+F Repair protein KO #

  DNA Repair and Recombination Proteins - Wolbachia endosymbiont strain TRS of Brugia malayi

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E Wbm0254 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E Wbm0365 Predicted EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D Wbm0355 dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E Wbm0115 Uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E Wbm0254 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E Wbm0589 Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E Wbm0365 Predicted EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E Wbm0729 Exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E Wbm0124 Single-stranded DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E Wbm0548 NAD-dependent DNA ligase, Lig K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E Wbm0263 Excinuclease ATPase subunit, UvrA K03701 uvrA; excinuclease ABC subunit A E Wbm0773 Helicase subunit of the DNA excision repair complex, UvrB K03702 uvrB; excinuclease ABC subunit B E Wbm0372 Nuclease subunit of the excinuclease complex, UvrC K03703 uvrC; excinuclease ABC subunit C E Wbm0628 Superfamily I DNA and RNA helicase, UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Wbm0548 NAD-dependent DNA ligase, Lig K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F Wbm0647 DNA-directed RNA polymerase, fusion of beta and beta' subunits. RpoB/RpoC K13797 rpoBC; DNA-directed RNA polymerase subunit beta-beta' [EC:2.7.7.6] F Wbm0318 DNA-directed RNA polymerase alpha subunit/40 kD subunit, RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F Wbm0387 DNA-directed RNA polymerase subunit omega, RpoZ K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors E Wbm0257 Mismatch repair ATPase, MutS family K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E Wbm0396 DNA mismatch repair enzyme MutL, predicted ATPase K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme E Wbm0499 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E Wbm0429 DNA polymerase III beta clamp subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E Wbm0176 DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E Wbm0639 ATPase involved in DNA replication, HolB K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E Wbm0543 DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E Wbm0434 DNA polymerase III, gamma/tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E Wbm0548 NAD-dependent DNA ligase, Lig K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E Wbm0628 Superfamily I DNA and RNA helicase, UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Wbm0211 Single-stranded DNA-binding protein, ssb K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E Wbm0427 RecA recombinase K03553 recA; recombination protein RecA E Wbm0251 Holliday junction resolvasome, DNA-binding subunit, RuvA K03550 ruvA; holliday junction DNA helicase RuvA E Wbm0252 Holliday junction resolvasome, helicase subunit, RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E Wbm0697 Holliday junction resolvasome, endonuclease subunit, RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E Wbm0745 Primosomal protein N', superfamily II helicase, PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E Wbm0427 RecA recombinase K03553 recA; recombination protein RecA E Wbm0126 Recombinational DNA repair ATPase, RecF K03629 recF; DNA replication and repair protein RecF E Wbm0635 RecG-like helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E Wbm0124 Single-stranded DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Wbm0288 Recombinational DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E Wbm0746 Recombinational DNA repair protein RecR K06187 recR; recombination protein RecR E Wbm0251 Holliday junction resolvasome, DNA-binding subunit, RuvA K03550 ruvA; holliday junction DNA helicase RuvA E Wbm0252 Holliday junction resolvasome, helicase subunit, RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E Wbm0697 Holliday junction resolvasome, endonuclease subunit, RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E Wbm0172 ATP-dependent exoDNAse (exonuclease V) beta subunit, RecB K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E Wbm0272 RecB exonuclease K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F Wbm0405 DNA gyrase, topoisomerase II A subunit, GyrA K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F Wbm0764 DNA gyrase, topoisomerase II, B subunit, GyrB K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F Wbm0037 Topoisomerase IA, TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F Wbm0572 Bacterial nucleoid DNA-binding protein, HupA family K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F Wbm0124 Single-stranded DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F Wbm0288 Recombinational DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F Wbm0746 Recombinational DNA repair protein RecR K06187 recR; recombination protein RecR F Wbm0548 NAD-dependent DNA ligase, Lig K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F Wbm0661 Bacterial nucleoid DNA-binding protein, HupA family K04764 ihfA; integration host factor subunit alpha F Wbm0058 Bacterial nucleoid DNA-binding protein, HupA family K05788 ihfB; integration host factor subunit beta E Supressor F Wbm0263 Excinuclease ATPase subunit, UvrA K03701 uvrA; excinuclease ABC subunit A F Wbm0773 Helicase subunit of the DNA excision repair complex, UvrB K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors D Wbm0427 RecA recombinase K03553 recA; recombination protein RecA D Wbm0211 Single-stranded DNA-binding protein, ssb K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D Wbm0355 dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Wbm0695 Ribonucleotide reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Wbm0267 Ribonucleotide reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024