+F Repair protein KO #

  DNA Repair and Recombination Proteins - Vibrio vulnificus YJ016

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D VVA0037 methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D VVA0357 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E VV0655 uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E VV2884 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E VV1186 EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D VV0622 NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D VV1754 NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D VV1786 NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D VVA1421 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D VVA0037 methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D VVA0357 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D VVA1424 deoxyribodipyrimidine photolyase-related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E VV0655 uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E VV2881 putative DNA glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E VVA0035 adenosine deaminase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E VV2884 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E VV1398 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E VV0289 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E VV1186 EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E VV2334 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E VV0654 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E VV0667 single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E VV0982 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E VV0186 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E VV2956 excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A E VV1193 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E VV1234 nuclease subunit of the excinuclease complex K03703 uvrC; excinuclease ABC subunit C E VV3191 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E VV0186 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E VV0982 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F VV3159 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F VV3158 DNA-directed RNA polymerase, beta subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F VV0399 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F VV0242 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F VV2365 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E VV2806 mismatch repair ATPase K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E VV3073 DNA mismatch repair enzyme K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E VV0674 DNA mismatch repair protein K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E VV1472 exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E VV0774 exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E VV0870 exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E VV2541 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E VV0012 DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E VV2908 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E VV0909 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E VV1281 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E VV3132 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E VVA1495 DNA polymerase III, alpha subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E VV2101 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E VV2529 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E VVA1405 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E VV2411 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E VV2687 DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] D DNA ligase E VV0982 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E VV3191 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E VV2953 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E VV2986 site-specific DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E VV2614 ATP-dependent exoDNAse beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E VV2615 exonuclease V gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E VV2613 ATP-dependent exoDNAse alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E VV2805 RecA recombinase K03553 recA; recombination protein RecA E VV2285 holliday junction resolvasome, DNA-binding subunit K03550 ruvA; holliday junction DNA helicase RuvA E VV2284 holliday junction resolvasome, helicase subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E VV2287 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E VV3012 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E VV2983 primosomal replication protein N K02686 priB; primosomal replication protein N E VV2331 primosomal replication protein N'' K04067 priC; primosomal replication protein N'' E VV1472 exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E VVA0587 putative exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E VVA0586 DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E VV2805 RecA recombinase K03553 recA; recombination protein RecA E VV2672 predicted ATP-dependent serine protease K04485 radA; DNA repair protein RadA/Sms E VV0013 Recombinational DNA repair ATPase K03629 recF; DNA replication and repair protein RecF E VV0239 RecG-like helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E VV0667 single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E VV2829 Recombinational DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O) E VV2409 Recombinational DNA repair protein K06187 recR; recombination protein RecR E VV0822 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E VV0722 DNA recombination-dependent growth factor C K03554 rdgC; recombination associated protein RdgC E VV2285 holliday junction resolvasome, DNA-binding subunit K03550 ruvA; holliday junction DNA helicase RuvA E VV2284 holliday junction resolvasome, helicase subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E VV2287 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E VVA1544 hypothetical protein K15342 cas1; CRISP-associated protein Cas1 E VV1425 DNA or RNA helicase K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E VVA0587 putative exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E VVA0586 DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F VV1247 DNA gyrase, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F VV0014 DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F VV2314 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F VV3145 bacterial nucleoid DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha F VV1107 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F VV0667 single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F VV2829 Recombinational DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O) F VV2409 Recombinational DNA repair protein K06187 recR; recombination protein RecR F VV0982 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F VV3139 factor-for-inversion stimulation protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F VV1966 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha F VV1301 bacterial nucleoid DNA-binding protein K05788 ihfB; integration host factor subunit beta E Supressor F VV1472 exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F VV3187 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F VV2580 DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F VV2956 excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A F VV1193 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F VV1346 DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D VV2581 DNA-damage-inducible protein P K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D VV2805 RecA recombinase K03553 recA; recombination protein RecA D VV0123 SOS-response transcriptional repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D VV0822 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D VV1232 DNA polymerase elongation subunit K02336 polB; DNA polymerase II [EC:2.7.7.7] D VV1296 conserved hypothetical protein K14160 imuA; protein ImuA D VV1295 uncharacterized protein conserved in bacteria K14161 imuB; protein ImuB D VV1294 DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D VV2953 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D VV2804 conserved hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D VV0040 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D VVA0629 DNA and RNA helicase K03658 helD; DNA helicase IV [EC:5.6.2.4] D VV2329 ATP-dependent helicase, DinG family K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D VV1048 Rad3-related DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D VV0622 NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D VV1754 NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D VV1786 NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D VVA1421 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D VV1244 ribonucleotide reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D VV1243 ribonucleotide reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024