/arginine-rich splicing factor SR45 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 117916253 serine/arginine repetitive matrix protein 1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 117927479 THO complex subunit 1-like isoform X1 K12878 THOC1; THO complex subunit 1
E 117929199 THO complex subunit 1 K12878 THOC1; THO complex subunit 1
E 117911491 THO complex subunit 2 K12879 THOC2; THO complex subunit 2
E 117909221 THO complex subunit 3 K12880 THOC3; THO complex subunit 3
E 117916225 THO complex subunit 4A isoform X1 K12881 THOC4; THO complex subunit 4
E 117929403 THO complex subunit 4A-like K12881 THOC4; THO complex subunit 4
E 117929790 THO complex subunit 4D isoform X1 K12881 THOC4; THO complex subunit 4
E 117906757 THO complex subunit 5B isoform X1 K13174 THOC5; THO complex subunit 5
D TREX-2 complex
E 117925024 enhanced ethylene response protein 5 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 117904907 protein DSS1 HOMOLOG ON CHROMOSOME V-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 117921022 protein DSS1 HOMOLOG ON CHROMOSOME V-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 117922667 protein DSS1 HOMOLOG ON CHROMOSOME V-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 117931389 protein DSS1 HOMOLOG ON CHROMOSOME V-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 117930177 transcription and mRNA export factor ENY2 isoform X1 K11368 ENY2; enhancer of yellow 2 transcription factor
E 117914948 SAC3 family protein B K23719 SAC3; nuclear mRNA export protein SAC3
E 117927449 LOW QUALITY PROTEIN: SAC3 family protein C-like K23719 SAC3; nuclear mRNA export protein SAC3
E 117928847 SAC3 family protein C K23719 SAC3; nuclear mRNA export protein SAC3
D Nuclear pore complex
E 117908622 nuclear-pore anchor isoform X1 K09291 TPR; nucleoprotein TPR
E 117921511 protein RAE1-like K14298 RAE1; mRNA export factor
E 117927236 protein RAE1 K14298 RAE1; mRNA export factor
E 117908862 protein transport protein SEC13 homolog A-like K14004 SEC13; protein transport protein SEC13
E 117909263 protein transport protein SEC13 homolog B-like K14004 SEC13; protein transport protein SEC13
E 117928794 protein transport protein SEC13 homolog B-like K14004 SEC13; protein transport protein SEC13
E 117928796 protein transport protein SEC13 homolog B-like K14004 SEC13; protein transport protein SEC13
E 117930982 protein transport protein SEC13 homolog B K14004 SEC13; protein transport protein SEC13
E 117913576 nuclear pore complex protein NUP85 K14304 NUP85; nuclear pore complex protein Nup85
E 117924601 nuclear pore complex protein NUP43 K14305 NUP43; nuclear pore complex protein Nup43
E 117933753 uncharacterized protein LOC117933753 K14295 NUP50; nuclear pore complex protein Nup50
E 117911665 nuclear pore complex protein NUP54 K14308 NUP54; nuclear pore complex protein Nup54
E 117931872 nuclear pore complex protein NUP62 K14306 NUP62; nuclear pore complex protein Nup62
E 117928903 nuclear pore complex protein NUP88 K14318 NUP88; nuclear pore complex protein Nup88
E 117920386 nuclear pore complex protein NUP93A-like isoform X1 K14309 NUP93; nuclear pore complex protein Nup93
E 117922021 nuclear pore complex protein NUP96 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 117928031 nuclear pore complex protein NUP98A K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 117922091 nuclear pore complex protein NUP107 K14301 NUP107; nuclear pore complex protein Nup107
E 117926633 nuclear pore complex protein NUP133 isoform X1 K14300 NUP133; nuclear pore complex protein Nup133
E 117911487 uncharacterized protein LOC117911487 isoform X1 K14311 NUP188; nuclear pore complex protein Nup188
E 117911432 nuclear pore complex protein NUP155 K14312 NUP155; nuclear pore complex protein Nup155
E 117911047 nuclear pore complex protein NUP160 K14303 NUP160; nuclear pore complex protein Nup160
E 117922764 nuclear pore complex protein NUP35 K14313 NUP35; nuclear pore complex protein Nup53
E 117924488 nuclear pore complex protein NUP205 isoform X1 K14310 NUP205; nuclear pore complex protein Nup205
E 117930239 nuclear pore complex protein GP210 K14314 NUP210; nuclear pore complex protein Nup210
E 117915748 nuclear pore complex protein NUP214 isoform X1 K14317 NUP214; nuclear pore complex protein Nup214
E 117918645 nuclear pore complex protein NUP58 K14307 NUPL1; nucleoporin p58/p45
E 117922089 zinc finger CCCH domain-containing protein 16 isoform X1 K14321 NUPL2; nucleoporin-like protein 2
E 117904693 uncharacterized protein LOC117904693 K14315 NDC1; nucleoporin NDC1
E 117904367 protein SEH1 isoform X1 K14299 SEH1; nucleoporin SEH1
E 117921186 aladin isoform X1 K14320 AAAS; aladin
E 117913639 protein GLE1 K18723 GLE1; nucleoporin GLE1
D Ran-mediated transport factors
E 117912888 GTP-binding nuclear protein Ran-3 K07936 RAN; GTP-binding nuclear protein Ran
E 117912889 GTP-binding nuclear protein Ran-3-like K07936 RAN; GTP-binding nuclear protein Ran
E 117922712 GTP-binding nuclear protein Ran-3-like K07936 RAN; GTP-binding nuclear protein Ran
E 117925157 GTP-binding nuclear protein Ran-3-like K07936 RAN; GTP-binding nuclear protein Ran
E 117928786 plant UBX domain-containing protein 10 K18726 FAF2; FAS-associated factor 2
E 117934390 plant UBX domain-containing protein 10-like K18726 FAF2; FAS-associated factor 2
E 117904732 cell division cycle protein 48 homolog K13525 VCP; transitional endoplasmic reticulum ATPase
E 117916884 cell division cycle protein 48 homolog K13525 VCP; transitional endoplasmic reticulum ATPase
E 117920196 cell division cycle protein 48 homolog K13525 VCP; transitional endoplasmic reticulum ATPase
E 117911897 protein N-lysine methyltransferase METTL21A-like isoform X1 K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 117915614 protein N-lysine methyltransferase METTL21A-like isoform X1 K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 117925822 uncharacterized protein LOC117925822 K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 117933446 protein EXPORTIN 1A K14290 XPO1; exportin-1
E 117919623 exportin-7-like isoform X1 K18460 XPO7; exportin-7
E 117929306 exportin-7-like isoform X1 K18460 XPO7; exportin-7
E 117914616 RAN GTPase-activating protein 2 K14319 RANGAP1; Ran GTPase-activating protein 1
E 117917993 RAN GTPase-activating protein 1-like K14319 RANGAP1; Ran GTPase-activating protein 1
D eIF4F and regulatory proteins
E 117914688 eukaryotic translation initiation factor K03259 EIF4E; translation initiation factor 4E
E 117920825 eukaryotic translation initiation factor NCBP K03259 EIF4E; translation initiation factor 4E
E 117924372 eukaryotic translation initiation factor 4E-1-like K03259 EIF4E; translation initiation factor 4E
E 117912932 eukaryotic initiation factor 4A-11 K03257 EIF4A; translation initiation factor 4A
E 117918780 eukaryotic initiation factor 4A isoform X1 K03257 EIF4A; translation initiation factor 4A
E 117922103 eukaryotic initiation factor 4A-8-like K03257 EIF4A; translation initiation factor 4A
E 117924822 uncharacterized protein LOC117924822 K03257 EIF4A; translation initiation factor 4A
E 117912484 eukaryotic translation initiation factor-like K03260 EIF4G; translation initiation factor 4G
E 117924983 eukaryotic translation initiation factor K03260 EIF4G; translation initiation factor 4G
E 117932299 LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4G-like K03260 EIF4G; translation initiation factor 4G
E 117932300 LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4G-like K03260 EIF4G; translation initiation factor 4G
E 117911819 eukaryotic translation initiation factor 4B3-like K03258 EIF4B; translation initiation factor 4B
E 117911820 LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4B3-like K03258 EIF4B; translation initiation factor 4B
E 117914285 eukaryotic translation initiation factor 4B2-like K03258 EIF4B; translation initiation factor 4B
E 117913123 protein PIR K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 117916169 DEAD-box ATP-dependent RNA helicase 37-like K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 117920849 DEAD-box ATP-dependent RNA helicase 37-like K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 117924487 DEAD-box ATP-dependent RNA helicase 52C-like K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 117928701 DEAD-box ATP-dependent RNA helicase 37-like K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 117922773 uncharacterized protein LOC117922773 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 117929866 uncharacterized protein LOC117929866 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 117906578 polyadenylate-binding protein 8-like isoform X1 K13126 PABPC; polyadenylate-binding protein
E 117907691 polyadenylate-binding protein 3-like K13126 PABPC; polyadenylate-binding protein
E 117911367 polyadenylate-binding protein 2-like K13126 PABPC; polyadenylate-binding protein
E 117918431 polyadenylate-binding protein 2-like K13126 PABPC; polyadenylate-binding protein
E 117919639 polyadenylate-binding protein 7 K13126 PABPC; polyadenylate-binding protein
E 117921597 polyadenylate-binding protein 4-like isoform X1 K13126 PABPC; polyadenylate-binding protein
E 117916892 DExH-box ATP-dependent RNA helicase DExH11 K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 117913673 translation machinery-associated protein 22 K24272 DENR; density-regulated protein
E 117925734 translation machinery-associated protein 22-like K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
D Other transport factors
E 117926689 partner of Y14 and mago K14294 WIBG; partner of Y14 and mago
E 117904946 glycine-rich RNA-binding protein blt801 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 117907240 heterogeneous nuclear ribonucleoprotein 1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 117908997 heterogeneous nuclear ribonucleoprotein 1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 117909373 UBP1-associated protein 2C K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 117915830 UBP1-associated protein 2A-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 117916737 UBP1-associated protein 2A-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 117918893 UBP1-associated protein 2B-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 117920210 UBP1-associated protein 2A K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 117921115 UBP1-associated protein 2C-like isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 117922722 heterogeneous nuclear ribonucleoprotein 1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 117927365 heterogeneous nuclear ribonucleoprotein 1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 117905376 heterogeneous nuclear ribonucleoproteins A2/B1-like isoform X1 K14411 MSI; RNA-binding protein Musashi
E 117909214 heterogeneous nuclear ribonucleoprotein 1 K14411 MSI; RNA-binding protein Musashi
E 117914746 heterogeneous nuclear ribonucleoprotein 1 K14411 MSI; RNA-binding protein Musashi
E 117918024 RNA-binding protein Musashi homolog 1 K14411 MSI; RNA-binding protein Musashi
E 117918469 heterogeneous nuclear ribonucleoprotein 1-like K14411 MSI; RNA-binding protein Musashi
E 117924015 heterogeneous nuclear ribonucleoprotein 1-like K14411 MSI; RNA-binding protein Musashi
E 117926508 heterogeneous nuclear ribonucleoprotein 1 K14411 MSI; RNA-binding protein Musashi
E 117910757 LOW QUALITY PROTEIN: HBS1-like protein K14416 HBS1; elongation factor 1 alpha-like protein
E 117911124 HBS1-like protein isoform X1 K14416 HBS1; elongation factor 1 alpha-like protein
E 117913046 protein PELOTA 1 isoform X1 K06965 PELO; protein pelota
E 117920675 protein PELOTA 1-like K06965 PELO; protein pelota
E 117911387 polyadenylate-binding protein 3-like isoform X1 K14396 PABPN1; polyadenylate-binding protein 2
E 117918427 polyadenylate-binding protein 2 isoform X1 K14396 PABPN1; polyadenylate-binding protein 2
E 117933833 polyadenylate-binding protein 1 K14396 PABPN1; polyadenylate-binding protein 2
E 117920725 DEAD-box ATP-dependent RNA helicase 38 K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 117923771 pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1
E 117921306 uncharacterized protein LOC117921306 isoform X1 K18732 SARNP; SAP domain-containing ribonucleoprotein
E 117916409 transcription factor Pur-alpha 1 K21772 PURA; transcriptional activator protein Pur-alpha
E 117928746 SAC3 family protein A isoform X1 K23802 LENG8; SAC3 family protein LENG8/THP3
C Surveillance factors
D Surveillance complex
E 117905917 eukaryotic peptide chain release factor subunit 1-3-like K03265 ETF1; peptide chain release factor subunit 1
E 117906753 eukaryotic peptide chain release factor subunit 1-3-like K03265 ETF1; peptide chain release factor subunit 1
E 117907051 eukaryotic peptide chain release factor subunit 1-3 K03265 ETF1; peptide chain release factor subunit 1
E 117904700 eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X1 K03267 ERF3; peptide chain release factor subunit 3
E 117930411 regulator of nonsense transcripts 1 homolog K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 117927633 regulator of nonsense transcripts UPF2 K14327 UPF2; regulator of nonsense transcripts 2
E 117926773 regulator of nonsense transcripts UPF3 isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 117905190 serine/threonine-protein phosphatase PP2A catalytic subunit-like K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 117916412 serine/threonine-protein phosphatase PP2A catalytic subunit isoform X1 K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 117917164 LOW QUALITY PROTEIN: serine/threonine-protein phosphatase PP2A catalytic subunit-like K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 117928078 serine/threonine-protein phosphatase PP2A-2 catalytic subunit-like K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 117931164 serine/threonine-protein phosphatase PP2A catalytic subunit K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 117904339 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 117917886 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 117904229 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 117912848 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 117921503 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 117925271 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 117914737 probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 117918368 serine/threonine protein phosphatase 2A regulatory subunit B''beta-like isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 117929692 serine/threonine protein phosphatase 2A regulatory subunit B''beta-like K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 117911098 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform-like K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 117913087 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 117913198 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 117920170 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 117924552 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform-like K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 117927244 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 117928752 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform-like K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 117930815 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 117911104 LOW QUALITY PROTEIN: uncharacterized protein LOC117911104 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 117911223 LOW QUALITY PROTEIN: uncharacterized protein LOC117911223 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 117916044 protein SMG7 K14409 SMG7; protein SMG7
E 117920166 protein SMG7-like K14409 SMG7; protein SMG7
E 117916148 uncharacterized protein LOC117916148 K18734 SMG8; protein SMG8
E 117933841 protein SMG9-like isoform X1 K18735 SMG9; protein SMG9
E 117922773 uncharacterized protein LOC117922773 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 117929866 uncharacterized protein LOC117929866 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
C Factors involved in mRNA localization
D Cargo complex
E 117914838 pumilio homolog 24 isoform X1 K14844 PUF6; pumilio homology domain family member 6
E 117909191 myosin-2 K10357 MYO5; myosin V
E 117913070 myosin-15 K10357 MYO5; myosin V
E 117914233 myosin-6-like isoform X1 K10357 MYO5; myosin V
E 117917945 myosin-6-like K10357 MYO5; myosin V
E 117919391 myosin-9-like isoform X1 K10357 MYO5; myosin V
E 117921627 LOW QUALITY PROTEIN: myosin-17-like K10357 MYO5; myosin V
E 117924981 myosin-17-like isoform X1 K10357 MYO5; myosin V
E 117929598 myosin-9 K10357 MYO5; myosin V
E 117912514 egalitarian protein homolog K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
E 117921453 exosome component 10-like isoform X1 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
D Trans-acting binding proteins
E 117907539 far upstream element-binding protein 1 isoform X1 K13210 FUBP; far upstream element-binding protein
E 117912847 far upstream element-binding protein 2 K13210 FUBP; far upstream element-binding protein
E 117915697 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 117915980 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 117919866 elongation factor 1-alpha-like K03231 EEF1A; elongation factor 1-alpha
E 117928658 elongation factor 1-alpha-like K03231 EEF1A; elongation factor 1-alpha
E 117907066 elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma
E 117926571 elongation factor 1-gamma-like K03233 EEF1G; elongation factor 1-gamma
E 117926573 elongation factor 1-gamma-like K03233 EEF1G; elongation factor 1-gamma
E 117920300 probable ADP-ribosylation factor GTPase-activating protein AGD14 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
D Other mRNA localization factors
E 117913123 protein PIR K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 117907673 RNA-binding KH domain-containing protein RCF3-like K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 117911081 KH domain-containing protein HEN4-like K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 117911992 RNA-binding KH domain-containing protein PEPPER-like K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 117918109 RNA-binding KH domain-containing protein RCF3-like isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 117918729 flowering locus K homology domain-like isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 117922291 KH domain-containing protein HEN4 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 117923536 KH domain-containing protein At4g18375-like K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 117925251 RNA-binding KH domain-containing protein PEPPER K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 117930376 flowering locus K homology domain-like K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 117930387 KH domain-containing protein At4g18375 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 117930699 KH domain-containing protein At4g18375-like K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 117932475 poly(rC)-binding protein 4-like isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 117933783 RNA-binding KH domain-containing protein RCF3 K21444 PCBP3_4; poly(rC)-binding protein 3/4
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 117904375 protein argonaute 1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 117911161 protein argonaute 7-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 117911375 protein argonaute 7 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 117914642 protein argonaute 10-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 117916300 protein argonaute 5 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 117916330 protein argonaute 4-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 117920255 protein argonaute 4A-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 117920674 protein argonaute 5-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 117923788 protein argonaute 2-like isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 117923813 protein argonaute 2-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 117924317 protein argonaute 2-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 117925709 protein argonaute PNH1-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 117927391 protein argonaute 16 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 117929145 protein argonaute 4A-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 117914688 eukaryotic translation initiation factor K03259 EIF4E; translation initiation factor 4E
E 117920825 eukaryotic translation initiation factor NCBP K03259 EIF4E; translation initiation factor 4E
E 117924372 eukaryotic translation initiation factor 4E-1-like K03259 EIF4E; translation initiation factor 4E
E 117930411 regulator of nonsense transcripts 1 homolog K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 117916169 DEAD-box ATP-dependent RNA helicase 37-like K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 117920849 DEAD-box ATP-dependent RNA helicase 37-like K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 117924487 DEAD-box ATP-dependent RNA helicase 52C-like K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 117928701 DEAD-box ATP-dependent RNA helicase 37-like K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 117905208 DEAD-box ATP-dependent RNA helicase 8-like K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 117932754 DEAD-box ATP-dependent RNA helicase 8-like K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 117915550 protein decapping 5 K18749 LSM14; protein LSM14
E 117929105 protein decapping 5-like K18749 LSM14; protein LSM14
E 117914806 probable RNA helicase SDE3 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 117907382 transportin-1-like isoform X1 K18752 TNPO1; transportin-1
E 117911693 LOW QUALITY PROTEIN: transportin-1-like K18752 TNPO1; transportin-1
E 117911694 transportin-1-like isoform X1 K18752 TNPO1; transportin-1
E 117911104 LOW QUALITY PROTEIN: uncharacterized protein LOC117911104 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 117911223 LOW QUALITY PROTEIN: uncharacterized protein LOC117911223 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 117916044 protein SMG7 K14409 SMG7; protein SMG7
E 117920166 protein SMG7-like K14409 SMG7; protein SMG7
E 117917987 mRNA decay activator protein ZFP36-like K15308 TTP; tristetraprolin
E 117913020 zinc finger CCCH domain-containing protein 15 K18753 ZFP36L; butyrate response factor
E 117931040 zinc finger CCCH domain-containing protein 15-like K18753 ZFP36L; butyrate response factor
E 117904946 glycine-rich RNA-binding protein blt801 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 117907240 heterogeneous nuclear ribonucleoprotein 1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 117908997 heterogeneous nuclear ribonucleoprotein 1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 117909373 UBP1-associated protein 2C K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 117915830 UBP1-associated protein 2A-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 117916737 UBP1-associated protein 2A-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 117918893 UBP1-associated protein 2B-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 117920210 UBP1-associated protein 2A K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 117921115 UBP1-associated protein 2C-like isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 117922722 heterogeneous nuclear ribonucleoprotein 1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 117927365 heterogeneous nuclear ribonucleoprotein 1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 117906902 la-related protein 1C-like K18757 LARP1; la-related protein 1
E 117912578 la-related protein 1C isoform X1 K18757 LARP1; la-related protein 1
E 117915710 la-related protein 1A isoform X1 K18757 LARP1; la-related protein 1
E 117921234 la-related protein 1A-like isoform X1 K18757 LARP1; la-related protein 1
D P-body specific factors
E 117928979 mRNA-decapping enzyme subunit 2 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 117916115 mRNA-decapping enzyme-like protein K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 117920148 mRNA-decapping enzyme-like protein K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 117922006 sm-like protein LSM1B K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 117924870 sm-like protein LSM1B K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 117918468 sm-like protein LSM2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 117906796 sm-like protein LSM3B K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 117919326 probable U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 117931382 probable U6 snRNA-associated Sm-like protein LSm4 isoform X1 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 117915389 sm-like protein LSM5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 117914356 sm-like protein LSM36B K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 117927553 sm-like protein LSM7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 117933094 sm-like protein LSM8 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 117909191 myosin-2 K10357 MYO5; myosin V
E 117913070 myosin-15 K10357 MYO5; myosin V
E 117914233 myosin-6-like isoform X1 K10357 MYO5; myosin V
E 117917945 myosin-6-like K10357 MYO5; myosin V
E 117919391 myosin-9-like isoform X1 K10357 MYO5; myosin V
E 117921627 LOW QUALITY PROTEIN: myosin-17-like K10357 MYO5; myosin V
E 117924981 myosin-17-like isoform X1 K10357 MYO5; myosin V
E 117929598 myosin-9 K10357 MYO5; myosin V
E 117906510 tubulin alpha-4 chain K07374 TUBA; tubulin alpha
E 117911217 tubulin alpha chain K07374 TUBA; tubulin alpha
E 117916116 tubulin alpha-5 chain K07374 TUBA; tubulin alpha
E 117918474 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 117919720 tubulin alpha-5 chain-like K07374 TUBA; tubulin alpha
E 117931107 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 117932274 CCR4-NOT transcription complex subunit 1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 117933246 CCR4-NOT transcription complex subunit 1-like K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 117933248 CCR4-NOT transcription complex subunit 1-like K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 117916422 probable NOT transcription complex subunit VIP2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 117931651 probable NOT transcription complex subunit VIP2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 117920157 CCR4-NOT transcription complex subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 117915955 general negative regulator of transcription subunit 4-like isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 117906904 carbon catabolite repressor protein 4 homolog 4 isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 117907719 carbon catabolite repressor protein 4 homolog 1-like isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 117920327 carbon catabolite repressor protein 4 homolog 1-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 117912919 probable CCR4-associated factor 1 homolog 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 117915651 probable CCR4-associated factor 1 homolog 9 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 117916874 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 117916875 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 117921275 probable CCR4-associated factor 1 homolog 9 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 117922619 probable CCR4-associated factor 1 homolog 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 117922671 probable CCR4-associated factor 1 homolog 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 117925750 probable CCR4-associated factor 1 homolog 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 117907956 DIS3-like exonuclease 2 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 117908751 protein PAT1 homolog K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 117909047 protein PAT1 homolog 2-like K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 117908768 enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 117923938 enhancer of mRNA-decapping protein 4-like K12616 EDC4; enhancer of mRNA-decapping protein 4
E 117927633 regulator of nonsense transcripts UPF2 K14327 UPF2; regulator of nonsense transcripts 2
E 117926773 regulator of nonsense transcripts UPF3 isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 117915568 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 117908927 YTH domain-containing protein ECT1 isoform X1 K20102 YTHDF; YTH domain-containing family protein
E 117914561 YTH domain-containing protein ECT4-like isoform X1 K20102 YTHDF; YTH domain-containing family protein
E 117922700 YTH domain-containing protein ECT4 isoform X1 K20102 YTHDF; YTH domain-containing family protein
E 117925051 YTH domain-containing protein ECT4-like K20102 YTHDF; YTH domain-containing family protein
E 117925218 YTH domain-containing protein ECT4-like isoform X1 K20102 YTHDF; YTH domain-containing family protein
E 117926695 YTH domain-containing protein ECT1 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 117912555 oligouridylate-binding protein 1B-like K13201 TIA1; nucleolysin TIA-1/TIAR
E 117922127 oligouridylate-binding protein 1B-like isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 117925075 oligouridylate-binding protein 1-like isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 117906578 polyadenylate-binding protein 8-like isoform X1 K13126 PABPC; polyadenylate-binding protein
E 117907691 polyadenylate-binding protein 3-like K13126 PABPC; polyadenylate-binding protein
E 117911367 polyadenylate-binding protein 2-like K13126 PABPC; polyadenylate-binding protein
E 117918431 polyadenylate-binding protein 2-like K13126 PABPC; polyadenylate-binding protein
E 117919639 polyadenylate-binding protein 7 K13126 PABPC; polyadenylate-binding protein
E 117921597 polyadenylate-binding protein 4-like isoform X1 K13126 PABPC; polyadenylate-binding protein
E 117904379 nuclear transport factor 2 isoform X1 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 117918652 nuclear transport factor 2-like isoform X1 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 117922360 nuclear transport factor 2-like K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 117930691 nuclear transport factor 2-like isoform X1 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 117914850 eukaryotic translation initiation factor 2A K15026 EIF2A; translation initiation factor 2A
E 117912793 eukaryotic translation initiation factor 3 subunit B-like K03253 EIF3B; translation initiation factor 3 subunit B
E 117912977 eukaryotic translation initiation factor 3 subunit B-like K03253 EIF3B; translation initiation factor 3 subunit B
E 117912932 eukaryotic initiation factor 4A-11 K03257 EIF4A; translation initiation factor 4A
E 117918780 eukaryotic initiation factor 4A isoform X1 K03257 EIF4A; translation initiation factor 4A
E 117922103 eukaryotic initiation factor 4A-8-like K03257 EIF4A; translation initiation factor 4A
E 117924822 uncharacterized protein LOC117924822 K03257 EIF4A; translation initiation factor 4A
E 117916056 eukaryotic initiation factor 4A-3 K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 117911819 eukaryotic translation initiation factor 4B3-like K03258 EIF4B; translation initiation factor 4B
E 117911820 LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4B3-like K03258 EIF4B; translation initiation factor 4B
E 117914285 eukaryotic translation initiation factor 4B2-like K03258 EIF4B; translation initiation factor 4B
E 117912484 eukaryotic translation initiation factor-like K03260 EIF4G; translation initiation factor 4G
E 117924983 eukaryotic translation initiation factor K03260 EIF4G; translation initiation factor 4G
E 117932299 LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4G-like K03260 EIF4G; translation initiation factor 4G
E 117932300 LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4G-like K03260 EIF4G; translation initiation factor 4G
E 117904652 guanine nucleotide-binding protein subunit beta-like protein K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 117925464 tudor domain-containing protein 3 K18404 TDRD3; tudor domain-containing protein 3
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 117916115 mRNA-decapping enzyme-like protein K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 117920148 mRNA-decapping enzyme-like protein K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 117928979 mRNA-decapping enzyme subunit 2 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 117905208 DEAD-box ATP-dependent RNA helicase 8-like K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 117932754 DEAD-box ATP-dependent RNA helicase 8-like K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 117908768 enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 117923938 enhancer of mRNA-decapping protein 4-like K12616 EDC4; enhancer of mRNA-decapping protein 4
E 117908751 protein PAT1 homolog K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 117909047 protein PAT1 homolog 2-like K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 117922006 sm-like protein LSM1B K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 117924870 sm-like protein LSM1B K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 117918468 sm-like protein LSM2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 117906796 sm-like protein LSM3B K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 117919326 probable U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 117931382 probable U6 snRNA-associated Sm-like protein LSm4 isoform X1 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 117915389 sm-like protein LSM5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 117914356 sm-like protein LSM36B K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 117927553 sm-like protein LSM7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 117933094 sm-like protein LSM8 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 117906055 5'-3' exoribonuclease 3 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 117933631 5'-3' exoribonuclease 3-like isoform X1 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 117930125 5'-3' exoribonuclease 4 K20553 XRN4; 5'-3' exoribonuclease 4 [EC:3.1.13.-]
D Other 5'-3' decay factors
C 3'-5' decay
D Core exosome factors
E 117912191 exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
E 117918732 exosome complex component RRP4 homolog K03679 RRP4; exosome complex component RRP4
E 117904925 putative exosome complex component rrp40 isoform X1 K03681 RRP40; exosome complex component RRP40
E 117932218 exosome complex component RRP41 homolog K11600 RRP41; exosome complex component RRP41
E 117912923 exosome complex exonuclease RRP46 homolog K12590 RRP46; exosome complex component RRP46
E 117916643 exosome complex component RRP41-like K12587 MTR3; exosome complex component MTR3
E 117913127 exosome complex component RRP42 isoform X1 K12589 RRP42; exosome complex component RRP42
E 117921197 exosome complex component RRP43 K12586 RRP43; exosome complex component RRP43
E 117905633 exosome complex component RRP45A-like isoform X1 K03678 RRP45; exosome complex component RRP45
E 117907932 exosome complex component RRP45A-like isoform X1 K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 117918572 exosome complex exonuclease RRP44 homolog A K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 117920436 protein RRP6-like 2 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 117913176 nuclear nucleic acid-binding protein C1D K12592 C1D; exosome complex protein LRP1
E 117915742 uncharacterized protein LOC117915742 isoform X1 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
D TRAMP complex
E 117909170 terminal nucleotidyltransferase 4B isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 117916203 DExH-box ATP-dependent RNA helicase DExH9 isoform X1 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
E 117925207 DExH-box ATP-dependent RNA helicase DExH10 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 117916892 DExH-box ATP-dependent RNA helicase DExH11 K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 117907560 tetratricopeptide repeat protein SKI3 K12600 SKI3; superkiller protein 3
E 117925060 LOW QUALITY PROTEIN: WD repeat-containing protein VIP3 K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 117906904 carbon catabolite repressor protein 4 homolog 4 isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 117907719 carbon catabolite repressor protein 4 homolog 1-like isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 117920327 carbon catabolite repressor protein 4 homolog 1-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 117932274 CCR4-NOT transcription complex subunit 1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 117933246 CCR4-NOT transcription complex subunit 1-like K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 117933248 CCR4-NOT transcription complex subunit 1-like K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 117916422 probable NOT transcription complex subunit VIP2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 117931651 probable NOT transcription complex subunit VIP2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 117920157 CCR4-NOT transcription complex subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 117915955 general negative regulator of transcription subunit 4-like isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 117912919 probable CCR4-associated factor 1 homolog 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 117915651 probable CCR4-associated factor 1 homolog 9 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 117916874 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 117916875 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 117921275 probable CCR4-associated factor 1 homolog 9 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 117922619 probable CCR4-associated factor 1 homolog 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 117922671 probable CCR4-associated factor 1 homolog 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 117925750 probable CCR4-associated factor 1 homolog 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 117908866 CCR4-NOT transcription complex subunit 9 isoform X1 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 117925670 cell differentiation protein rcd1-like K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 117926048 CCR4-NOT transcription complex subunit 9-like K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 117925008 CCR4-NOT transcription complex subunit 10 isoform X1 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
E 117917453 ABC transporter I family member 19-like K12608 CAF16; CCR4-NOT complex subunit CAF16
E 117931261 ABC transporter I family member 20-like K12608 CAF16; CCR4-NOT complex subunit CAF16
E 117931262 ABC transporter I family member 20-like isoform X1 K12608 CAF16; CCR4-NOT complex subunit CAF16
D Pan complex
D Other 3'-5' decay factors
E 117909380 poly(A)-specific ribonuclease PARN K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 117917726 poly(A)-specific ribonuclease PARN-like K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 117905098 DExH-box ATP-dependent RNA helicase DExH3-like K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 117905328 DExH-box ATP-dependent RNA helicase DExH3 isoform X1 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 117909790 DExH-box ATP-dependent RNA helicase DExH1-like K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 117913578 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 117919918 LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH1 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 117927317 DExH-box ATP-dependent RNA helicase DExH6-like K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 117934376 LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH3-like K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 117916186 uncharacterized protein LOC117916186 isoform X1 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 117928225 uncharacterized protein LOC117928225 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 117928632 3'-5' exonuclease eri1-like K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 117929363 LOW QUALITY PROTEIN: ERI1 exoribonuclease 2-like K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 117904473 nuclear exosome regulator NRDE2 K26109 NRDE2; nuclear exosome regulator NRDE2
E 117930188 protein RST1 K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 117916950 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
E 117916162 probable ATP-dependent DNA helicase RecQ isoform X1 K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Other RNA degradosome components
E 117904423 enolase 1, chloroplastic K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 117916927 cytosolic enolase 3 isoform X1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 117920491 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 117933858 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 117921160 probable polyribonucleotide nucleotidyltransferase 1, chloroplastic isoform X1 K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 117931114 polyribonucleotide nucleotidyltransferase 2, mitochondrial isoform X1 K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 117912746 ATP-dependent 6-phosphofructokinase 6 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 117919188 ATP-dependent 6-phosphofructokinase 5, chloroplastic K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 117923756 ATP-dependent 6-phosphofructokinase 2 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 117925246 ATP-dependent 6-phosphofructokinase 3-like K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 117929702 ATP-dependent 6-phosphofructokinase 5, chloroplastic-like K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 117933546 ATP-dependent 6-phosphofructokinase 4, chloroplastic isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 117911242 heat shock 70 kDa protein, mitochondrial K04043 dnaK; molecular chaperone DnaK
E 117918633 heat shock 70 kDa protein, mitochondrial-like K04043 dnaK; molecular chaperone DnaK
E 117914853 chaperonin CPN60-2, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 117916344 ruBisCO large subunit-binding protein subunit alpha K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 117916384 ruBisCO large subunit-binding protein subunit beta, chloroplastic K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 117918155 chaperonin 60 subunit beta 4, chloroplastic-like isoform X1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 117921510 chaperonin 60 subunit alpha 2, chloroplastic K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 117922415 chaperonin CPN60-like 2, mitochondrial isoform X1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 117922560 LOW QUALITY PROTEIN: ruBisCO large subunit-binding protein subunit beta, chloroplastic-like K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 117925710 chaperonin 60 subunit beta 4, chloroplastic-like K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 117918732 exosome complex component RRP4 homolog K03679 RRP4; exosome complex component RRP4
E 117912191 exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 117932218 exosome complex component RRP41 homolog K11600 RRP41; exosome complex component RRP41
E 117913127 exosome complex component RRP42 isoform X1 K12589 RRP42; exosome complex component RRP42
D Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 27, 2025