+E Transcription factors KO #

  Transcription Factors - Vibrio atlanticus

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AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D VS_1649 hgiDIIM; Cytosine-specific methyltransferase HgiDII; restriction system K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D VS_II1368 putative transcriptional regulator, AraC family K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D VS_II1420 Transcriptional Regulator, AraC family K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE D VS_2236 putative transcriptional regulator, AraC/XylS family K19693 tfoS; AraC family transcriptional regulator, chitin signaling transcriptional activator D VS_II1402 AraC-type DNA-binding domain-containing proteins (transcriptional regulator) K13652 K13652; AraC family transcriptional regulator D VS_II1290 putative AraC-family regulatory protein K13652 K13652; AraC family transcriptional regulator D VS_II1035 Hypothetical protein K13652 K13652; AraC family transcriptional regulator D VS_II0500 Transcription activator K13653 K13653; AraC family transcriptional regulator D VS_II0018 AraC-type DNA-binding domain-containing protein K07506 K07506; AraC family transcriptional regulator D VS_II1431 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] C LysR family D VS_1151 Transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D VS_2399 Glycine cleavage system transcriptional activator (Gcv operonactivator) K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D VS_II0426 Glycine cleavage system transcriptional activator (Gcv operon activator) K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D VS_II1115 Transcriptional regulators, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D VS_0060 HTH-type transcriptional activator ilvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D VS_1144 HTH-type transcriptional regulator metR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D VS_0531 Transcriptional activator protein nhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D VS_2879 Transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D VS_0594 Transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D VS_2642 Chromosome initiation inhibitor (OriC replication inhibitor) K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D VS_0386 Transcriptional regulator, LysR family K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon D VS_0909 transcriptional regulator, LysR family K10918 aphB; LysR family transcriptional regulator, transcriptional activator AphB D VS_2050 HTH-type transcriptional regulator cysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D VS_2185 transcriptional regulator K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator D VS_II1433 Transcriptional regulator, LysR family K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family D VS_II0114 Transcriptional regulator, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D VS_0174 putative HTH-type transcriptional regulator deoR K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor C LacI family D VS_II0945 Ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D VS_II1383 Transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D VS_II1392 Transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D VS_2899 HTH-type transcriptional repressor cytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D VS_II1031 Transcriptional regulator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D VS_2379 HTH-type transcriptional regulator treR K03485 treR; LacI family transcriptional regulator, trehalose operon repressor D VS_II0098 LacI-family transcriptional regulator K03487 ascG; LacI family transcriptional regulator, asc operon repressor D VS_1088 HTH-type transcriptional repressor purR K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor D VS_II0411 HTH-type transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor C GntR family D VS_1220 Transcriptional regulator K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D VS_II0604 Transcriptional regulator of succinylCoA synthetase operon K11922 mngR; GntR family transcriptional regulator, mannosyl-D-glycerate transport/metabolism system repressor D VS_1007 Fatty acid metabolism regulator protein K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D VS_2543 Pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D VS_II0337 Transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D VS_0391 Transcriptional regulator K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator C TetR/AcrR family D VS_II0056 putative transcriptional regulator K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D VS_0065 Transcriptional regulator K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor D VS_0180 HTH-type protein slmA K05501 slmA; TetR/AcrR family transcriptional regulator D VS_2539 HTH-type transcriptional regulator luxR K10913 hapR; TetR/AcrR family transcriptional regulator, hemagglutinin/protease regulatory protein D VS_2088 transcriptional regulator tetR family K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness D VS_II0557 Transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D VS_II1315 Transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D VS_2105 hypothetical transcriptional regulator, TetR family K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D VS_3002 transcriptional regulator, TetR family K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator C Lrp/AsnC family D VS_0085 transcriptional regulator AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D VS_2047 Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D VS_II0024 Transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D VS_II1057 putative transcription regulator protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D VS_1744 Bkd operon transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D VS_II0580 putative transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D VS_II0171 Transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D VS_II0049 Hypothetical transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D VS_II0339 putative transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D VS_2168 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D VS_0322 transcriptional regulator K04333 csgD; LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein D VS_II0631 transcriptional regulator, LuxR family K20918 vpsT; LuxR family transcriptional regulator, positive regulator of biofilm formation D VS_II0183 HTH-type transcriptional regulator malT (ATP-dependent transcriptional activator malT) K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein C MarR family D VS_II1310 putative transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D VS_2283 HTH-type transcriptional regulator cueR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D VS_2950 transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA D VS_2133 Redox-sensitive transcriptional activator soxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR C Fur family D VS_2258 Ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D VS_0290 putative zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D VS_II0137 putative transcriptional regulator K21602 yiaJ; IclR family transcriptional regulator, carbohydrate utilization repressor C CRP/FNR family D VS_2855 cAMP-binding proteins K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D VS_1467 fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D VS_0606 Predicted transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D VS_0945 hypothetical protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D VS_3034 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D VS_II0120 putative regulatory protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D VS_0532 Transcriptional activator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator C XRE family C PadR family D VS_2891 Transcriptional regulator K10917 aphA; PadR family transcriptional regulator, regulatory protein AphA C Other families D VS_1834 Transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D VS_2979 BirA bifunctional protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D VS_2948 putative factor-for-inversion stimulation protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D VS_0553 Trp operon repressor homolog K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D VS_II0768 putative ABC transporter periplasmic solute binding protein K11925 sgrR; SgrR family transcriptional regulator D VS_II0629 ABC type uncharacterized transport system K11925 sgrR; SgrR family transcriptional regulator D VS_II1362 Probable ABC-type uncharacterized transport system, periplasmic component K11925 sgrR; SgrR family transcriptional regulator D VS_2595 hypothetical protein K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D VS_0819 Polar flagellar protein FlaK K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D VS_0518 Sigma-54 dependent transcriptional regulator K20919 vpsR; sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation D VS_II1336 Sigma-54 dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D VS_II1007 vasH; Sigma 54 dependant transcriptional regulator K11914 sfa2; sigma-54 dependent transcriptional regulator D VS_II0563 Anaerobic nitric oxide reductase transcription regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator D VS_II0382 hypothetical protein K07726 K07726; putative transcriptional regulator D VS_II1340 putative transcriptional regulator K07727 K07727; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D VS_2895 Methionine Repressor metJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D VS_II0019 Proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D VS_0692 Cell division protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D VS_3160 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D VS_II0002 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D VS_2265 Transcription antiterminator K05785 rfaH; transcriptional antiterminator RfaH D VS_0357 Arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D VS_2929 hypothetical arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D VS_2262 N-acetylglucosamine repressor K02565 nagC; N-acetylglucosamine repressor D VS_1038 Transcriptional regulator K15545 mlc; transcriptional regulator of PTS gene D VS_II1086 putative transcriptional activator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D VS_1793 Transcriptional regulatory protein tyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D VS_2306 Glycine cleavage system transcriptional K03567 gcvR; glycine cleavage system transcriptional repressor D VS_1992 Psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator D VS_1989 Phage shock protein C K03973 pspC; phage shock protein C D VS_1654 putative prophage protein; putative DNA-binding protein K07733 alpA; prophage regulatory protein D VS_1668 Predicted transcriptional regulator K07733 alpA; prophage regulatory protein D VS_2679 hypothetical protein K07735 algH; putative transcriptional regulator D VS_2528 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D VS_2414 Hypothetical protein K07738 nrdR; transcriptional repressor NrdR D VS_2417 Transcriptional regulator K11926 crl; sigma factor-binding protein Crl ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0