+E Ribosome biogenesis KO
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Ribosome Biogenesis - Wenzhouxiangella marina
%
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D WM2015_2073 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
D WM2015_2872 Kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D WM2015_1540 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C WM2015_2072 GTPase Era K03595 era; GTPase
C WM2015_1994 GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C WM2015_1105 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor
C WM2015_2440 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
C WM2015_2234 N utilization substance protein B-like protein K03625 nusB; transcription antitermination protein NusB
C WM2015_2308 Transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D WM2015_2584 16S rRNA methyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D WM2015_318 Ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D WM2015_1635 Ribosomal RNA small subunit methyltransferase D K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D WM2015_555 16S rRNA methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D WM2015_130 16S rRNA methyltransferase B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D WM2015_2372 16S rRNA methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D WM2015_2228 Ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
C 23S rRNA modification factors
D WM2015_1658 23S rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D WM2015_1745 23S rRNA methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D WM2015_587 50S rRNA methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D WM2015_339 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D WM2015_204 Ribosomal RNA large subunit methyltransferase J K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D WM2015_327 Ribosomal RNA large subunit methyltransferase K/L K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D WM2015_1550 Dual-specificity RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D WM2015_1351 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D WM2015_1656 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D WM2015_1829 23S rRNA pseudouridylate synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D WM2015_406 Pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D WM2015_120 ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
B ribosomal protein modification factors
C WM2015_448 Alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C WM2015_1807 putative alpha-L-glutamate ligase K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C WM2015_1629 16S rRNA-processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C WM2015_1382 Ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C WM2015_2690 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C WM2015_554 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C WM2015_2222 50S ribosomal protein L3 glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C WM2015_1532 hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C WM2015_2073 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C WM2015_1830 Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
C WM2015_589 Ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C WM2015_370 Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C WM2015_1247 ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C WM2015_2072 GTPase Era K03595 era; GTPase
C WM2015_1539 Putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C WM2015_751 Putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C WM2015_1556 GTPase Der K03977 engA; GTPase
C WM2015_1994 GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-]
C WM2015_1318 GTPase HflX K03665 hflX; GTPase
B Other maturation factors
C WM2015_324 Translation factor, SUA5 type K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C WM2015_257 (p)ppGpp synthetase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C WM2015_2438 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C WM2015_2441 ribosome maturation protein RimP K09748 rimP; ribosome maturation factor RimP
C WM2015_586 Ribosomal silencing factor RsfS K09710 ybeB; ribosome-associated protein
C WM2015_1475 rRNA maturation factor K07042 ybeY; probable rRNA maturation factor
C WM2015_1746 RNA-binding protein containing KH domain K07574 yhbY; RNA-binding protein
C WM2015_928 hypothetical protein K09889 yjgA; ribosome-associated protein
C WM2015_2434 ribosome hibernation promoting factor HPF K05808 hpf; ribosome hibernation promoting factor
C WM2015_2311 Ribosome-binding ATPase YchF K06942 ychF; ribosome-binding ATPase
C WM2015_1566 hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 9, 2024