+E Transcription factors KO #

  Transcription Factors - Vibrio scophthalmi

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AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D VSVS12_03400 HTH-type transcriptional activator RhaS K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D VSVS12_04111 Melibiose operon regulatory protein K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein D VSVS12_02266 hypothetical protein K19693 tfoS; AraC family transcriptional regulator, chitin signaling transcriptional activator D VSVS12_03379 Transposon Tn10 TetD protein K13652 K13652; AraC family transcriptional regulator D VSVS12_01495 Regulatory protein K13652 K13652; AraC family transcriptional regulator D VSVS12_03073 DNA-3-methyladenine glycosylase II K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D VSVS12_03429 HTH-type transcriptional regulator ArgR K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA C LysR family D VSVS12_02525 HTH-type transcriptional activator AmpR K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D VSVS12_02344 Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D VSVS12_01988 HTH-type transcriptional regulator CzcR K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D VSVS12_04560 Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D VSVS12_00114 putative HTH-type transcriptional regulator in ibpB-leuC intergenic region K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D VSVS12_01544 HTH-type transcriptional regulator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D VSVS12_00756 Transcriptional activator protein NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D VSVS12_00432 Hydrogen peroxide-inducible protein activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D VSVS12_02495 HTH-type transcriptional regulator EstR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D VSVS12_02837 HTH-type transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D VSVS12_02672 HTH-type transcriptional regulator LeuO K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon D VSVS12_02228 putative HTH-type transcriptional regulator YraN K10918 aphB; LysR family transcriptional regulator, transcriptional activator AphB D VSVS12_01202 HTH-type transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D VSVS12_01291 HTH-type transcriptional regulator DsdC K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator D VSVS12_03075 HTH-type transcriptional regulator HdfR K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family D VSVS12_03637 L-fucose operon activator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D VSVS12_01149 Putative aga operon transcriptional repressor K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor D VSVS12_01274 putative HTH-type transcriptional regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor D VSVS12_01278 Putative aga operon transcriptional repressor K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor D VSVS12_04551 Glycerol-3-phosphate regulon repressor K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor D VSVS12_04578 Glycerol-3-phosphate regulon repressor K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor D VSVS12_03166 HTH-type transcriptional regulator UlaR K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor C LacI family D VSVS12_04182 HTH-type transcriptional regulator GalS K02529 galR; LacI family transcriptional regulator, galactose operon repressor D VSVS12_03511 putative HTH-type transcriptional repressor ExuR K02529 galR; LacI family transcriptional regulator, galactose operon repressor D VSVS12_00373 Sucrose operon repressor K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D VSVS12_03860 Catabolite repressor/activator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D VSVS12_04098 Sucrose operon repressor K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor D VSVS12_02187 Sucrose operon repressor K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor D VSVS12_00136 HTH-type transcriptional regulator IdnR K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor C GntR family D VSVS12_01587 Arabinose metabolism transcriptional repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D VSVS12_03327 putative HTH-type transcriptional regulator YidP K11922 mngR; GntR family transcriptional regulator, mannosyl-D-glycerate transport/metabolism system repressor D VSVS12_01344 Fatty acid metabolism regulator protein K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D VSVS12_00666 Pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D VSVS12_04240 putative HTH-type transcriptional regulator YisV K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family D VSVS12_00109 putative HTH-type transcriptional regulator K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor D VSVS12_00326 Nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator D VSVS12_00670 HTH-type transcriptional regulator LuxR K10913 hapR; TetR/AcrR family transcriptional regulator, hemagglutinin/protease regulatory protein D VSVS12_01325 hypothetical protein K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness D VSVS12_04285 putative HTH-type transcriptional regulator YhgD K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness D VSVS12_03016 HTH-type transcriptional repressor FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator C Lrp/AsnC family D VSVS12_00153 putative HTH-type transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D VSVS12_01340 Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D VSVS12_03024 Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D VSVS12_04160 HTH-type transcriptional regulator Ptr1 K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D VSVS12_04297 Transcriptional regulatory protein DoeX K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D VSVS12_01931 Transcriptional regulatory protein DoeX K15782 doeX; Lrp/AsnC family transcriptional regulator, regulator of ectoine-degradation genes D VSVS12_01299 HTH-type transcriptional regulator LrpA K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D VSVS12_04279 putative transcriptional regulatory protein YhcZ K20918 vpsT; LuxR family transcriptional regulator, positive regulator of biofilm formation D VSVS12_03729 HTH-type transcriptional regulator MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein D VSVS12_03089 HTH-type transcriptional regulator MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein C MarR family D VSVS12_02613 Transcriptional regulator SlyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin C MerR family D VSVS12_03976 HTH-type transcriptional regulator CueR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D VSVS12_02986 HTH-type transcriptional regulator ZntR K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA D VSVS12_03444 HTH-type transcriptional activator SoxR like protein K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR D VSVS12_04362 HTH-type transcriptional repressor BluR K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator C Fur family D VSVS12_02380 Ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D VSVS12_00511 Zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D VSVS12_01157 Pectin degradation repressor protein KdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor C CRP/FNR family D VSVS12_00453 cAMP-activated global transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D VSVS12_01690 Fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D VSVS12_00806 HTH-type transcriptional regulator CymR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor C ArsR family D VSVS12_00028 Arsenical resistance operon repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D VSVS12_00757 Transcriptional activator HlyU K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator C XRE family C PadR family D VSVS12_00423 Negative transcription regulator PadR K10917 aphA; PadR family transcriptional regulator, regulatory protein AphA C Other families D VSVS12_01764 HTH-type transcriptional regulator MurR K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor D VSVS12_01549 HTH-type transcriptional regulator HexR K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D VSVS12_03332 hypothetical protein K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D VSVS12_00359 birA; Biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D VSVS12_04451 hypothetical protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D VSVS12_02984 DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D VSVS12_00778 Trp operon repressor like protein K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D VSVS12_03254 Sugar fermentation stimulation protein K07724 ner; Ner family transcriptional regulator D VSVS12_03910 HTH-type transcriptional regulator SgrR K11925 sgrR; SgrR family transcriptional regulator D VSVS12_02308 Anaerobic nitric oxide reductase transcription regulator NorR K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D VSVS12_02596 Nitrogen assimilation regulatory protein NtrC K20919 vpsR; sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation D VSVS12_01347 Regulatory protein LuxO K12266 norR; anaerobic nitric oxide reductase transcription regulator D VSVS12_04261 Regulatory protein LuxO K12266 norR; anaerobic nitric oxide reductase transcription regulator D VSVS12_03460 Anaerobic nitric oxide reductase transcription regulator NorR K12266 norR; anaerobic nitric oxide reductase transcription regulator D VSVS12_00691 Carbohydrate diacid regulator K02647 cdaR; carbohydrate diacid regulator D VSVS12_03704 hypothetical protein K07727 K07727; putative transcriptional regulator D VSVS12_03370 putative HTH-type transcriptional regulator YozG K07727 K07727; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D VSVS12_00369 Met repressor K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D VSVS12_03028 putA; Proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D VSVS12_03393 hypothetical protein K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator D VSVS12_03402 hypothetical protein K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator D VSVS12_00827 Protein BolA like protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D VSVS12_04470 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D VSVS12_04533 Plasmid Partition par B protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D VSVS12_04564 Plasmid Partition par B protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D VSVS12_00194 putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D VSVS12_03191 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D VSVS12_00375 Transcription antitermination protein K05785 rfaH; transcriptional antiterminator RfaH D VSVS12_00629 Arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D VSVS12_02384 N-acetylglucosamine repressor K02565 nagC; N-acetylglucosamine repressor D VSVS12_01259 Protein mlc K15545 mlc; transcriptional regulator of PTS gene D VSVS12_01892 Transcriptional regulatory protein TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D VSVS12_01043 Glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor D VSVS12_02049 Anaerobic nitric oxide reductase transcription regulator NorR K03974 pspF; psp operon transcriptional activator D VSVS12_02046 Phage shock protein K03973 pspC; phage shock protein C D VSVS12_02809 uncharacterized protein K07733 alpA; prophage regulatory protein D VSVS12_04202 uncharacterized protein K07733 alpA; prophage regulatory protein D VSVS12_02852 UPF0301 protein K07735 algH; putative transcriptional regulator D VSVS12_00683 RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor D VSVS12_00852 Transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR D VSVS12_00849 Sigma factor-binding protein Crl K11926 crl; sigma factor-binding protein Crl ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 29, 2024 #
Classification taken and modified from TRANSFAC 7.0