+D GENES KO
#
KEGG Orthology (KO) - Xenorhabdus bovienii SS-2004
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:xbo00010]
D XBJ1_4002 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D XBJ1_4302 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D XBJ1_0346 fbp; fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D XBJ1_3083 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D XBJ1_4297 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D XBJ1_2452 gapA; glyceraldehyde-3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D XBJ1_3082 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D XBJ1_1038 gpmA; phosphoglyceromutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D XBJ1_3521 ytjC; putative phosphoglyceromutase 2 K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D XBJ1_3651 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D XBJ1_2503 pykF; pyruvate kinase I (formerly F), fructose-stimulated K00873 PK; pyruvate kinase [EC:2.7.1.40]
D XBJ1_2231 pykA; pyruvate kinase II, glucose-stimulated K00873 PK; pyruvate kinase [EC:2.7.1.40]
D XBJ1_2510 pps; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D XBJ1_3455 aceE; pyruvate dehydrogenase, decarboxylase subunit, thiamin-binding K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D XBJ1_3454 aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase subunit K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D XBJ1_3453 lpd; dihydrolipoamide dehydrogenase, FAD/NAD(P)-binding, component of the 2-oxoglutarate dehydrogenase and the pyruvate dehydrogenase complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D XBJ1_3896 adhC; alcohol dehydrogenase class III K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D XBJ1_2430 adhE; multifunctional: acetaldehyde-CoA dehydrogenase (N-terminal); iron-dependent alcohol dehydrogenase (C-terminal); pyruvate-formate lyase deactivase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D XBJ1_0925 yiaY; putative alcohol dehydrogenase with dehydroquinate synthase-like domain K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D XBJ1_3649 aldB; aldehyde dehydrogenase B (lactaldehyde dehydrogenase) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D XBJ1_0050 acs; acetyl-CoA synthetase, has propionyl-CoA synthetase activity K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D XBJ1_0225 yihX; putative enzyme with a phosphatase-like domain K20866 yihX; glucose-1-phosphatase [EC:3.1.3.10]
D XBJ1_1074 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D XBJ1_2453 conserved hypothetical protein K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
D XBJ1_0071 pck; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D XBJ1_3726 chbF; phospho-beta-glucosidase, NAD(P)-binding (cellobiose-6-phosphate hydrolase) K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D XBJ1_3127 crr; PTS family enzyme IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
C 00020 Citrate cycle (TCA cycle) [PATH:xbo00020]
D XBJ1_1062 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D XBJ1_2292 acnA; aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D XBJ1_3452 acnB; bifunctional: aconitate hydratase 2; 2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D XBJ1_2828 icd; e14 prophage; isocitrate dehydrogenase, specific for NADP+ K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D XBJ1_1057 sucA; 2-oxoglutarate decarboxylase, component of the 2-oxoglutarate dehydrogenase complex, thiamin-binding K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D XBJ1_1056 sucB; dihydrolipoyltranssuccinate transferase, component of the 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D XBJ1_3453 lpd; dihydrolipoamide dehydrogenase, FAD/NAD(P)-binding, component of the 2-oxoglutarate dehydrogenase and the pyruvate dehydrogenase complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D XBJ1_1054 sucD; succinyl-CoA synthetase, alpha subunit, NAD(P)-binding K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D XBJ1_1055 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D XBJ1_1059 sdhA; succinate dehydrogenase, catalytic and NAD/flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D XBJ1_1058 sdhB; succinate dehydrogenase, Fe-S protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D XBJ1_1061 sdhC; succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with SdhD K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D XBJ1_1060 sdhD; succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with SdhC K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D XBJ1_0537 frdA; fumarate reductase, anaerobic, catalytic and NAD/flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D XBJ1_0536 frdB; fumarate reductase, anaerobic, Fe-S subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D XBJ1_0535 frdC; fumarate reductase, anaerobic, membrane anchor polypeptide K00246 frdC; succinate dehydrogenase subunit C
D XBJ1_0534 frdD; fumarate reductase, anaerobic, membrane anchor polypeptide K00247 frdD; succinate dehydrogenase subunit D
D XBJ1_2316 fumC; fumarase C (fumarate hydratase Class II) K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D XBJ1_0349 mdh; malate dehydrogenase, NAD(P)-binding K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D XBJ1_0071 pck; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D XBJ1_3455 aceE; pyruvate dehydrogenase, decarboxylase subunit, thiamin-binding K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D XBJ1_3454 aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase subunit K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:xbo00030]
D XBJ1_4002 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D XBJ1_2233 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D XBJ1_1028 ybhE; putative isomerase K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31]
D XBJ1_0927 gnd; gluconate-6-phosphate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D XBJ1_0054 rpe; D-ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D XBJ1_3080 tktA; transketolase 1 thiamin-binding, isozyme K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D XBJ1_3511 talB; transaldolase B K00616 TALDO1; transaldolase [EC:2.2.1.2]
D XBJ1_3445 rpiA; ribosephosphate isomerase, constitutive K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D XBJ1_3542 deoC; 2-deoxyribose-5-phosphate aldolase, NAD(P)-linked K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D XBJ1_0041 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D XBJ1_3540 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D XBJ1_1074 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D XBJ1_2198 prs; phosphoribosylpyrophosphate synthetase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D XBJ1_4005 eda; multifunctional: 2-keto-3-deoxygluconate 6-phosphate aldolase; 2-keto-4-hydroxyglutarate aldolase; oxaloacetate decarboxylase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D XBJ1_3723 gntK; gluconate kinase 2 in GNT I system, thermoresistant K00851 idnK; gluconokinase [EC:2.7.1.12]
D XBJ1_3083 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D XBJ1_0346 fbp; fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D XBJ1_4302 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00040 Pentose and glucuronate interconversions [PATH:xbo00040]
D XBJ1_4328 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D XBJ1_2434 putative UDP-glucose 6-dehydrogenase (Ugd) (Udg) K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D XBJ1_2435 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D XBJ1_0054 rpe; D-ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D XBJ1_4037 putative L-iditol 2-dehydrogenase K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
C 00051 Fructose and mannose metabolism [PATH:xbo00051]
D XBJ1_1702 mak; putative kinase/transcriptional regulator, actin-like ATPase domain (NagC/XylR (ROK) familiy) K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D XBJ1_2315 manA; mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D XBJ1_4302 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D XBJ1_0346 fbp; fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D XBJ1_2884 fruK; fructose-1-phosphate kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D XBJ1_4037 putative L-iditol 2-dehydrogenase K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D XBJ1_3083 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D XBJ1_4297 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D XBJ1_2565 manX; PTS family enzyme IIA (N-terminal); enzyme IIB (C-terminal), mannose-specific K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D XBJ1_2566 manY; PTS family enzyme IIC, mannose-specific K02795 manY; mannose PTS system EIIC component
D XBJ1_2567 manZ; PTS family enzyme IID, mannose-specific K02796 manZ; mannose PTS system EIID component
D XBJ1_1113 yfbT; putative phosphatase K19270 hxpA; mannitol-1-/sugar-/sorbitol-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50]
D XBJ1_2932 yfbT; putative phosphatase, contains a phosphatase-like domain K19270 hxpA; mannitol-1-/sugar-/sorbitol-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50]
C 00052 Galactose metabolism [PATH:xbo00052]
D XBJ1_3506 galE; UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D XBJ1_2435 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D XBJ1_1074 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D XBJ1_4302 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00053 Ascorbate and aldarate metabolism [PATH:xbo00053]
D XBJ1_4328 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D XBJ1_2434 putative UDP-glucose 6-dehydrogenase (Ugd) (Udg) K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D XBJ1_2433 putative epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D XBJ1_3649 aldB; aldehyde dehydrogenase B (lactaldehyde dehydrogenase) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00500 Starch and sucrose metabolism [PATH:xbo00500]
D XBJ1_2435 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D XBJ1_3727 chbA; PTS family enzyme IIA, cellobiose/arbutin/salicin sugar-specific K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D XBJ1_3729 chbB; PTS family enzyme IIB, cellobiose/arbutin/salicin sugar-specific K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D XBJ1_3728 PTS system, cellobiose-specific IIC component (CelB) K02761 celB; cellobiose PTS system EIIC component
D XBJ1_3726 chbF; phospho-beta-glucosidase, NAD(P)-binding (cellobiose-6-phosphate hydrolase) K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D XBJ1_4042 malP; maltodextrin phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D XBJ1_1072 Pullulanase precursor (Alpha-dextrin endo-1,6-alpha-glucosidase) (Pullulan 6-glucanohydrolase) K01200 pulA; pullulanase [EC:3.2.1.41]
D XBJ1_4043 malQ; 4-alpha-glucanotransferase (amylomaltase) K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D XBJ1_3127 crr; PTS family enzyme IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D XBJ1_0098 treB; PTS family enzyme IIBC, trehalose(maltose)-specific K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D XBJ1_0097 treC; trehalose-6-P hydrolase, alternative inducer of maltose system, cytoplasmic K01226 treC; trehalose-6-phosphate hydrolase [EC:3.2.1.93]
D XBJ1_1074 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D XBJ1_4002 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D XBJ1_1702 mak; putative kinase/transcriptional regulator, actin-like ATPase domain (NagC/XylR (ROK) familiy) K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:xbo00520]
D XBJ1_0567 Putative chitinase K01183 E3.2.1.14; chitinase [EC:3.2.1.14]
D XBJ1_0570 Putative chitinase K01183 E3.2.1.14; chitinase [EC:3.2.1.14]
D XBJ1_2846 nagZ; beta N-acetyl-glucosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D XBJ1_1109 Chitobiase (Precursor) K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D XBJ1_3127 crr; PTS family enzyme IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D XBJ1_3174 nagE; PTS family enzyme IIC (N-terminal); enzyme IIB (center); enzyme IIA (C-terminal), N-acetylglucosamine-specific K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D XBJ1_3176 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D XBJ1_3175 nagB; glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D XBJ1_1702 mak; putative kinase/transcriptional regulator, actin-like ATPase domain (NagC/XylR (ROK) familiy) K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D XBJ1_0019 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D XBJ1_0364 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D XBJ1_0020 glmU; bifunctional: N-acetyl glucosamine-1-phosphate uridyltransferase (N-terminal); glucosamine-1-phosphate acetyl transferase (C-terminal) K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D XBJ1_4085 yfeV; putative PTS family enzyme IIBC with sucrose/glucose-specific domain K11192 murP; N-acetylmuramic acid PTS system EIICB component [EC:2.7.1.192]
D XBJ1_4084 conserved hypothetical protein K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
D XBJ1_2488 conserved hypothetical protein K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D XBJ1_3836 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D XBJ1_4253 murB; UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D XBJ1_4176 rffE; UDP-N-acetyl glucosamine-2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D XBJ1_4175 rffD; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D XBJ1_4313 UDP-glucose 6-dehydrogenase K13015 wbpA; UDP-N-acetyl-D-glucosamine dehydrogenase [EC:1.1.1.136]
D XBJ1_4314 Inositol 2-dehydrogenase K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335]
D XBJ1_4316 Glutamine--scyllo-inositol transaminase K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D XBJ1_4315 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K13018 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase [EC:2.3.1.201]
D XBJ1_2534 arnA; putative formyltransferase K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305]
D XBJ1_2536 arnB; putative PLP-dependent aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D XBJ1_2535 arnC; putative sugar transferase with nucleotide-diphospho-sugar transferase domain K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D XBJ1_2533 PbgP4 protein K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-]
D XBJ1_1074 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D XBJ1_2435 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D XBJ1_4328 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D XBJ1_2434 putative UDP-glucose 6-dehydrogenase (Ugd) (Udg) K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D XBJ1_3506 galE; UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D XBJ1_2433 putative epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D XBJ1_2565 manX; PTS family enzyme IIA (N-terminal); enzyme IIB (C-terminal), mannose-specific K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D XBJ1_2566 manY; PTS family enzyme IIC, mannose-specific K02795 manY; mannose PTS system EIIC component
D XBJ1_2567 manZ; PTS family enzyme IID, mannose-specific K02796 manZ; mannose PTS system EIID component
D XBJ1_4002 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D XBJ1_2315 manA; mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
C 00620 Pyruvate metabolism [PATH:xbo00620]
D XBJ1_0050 acs; acetyl-CoA synthetase, has propionyl-CoA synthetase activity K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D XBJ1_3455 aceE; pyruvate dehydrogenase, decarboxylase subunit, thiamin-binding K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D XBJ1_3454 aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase subunit K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D XBJ1_3453 lpd; dihydrolipoamide dehydrogenase, FAD/NAD(P)-binding, component of the 2-oxoglutarate dehydrogenase and the pyruvate dehydrogenase complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D XBJ1_0821 pflB; pyruvate formate lyase I, induced anaerobically K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D XBJ1_0406 putative Succinate-semialdehyde dehydrogenase [NAD(P)+] K00132 E1.2.1.10; acetaldehyde dehydrogenase (acetylating) [EC:1.2.1.10]
D XBJ1_2430 adhE; multifunctional: acetaldehyde-CoA dehydrogenase (N-terminal); iron-dependent alcohol dehydrogenase (C-terminal); pyruvate-formate lyase deactivase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D XBJ1_0925 yiaY; putative alcohol dehydrogenase with dehydroquinate synthase-like domain K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D XBJ1_3896 adhC; alcohol dehydrogenase class III K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D XBJ1_2934 ackA; acetate kinase A (propionate kinase 2) K00925 ackA; acetate kinase [EC:2.7.2.1]
D XBJ1_2935 pta; phosphotransacetylase (phosphate acetyltransferase) K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D XBJ1_2503 pykF; pyruvate kinase I (formerly F), fructose-stimulated K00873 PK; pyruvate kinase [EC:2.7.1.40]
D XBJ1_2231 pykA; pyruvate kinase II, glucose-stimulated K00873 PK; pyruvate kinase [EC:2.7.1.40]
D XBJ1_0605 accA; acetylCoA carboxylase, carboxytransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D XBJ1_3798 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D XBJ1_3797 accC; acetyl CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D XBJ1_2963 accD; acetylCoA carboxylase, carboxyltranferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D XBJ1_0532 accA; bifunctional protein [Includes: biotin carboxylase; biotin carboxyl carrier protein] K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D XBJ1_0762 yccX; putative acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D XBJ1_3649 aldB; aldehyde dehydrogenase B (lactaldehyde dehydrogenase) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D XBJ1_0639 lldD; L-lactate dehydrogenase, FMN-linked K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
D XBJ1_2373 ldhA; fermentative D-lactate dehydrogenase, NAD-dependent K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D XBJ1_2871 dld; D-lactate dehydrogenase, NADH-independent, FAD-binding domain K03777 dld; D-lactate dehydrogenase (quinone) [EC:1.1.5.12]
D XBJ1_2491 gloA; glyoxalase I, nickel isomerase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D XBJ1_2164 gloA; glyoxalase I, nickel isomerase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D XBJ1_2174 putative Metallothiol transferase fosB (Fosfomycin resistance protein) K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D XBJ1_3072 gloB; putative hydroxyacylglutathione hydrolase with metallo-hydrolase/oxidoreductase domain K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D XBJ1_0797 ycbL; putative enzyme with metallo-hydrolase/oxidoreductase domain K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D XBJ1_2213 ghrA; 2-ketoacid reductase K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D XBJ1_0940 sfcA; NAD-linked malate dehydrogenase K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D XBJ1_2590 maeB; putative bifunctional: malic oxidoreductase (N-terminal); phosphotransacetylase (C-terminal) K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D XBJ1_0349 mdh; malate dehydrogenase, NAD(P)-binding K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D XBJ1_2316 fumC; fumarase C (fumarate hydratase Class II) K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D XBJ1_0537 frdA; fumarate reductase, anaerobic, catalytic and NAD/flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D XBJ1_0536 frdB; fumarate reductase, anaerobic, Fe-S subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D XBJ1_0535 frdC; fumarate reductase, anaerobic, membrane anchor polypeptide K00246 frdC; succinate dehydrogenase subunit C
D XBJ1_0534 frdD; fumarate reductase, anaerobic, membrane anchor polypeptide K00247 frdD; succinate dehydrogenase subunit D
D XBJ1_4275 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D XBJ1_0071 pck; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D XBJ1_2510 pps; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D XBJ1_4009 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9]
D XBJ1_3493 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:xbo00630]
D XBJ1_4008 aceA; isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1]
D XBJ1_0050 acs; acetyl-CoA synthetase, has propionyl-CoA synthetase activity K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D XBJ1_4009 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9]
D XBJ1_0349 mdh; malate dehydrogenase, NAD(P)-binding K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D XBJ1_1062 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D XBJ1_2292 acnA; aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D XBJ1_3452 acnB; bifunctional: aconitate hydratase 2; 2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D XBJ1_0532 accA; bifunctional protein [Includes: biotin carboxylase; biotin carboxyl carrier protein] K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D XBJ1_2213 ghrA; 2-ketoacid reductase K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D XBJ1_0053 gph; phosphoglycolate phosphatase, contains a phosphatase-like domain K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D XBJ1_0211 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D XBJ1_3033 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D XBJ1_3434 gcvP; glycine cleavage complex protein P, glycine decarboxylase, PLP-dependent K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D XBJ1_3436 gcvT; glycine cleavage complex protein T, aminomethyltransferase, tetrahydrofolate-dependent K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D XBJ1_3453 lpd; dihydrolipoamide dehydrogenase, FAD/NAD(P)-binding, component of the 2-oxoglutarate dehydrogenase and the pyruvate dehydrogenase complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D XBJ1_3435 gcvH; glycine cleavage complex protein H, carrier of aminomethyl moiety via covalently bound lipoyl cofactor K02437 gcvH; glycine cleavage system H protein
D XBJ1_0557 garK; glycerate kinase I K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D XBJ1_4005 eda; multifunctional: 2-keto-3-deoxygluconate 6-phosphate aldolase; 2-keto-4-hydroxyglutarate aldolase; oxaloacetate decarboxylase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D XBJ1_2438 purU; formyltetrahydrofolate hydrolase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
C 00640 Propanoate metabolism [PATH:xbo00640]
D XBJ1_0050 acs; acetyl-CoA synthetase, has propionyl-CoA synthetase activity K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D XBJ1_1347 prpE; putative acetyl-CoA synthetase of the propionate catabolism operon with firefly luciferase-like ATPase domain K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D XBJ1_2934 ackA; acetate kinase A (propionate kinase 2) K00925 ackA; acetate kinase [EC:2.7.2.1]
D XBJ1_2935 pta; phosphotransacetylase (phosphate acetyltransferase) K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D XBJ1_3453 lpd; dihydrolipoamide dehydrogenase, FAD/NAD(P)-binding, component of the 2-oxoglutarate dehydrogenase and the pyruvate dehydrogenase complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D XBJ1_0821 pflB; pyruvate formate lyase I, induced anaerobically K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D XBJ1_3800 yhdH; putative dehydrogenase, NAD(P)-binding domain and GroES-like domain K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D XBJ1_0122 paaF; enoyl-CoA hydratase-isomerase, phenylacetic acid degradation (strain W) K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D XBJ1_0517 fadB; multifunctional: 3-hydroxybutyryl-CoA epimerase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, enoyl-CoA hydratase (N-terminal); 3-hydroxyacyl-CoA dehydrogenase (C-terminal) K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D XBJ1_2992 fadJ; bifunctional anaerobic fatty acid oxidation complex protein: enoyl-CoA hydratase/epimerase/isomerase (N-terminal); 3-hydroxyacyl-CoA dehydrogenase (C-terminal) K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D XBJ1_0605 accA; acetylCoA carboxylase, carboxytransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D XBJ1_3798 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D XBJ1_3797 accC; acetyl CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D XBJ1_2963 accD; acetylCoA carboxylase, carboxyltranferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D XBJ1_0532 accA; bifunctional protein [Includes: biotin carboxylase; biotin carboxyl carrier protein] K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D XBJ1_0083 goaG; 4-aminobutyrate aminotransferase, PLP-dependent K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D XBJ1_1055 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D XBJ1_1054 sucD; succinyl-CoA synthetase, alpha subunit, NAD(P)-binding K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D XBJ1_1345 prpC; methylcitrate synthase (citrate synthase 2) K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D XBJ1_1346 prpD; 2-methyl citrate dehydratase K01720 prpD; 2-methylcitrate dehydratase [EC:4.2.1.79]
D XBJ1_3452 acnB; bifunctional: aconitate hydratase 2; 2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D XBJ1_1344 prpB; 2-methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30]
D XBJ1_0544 gldA; glycerol dehydrogenase, NAD K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]
C 00650 Butanoate metabolism [PATH:xbo00650]
D XBJ1_0120 paaH; 3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D XBJ1_2687 putative 3-hydroxybutyryl-CoA dehydrogenase (Beta-hydroxybutyryl-CoA dehydrogenase) (BHBD) K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D XBJ1_0517 fadB; multifunctional: 3-hydroxybutyryl-CoA epimerase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, enoyl-CoA hydratase (N-terminal); 3-hydroxyacyl-CoA dehydrogenase (C-terminal) K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D XBJ1_2992 fadJ; bifunctional anaerobic fatty acid oxidation complex protein: enoyl-CoA hydratase/epimerase/isomerase (N-terminal); 3-hydroxyacyl-CoA dehydrogenase (C-terminal) K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D XBJ1_0122 paaF; enoyl-CoA hydratase-isomerase, phenylacetic acid degradation (strain W) K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D XBJ1_0406 putative Succinate-semialdehyde dehydrogenase [NAD(P)+] K00132 E1.2.1.10; acetaldehyde dehydrogenase (acetylating) [EC:1.2.1.10]
D XBJ1_2430 adhE; multifunctional: acetaldehyde-CoA dehydrogenase (N-terminal); iron-dependent alcohol dehydrogenase (C-terminal); pyruvate-formate lyase deactivase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D XBJ1_1059 sdhA; succinate dehydrogenase, catalytic and NAD/flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D XBJ1_1058 sdhB; succinate dehydrogenase, Fe-S protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D XBJ1_1061 sdhC; succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with SdhD K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D XBJ1_1060 sdhD; succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with SdhC K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D XBJ1_0537 frdA; fumarate reductase, anaerobic, catalytic and NAD/flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D XBJ1_0536 frdB; fumarate reductase, anaerobic, Fe-S subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D XBJ1_0535 frdC; fumarate reductase, anaerobic, membrane anchor polypeptide K00246 frdC; succinate dehydrogenase subunit C
D XBJ1_0534 frdD; fumarate reductase, anaerobic, membrane anchor polypeptide K00247 frdD; succinate dehydrogenase subunit D
D XBJ1_0083 goaG; 4-aminobutyrate aminotransferase, PLP-dependent K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D XBJ1_0871 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D XBJ1_0821 pflB; pyruvate formate lyase I, induced anaerobically K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D XBJ1_3099 putative alcohol dehydrogenase K18369 adh2; alcohol dehydrogenase [EC:1.1.1.-]
D XBJ1_3488 ilvI; acetolactate synthase III, valine-sensitive, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D XBJ1_4195 ilvI; acetolactate synthase III, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D XBJ1_3901 putative Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D XBJ1_3487 ilvH; acetolactate synthase III, valine-sensitive, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D XBJ1_4194 ilvM; acetolactate synthase II, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D XBJ1_2718 Oxidoreductase K18009 budC; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304]
C 00660 C5-Branched dibasic acid metabolism [PATH:xbo00660]
D XBJ1_3488 ilvI; acetolactate synthase III, valine-sensitive, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D XBJ1_4195 ilvI; acetolactate synthase III, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D XBJ1_3901 putative Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D XBJ1_3487 ilvH; acetolactate synthase III, valine-sensitive, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D XBJ1_4194 ilvM; acetolactate synthase II, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D XBJ1_1055 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D XBJ1_1054 sucD; succinyl-CoA synthetase, alpha subunit, NAD(P)-binding K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D XBJ1_1452 leuC; 3-isopropylmalate isomerase, subunit with LeuD K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D XBJ1_1453 3-isopropylmalate dehydratase small subunit 1 (Isopropylmalate isomerase 1) (Alpha-IPM isomerase 1) (IPMI 1) K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D XBJ1_3494 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:xbo00562]
D XBJ1_3031 suhB; inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D XBJ1_4297 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:xbo00190]
D XBJ1_2924 nuoA; NADH dehydrogenase I chain A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D XBJ1_2923 nuoB; NADH dehydrogenase I chain B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D XBJ1_2922 nuoC; NADH dehydrogenase I chain C, D K13378 nuoCD; NADH-quinone oxidoreductase subunit C/D [EC:7.1.1.2]
D XBJ1_2921 nuoE; NADH dehydrogenase I chain E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D XBJ1_2920 nuoF; NADH dehydrogenase I chain F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D XBJ1_2919 nuoG; NADH dehydrogenase I chain G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D XBJ1_2918 nuoH; NADH dehydrogenase I chain H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D XBJ1_2917 nuoI; NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D XBJ1_2916 nuoJ; NADH dehydrogenase I chain J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D XBJ1_2915 nuoK; NADH dehydrogenase I chain K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D XBJ1_2914 nuoL; NADH dehydrogenase I chain L, membrane subunit K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D XBJ1_2913 nuoM; NADH dehydrogenase I chain M, membrane subunit K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D XBJ1_2912 nuoN; NADH dehydrogenase I chain N, membrane subunit K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D XBJ1_2845 ndh; respiratory NADH dehydrogenase 2; cupric reductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D XBJ1_1059 sdhA; succinate dehydrogenase, catalytic and NAD/flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D XBJ1_1058 sdhB; succinate dehydrogenase, Fe-S protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D XBJ1_1061 sdhC; succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with SdhD K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D XBJ1_1060 sdhD; succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with SdhC K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D XBJ1_0537 frdA; fumarate reductase, anaerobic, catalytic and NAD/flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D XBJ1_0536 frdB; fumarate reductase, anaerobic, Fe-S subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D XBJ1_0535 frdC; fumarate reductase, anaerobic, membrane anchor polypeptide K00246 frdC; succinate dehydrogenase subunit C
D XBJ1_0534 frdD; fumarate reductase, anaerobic, membrane anchor polypeptide K00247 frdD; succinate dehydrogenase subunit D
D XBJ1_1650 cyoE; protoheme IX farnesyltransferase (heme O biosynthesis) K02257 COX10; heme o synthase [EC:2.5.1.141]
D XBJ1_1649 cyoD; cytochrome o ubiquinol oxidase, subunit IV K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV
D XBJ1_1648 cyoC; cytochrome o ubiquinol oxidase, subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III
D XBJ1_1647 cyoB; cytochrome o ubiquinol oxidase, subunit I K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3]
D XBJ1_1646 cyoA; cytochrome o ubiquinol oxidase, subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3]
D XBJ1_1053 cydA; cytochrome d terminal oxidase, polypeptide subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D XBJ1_2126 cioA; ubiquinol oxidase subunit I, cyanide insensitive K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D XBJ1_1052 cydB; cytochrome d terminal oxidase, polypeptide subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D XBJ1_2125 cioB; ubiquinol oxidase subunit II, cyanide insensitive K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D XBJ1_1051 Protein ybgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D XBJ1_0024 atpA; membrane-bound ATP synthase, F1 sector, alpha-subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D XBJ1_0022 atpD; membrane-bound ATP synthase, F1 sector, beta-subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D XBJ1_0023 atpG; membrane-bound ATP synthase, F1 sector, gamma-subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D XBJ1_0025 atpH; membrane-bound ATP synthase, F1 sector, delta-subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D XBJ1_0021 atpC; membrane-bound ATP synthase, F1 sector, epsilon-subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D XBJ1_0028 atpB; membrane-bound ATP synthase, F0 sector, subunit a, important for FO assembly K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D XBJ1_0026 atpF; membrane-bound ATP synthase, F0 sector, subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D XBJ1_0027 atpE; membrane-bound ATP synthase, F0 sector, subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D XBJ1_0344 ppa; inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D XBJ1_2069 ppk; polyphosphate kinase, component of RNA degradosome K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:xbo00680]
D XBJ1_3896 adhC; alcohol dehydrogenase class III K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D XBJ1_3897 yaiM; putative esterase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D XBJ1_3033 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D XBJ1_3651 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D XBJ1_4275 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D XBJ1_0349 mdh; malate dehydrogenase, NAD(P)-binding K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D XBJ1_3083 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D XBJ1_0346 fbp; fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D XBJ1_4302 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D XBJ1_2934 ackA; acetate kinase A (propionate kinase 2) K00925 ackA; acetate kinase [EC:2.7.2.1]
D XBJ1_2935 pta; phosphotransacetylase (phosphate acetyltransferase) K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D XBJ1_0050 acs; acetyl-CoA synthetase, has propionyl-CoA synthetase activity K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D XBJ1_2510 pps; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D XBJ1_1038 gpmA; phosphoglyceromutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D XBJ1_3521 ytjC; putative phosphoglyceromutase 2 K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D XBJ1_3444 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D XBJ1_0817 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D XBJ1_3529 serB; 3-phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:xbo00910]
D XBJ1_0091 gdhA; glutamate dehydrogenase, NADP-specific K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D XBJ1_0211 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D XBJ1_3852 gltB; glutamate synthase, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D XBJ1_3851 gltD; glutamate synthase, small subunit, nucleotide-binding, 4Fe-4S protein K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D XBJ1_3681 yadF; putative beta-carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:xbo00920]
D XBJ1_3133 cysP; thiosulfate transport protein (ABC superfamily, peri_bind) K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D XBJ1_4301 sbp; sulfate transport protein (ABC superfamily, peri_bind) K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D XBJ1_3132 cysU; thiosulfate transport protein (ABC superfamily, membrane) K02046 cysU; sulfate/thiosulfate transport system permease protein
D XBJ1_3131 cysW; thiosulfate permease W protein (ABC superfamily, membrane) K02047 cysW; sulfate/thiosulfate transport system permease protein
D XBJ1_3129 cysA; sulfate permease A protein, chromate resistance (ABC superfamily, atp_bind) K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D XBJ1_3607 cysN; ATP-sulfurylase, subunit 1 (ATP:sulfate adenylyltransferase) K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D XBJ1_3608 cysD; ATP-sulfurylase, subunit 2 (ATP:sulfate adenylyltransferase) K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D XBJ1_3606 cysC; adenosine 5'-phosphosulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D XBJ1_0334 cysQ; protein that acts on 3'-phosphoadenosine-5'-phosphosulfate with sugar phosphatase domain K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D XBJ1_3610 cysH; 3'-phosphoadenosine 5'-phosphosulfate (PAPS) reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D XBJ1_3612 cysJ; sulfite reductase, alpha subunit (flavoprotein) K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D XBJ1_3611 cysI; sulfite reductase, beta subunit, NADPH-dependent hemoprotein K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D XBJ1_0966 sseA; 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D XBJ1_0142 glpE; thiosulfate:cyanide sulfurtransferase (rhodanese) K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1]
D XBJ1_4330 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D XBJ1_1629 putative Cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D XBJ1_3122 cysK; subunit of cysteine synthase A and O-acetylserine sulfhydrolase A, PLP-dependent enzyme K01738 cysK; cysteine synthase [EC:2.5.1.47]
D XBJ1_4010 metA; homoserine transsuccinylase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D XBJ1_4277 metB; cystathionine gamma-synthase, PLP-dependent K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:xbo00061]
D XBJ1_0605 accA; acetylCoA carboxylase, carboxytransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D XBJ1_3798 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D XBJ1_3797 accC; acetyl CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D XBJ1_2963 accD; acetylCoA carboxylase, carboxyltranferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D XBJ1_0532 accA; bifunctional protein [Includes: biotin carboxylase; biotin carboxyl carrier protein] K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D XBJ1_2857 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D XBJ1_2860 fabD; malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D XBJ1_2696 putative [Acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D XBJ1_3898 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D XBJ1_2861 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III; acetylCoA ACP transacylase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D XBJ1_3900 hypothetical protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D XBJ1_3894 putative 3-oxoacyl-[acyl-carrier-protein] synthase K18473 fabY; acetoacetyl-[acyl-carrier protein] synthase [EC:2.3.1.180]
D XBJ1_2975 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D XBJ1_2855 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D XBJ1_1403 3-ketoacyl-CoA reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D XBJ1_2859 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D XBJ1_2950 3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D XBJ1_0781 fabA; beta-hydroxydecanoyl thioester dehydrase (trans-2-decenoyl-ACP isomerase) K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D XBJ1_0600 fabZ; (3R)-hydroxymyristol acyl carrier protein dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D XBJ1_2481 fabI; enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D XBJ1_3489 putative long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase) (LACS) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D XBJ1_2242 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:xbo00071]
D XBJ1_0516 fadA; 3-ketoacyl-CoA thiolase; (thiolase I, acetyl-CoA transferase), in complex with FadB catalyzes K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D XBJ1_2993 fadI; beta-keto thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D XBJ1_0517 fadB; multifunctional: 3-hydroxybutyryl-CoA epimerase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, enoyl-CoA hydratase (N-terminal); 3-hydroxyacyl-CoA dehydrogenase (C-terminal) K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D XBJ1_2992 fadJ; bifunctional anaerobic fatty acid oxidation complex protein: enoyl-CoA hydratase/epimerase/isomerase (N-terminal); 3-hydroxyacyl-CoA dehydrogenase (C-terminal) K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D XBJ1_0122 paaF; enoyl-CoA hydratase-isomerase, phenylacetic acid degradation (strain W) K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D XBJ1_3330 fadE; acyl coenzyme A dehydrogenase K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-]
D XBJ1_3489 putative long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase) (LACS) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D XBJ1_2242 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D XBJ1_3290 bifunctional: 2-acylglycerophospho-ethanolamine acyl transferase (N-terminal); acyl-acyl carrier protein synthetase (C-terminal) (fragment) K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D XBJ1_3896 adhC; alcohol dehydrogenase class III K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D XBJ1_2430 adhE; multifunctional: acetaldehyde-CoA dehydrogenase (N-terminal); iron-dependent alcohol dehydrogenase (C-terminal); pyruvate-formate lyase deactivase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D XBJ1_0925 yiaY; putative alcohol dehydrogenase with dehydroquinate synthase-like domain K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D XBJ1_3649 aldB; aldehyde dehydrogenase B (lactaldehyde dehydrogenase) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:xbo00561]
D XBJ1_0557 garK; glycerate kinase I K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D XBJ1_3649 aldB; aldehyde dehydrogenase B (lactaldehyde dehydrogenase) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D XBJ1_0544 gldA; glycerol dehydrogenase, NAD K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]
D XBJ1_4291 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D XBJ1_3999 plsB; glycerolphosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D XBJ1_2862 plsX; fatty acid/phospholipid synthesis protein, methyltransferase domain K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D XBJ1_1829 ygiH; putative membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D XBJ1_1808 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D XBJ1_3998 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D XBJ1_3503 hypothetical protein K01046 lip; triacylglycerol lipase [EC:3.1.1.3]
C 00564 Glycerophospholipid metabolism [PATH:xbo00564]
D XBJ1_4331 gpsA; glycerol-3-phosphate dehydrogenase (NAD+) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D XBJ1_0138 glpD; sn-glycerol-3-phosphate dehydrogenase FAD/NAD(P)-binding (aerobic) K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D XBJ1_3999 plsB; glycerolphosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D XBJ1_1829 ygiH; putative membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D XBJ1_1808 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D XBJ1_3998 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D XBJ1_4143 pldB; lysophospholipase L(2) K01048 pldB; lysophospholipase [EC:3.1.1.5]
D XBJ1_0541 glpQ; glycerophosphodiester phosphodiesterase, periplasmic K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D XBJ1_3290 bifunctional: 2-acylglycerophospho-ethanolamine acyl transferase (N-terminal); acyl-acyl carrier protein synthetase (C-terminal) (fragment) K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D XBJ1_0595 cdsA; CDP-diglyceride synthase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D XBJ1_4304 ynbB; putative phosphatidate cytidiltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D XBJ1_3251 pssA; phosphatidylserine synthase (CDP-diacylglycerol-serine O-phosphatidyltransferase) K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D XBJ1_4130 psd; phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D XBJ1_2674 pgsA; phosphatidylglycerophosphate synthetase (CDP-1,2-diacyl-sn-glycero-3-phosphate phosphatidyl transferase) K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D XBJ1_1668 pgpA; phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D XBJ1_2417 cls; cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism [PATH:xbo00600]
D XBJ1_1109 Chitobiase (Precursor) K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism [PATH:xbo00592]
D XBJ1_0516 fadA; 3-ketoacyl-CoA thiolase; (thiolase I, acetyl-CoA transferase), in complex with FadB catalyzes K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D XBJ1_2993 fadI; beta-keto thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:xbo01040]
D XBJ1_1589 tesA; multifunctional: acyl-CoA thioesterase I; protease I; lysophospholipaseL(I) K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D XBJ1_2413 yciA; putative enzyme with thioesterase/thiol ester dehydrase-isomerase domain K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:xbo00230]
D XBJ1_1813 nudF; adenosine diphosphate sugar pyrophosphatase (ADP-ribose pyrophosphatase) K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D XBJ1_0067 Nudix hydrolase, active on adenosine(5')triphospho(5')adenosine, adenosine(5')diphospho(5')adenosine, ADP-ribose and NADH (fragment) K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-]
D XBJ1_3540 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D XBJ1_1074 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D XBJ1_2198 prs; phosphoribosylpyrophosphate synthetase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D XBJ1_2959 purF; amidophosphoribosyltransferase (PRPP amidotransferase) K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D XBJ1_4019 purD; phosphoribosylglycinamide synthetase (GAR synthetase) K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D XBJ1_2072 purN; phosphoribosylglycinamide formyltransferase 1 K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D XBJ1_3040 purL; phosphoribosylformyl-glycineamide synthetase (FGAM synthetase) K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D XBJ1_2073 purM; phosphoribosylaminoimidazole synthetase (AIR synthetase) K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D XBJ1_3097 purK; phosphoribosylaminoimidazole carboxylase = AIR carboxylase, CO(2)-fixing subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D XBJ1_3096 purE; phosphoribosylaminoimidazole carboxylase = AIR carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D XBJ1_2632 purC; phosphoribosylaminoimidazole-succinocarboxamide synthetase (SAICAR synthetase) K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D XBJ1_2833 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D XBJ1_4018 purH; bifunctional: IMP cyclohydrolase (N-terminal); phosphoribosylaminoimidazolecarboxamide formyltransferase (C-terminal) K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D XBJ1_1612 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D XBJ1_1598 ushA; bifunctional: UDP-sugar hydrolase; 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D XBJ1_3584 surE; survival protein, protein damage control K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D XBJ1_1602 gsk; inosine-guanosine kinase K00892 gsk; inosine kinase [EC:2.7.1.73]
D XBJ1_3539 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D XBJ1_3258 conserved hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D XBJ1_3558 rihB; ribonucleoside hydrolase 2, pyrimidine-specific, silent K25589 inuH; inosine/uridine nucleosidase [EC:3.2.2.2 3.2.2.3]
D XBJ1_3682 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D XBJ1_2584 guaB; IMP dehydrogeanse K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D XBJ1_3013 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D XBJ1_3522 conserved hypothetical protein K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73]
D XBJ1_3345 putative protein controls HAP (6-N-hydroxylaminopurine) mutagenesis (Ham1) K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D XBJ1_3299 gpt; guanine-hypoxanthine phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D XBJ1_2583 guaA; GMP synthetase (glutamine aminotransferase) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D XBJ1_0235 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D XBJ1_0728 nrdA; ribonucleoside diphosphate reductase 1, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D XBJ1_0727 nrdB; ribonucleoside-diphosphate reductase 1, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D XBJ1_3657 dgt; deoxyguanosine triphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D XBJ1_2930 putative 5'-nucleotidase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D XBJ1_0233 spoT; bifunctional: (p)ppGpp synthetase II; guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D XBJ1_4185 gpp; guanosine pentaphosphatase, also has exopolyphosphatase activity K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D XBJ1_2068 ppx; exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D XBJ1_3654 relA; (p)ppGpp synthetase I (GTP pyrophosphokinase) K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D XBJ1_4158 cyaA; adenylate cyclase K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1]
D XBJ1_0325 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D XBJ1_2313 add; adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4]
D XBJ1_0577 conserved hypothetical protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D XBJ1_1698 cpdB; 2':3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D XBJ1_1605 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D XBJ1_3653 Protein mazG K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D XBJ1_1812 cpdA; cyclic 3',5'-adenosine monophosphate phosphodiesterase K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D XBJ1_0953 hypothetical protein K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D XBJ1_1804 apaH; diadenosine tetraphosphatase K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D XBJ1_3606 cysC; adenosine 5'-phosphosulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D XBJ1_3607 cysN; ATP-sulfurylase, subunit 1 (ATP:sulfate adenylyltransferase) K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D XBJ1_3608 cysD; ATP-sulfurylase, subunit 2 (ATP:sulfate adenylyltransferase) K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
C 00240 Pyrimidine metabolism [PATH:xbo00240]
D XBJ1_1720 carB; carbamoyl phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D XBJ1_1721 carA; carbamoyl phosphate synthetase, glutamine amidotransferase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D XBJ1_0400 pyrB; aspartate carbamoyltransferase, catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D XBJ1_0828 putative Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D XBJ1_0393 pyrI; aspartate carbamoyltransferase, regulatory subunit (allosteric regulation) K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D XBJ1_1900 pyrC; dihydro-orotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D XBJ1_0790 pyrD; dihydro-orotate oxidase, FMN-linked K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D XBJ1_4365 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D XBJ1_2299 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D XBJ1_0591 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D XBJ1_3013 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D XBJ1_3653 Protein mazG K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D XBJ1_3805 putative Maf-like protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D XBJ1_3652 pyrG; CTP synthetase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D XBJ1_0815 cmk; cytidine monophosphate (CMP) kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D XBJ1_0933 udk; uridine/cytidine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D XBJ1_1598 ushA; bifunctional: UDP-sugar hydrolase; 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D XBJ1_3584 surE; survival protein, protein damage control K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D XBJ1_3558 rihB; ribonucleoside hydrolase 2, pyrimidine-specific, silent K25589 inuH; inosine/uridine nucleosidase [EC:3.2.2.2 3.2.2.3]
D XBJ1_0502 udp; uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D XBJ1_2617 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D XBJ1_1698 cpdB; 2':3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D XBJ1_0426 yeiC; putative sugar kinase with ribokinase-like domain K16328 psuK; pseudouridine kinase [EC:2.7.1.83]
D XBJ1_2250 conserved hypothetical protein K16329 psuG; pseudouridylate synthase [EC:4.2.1.70]
D XBJ1_0577 conserved hypothetical protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D XBJ1_0939 cdd; cytidine/deoxycytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D XBJ1_0932 dcd; 2'-deoxycytidine 5'-triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D XBJ1_0728 nrdA; ribonucleoside diphosphate reductase 1, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D XBJ1_0727 nrdB; ribonucleoside-diphosphate reductase 1, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D XBJ1_2930 putative 5'-nucleotidase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D XBJ1_2852 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D XBJ1_4363 dut; deoxyuridinetriphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D XBJ1_3541 deoA; thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4]
D XBJ1_2431 tdk; thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D XBJ1_3691 thyA; thymidylate synthetase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D XBJ1_1586 putative enzyme with luciferase-like ATPase domain K09018 rutA; pyrimidine oxygenase [EC:1.14.99.46]
D XBJ1_2327 ydfG; putative oxidoreductase, NAD(P)-binding domain K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:xbo00250]
D XBJ1_0796 aspC; aspartate aminotransferase, PLP-dependent K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D XBJ1_0108 putative aspartate/glutamate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D XBJ1_2448 ansA; cytoplasmic L-asparaginase I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D XBJ1_0818 ansB; periplasmic L-asparaginase II K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D XBJ1_0034 asnA; asparagine synthetase A K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D XBJ1_4320 conserved hypothetical protein K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D XBJ1_3770 conserved hypothetical protein K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D XBJ1_2948 yafV; putative NAD(P)-binding amidase-type enzyme with nitrilase/N-carbamoyl-D-aminoacid amidohydrolase K13566 NIT2; omega-amidase [EC:3.5.1.3]
D XBJ1_2928 yfbQ; putative PLP-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D XBJ1_3573 aspA; aspartate ammonia-lyase (aspartase) K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D XBJ1_4269 Argininosuccinate synthase (Citrulline--aspartate ligase) K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D XBJ1_4268 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D XBJ1_0325 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D XBJ1_2833 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D XBJ1_0400 pyrB; aspartate carbamoyltransferase, catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D XBJ1_0828 putative Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D XBJ1_0393 pyrI; aspartate carbamoyltransferase, regulatory subunit (allosteric regulation) K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D XBJ1_0083 goaG; 4-aminobutyrate aminotransferase, PLP-dependent K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D XBJ1_0871 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D XBJ1_3852 gltB; glutamate synthase, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D XBJ1_3851 gltD; glutamate synthase, small subunit, nucleotide-binding, 4Fe-4S protein K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D XBJ1_0091 gdhA; glutamate dehydrogenase, NADP-specific K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D XBJ1_1998 putA; multifunctional: transcriptional repressor of proline utilization; proline dehydrogenase; pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D XBJ1_0211 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D XBJ1_1720 carB; carbamoyl phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D XBJ1_1721 carA; carbamoyl phosphate synthetase, glutamine amidotransferase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D XBJ1_3349 yneH; putative glutaminase/carboxypeptidase K01425 glsA; glutaminase [EC:3.5.1.2]
D XBJ1_0019 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D XBJ1_2959 purF; amidophosphoribosyltransferase (PRPP amidotransferase) K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:xbo00260]
D XBJ1_4003 lysC; aspartokinase III, lysine sensitive K00928 lysC; aspartate kinase [EC:2.7.2.4]
D XBJ1_3515 thrA; bifunctional: aspartokinase I (N-terminal); homoserine dehydrogenase I (C-terminal), threonine sensitive K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D XBJ1_4276 metL; bifunctional: aspartokinase II (N-terminal); homoserine dehydrogenase II (C-terminal), methionine sensitive K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D XBJ1_0008 asd; aspartate-semialdehyde dehydrogenase, NAD(P)-binding K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D XBJ1_3514 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D XBJ1_3513 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D XBJ1_3033 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D XBJ1_2213 ghrA; 2-ketoacid reductase K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D XBJ1_0557 garK; glycerate kinase I K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D XBJ1_1038 gpmA; phosphoglyceromutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D XBJ1_3521 ytjC; putative phosphoglyceromutase 2 K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D XBJ1_3444 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D XBJ1_0817 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D XBJ1_3529 serB; 3-phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D XBJ1_2327 ydfG; putative oxidoreductase, NAD(P)-binding domain K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
D XBJ1_4337 kbl; 2-amino-3-ketobutyrate CoA ligase (glycine acetyltransferase) K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D XBJ1_4336 tdh; threonine 3-dehydrogenase, NAD(P)-binding K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103]
D XBJ1_3434 gcvP; glycine cleavage complex protein P, glycine decarboxylase, PLP-dependent K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D XBJ1_3436 gcvT; glycine cleavage complex protein T, aminomethyltransferase, tetrahydrofolate-dependent K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D XBJ1_3453 lpd; dihydrolipoamide dehydrogenase, FAD/NAD(P)-binding, component of the 2-oxoglutarate dehydrogenase and the pyruvate dehydrogenase complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D XBJ1_3435 gcvH; glycine cleavage complex protein H, carrier of aminomethyl moiety via covalently bound lipoyl cofactor K02437 gcvH; glycine cleavage system H protein
D XBJ1_3251 pssA; phosphatidylserine synthase (CDP-diacylglycerol-serine O-phosphatidyltransferase) K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D XBJ1_3308 betA; choline dehydrogenase, a flavoprotein K00108 betA; choline dehydrogenase [EC:1.1.99.1]
D XBJ1_3307 betB; NAD+-dependent betaine aldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]
D XBJ1_0079 ydcW; putative aldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]
D XBJ1_3501 Cysteine synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D XBJ1_3500 metB; cystathionine gamma-synthase, PLP-dependent K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D XBJ1_2564 sdaA; L-serine deaminase I K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D XBJ1_4191 ilvA; threonine deaminase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D XBJ1_3817 Alanine racemase 2 K25317 alr; amino-acid racemase [EC:5.1.1.10]
D XBJ1_2274 trpA; tryptophan synthase, alpha protein K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D XBJ1_2275 trpB; tryptophan synthase, beta protein K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:xbo00270]
D XBJ1_4330 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D XBJ1_1629 putative Cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D XBJ1_3122 cysK; subunit of cysteine synthase A and O-acetylserine sulfhydrolase A, PLP-dependent enzyme K01738 cysK; cysteine synthase [EC:2.5.1.47]
D XBJ1_3500 metB; cystathionine gamma-synthase, PLP-dependent K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D XBJ1_1716 metC; cystathionine beta-lyase, PLP-dependent (beta-cystathionase) K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D XBJ1_3501 Cysteine synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D XBJ1_0499 metE; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D XBJ1_3643 metK; methionine adenosyltransferase 1 (AdoMet synthetase) K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D XBJ1_3658 mtn; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D XBJ1_3258 conserved hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D XBJ1_3911 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D XBJ1_2553 conserved hypothetical protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D XBJ1_3281 luxS; quorum-sensing protein, produces autoinducer-acyl-homoserine lactone-signaling molecules K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D XBJ1_4003 lysC; aspartokinase III, lysine sensitive K00928 lysC; aspartate kinase [EC:2.7.2.4]
D XBJ1_3515 thrA; bifunctional: aspartokinase I (N-terminal); homoserine dehydrogenase I (C-terminal), threonine sensitive K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D XBJ1_4276 metL; bifunctional: aspartokinase II (N-terminal); homoserine dehydrogenase II (C-terminal), methionine sensitive K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D XBJ1_0008 asd; aspartate-semialdehyde dehydrogenase, NAD(P)-binding K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D XBJ1_4010 metA; homoserine transsuccinylase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D XBJ1_4277 metB; cystathionine gamma-synthase, PLP-dependent K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D XBJ1_0485 metY; homocysteine synthase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D XBJ1_4193 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D XBJ1_3282 gshA; gamma-glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D XBJ1_3338 gshB; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D XBJ1_0796 aspC; aspartate aminotransferase, PLP-dependent K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D XBJ1_0966 sseA; 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D XBJ1_3817 Alanine racemase 2 K25317 alr; amino-acid racemase [EC:5.1.1.10]
D XBJ1_0349 mdh; malate dehydrogenase, NAD(P)-binding K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D XBJ1_2564 sdaA; L-serine deaminase I K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D XBJ1_3128 cysM; cysteine synthase B (O-acetylserine sulfhydrolase B) K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D XBJ1_3444 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D XBJ1_0817 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:xbo00280]
D XBJ1_4193 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D XBJ1_3453 lpd; dihydrolipoamide dehydrogenase, FAD/NAD(P)-binding, component of the 2-oxoglutarate dehydrogenase and the pyruvate dehydrogenase complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D XBJ1_0122 paaF; enoyl-CoA hydratase-isomerase, phenylacetic acid degradation (strain W) K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D XBJ1_0517 fadB; multifunctional: 3-hydroxybutyryl-CoA epimerase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, enoyl-CoA hydratase (N-terminal); 3-hydroxyacyl-CoA dehydrogenase (C-terminal) K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D XBJ1_2992 fadJ; bifunctional anaerobic fatty acid oxidation complex protein: enoyl-CoA hydratase/epimerase/isomerase (N-terminal); 3-hydroxyacyl-CoA dehydrogenase (C-terminal) K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D XBJ1_0516 fadA; 3-ketoacyl-CoA thiolase; (thiolase I, acetyl-CoA transferase), in complex with FadB catalyzes K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D XBJ1_2993 fadI; beta-keto thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D XBJ1_0532 accA; bifunctional protein [Includes: biotin carboxylase; biotin carboxyl carrier protein] K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D XBJ1_2393 3-hydroxyisobutyrate dehydrogenase family protein K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D XBJ1_3649 aldB; aldehyde dehydrogenase B (lactaldehyde dehydrogenase) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:xbo00290]
D XBJ1_4191 ilvA; threonine deaminase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D XBJ1_1452 leuC; 3-isopropylmalate isomerase, subunit with LeuD K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D XBJ1_1453 3-isopropylmalate dehydratase small subunit 1 (Isopropylmalate isomerase 1) (Alpha-IPM isomerase 1) (IPMI 1) K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D XBJ1_3494 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D XBJ1_3488 ilvI; acetolactate synthase III, valine-sensitive, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D XBJ1_4195 ilvI; acetolactate synthase III, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D XBJ1_3901 putative Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D XBJ1_3487 ilvH; acetolactate synthase III, valine-sensitive, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D XBJ1_4194 ilvM; acetolactate synthase II, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D XBJ1_4189 ilvC; ketol-acid reductoisomerase, NAD(P)-binding K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D XBJ1_4192 ilvD; dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D XBJ1_4193 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D XBJ1_0241 avtA; valine-pyruvate aminotransferase K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66]
D XBJ1_2928 yfbQ; putative PLP-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D XBJ1_3493 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:xbo00300]
D XBJ1_4003 lysC; aspartokinase III, lysine sensitive K00928 lysC; aspartate kinase [EC:2.7.2.4]
D XBJ1_3515 thrA; bifunctional: aspartokinase I (N-terminal); homoserine dehydrogenase I (C-terminal), threonine sensitive K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D XBJ1_4276 metL; bifunctional: aspartokinase II (N-terminal); homoserine dehydrogenase II (C-terminal), methionine sensitive K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D XBJ1_0008 asd; aspartate-semialdehyde dehydrogenase, NAD(P)-binding K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D XBJ1_2630 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D XBJ1_1722 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D XBJ1_0586 dapD; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D XBJ1_2595 dapE; N-succinyl-diaminopimelate deacylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D XBJ1_4155 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D XBJ1_3331 lysA; diaminopimelate decarboxylase, PLP-binding K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D XBJ1_3481 murE; UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D XBJ1_3480 murF; D-alanine:D-alanine-adding enzyme K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:xbo00310]
D XBJ1_1056 sucB; dihydrolipoyltranssuccinate transferase, component of the 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D XBJ1_3453 lpd; dihydrolipoamide dehydrogenase, FAD/NAD(P)-binding, component of the 2-oxoglutarate dehydrogenase and the pyruvate dehydrogenase complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D XBJ1_0122 paaF; enoyl-CoA hydratase-isomerase, phenylacetic acid degradation (strain W) K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D XBJ1_0517 fadB; multifunctional: 3-hydroxybutyryl-CoA epimerase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, enoyl-CoA hydratase (N-terminal); 3-hydroxyacyl-CoA dehydrogenase (C-terminal) K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D XBJ1_2992 fadJ; bifunctional anaerobic fatty acid oxidation complex protein: enoyl-CoA hydratase/epimerase/isomerase (N-terminal); 3-hydroxyacyl-CoA dehydrogenase (C-terminal) K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D XBJ1_3817 Alanine racemase 2 K25317 alr; amino-acid racemase [EC:5.1.1.10]
D XBJ1_0871 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D XBJ1_2508 ydiJ; putative oxidase, with FAD-binding domains K26063 ydiJ; (R)-2-hydroxyglutarate dehydrogenase [EC:1.1.-.-]
D XBJ1_1660 Arginine aminomutase, putative (fragment) K01843 kamA; lysine 2,3-aminomutase [EC:5.4.3.2]
D XBJ1_3649 aldB; aldehyde dehydrogenase B (lactaldehyde dehydrogenase) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00220 Arginine biosynthesis [PATH:xbo00220]
D XBJ1_0427 argI; ornithine carbamoyltransferase 1 K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D XBJ1_4269 Argininosuccinate synthase (Citrulline--aspartate ligase) K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D XBJ1_4268 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D XBJ1_3349 yneH; putative glutaminase/carboxypeptidase K01425 glsA; glutaminase [EC:3.5.1.2]
D XBJ1_0211 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D XBJ1_1720 carB; carbamoyl phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D XBJ1_1721 carA; carbamoyl phosphate synthetase, glutamine amidotransferase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D XBJ1_0091 gdhA; glutamate dehydrogenase, NADP-specific K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D XBJ1_0796 aspC; aspartate aminotransferase, PLP-dependent K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D XBJ1_2928 yfbQ; putative PLP-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D XBJ1_3701 argA; N-alpha-acetylglutamate synthase (amino-acid acetyltransferase) K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]
D XBJ1_4270 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D XBJ1_4271 argC; N-acetyl-gamma-glutamylphosphate reductase, NAD(P)-binding K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D XBJ1_4272 argE; acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:xbo00330]
D XBJ1_2247 adiA; arginine decarboxylase, inducible by acid, catabolic K01584 adiA; arginine decarboxylase [EC:4.1.1.19]
D XBJ1_3641 speA; arginine decarboxylase, PLP-binding, biosynthetic K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D XBJ1_1449 speB; agmatinase K01480 speB; agmatinase [EC:3.5.3.11]
D XBJ1_3649 aldB; aldehyde dehydrogenase B (lactaldehyde dehydrogenase) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D XBJ1_2070 speG; spermidine N1-acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57]
D XBJ1_2087 GCN5-related N-acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57]
D XBJ1_2941 astA; arginine succinyltransferase K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109]
D XBJ1_2939 astB; succinylarginine dihydrolase K01484 astB; succinylarginine dihydrolase [EC:3.5.3.23]
D XBJ1_2942 argM; succinylornithine transaminase, also has acetylornitine transaminase activity, PLP-dependent K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81]
D XBJ1_2940 astD; succinylglutamic semialdehyde dehydrogenase K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71]
D XBJ1_2938 astE; succinylglutamate desuccinylase K05526 astE; succinylglutamate desuccinylase [EC:3.5.1.96]
D XBJ1_0085 FAD dependent oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-]
D XBJ1_3557 putative oxidoreductase with FAD/NAD(P)-binding domain K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-]
D XBJ1_3343 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D XBJ1_1998 putA; multifunctional: transcriptional repressor of proline utilization; proline dehydrogenase; pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D XBJ1_3296 proB; gamma-glutamate kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D XBJ1_3295 proA; gamma-glutamylphosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D XBJ1_2559 Proline iminopeptidase (PIP) (Prolyl aminopeptidase) (PAP) K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D XBJ1_0796 aspC; aspartate aminotransferase, PLP-dependent K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:xbo00340]
D XBJ1_0916 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D XBJ1_0923 hisI; bifunctional: phosphoribosyl-AMP cyclohydrolase (N-terminal); phosphoribosyl-ATP pyrophosphatase (C-terminal) K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D XBJ1_0921 hisA; N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D XBJ1_0920 hisH; glutamine amidotransferase, subunit with HisF K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D XBJ1_0922 hisF; imidazole glycerol phosphate synthase, subunit with HisH K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D XBJ1_0919 hisB; modular bifunctional: histidinol-phosphatase (N-terminal); imidazoleglycerol-phosphate dehydratase (C-terminal) K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
D XBJ1_0918 hisC; histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D XBJ1_0917 hisD; bifunctional HisD: L-histidinal:NAD+ dehydrogenase; L-histidinol:NAD+ dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D XBJ1_2984 Histidine ammonia-lyase (Histidase) K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D XBJ1_2985 Urocanate hydratase (Urocanase) (Imidazolonepropionate hydrolase) K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D XBJ1_2988 Imidazolonepropionase (Imidazolone-5-propionate hydrolase) K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
D XBJ1_2987 Formimidoylglutamase (Formiminoglutamase) (Formiminoglutamate hydrolase) K01479 hutG; formiminoglutamase [EC:3.5.3.8]
D XBJ1_3649 aldB; aldehyde dehydrogenase B (lactaldehyde dehydrogenase) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00350 Tyrosine metabolism [PATH:xbo00350]
D XBJ1_0796 aspC; aspartate aminotransferase, PLP-dependent K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D XBJ1_0918 hisC; histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D XBJ1_3911 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D XBJ1_3555 feaB; phenylacetaldehyde dehydrogenase K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39]
D XBJ1_3896 adhC; alcohol dehydrogenase class III K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D XBJ1_2430 adhE; multifunctional: acetaldehyde-CoA dehydrogenase (N-terminal); iron-dependent alcohol dehydrogenase (C-terminal); pyruvate-formate lyase deactivase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D XBJ1_0925 yiaY; putative alcohol dehydrogenase with dehydroquinate synthase-like domain K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D XBJ1_3600 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component (4-HPA 3-monooxygenase large component) (4-HPA 3-hydroxylase) K00483 hpaB; 4-hydroxyphenylacetate 3-monooxygenase [EC:1.14.14.9]
D XBJ1_3599 ycdH; putative oxidoreductase component with FMN-binding split barrel domain K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36]
D XBJ1_0869 3,4-dihydroxyphenylacetate 2,3-dioxygenase (Homoprotocatechuate 2,3-dioxygenase) (HPC dioxygenase) K00455 hpaD; 3,4-dihydroxyphenylacetate 2,3-dioxygenase [EC:1.13.11.15]
D XBJ1_0868 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (CHMS dehydrogenase) K00151 hpaE; 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase [EC:1.2.1.60]
D XBJ1_0870 5-carboxymethyl-2-hydroxymuconate delta-isomerase (5-carboxymethyl-2-hydroxymuconic acid isomerase) (CHM isomerase) (CHMI) K01826 hpaF; 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10]
D XBJ1_0866 HpaG1 protein K05921 hpaG; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-]
D XBJ1_0867 HpaG2 K05921 hpaG; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-]
D XBJ1_0872 2-oxo-hepta-3-ene-1,7-dioic acid hydratase (OHED hydratase) K02509 hpaH; 2-oxo-hept-3-ene-1,7-dioate hydratase [EC:4.2.1.-]
D XBJ1_0873 yfaU; putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase, with PEP/pyruvate domain K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52]
D XBJ1_0871 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00360 Phenylalanine metabolism [PATH:xbo00360]
D XBJ1_3555 feaB; phenylacetaldehyde dehydrogenase K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39]
D XBJ1_0117 paaK; phenylacetyl-CoA ligase, phenylacetic acid degradation K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]
D XBJ1_0119 paaI; putative phenylacetic acid degradation protein with thioesterase/thiol ester dehydrase-isomerase domain K02614 paaI; acyl-CoA thioesterase [EC:3.1.2.-]
D XBJ1_0127 paaA; putative subunit of multicomponent oxygenase, phenylacetic acid degradation with ferritin-like domain K02609 paaA; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149]
D XBJ1_0126 paaB; putative subunit of multicomponent oxygenase, phenylacetic acid degradation K02610 paaB; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB
D XBJ1_0125 paaC; putative subunit of multicomponent oxygenase, phenylacetic acid degradation K02611 paaC; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC [EC:1.14.13.149]
D XBJ1_0124 paaD; putative subunit of multicomponent oxygenase, phenylacetic acid degradation K02612 paaD; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD
D XBJ1_0123 paaE; putative phenylacetic acid degradation protein with NADP-linked, 2Fe-2S ferredoxin-like and riboflavin synthase-like domains K02613 paaE; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE
D XBJ1_0121 paaG; acyl-CoA hydratase, phenylacetic acid degradation (strain W) K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
D XBJ1_0128 maoC; putative aldehyde dehydrogenase, phenylacetic acid degradation K02618 paaZ; oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase [EC:3.3.2.12 1.2.1.91]
D XBJ1_0118 paaJ; putative beta-ketoadipyl CoA thiolase with thiolase-like domain, phenylacetic acid degradation K02615 paaJ; 3-oxo-5,6-didehydrosuberyl-CoA/3-oxoadipyl-CoA thiolase [EC:2.3.1.223 2.3.1.174]
D XBJ1_0122 paaF; enoyl-CoA hydratase-isomerase, phenylacetic acid degradation (strain W) K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D XBJ1_0120 paaH; 3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D XBJ1_2687 putative 3-hydroxybutyryl-CoA dehydrogenase (Beta-hydroxybutyryl-CoA dehydrogenase) (BHBD) K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D XBJ1_0796 aspC; aspartate aminotransferase, PLP-dependent K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D XBJ1_0918 hisC; histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D XBJ1_3911 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D XBJ1_2774 yhhY; putative acyltransferase K03825 aaaT; L-phenylalanine/L-methionine N-acetyltransferase [EC:2.3.1.53 2.3.1.-]
D XBJ1_2456 dadA; D-amino acid dehydrogenase subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
C 00380 Tryptophan metabolism [PATH:xbo00380]
D XBJ1_1056 sucB; dihydrolipoyltranssuccinate transferase, component of the 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D XBJ1_3453 lpd; dihydrolipoamide dehydrogenase, FAD/NAD(P)-binding, component of the 2-oxoglutarate dehydrogenase and the pyruvate dehydrogenase complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D XBJ1_0122 paaF; enoyl-CoA hydratase-isomerase, phenylacetic acid degradation (strain W) K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D XBJ1_0517 fadB; multifunctional: 3-hydroxybutyryl-CoA epimerase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, enoyl-CoA hydratase (N-terminal); 3-hydroxyacyl-CoA dehydrogenase (C-terminal) K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D XBJ1_2992 fadJ; bifunctional anaerobic fatty acid oxidation complex protein: enoyl-CoA hydratase/epimerase/isomerase (N-terminal); 3-hydroxyacyl-CoA dehydrogenase (C-terminal) K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D XBJ1_3649 aldB; aldehyde dehydrogenase B (lactaldehyde dehydrogenase) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:xbo00400]
D XBJ1_2512 aroH; 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase), tryptophan-repressible K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D XBJ1_1039 aroG; 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase, phenylalanine-repressible) K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D XBJ1_3264 aroF; 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase), tyrosine-repressible K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D XBJ1_0057 aroB; dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D XBJ1_3799 aroQ; 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D XBJ1_4206 aroE; dehydroshikimate reductase, NAD(P)-binding K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D XBJ1_0058 aroK; shikimate kinase I K00891 aroK; shikimate kinase [EC:2.7.1.71]
D XBJ1_3294 aroL; shikimate kinase II K00891 aroK; shikimate kinase [EC:2.7.1.71]
D XBJ1_1759 putative 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D XBJ1_0816 aroA; 3-enolpyruvylshikimate-5-phosphate synthetase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D XBJ1_3776 putative 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D XBJ1_3774 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) (fragment) K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D XBJ1_2981 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D XBJ1_0410 Anthranilate synthase component 1 (Anthranilate synthase component I) K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D XBJ1_2279 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D XBJ1_2278 Anthranilate synthase component II (Glutamine amido-transferase) K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D XBJ1_0409 pabA; aminodeoxychorismate synthase subunit II, component of p-aminobenzoate synthase multienzyme complex K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D XBJ1_2277 trpD; anthranilate phosphoribosyltransferase K13497 trpGD; anthranilate synthase/phosphoribosyltransferase [EC:4.1.3.27 2.4.2.18]
D XBJ1_2276 trpC; bifunctional: indole-3-glycerolphosphate synthetase (N-terminal); N-(5-phosphoribosyl)anthranilate isomerase (C-terminal) K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24]
D XBJ1_2274 trpA; tryptophan synthase, alpha protein K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D XBJ1_2275 trpB; tryptophan synthase, beta protein K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D XBJ1_3263 tyrA; bifunctional: chorismate mutase T (N-terminal); prephenate dehydrogenase (C-terminal) K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D XBJ1_2804 putative Monofunctional chorismate mutase precursor (CM-F) K04093 pheA1; chorismate mutase [EC:5.4.99.5]
D XBJ1_3262 pheA; bifunctional: chorismate mutase P (N-terminal); prephenate dehydratase (C-terminal) K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D XBJ1_0796 aspC; aspartate aminotransferase, PLP-dependent K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D XBJ1_0918 hisC; histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D XBJ1_3911 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:xbo00410]
D XBJ1_3678 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D XBJ1_0083 goaG; 4-aminobutyrate aminotransferase, PLP-dependent K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D XBJ1_3649 aldB; aldehyde dehydrogenase B (lactaldehyde dehydrogenase) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D XBJ1_3673 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D XBJ1_0122 paaF; enoyl-CoA hydratase-isomerase, phenylacetic acid degradation (strain W) K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D XBJ1_0517 fadB; multifunctional: 3-hydroxybutyryl-CoA epimerase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, enoyl-CoA hydratase (N-terminal); 3-hydroxyacyl-CoA dehydrogenase (C-terminal) K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D XBJ1_2992 fadJ; bifunctional anaerobic fatty acid oxidation complex protein: enoyl-CoA hydratase/epimerase/isomerase (N-terminal); 3-hydroxyacyl-CoA dehydrogenase (C-terminal) K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00430 Taurine and hypotaurine metabolism [PATH:xbo00430]
D XBJ1_1684 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D XBJ1_2935 pta; phosphotransacetylase (phosphate acetyltransferase) K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D XBJ1_2934 ackA; acetate kinase A (propionate kinase 2) K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:xbo00450]
D XBJ1_4277 metB; cystathionine gamma-synthase, PLP-dependent K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D XBJ1_1716 metC; cystathionine beta-lyase, PLP-dependent (beta-cystathionase) K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D XBJ1_0499 metE; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D XBJ1_3500 metB; cystathionine gamma-synthase, PLP-dependent K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D XBJ1_0892 trxB; thioredoxin reductase, FAD/NAD(P)-binding K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D XBJ1_3607 cysN; ATP-sulfurylase, subunit 1 (ATP:sulfate adenylyltransferase) K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D XBJ1_3608 cysD; ATP-sulfurylase, subunit 2 (ATP:sulfate adenylyltransferase) K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D XBJ1_0935 metG; methionine tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:xbo00460]
D XBJ1_1684 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D XBJ1_2448 ansA; cytoplasmic L-asparaginase I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D XBJ1_0818 ansB; periplasmic L-asparaginase II K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D XBJ1_0034 asnA; asparagine synthetase A K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D XBJ1_3033 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:xbo00470]
D XBJ1_2455 dadX; alanine racemase 2, PLP-binding, catabolic K01775 alr; alanine racemase [EC:5.1.1.1]
D XBJ1_3912 alr; alanine racemase 1, PLP-binding, biosynthetic K01775 alr; alanine racemase [EC:5.1.1.1]
D XBJ1_3474 ddlB; D-alanine-D-alanine ligase B, affects cell division K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D XBJ1_0109 putative D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D XBJ1_3817 Alanine racemase 2 K25317 alr; amino-acid racemase [EC:5.1.1.10]
D XBJ1_3349 yneH; putative glutaminase/carboxypeptidase K01425 glsA; glutaminase [EC:3.5.1.2]
D XBJ1_4259 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D XBJ1_3478 murD; UDP-N-acetylmuramoylalanine-D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D XBJ1_0108 putative aspartate/glutamate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D XBJ1_4155 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D XBJ1_3331 lysA; diaminopimelate decarboxylase, PLP-binding K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D XBJ1_2456 dadA; D-amino acid dehydrogenase subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
C 00480 Glutathione metabolism [PATH:xbo00480]
D XBJ1_1684 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D XBJ1_0530 ybgL; putative lactam utilization protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D XBJ1_3282 gshA; gamma-glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D XBJ1_3338 gshB; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D XBJ1_0447 pepA; aminopeptidase A, a cyteinylglycinase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D XBJ1_3021 pepB; aminopeptidase B, a cysteinylglycinase K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D XBJ1_0791 pepN; aminopeptidase N, a cysteinylglycinase K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D XBJ1_3301 pepD; aminopeptidase D (aminoacyl-histidine dipeptidase) K01270 pepD; dipeptidase D [EC:3.4.13.-]
D XBJ1_0913 yliJ; putative glutathione S-transferase with thioredoxin-like domain and glutathione S-transferase, C-terminal domain K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D XBJ1_1348 putative glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D XBJ1_4111 gor; glutathione oxidoreductase, nucleotide-binding K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D XBJ1_2828 icd; e14 prophage; isocitrate dehydrogenase, specific for NADP+ K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D XBJ1_0927 gnd; gluconate-6-phosphate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D XBJ1_2233 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:xbo00511]
D XBJ1_1109 Chitobiase (Precursor) K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00540 Lipopolysaccharide biosynthesis [PATH:xbo00540]
D XBJ1_0601 lpxA; UDP-N-acetylglucosamine acetyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D XBJ1_3470 lpxC; UDP-3-O-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D XBJ1_0599 lpxD; UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D XBJ1_3095 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D XBJ1_0602 lpxB; tetraacyldisaccharide-1-P synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D XBJ1_0809 lpxK; tetraacyldisaccharide 4' kinase (lipid A 4'kinase) K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D XBJ1_3828 yrbH; putative isomerase with phosphosugar-binding domain K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D XBJ1_2205 kdsA; 3-deoxy-D-manno-octulosonic acid 8-P synthetase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D XBJ1_3827 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, KDO biosynthesis (E. coli B strain) K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D XBJ1_0807 kdsB; CTP:CMP-3-deoxy-D-manno-octulosonate transferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D XBJ1_4349 waaA; 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D XBJ1_1895 lpxL; lauroyl transferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D XBJ1_2230 lpxM; myristoyl transferase in lipid A biosynthesis, suppressor of htrB (lpxL) K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D XBJ1_2892 yeiU; putative phosphatase K19803 lpxT; Kdo2-lipid A phosphotransferase [EC:2.7.4.29]
D XBJ1_2532 arnT; 4-amino-4-deoxy-L-arabinose transferase (lipid A modification) K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43]
D XBJ1_3329 lpcA; D-sedoheptulose 7-phosphate isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D XBJ1_1822 rfaE; putative bifunctional ADP-L-glycero-D-manno-heptose synthase: putaive kinase (N-terminal); sugar nucleotide transferase (C-terminal) K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D XBJ1_0626 gmhB; D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D XBJ1_4338 rfaD; ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D XBJ1_4340 rfaC; ADP-heptose; LPS heptosyl transferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D XBJ1_4339 rfaF; ADP-heptose; LPS heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D XBJ1_4346 rfaQ; lipopolysaccharide core biosynthesis; modification of heptose region of core K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D XBJ1_4347 Lipopolysaccharide core biosynthesis protein RfaG (Glucosyltransferase I) K02844 waaG; UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-]
D XBJ1_4353 O-antigen ligase K02847 waaL; O-antigen ligase [EC:2.4.99.26]
C 00542 O-Antigen repeat unit biosynthesis [PATH:xbo00542]
D XBJ1_4178 rfe; UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:xbo00541]
D XBJ1_2435 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D XBJ1_3506 galE; UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D XBJ1_4328 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D XBJ1_2434 putative UDP-glucose 6-dehydrogenase (Ugd) (Udg) K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D XBJ1_2433 putative epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D XBJ1_4173 rffH; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D XBJ1_4174 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D XBJ1_4171 rffA; TDP-4-oxo-6-deoxy-D-glucose transaminase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
D XBJ1_4172 rffC; putative acyl-CoA N-acyltransferase, lipopolysaccharide biosynthesis protein K16704 rffC; dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase [EC:2.3.1.210]
D XBJ1_2315 manA; mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D XBJ1_0020 glmU; bifunctional: N-acetyl glucosamine-1-phosphate uridyltransferase (N-terminal); glucosamine-1-phosphate acetyl transferase (C-terminal) K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D XBJ1_4176 rffE; UDP-N-acetyl glucosamine-2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D XBJ1_4175 rffD; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D XBJ1_4313 UDP-glucose 6-dehydrogenase K13015 wbpA; UDP-N-acetyl-D-glucosamine dehydrogenase [EC:1.1.1.136]
D XBJ1_4314 Inositol 2-dehydrogenase K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335]
D XBJ1_4316 Glutamine--scyllo-inositol transaminase K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D XBJ1_4315 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K13018 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase [EC:2.3.1.201]
C 00550 Peptidoglycan biosynthesis [PATH:xbo00550]
D XBJ1_3836 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D XBJ1_4253 murB; UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D XBJ1_3475 murC; UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D XBJ1_3478 murD; UDP-N-acetylmuramoylalanine-D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D XBJ1_3481 murE; UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D XBJ1_3474 ddlB; D-alanine-D-alanine ligase B, affects cell division K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D XBJ1_0109 putative D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D XBJ1_3480 murF; D-alanine:D-alanine-adding enzyme K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D XBJ1_0594 ispU; undecaprenyl pyrophosphate synthetase (di-trans,poly-cis-decaprenylcistransferase) K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D XBJ1_0910 ybjG; putative phosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D XBJ1_3479 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D XBJ1_3476 murG; UDP-N-acetylglucosamine:N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D XBJ1_3856 mtgA; peptidoglycan transglycosylase, biosynthetic K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D XBJ1_0065 mrcA; bifunctional penicillin-binding protein 1a: transglycosylase (N-terminal); transpeptidase (C-terminal) K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D XBJ1_3664 mrcB; bifunctional penicillin-binding protein 1b: glycosyl transferase (N-terminal); transpeptidase (C-terminal) K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D XBJ1_3018 pbpC; transglycosylase of penicillin-binding protein 1c K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D XBJ1_3212 mrdA; cell elongation-specific transpeptidase of penicillin-binding protein 2 (peptidoglycan synthetase) K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D XBJ1_3482 ftsI; division-specific transpeptidase, penicillin-binding protein 3 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D XBJ1_0912 dacC; D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D XBJ1_3215 dacA; D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D XBJ1_0358 dacB; D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 4 K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:xbo00552]
D XBJ1_0910 ybjG; putative phosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D XBJ1_4178 rfe; UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:xbo00543]
D XBJ1_4178 rfe; UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D XBJ1_4167 rffM; putative UDP-N-acetyl-D-mannosaminuronic acid transferase, with FMN-linked oxidoreductase domain K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180]
D XBJ1_4169 rffT; TDP-Fuc4NAc:lipid II transferase K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325]
D XBJ1_4330 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:xbo00730]
D XBJ1_4028 thiC; 5'-phosphoryl-5-aminoimidazole = 4-amino-5-hydroxymethyl-2-methylpyrimidine-P K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D XBJ1_2739 thiD; bifunctional: hydroxy-methylpyrimidine kinase (HMP kinase); hydroxy-phosphomethylpyrimidine kinase (HMP-P kinase) K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D XBJ1_4030 thiF; adenylation of ThiS; with ThiI, thiolation of ThiS; in thiazole synthesis K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
D XBJ1_3028 iscS; cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D XBJ1_1656 thiI; sulfur transfer protein (from cys to ThiS and from IscS to U8-tRNA) K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D XBJ1_4033 thiH; thiamin biosynthesis enzyme subunit, with ThiG K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D XBJ1_1132 fms14; formimidoyl fortimicin A synthetase K03153 thiO; glycine oxidase [EC:1.4.3.19]
D XBJ1_1659 dxs; 1-deoxy-D-xylulose 5-phosphate synthase; flavoprotein, thiamin-binding K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D XBJ1_4032 thiG; thiamin biosynthesis enzyme subunit, with ThiH K03149 thiG; thiazole synthase [EC:2.8.1.10]
D XBJ1_4029 thiE; thiamin phosphate synthase (thiamin phosphate pyrophosphorylase) K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D XBJ1_1669 thiL; thiamin-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D XBJ1_4131 yjeQ; putative enzyme with 2 nucleoside triP hydrolase domains K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D XBJ1_2847 putative Thiamine kinase K07251 thiK; thiamine kinase [EC:2.7.1.89]
D XBJ1_1605 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:xbo00740]
D XBJ1_2296 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D XBJ1_1672 ribD; bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D XBJ1_4152 yigB; putative enzyme with a phosphatase-like domain K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104]
D XBJ1_1819 ribB; 3,4 dihydroxy-2-butanone-4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12]
D XBJ1_1671 ribE; riboflavin synthase, beta chain K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D XBJ1_2501 ribC; riboflavin synthase, alpha chain K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D XBJ1_1727 ribF; bifunctional: flavokinase; FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D XBJ1_0800 aphA; non-specific acid phosphatase/phosphotransferase, class B K03788 aphA; acid phosphatase (class B) [EC:3.1.3.2]
D XBJ1_3599 ycdH; putative oxidoreductase component with FMN-binding split barrel domain K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36]
D XBJ1_0515 fre; flavin reductase, FAD = preferred substrate K05368 fre; NAD(P)H-flavin reductase [EC:1.5.1.41]
D XBJ1_1813 nudF; adenosine diphosphate sugar pyrophosphatase (ADP-ribose pyrophosphatase) K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D XBJ1_2830 ymfB; putative hydrolase (Nudix family) K12152 nudJ; phosphatase NudJ [EC:3.6.1.-]
D XBJ1_2958 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:xbo00750]
D XBJ1_2487 pdxH; pyridoxine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D XBJ1_2484 pdxY; pyridoxal kinase 2/pyridoxine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D XBJ1_3081 epd; D-erythrose 4-phosphate dehydrogenase K03472 epd; D-erythrose 4-phosphate dehydrogenase [EC:1.2.1.72]
D XBJ1_2967 pdxB; erythronate-4-phosphate dehydrogenase K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290]
D XBJ1_0817 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D XBJ1_1801 pdxA; NAD-dependent dehydrogenase/carboxylase, pyridoxine phosphate biosynthetic protein PdxJ-PdxA subunit K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D XBJ1_3145 pdxJ; carries out condensation and ring closure step after PdxA in pyridoxine biosynthesis K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D XBJ1_3513 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:xbo00760]
D XBJ1_0792 pncB; nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D XBJ1_3539 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D XBJ1_3527 nadR; transcriptional regulator of NAD biosynthesis; regulator of PnuC activity; NMN adenylyltransferase K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D XBJ1_1598 ushA; bifunctional: UDP-sugar hydrolase; 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D XBJ1_3584 surE; survival protein, protein damage control K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D XBJ1_3209 nadD; nicotinic acid mononucleotide adenylyltransferase, NAD(P)-requiring K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D XBJ1_3653 Protein mazG K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D XBJ1_4025 NADH pyrophosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D XBJ1_3036 putative glutamine-dependent NAD(+) synthetase (NAD(+) synthase [glutamine-hydrolyzing]) (NadE) K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D XBJ1_3288 17.2 kDa protein 1 in recA 5'region K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D XBJ1_2449 pncA; nicotinamidase/pyrazinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D XBJ1_2838 cobB; putative enzyme with DHS-like NAD/FAD-binding domain K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D XBJ1_3160 nadK; NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D XBJ1_4265 sthA; soluble pyridine nucleotide transhydrogenase K00322 sthA; NAD(P) transhydrogenase [EC:1.6.1.1]
D XBJ1_2357 pntA; pyridine nucleotide transhydrogenase (proton pump), alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D XBJ1_2356 pntB; pyridine nucleotide transhydrogenase (proton pump), beta subunit K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D XBJ1_0871 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:xbo00770]
D XBJ1_3488 ilvI; acetolactate synthase III, valine-sensitive, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D XBJ1_4195 ilvI; acetolactate synthase III, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D XBJ1_3901 putative Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D XBJ1_3487 ilvH; acetolactate synthase III, valine-sensitive, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D XBJ1_4194 ilvM; acetolactate synthase II, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D XBJ1_4189 ilvC; ketol-acid reductoisomerase, NAD(P)-binding K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D XBJ1_4192 ilvD; dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D XBJ1_3672 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D XBJ1_1654 panE; 2-dehydropantoate reductase, NADPH-specific, alternative pyrimidine biosynthesis K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D XBJ1_3673 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D XBJ1_4251 coaA; pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D XBJ1_4362 dfp; bifunctional: 4'-phosphopantothenoylcysteine decarboxylase; phosphopantothenoylcysteine synthetase, FMN-binding K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D XBJ1_3653 Protein mazG K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D XBJ1_4351 coaD; CMP-deoxy-D-manno-octulosonate-lipid A transferase (phosphopantetheine adenylyltransferase) K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D XBJ1_3462 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D XBJ1_1681 Acyl carrier protein phosphodiesterase (ACP phosphodiesterase) K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14]
D XBJ1_4193 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D XBJ1_3678 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D XBJ1_3649 aldB; aldehyde dehydrogenase B (lactaldehyde dehydrogenase) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00780 Biotin metabolism [PATH:xbo00780]
D XBJ1_1023 bioC; biotin biosynthesis; reaction prior to pimeloyl CoA K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D XBJ1_2975 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D XBJ1_2855 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D XBJ1_1403 3-ketoacyl-CoA reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D XBJ1_2859 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D XBJ1_2950 3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D XBJ1_0600 fabZ; (3R)-hydroxymyristol acyl carrier protein dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D XBJ1_2481 fabI; enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D XBJ1_0145 bioH; putative enzyme in pimeloyl-CoA (biotin precursor) synthesis with alpha/beta-hydrolase domain K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D XBJ1_1024 bioF; 7-keto-8-aminopelargonic acid synthetase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D XBJ1_1026 bioA; 7,8-diaminopelargonic acid synthetase, PLP-dependent K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D XBJ1_2322 ynfK; putative dethiobiotin synthetase with nucleotide triphosphate hydrolase domain K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D XBJ1_1022 bioD; dethiobiotin synthetase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D XBJ1_1025 bioB; biotin synthetase K01012 bioB; biotin synthase [EC:2.8.1.6]
D XBJ1_4252 birA; bifunctional: biotin-[acetylCoA carboxylase] holoenzyme synthetase; transcriptional repressor of biotin synthesis (BirA family) K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:xbo00785]
D XBJ1_3218 lipB; lipoyl(octanyl)-acyl carrier protein: protein transferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D XBJ1_3219 lipA; lipoate protein ligase, an iron-sulfur enzyme K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D XBJ1_2522 lplA; lipoate-protein ligase A K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D XBJ1_3453 lpd; dihydrolipoamide dehydrogenase, FAD/NAD(P)-binding, component of the 2-oxoglutarate dehydrogenase and the pyruvate dehydrogenase complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D XBJ1_3455 aceE; pyruvate dehydrogenase, decarboxylase subunit, thiamin-binding K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D XBJ1_3454 aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase subunit K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D XBJ1_1057 sucA; 2-oxoglutarate decarboxylase, component of the 2-oxoglutarate dehydrogenase complex, thiamin-binding K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D XBJ1_1056 sucB; dihydrolipoyltranssuccinate transferase, component of the 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D XBJ1_3434 gcvP; glycine cleavage complex protein P, glycine decarboxylase, PLP-dependent K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D XBJ1_3436 gcvT; glycine cleavage complex protein T, aminomethyltransferase, tetrahydrofolate-dependent K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D XBJ1_3435 gcvH; glycine cleavage complex protein H, carrier of aminomethyl moiety via covalently bound lipoyl cofactor K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:xbo00790]
D XBJ1_0944 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D XBJ1_2263 nudB; dATP pyrophosphohydrolase, MutT-like K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67]
D XBJ1_1828 folB; dihydroneopterin aldolase, also has dihydroneopterin triphosphate 2'-epimerase activity K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D XBJ1_3670 folK; 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D XBJ1_0363 folP; 7,8-dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D XBJ1_1805 folA; dihydrofolate reductase type I, trimethoprim resistance K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D XBJ1_2962 folC; bifunctional: folylpolyglutamate synthase; dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D XBJ1_2296 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D XBJ1_4090 pabA; aminodeoxychorismate synthase subunit II, component of p-aminobenzoate synthase multienzyme complex K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D XBJ1_2562 pabB; aminodeoxychorismate synthase subunit I, component of p-aminobenzoate synthase multienzyme complex K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D XBJ1_2854 pabC; 4-amino-4-deoxychorismate lyase (aminotransferase), component of p-aminobenzoate synthase multienzyme complex K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D XBJ1_3613 sscR; putative synthase with tetrahydrobiopterin biosynthesis-like domain K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D XBJ1_3614 ygcF; putative coenzyme PQQ synthesis protein with nitrogenase iron-molybdenum domain K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D XBJ1_1630 ybaX; putative (aluminum) resistance protein with adenine nucleotide alpha hydrolase domain K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D XBJ1_0578 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D XBJ1_3335 conserved hypothetical protein K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105]
D XBJ1_0979 moaA; molybdopterin biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D XBJ1_0978 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D XBJ1_0976 moaE; molybdopterin converting factor, subunit 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D XBJ1_3510 mog; putative molybdochetalase in molybdopterine biosynthesis, metal incorporation step K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D XBJ1_0947 moeA; molybdopterin biosynthesis protein, molybdenum incorporation step K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D XBJ1_4099 mobA; molybdopterin-guanine dinucleotide synthase K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:xbo00670]
D XBJ1_1805 folA; dihydrofolate reductase type I, trimethoprim resistance K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D XBJ1_1158 folD; bifunctional enzyme: 5,10-methylene-tetrahydrofolate dehydrogenase; 5,10-methylene-tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D XBJ1_3033 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D XBJ1_2072 purN; phosphoribosylglycinamide formyltransferase 1 K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D XBJ1_4018 purH; bifunctional: IMP cyclohydrolase (N-terminal); phosphoribosylaminoimidazolecarboxamide formyltransferase (C-terminal) K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D XBJ1_4211 fmt; 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D XBJ1_3436 gcvT; glycine cleavage complex protein T, aminomethyltransferase, tetrahydrofolate-dependent K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D XBJ1_3691 thyA; thymidylate synthetase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D XBJ1_2438 purU; formyltetrahydrofolate hydrolase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D XBJ1_4273 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D XBJ1_3443 ygfA; putative ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:xbo00860]
D XBJ1_3116 gltX; glutamate tRNA synthetase, catalytic subunit K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D XBJ1_2201 hemA; glutamyl tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D XBJ1_3661 hemL; glutamate-1-semialdehyde aminotransferase (aminomutase), PLP-dependent K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D XBJ1_0512 hemB; 5-aminolevulinate dehydratase (porphobilinogen synthase) K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D XBJ1_4160 hemC; hydroxymethylbilane synthase (porphobilinogen deaminase) K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D XBJ1_4161 hemD; uroporphyrinogen III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D XBJ1_4024 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D XBJ1_3000 hemF; coproporphyrinogen III oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D XBJ1_0208 hemN; coproporphyrinogen III oxidase, O2-independent, SAM and NAD(P)H dependent K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D XBJ1_0522 hemG; protoporphyrin flavoprotein oxidase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D XBJ1_1604 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D XBJ1_4162 hemX; uroporphyrinogen III methylase K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D XBJ1_3609 cysG; multifunctional siroheme synthase: uroporphyrinogen methyltransferase; 1,3-dimethyluroporphyriongen III dehydrogenase; siroheme ferrochelatase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D XBJ1_0853 Uroporphyrin-III C-methyltransferase (Urogen III methylase) (SUMT) (Uroporphyrinogen III methylase) (UROM) K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D XBJ1_1650 cyoE; protoheme IX farnesyltransferase (heme O biosynthesis) K02257 COX10; heme o synthase [EC:2.5.1.141]
D XBJ1_0842 Sirohydrochlorin cobaltochelatase K02190 cbiK; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D XBJ1_0841 Cobalt-precorrin-2 C(20)-methyltransferase (S-adenosyl-L-methionine--cobalt-precorrin-2 methyltransferase) K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151]
D XBJ1_0844 Cobalt-precorrin-3B C(17)-methyltransferase (Cobalt-precorrin-3 methyltransferase) (Cobalt-precorrin-3 methylase) K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272]
D XBJ1_0846 Cobalt-precorrin-4 C(11)-methyltransferase (Cobalt-precorrin-3 methylase) K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271]
D XBJ1_0845 Protein cbiG K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12]
D XBJ1_0843 Cobalt-precorrin-6A reductase K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106]
D XBJ1_0849 putative cobalt-precorrin-6A synthase [deacetylating] K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195]
D XBJ1_0847 putative cobalt-precorrin-6Y C(15)-methyltransferase [decarboxylating] K02191 cbiT; cobalt-precorrin-6B (C15)-methyltransferase [EC:2.1.1.196]
D XBJ1_0848 putative cobalt-precorrin-6Y C(5)-methyltransferase (Cobalt-precorrin-6 methyltransferase) (Cobalt-precorrin-6Y methylase) K03399 cbiE; cobalt-precorrin-7 (C5)-methyltransferase [EC:2.1.1.289]
D XBJ1_0850 Cobalt-precorrin-8X methylmutase (Cobalt-precorrin isomerase) (HBA synthase) K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60]
D XBJ1_0852 Cobyrinic acid A,C-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D XBJ1_2283 btuR; cob(I)alamin and cobinamide ATP-dependent adenolsyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D XBJ1_0836 Cobyric acid synthase K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D XBJ1_0851 Cobalamin biosynthesis protein cbiB K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D XBJ1_0835 cobU; bifunctional: cobinamide kinase; cobinamide phosphate guanylyltransferase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D XBJ1_0834 cobS; cobalamin 5'-phosphate synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D XBJ1_0833 cobT; nicotinate-nucleotide dimethylbenzimidazole-P phophoribosyl transferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D XBJ1_0855 conserved hypothetical protein K16651 pduX; L-threonine kinase [EC:2.7.1.177]
D XBJ1_0854 Threonine-phosphate decarboxylase (L-threonine-O-3-phosphate decarboxylase) K04720 cobD; threonine-phosphate decarboxylase [EC:4.1.1.81]
D XBJ1_4243 bfr; bacterioferritin, an iron storage homoprotein K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:xbo00130]
D XBJ1_4001 ubiC; chorismate pyruvate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40]
D XBJ1_4000 ubiA; p-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D XBJ1_0514 ubiD; 3-octaprenyl-4-hydroxybenzoate decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D XBJ1_2958 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D XBJ1_3437 visC; putative monooxygenase, FAD/NAD(P)-binding domain K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D XBJ1_0729 ubiG; bifunctional: 3-demethylubiquinone-9 3-methyltransferase; 2-octaprenyl-6-hydroxy phenol methylase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D XBJ1_3438 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase, FAD/NAD(P)-binding K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D XBJ1_0506 ubiE; bifunctional: 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase; S-adenosylmethionine:2-DMK methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D XBJ1_3196 ubiF; 2-octoprenyl-3-methyl-6-methoxy-1,4-benzoquinone hydroxylase K03184 ubiF; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D XBJ1_1437 entC; isochorismate synthetase, enterobactin-specific K02361 entC; isochorismate synthase [EC:5.4.4.2]
D XBJ1_2610 Putative isochorismate synthase PhbC (modular protein) K02361 entC; isochorismate synthase [EC:5.4.4.2]
D XBJ1_0740 menD; bifunctional: 2-oxoglutarate decarboxylase; SHCHC synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D XBJ1_0739 yfbB; putative enzyme with alpha/beta-hydrolase domain K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20]
D XBJ1_0737 menC; o-succinylbenzoyl-CoA synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D XBJ1_0736 menE; o-succinylbenzoate-CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D XBJ1_0738 menB; dihydroxynaphthoic acid synthetase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D XBJ1_2507 Esterase ydiI K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D XBJ1_4286 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D XBJ1_3743 putative NAD(P)H oxidoreductase K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:xbo00900]
D XBJ1_1659 dxs; 1-deoxy-D-xylulose 5-phosphate synthase; flavoprotein, thiamin-binding K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D XBJ1_0593 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D XBJ1_3603 ispD; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D XBJ1_2199 ispE; 4-diphosphocytidyl-2C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D XBJ1_3602 ispF; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D XBJ1_3007 ispG; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D XBJ1_1723 ispH; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase, 4Fe-4S protein K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D XBJ1_2958 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D XBJ1_1658 ispA; geranyltranstransferase (=farnesyldiphosphate synthase) K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D XBJ1_0353 ispB; octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D XBJ1_0594 ispU; undecaprenyl pyrophosphate synthetase (di-trans,poly-cis-decaprenylcistransferase) K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
D XBJ1_3649 aldB; aldehyde dehydrogenase B (lactaldehyde dehydrogenase) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00907 Pinene, camphor and geraniol degradation [PATH:xbo00907]
D XBJ1_0122 paaF; enoyl-CoA hydratase-isomerase, phenylacetic acid degradation (strain W) K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D XBJ1_0517 fadB; multifunctional: 3-hydroxybutyryl-CoA epimerase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, enoyl-CoA hydratase (N-terminal); 3-hydroxyacyl-CoA dehydrogenase (C-terminal) K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D XBJ1_2992 fadJ; bifunctional anaerobic fatty acid oxidation complex protein: enoyl-CoA hydratase/epimerase/isomerase (N-terminal); 3-hydroxyacyl-CoA dehydrogenase (C-terminal) K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D XBJ1_0516 fadA; 3-ketoacyl-CoA thiolase; (thiolase I, acetyl-CoA transferase), in complex with FadB catalyzes K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D XBJ1_2993 fadI; beta-keto thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D XBJ1_3080 tktA; transketolase 1 thiamin-binding, isozyme K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:xbo00523]
D XBJ1_4173 rffH; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D XBJ1_4174 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 01054 Nonribosomal peptide structures [PATH:xbo01054]
D XBJ1_0108 putative aspartate/glutamate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01053 Biosynthesis of siderophore group nonribosomal peptides [PATH:xbo01053]
D XBJ1_1437 entC; isochorismate synthetase, enterobactin-specific K02361 entC; isochorismate synthase [EC:5.4.4.2]
D XBJ1_2610 Putative isochorismate synthase PhbC (modular protein) K02361 entC; isochorismate synthase [EC:5.4.4.2]
D XBJ1_1435 entB; 2,3-dihydro-2,3-dihydroxybenzoate synthetase (isochorismatase) (N-terminal); aryl carrier protein (C-terminal) (enterobactin synthase multienzyme complex component) K01252 entB; bifunctional isochorismate lyase / aryl carrier protein [EC:3.3.2.1 6.3.2.14]
D XBJ1_2612 entB; 2,3-dihydro-2,3-dihydroxybenzoate synthetase (isochorismatase) (N-terminal); aryl carrier protein (C-terminal) (enterobactin synthase multienzyme complex component) K01252 entB; bifunctional isochorismate lyase / aryl carrier protein [EC:3.3.2.1 6.3.2.14]
D XBJ1_2613 entA; 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase K00216 entA; 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase [EC:1.3.1.28]
D XBJ1_3508 NrgA K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-]
D XBJ1_2611 entE; 2,3-dihydroxybenzoate-AMP ligase, component of the enterobactin synthase multienzyme complex K02363 entE; 2,3-dihydroxybenzoate---[aryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.71]
C 01055 Biosynthesis of vancomycin group antibiotics
D XBJ1_4174 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
D XBJ1_2301 Beta-lactamase (Penicillinase) [Contains: Beta-lactamase form I; Beta-lactamase form II] K17836 penP; beta-lactamase class A [EC:3.5.2.6]
C 00332 Carbapenem biosynthesis [PATH:xbo00332]
D XBJ1_3296 proB; gamma-glutamate kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D XBJ1_3295 proA; gamma-glutamylphosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:xbo00261]
D XBJ1_3607 cysN; ATP-sulfurylase, subunit 1 (ATP:sulfate adenylyltransferase) K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D XBJ1_3608 cysD; ATP-sulfurylase, subunit 2 (ATP:sulfate adenylyltransferase) K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D XBJ1_4003 lysC; aspartokinase III, lysine sensitive K00928 lysC; aspartate kinase [EC:2.7.2.4]
D XBJ1_3515 thrA; bifunctional: aspartokinase I (N-terminal); homoserine dehydrogenase I (C-terminal), threonine sensitive K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D XBJ1_4276 metL; bifunctional: aspartokinase II (N-terminal); homoserine dehydrogenase II (C-terminal), methionine sensitive K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D XBJ1_0008 asd; aspartate-semialdehyde dehydrogenase, NAD(P)-binding K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D XBJ1_2630 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D XBJ1_1722 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:xbo00521]
D XBJ1_1074 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D XBJ1_3031 suhB; inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D XBJ1_4173 rffH; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D XBJ1_4174 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis [PATH:xbo00525]
D XBJ1_4173 rffH; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D XBJ1_4174 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:xbo00401]
D XBJ1_3263 tyrA; bifunctional: chorismate mutase T (N-terminal); prephenate dehydrogenase (C-terminal) K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D XBJ1_0796 aspC; aspartate aminotransferase, PLP-dependent K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D XBJ1_0918 hisC; histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D XBJ1_3911 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D XBJ1_0410 Anthranilate synthase component 1 (Anthranilate synthase component I) K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D XBJ1_2279 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D XBJ1_2278 Anthranilate synthase component II (Glutamine amido-transferase) K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D XBJ1_0409 pabA; aminodeoxychorismate synthase subunit II, component of p-aminobenzoate synthase multienzyme complex K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D XBJ1_2860 fabD; malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D XBJ1_2696 putative [Acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D XBJ1_1403 3-ketoacyl-CoA reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D XBJ1_2859 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D XBJ1_2950 3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D XBJ1_2481 fabI; enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D XBJ1_2857 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:xbo00999]
D XBJ1_3643 metK; methionine adenosyltransferase 1 (AdoMet synthetase) K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D XBJ1_4206 aroE; dehydroshikimate reductase, NAD(P)-binding K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites [PATH:xbo00997]
D XBJ1_1355 Pyoverdine biosynthesis protein K22952 pvcA; L-tyrosine isonitrile synthase [EC:4.1.99.24]
D XBJ1_1354 Pyoverdine biosynthesis protein K22874 pvcB; L-tyrosine isonitrile desaturase/decarboxylase [EC:1.14.20.9 1.14.20.10]
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:xbo00362]
D XBJ1_0516 fadA; 3-ketoacyl-CoA thiolase; (thiolase I, acetyl-CoA transferase), in complex with FadB catalyzes K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D XBJ1_2993 fadI; beta-keto thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D XBJ1_0256 putative tautomerase K2 K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D XBJ1_2992 fadJ; bifunctional anaerobic fatty acid oxidation complex protein: enoyl-CoA hydratase/epimerase/isomerase (N-terminal); 3-hydroxyacyl-CoA dehydrogenase (C-terminal) K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D XBJ1_0517 fadB; multifunctional: 3-hydroxybutyryl-CoA epimerase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, enoyl-CoA hydratase (N-terminal); 3-hydroxyacyl-CoA dehydrogenase (C-terminal) K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D XBJ1_0122 paaF; enoyl-CoA hydratase-isomerase, phenylacetic acid degradation (strain W) K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D XBJ1_0120 paaH; 3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D XBJ1_2687 putative 3-hydroxybutyryl-CoA dehydrogenase (Beta-hydroxybutyryl-CoA dehydrogenase) (BHBD) K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
C 00627 Aminobenzoate degradation [PATH:xbo00627]
D XBJ1_0762 yccX; putative acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D XBJ1_2958 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D XBJ1_0122 paaF; enoyl-CoA hydratase-isomerase, phenylacetic acid degradation (strain W) K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:xbo00625]
D XBJ1_0925 yiaY; putative alcohol dehydrogenase with dehydroquinate synthase-like domain K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D XBJ1_3896 adhC; alcohol dehydrogenase class III K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D XBJ1_2430 adhE; multifunctional: acetaldehyde-CoA dehydrogenase (N-terminal); iron-dependent alcohol dehydrogenase (C-terminal); pyruvate-formate lyase deactivase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D XBJ1_3649 aldB; aldehyde dehydrogenase B (lactaldehyde dehydrogenase) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
D XBJ1_0256 putative tautomerase K2 K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
D XBJ1_0516 fadA; 3-ketoacyl-CoA thiolase; (thiolase I, acetyl-CoA transferase), in complex with FadB catalyzes K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D XBJ1_2993 fadI; beta-keto thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation
D XBJ1_3555 feaB; phenylacetaldehyde dehydrogenase K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39]
C 00791 Atrazine degradation
C 00930 Caprolactam degradation [PATH:xbo00930]
D XBJ1_0122 paaF; enoyl-CoA hydratase-isomerase, phenylacetic acid degradation (strain W) K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D XBJ1_0517 fadB; multifunctional: 3-hydroxybutyryl-CoA epimerase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, enoyl-CoA hydratase (N-terminal); 3-hydroxyacyl-CoA dehydrogenase (C-terminal) K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D XBJ1_2992 fadJ; bifunctional anaerobic fatty acid oxidation complex protein: enoyl-CoA hydratase/epimerase/isomerase (N-terminal); 3-hydroxyacyl-CoA dehydrogenase (C-terminal) K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
D XBJ1_0256 putative tautomerase K2 K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00626 Naphthalene degradation [PATH:xbo00626]
D XBJ1_0925 yiaY; putative alcohol dehydrogenase with dehydroquinate synthase-like domain K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D XBJ1_3896 adhC; alcohol dehydrogenase class III K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D XBJ1_2430 adhE; multifunctional: acetaldehyde-CoA dehydrogenase (N-terminal); iron-dependent alcohol dehydrogenase (C-terminal); pyruvate-formate lyase deactivase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:xbo03020]
D XBJ1_4054 rpoB; RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D XBJ1_4053 rpoC; RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D XBJ1_4217 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D XBJ1_0234 rpoZ; RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:xbo03010]
D XBJ1_0814 rpsA; 30S ribosomal subunit protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D XBJ1_0589 rpsB; 30S ribosomal subunit protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D XBJ1_4235 rpsC; 30S ribosomal subunit protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D XBJ1_4218 rpsD; 30S ribosomal subunit protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D XBJ1_4224 rpsE; 30S ribosomal subunit protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D XBJ1_0329 rpsF; 30S ribosomal subunit protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D XBJ1_4064 rpsG; 30S ribosomal subunit protein S7, initiates assembly K02992 RP-S7; small subunit ribosomal protein S7
D XBJ1_4227 rpsH; 30S ribosomal subunit protein S8, and regulator K02994 RP-S8; small subunit ribosomal protein S8
D XBJ1_3845 rpsI; 30S ribosomal subunit protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D XBJ1_4242 rpsJ; 30S ribosomal subunit protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D XBJ1_4219 rpsK; 30S ribosomal subunit protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D XBJ1_4065 rpsL; 30S ribosomal subunit protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D XBJ1_4220 rpsM; 30S ribosomal subunit protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D XBJ1_4228 rpsN; 30S ribosomal subunit protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D XBJ1_0371 rpsO; 30S ribosomal subunit protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D XBJ1_3269 rpsP; 30S ribosomal subunit protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D XBJ1_4232 rpsQ; 30S ribosomal subunit protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D XBJ1_0331 rpsR; 30S ribosomal subunit protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D XBJ1_4237 rpsS; 30S ribosomal subunit protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D XBJ1_1729 rpsT; 30S ribosomal subunit protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D XBJ1_1832 rpsU; 30S ribosomal subunit protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D XBJ1_4057 rplA; 50S ribosomal subunit protein L1, regulates synthesis of L1 and L11 K02863 RP-L1; large subunit ribosomal protein L1
D XBJ1_4238 rplB; 50S ribosomal subunit protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D XBJ1_4241 rplC; 50S ribosomal subunit protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D XBJ1_4240 rplD; 50S ribosomal subunit protein L4, regulates expression of S10 operon K02926 RP-L4; large subunit ribosomal protein L4
D XBJ1_4229 rplE; 50S ribosomal subunit protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D XBJ1_4226 rplF; 50S ribosomal subunit protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D XBJ1_4055 rplL; 50S ribosomal subunit protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D XBJ1_0332 rplI; 50S ribosomal subunit protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D XBJ1_4056 rplJ; 50S ribosomal subunit protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D XBJ1_4058 rplK; 50S ribosomal subunit protein L11, N-terminal believed to regulate RelA K02867 RP-L11; large subunit ribosomal protein L11
D XBJ1_3844 rplM; 50S ribosomal subunit protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D XBJ1_4231 rplN; 50S ribosomal subunit protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D XBJ1_4222 rplO; 50S ribosomal subunit protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D XBJ1_4234 rplP; 50S ribosomal subunit protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D XBJ1_4216 rplQ; 50S ribosomal subunit protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D XBJ1_4225 rplR; 50S ribosomal subunit protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D XBJ1_3266 rplS; 50S ribosomal subunit protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D XBJ1_2542 rplT; 50S ribosomal subunit protein L20, also posttranslational autoregulator K02887 RP-L20; large subunit ribosomal protein L20
D XBJ1_0355 rplU; 50S ribosomal subunit protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D XBJ1_4236 rplV; 50S ribosomal subunit protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D XBJ1_4239 rplW; 50S ribosomal subunit protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D XBJ1_4230 rplX; 50S ribosomal subunit protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D XBJ1_2898 rplY; 50S ribosomal subunit protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D XBJ1_0356 rpmA; 50S ribosomal subunit protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D XBJ1_4359 rpmB; 50S ribosomal subunit protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D XBJ1_4233 rpmC; 50S ribosomal subunit protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D XBJ1_4223 rpmD; 50S ribosomal subunit protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D XBJ1_4279 rpmE; 50S ribosomal subunit protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D XBJ1_2863 rpmF; 50S ribosomal subunit protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D XBJ1_4358 rpmG; 50S ribosomal subunit protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D XBJ1_4413 rpmH; 50S ribosomal subunit protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D XBJ1_2543 rpmI; 50S ribosomal subunit protein A K02916 RP-L35; large subunit ribosomal protein L35
D XBJ1_rRNA0029 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XBJ1_rRNA0005 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XBJ1_rRNA0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XBJ1_rRNA0009 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XBJ1_rRNA0024 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XBJ1_rRNA0020 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XBJ1_rRNA0016 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XBJ1_rRNA0007 LSU_RRNA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XBJ1_rRNA0018 LSU_RRNA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XBJ1_rRNA0022 LSU_RRNA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XBJ1_rRNA0011 LSU_RRNA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XBJ1_rRNA0027 LSU_RRNA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XBJ1_rRNA0003 LSU_RRNA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XBJ1_rRNA0014 LSU_RRNA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XBJ1_0047 5S ribosomal RNA protein K01985 5SrRNA; 5S ribosomal RNA
D XBJ1_4012 5S ribosomal RNA protein K01985 5SrRNA; 5S ribosomal RNA
D XBJ1_4255 5S ribosomal RNA protein K01985 5SrRNA; 5S ribosomal RNA
D XBJ1_4200 5S ribosomal RNA protein K01985 5SrRNA; 5S ribosomal RNA
D XBJ1_0527 5S ribosomal RNA protein K01985 5SrRNA; 5S ribosomal RNA
D XBJ1_0629 5S ribosomal RNA protein K01985 5SrRNA; 5S ribosomal RNA
D XBJ1_3254 5S ribosomal RNA protein K01985 5SrRNA; 5S ribosomal RNA
D XBJ1_4254 5S ribosomal RNA protein K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:xbo00970]
D XBJ1_tRNA0009 AlaTGC; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D XBJ1_tRNA0054 AlaTGC; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D XBJ1_tRNA0076 AlaTGC; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D XBJ1_tRNA0067 AlaTGC; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D XBJ1_tRNA0047 AlaGGC; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D XBJ1_tRNA0046 AlaGGC; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D XBJ1_tRNA0019 ArgTCT; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D XBJ1_tRNA0073 ArgCCG; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D XBJ1_tRNA0027 ArgCCT; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D XBJ1_tRNA0056 ArgACG; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D XBJ1_tRNA0057 ArgACG; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D XBJ1_tRNA0058 ArgACG; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D XBJ1_tRNA0024 AsnGTT; tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D XBJ1_tRNA0026 AsnGTT; tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D XBJ1_tRNA0025 AsnGTT; tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D XBJ1_tRNA0023 AsnGTT; tRNA-Val K14220 tRNA-Asn; tRNA Asn
D XBJ1_tRNA0011 AspGTC; tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D XBJ1_tRNA0075 AspGTC; tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D XBJ1_tRNA0038 AspGTC; tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D XBJ1_tRNA0035 CysGCA; tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D XBJ1_tRNA0053 GlnCTG; tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D XBJ1_tRNA0050 GlnTTG; tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D XBJ1_tRNA0051 GlnTTG; tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D XBJ1_tRNA0001 GluTTC; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D XBJ1_tRNA0010 GluTTC; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D XBJ1_tRNA0083 GluTTC; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D XBJ1_tRNA0079 GlyTCC; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D XBJ1_tRNA0036 GlyGCC; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D XBJ1_tRNA0069 GlyGCC; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D XBJ1_tRNA0003 GlyGCC; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D XBJ1_tRNA0004 GlyGCC; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D XBJ1_tRNA0018 PseudoGCC; tRNA-Val K14225 tRNA-Gly; tRNA Gly
D XBJ1_tRNA0072 HisGTG; tRNA-His K14226 tRNA-His; tRNA His
D XBJ1_tRNA0008 IleGAT; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D XBJ1_tRNA0055 IleGAT; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D XBJ1_tRNA0068 IleGAT; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D XBJ1_tRNA0077 IleGAT; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D XBJ1_tRNA0005 LeuGAG; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D XBJ1_tRNA0049 LeuTAG; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D XBJ1_tRNA0007 LeuCAA; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D XBJ1_tRNA0061 LeuCAG; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D XBJ1_tRNA0062 LeuCAG; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D XBJ1_tRNA0071 LeuCAG; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D XBJ1_tRNA0034 LeuTAA; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D XBJ1_tRNA0016 LysTTT; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D XBJ1_tRNA0042 LysTTT; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D XBJ1_tRNA0041 LysTTT; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D XBJ1_tRNA0040 LysTTT; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D XBJ1_tRNA0017 LysTTT; tRNA-OTHER K14229 tRNA-Lys; tRNA Lys
D XBJ1_tRNA0052 MetCAT; tRNA-Met K14230 tRNA-Met; tRNA Met
D XBJ1_tRNA0048 MetCAT; tRNA-Met K14230 tRNA-Met; tRNA Met
D XBJ1_tRNA0022 MetCAT; tRNA-Met K14230 tRNA-Met; tRNA Met
D XBJ1_tRNA0006 MetCAT; tRNA-Met K14230 tRNA-Met; tRNA Met
D XBJ1_tRNA0063 MetCAT; tRNA-Met K14230 tRNA-Met; tRNA Met
D XBJ1_tRNA0064 MetCAT; tRNA-Met K14230 tRNA-Met; tRNA Met
D XBJ1_tRNA0065 MetCAT; tRNA-Met K14230 tRNA-Met; tRNA Met
D XBJ1_tRNA0021 PheGAA; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D XBJ1_tRNA0060 PheGAA; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D XBJ1_tRNA0012 PheGAA; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D XBJ1_tRNA0020 PheGAA; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D XBJ1_tRNA0028 PheGAA; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D XBJ1_tRNA0066 PheGAA; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D XBJ1_tRNA0002 ProTGG; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D XBJ1_tRNA0070 ProTGG; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D XBJ1_tRNA0037 ProGGG; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D XBJ1_tRNA0013 SerTGA; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D XBJ1_tRNA0059 SerGCT; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D XBJ1_tRNA0029 SerGGA; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D XBJ1_tRNA0030 SerGGA; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D XBJ1_tRNA0015 SerTGA; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D XBJ1_tRNA0081 ThrTGT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D XBJ1_tRNA0082 ThrGGT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D XBJ1_tRNA0078 ThrGGT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D XBJ1_tRNA0014 ThrTGT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D XBJ1_tRNA0074 TrpCCA; tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D XBJ1_tRNA0031 TyrGTA; tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D XBJ1_tRNA0080 TyrGTA; tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D XBJ1_tRNA0039 ValTAC; tRNA-Val K14237 tRNA-Val; tRNA Val
D XBJ1_tRNA0043 ValTAC; tRNA-Val K14237 tRNA-Val; tRNA Val
D XBJ1_tRNA0045 ValTAC; tRNA-Val K14237 tRNA-Val; tRNA Val
D XBJ1_tRNA0044 ValTAC; tRNA-Val K14237 tRNA-Val; tRNA Val
D XBJ1_tRNA0032 ValGAC; tRNA-Val K14237 tRNA-Val; tRNA Val
D XBJ1_tRNA0033 ValGAC; tRNA-Val K14237 tRNA-Val; tRNA Val
D XBJ1_3116 gltX; glutamate tRNA synthetase, catalytic subunit K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D XBJ1_1110 glnS; glutamine tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D XBJ1_3286 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D XBJ1_0483 putative Predicted metal-dependent hydrolases K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D XBJ1_2262 aspS; aspartate tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D XBJ1_2159 putative Asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D XBJ1_0793 asnS; asparagine tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D XBJ1_0243 glyQ; glycine tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D XBJ1_0244 glyS; glycine tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D XBJ1_2545 thrS; threonine tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D XBJ1_0886 serS; serine tRNA synthetase; also charges selenocystein tRNA with serine K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D XBJ1_3093 cysS; cysteine tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D XBJ1_0935 metG; methionine tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D XBJ1_4211 fmt; 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D XBJ1_0444 valS; valine tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D XBJ1_2165 leuS; leucine tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D XBJ1_3206 leuS; leucine tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D XBJ1_1726 ileS; isoleucine tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D XBJ1_3421 lysS; lysine tRNA synthetase, constitutive K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D XBJ1_2140 putative Lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D XBJ1_2222 argS; arginine tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D XBJ1_0610 proS; proline tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D XBJ1_2166 putative Proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D XBJ1_3006 hisS; histidine tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D XBJ1_2541 pheS; phenylalanine tRNA synthetase, alpha-subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D XBJ1_2540 pheT; phenylalanine tRNA synthetase, beta-subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D XBJ1_2486 tyrS; tyrosine tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D XBJ1_0052 trpS; tryptophan tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:xbo03060]
D XBJ1_4221 secY; preprotein translocase, membrane component, transport across inner membrane (General Secretory Pathway) K03076 secY; preprotein translocase subunit SecY
D XBJ1_4060 secE; preprotein translocase, membrane component, transport across inner membrane (General Secretory Pathway) K03073 secE; preprotein translocase subunit SecE
D XBJ1_0365 secG; preprotein translocase, membrane component, transport across inner membrane (General Secretory Pathway) K03075 secG; preprotein translocase subunit SecG
D XBJ1_1677 secD; preprotein translocase, auxillary membrane component (General Secretory Pathway) K03072 secD; preprotein translocase subunit SecD
D XBJ1_1676 secF; preprotein translocase, auxillary membrane component (General Secretory Pathway) K03074 secF; preprotein translocase subunit SecF
D XBJ1_1678 yajC; preprotein translocase, auxillary membrane component (General Secretory Pathway) K03210 yajC; preprotein translocase subunit YajC
D XBJ1_4410 yidC; preprotein translocase, cooperates with SecYEG and SecDFyajC translocon, membrane component K03217 yidC; YidC/Oxa1 family membrane protein insertase
D XBJ1_3467 secA; preprotein translocase, ATPase secretion component (General Secretory Pathway) K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D XBJ1_4332 secB; molecular chaperone in protein export, enhances activity of SecA (General Secretory Pathway) K03071 secB; preprotein translocase subunit SecB
D XBJ1_3468 secM; secretion monitor, regulator of secA translation (General Secretory Pathway) K13301 secM; secretion monitor
D XBJ1_3270 ffh; 4.5S-RNP protein, GTP-binding export factor, part of signal recognition particle with 4.5 RNA K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D XBJ1_0553 ftsY; cell division protein: membrane binding (N-terminal); GTPase domain (C-terminal) K03110 ftsY; fused signal recognition particle receptor
D XBJ1_0509 tatA; twin-arginine translocase subunit, sec-independent protein export K03116 tatA; sec-independent protein translocase protein TatA
D XBJ1_0510 tatB; Involved in membrane translocation of periplasmic proteins that preserves folded structures and bound ligands K03117 tatB; sec-independent protein translocase protein TatB
D XBJ1_0511 tatC; twin-arginine translocase subunit, sec-independent protein export K03118 tatC; sec-independent protein translocase protein TatC
D XBJ1_3149 lepB; leader peptidase (signal peptidase I), serine protease K03100 lepB; signal peptidase I [EC:3.4.21.89]
D XBJ1_1725 lspA; prolipoprotein signal peptidase (SPase II) K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:xbo04122]
D XBJ1_3028 iscS; cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D XBJ1_0966 sseA; 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D XBJ1_0548 sirA; small ubiquitous RNA-binding protein required for normal growth, cytoplasmic K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D XBJ1_4066 conserved hypothetical protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D XBJ1_4067 conserved hypothetical protein K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D XBJ1_4068 putative intracellular sulfur oxidation protein (DsrE-like) K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D XBJ1_0761 yccK; putative anaerobic sulfite reductase gamma subunit K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D XBJ1_2831 mnmA; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D XBJ1_0976 moaE; molybdopterin converting factor, subunit 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D XBJ1_0979 moaA; molybdopterin biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D XBJ1_0977 moaD; molybdenum cofactor biosynthesis protein D K03636 moaD; sulfur-carrier protein
D XBJ1_0948 moeB; ATP-dependent adenylate transferase, modifies MoaD K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D XBJ1_1850 hypothetical protein K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]
D XBJ1_0978 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D XBJ1_3510 mog; putative molybdochetalase in molybdopterine biosynthesis, metal incorporation step K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D XBJ1_1656 thiI; sulfur transfer protein (from cys to ThiS and from IscS to U8-tRNA) K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D XBJ1_4031 thiS; C-terminally thiocarboxylated form is intermediate sulfur donor in thiazole formation; part of ThiF/ThiS complex; complexes with ThiG also K03154 thiS; sulfur carrier protein
D XBJ1_4030 thiF; adenylation of ThiS; with ThiI, thiolation of ThiS; in thiazole synthesis K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
C 03050 Proteasome
C 03018 RNA degradation [PATH:xbo03018]
D XBJ1_3688 nudH; nucleotide hydrolase, acts on adenosine(5')-pentaphospho-(5')-adenosine (Nudix family) K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D XBJ1_2867 rne; RNase E: endoribonuclease for rRNA processing and mRNA degradation K08300 rne; ribonuclease E [EC:3.1.26.12]
D XBJ1_4184 rhlB; putative ATP-dependent helicase with nucleoside triP hydrolase domain K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D XBJ1_3651 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D XBJ1_0372 pnp; polynucleotide phosphorylase, has polyadenylase activity K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D XBJ1_0969 rhlE; putative ATP-dependent RNA helicase with P-loop hydrolase domain K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D XBJ1_0327 rnr; RNase R, 3'-5' exoribonuclease K12573 rnr; ribonuclease R [EC:3.1.13.1]
D XBJ1_0374 deaD; cold-shock DeaD box ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D XBJ1_4144 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D XBJ1_4179 rho; transcription termination factor Rho; polarity suppressor K03628 rho; transcription termination factor Rho
D XBJ1_4302 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D XBJ1_1742 dnaK; chaperone Hsp70 in DNA biosynthesis/cell division K04043 dnaK; molecular chaperone DnaK
D XBJ1_3570 groL; chaperone Hsp60 (GroEL), part of GroE chaperone system K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D XBJ1_0321 hfq; host factor I for bacteriophage Q beta replication, plays a role in degradation of RNA transcripts K03666 hfq; host factor-I protein
D XBJ1_2069 ppk; polyphosphate kinase, component of RNA degradosome K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D XBJ1_3669 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:xbo03030]
D XBJ1_2558 holE; DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D XBJ1_0654 putative DNA-directed DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D XBJ1_3075 dnaQ; DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D XBJ1_0604 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D XBJ1_1611 dnaX; DNA polymerase III, tau and gamma subunits; DNA elongation factor III K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D XBJ1_2851 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D XBJ1_3208 holA; DNA polymerase III, delta subunit, probably ATP hydrolase K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D XBJ1_3552 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D XBJ1_0445 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D XBJ1_0002 dnaN; DNA polymerase III, beta-subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D XBJ1_1554 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D XBJ1_1190 Replicative DNA helicase (Replication protein gp12) K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D XBJ1_1251 Replicative DNA helicase (Replication protein gp12) K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D XBJ1_3370 dnaB; replicative DNA helicase; chromosome replication; chain elongation K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D XBJ1_3913 dnaB; replicative DNA helicase; chromosome replication; chain elongation K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D XBJ1_1833 dnaG; DNA biosynthesis; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D XBJ1_3902 ssb; ssDNA-binding protein controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein
D XBJ1_3380 ssb; ssDNA-binding protein controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein
D XBJ1_1171 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XBJ1_1545 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XBJ1_3074 rnhA; RNase HI, degrades RNA of DNA-RNA hybrids K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D XBJ1_0603 rnhB; RNAse HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D XBJ1_4096 polA; multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) K02335 polA; DNA polymerase I [EC:2.7.7.7]
D XBJ1_0236 DNA ligase (modular protein) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D XBJ1_3119 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:xbo03410]
D XBJ1_2303 nth; endonuclease III; DNA glycosylase/apyrimidinic (AP) lyase, acts on 5-formyluracil and 5-hydroxymethyluracil K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D XBJ1_3158 ung; uracil-DNA-glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D XBJ1_3352 mutY; adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D XBJ1_4352 mutM; formamidopyrimidine DNA glycosylase, also acts on 5-formyluracil and 5-hydroxymethyluracil K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D XBJ1_3045 putative DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D XBJ1_0242 tag; 3-methyl-adenine DNA glycosylase I, constitutive K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D XBJ1_2442 xthA; exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D XBJ1_2883 nfo; endonuclease IV, with intrinsic 3'-5' exonuclease activity K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D XBJ1_4096 polA; multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) K02335 polA; DNA polymerase I [EC:2.7.7.7]
D XBJ1_3423 recJ; ssDNA exonuclease, 5'--> 3'-specific, Mg-dependent K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D XBJ1_0236 DNA ligase (modular protein) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D XBJ1_3119 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:xbo03420]
D XBJ1_2843 mfd; transcription-repair ATP-dependent coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D XBJ1_3903 uvrA; DNA excision repair enzyme subunit, with UvrBC K03701 uvrA; excinuclease ABC subunit A
D XBJ1_0981 uvrB; ATP-dependent DNA excision repair enzyme UvrAC K03702 uvrB; excinuclease ABC subunit B
D XBJ1_2675 uvrC; DNA exisiton repair enzyme together with UvrAB K03703 uvrC; excinuclease ABC subunit C
D XBJ1_4151 uvrD; DNA-dependent ATPase I and helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D XBJ1_4096 polA; multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) K02335 polA; DNA polymerase I [EC:2.7.7.7]
D XBJ1_0236 DNA ligase (modular protein) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D XBJ1_3119 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:xbo03430]
D XBJ1_3579 mutS; methyl-directed mismatch repair, recognizes exocyclic adducts of guanosine K03555 mutS; DNA mismatch repair protein MutS
D XBJ1_0319 mutL; enzyme in methyl-directed mismatch repair, stimulates binding of Vsr and MutS to heteroduplex DNA K03572 mutL; DNA mismatch repair protein MutL
D XBJ1_3495 mutH; putative methyl-directed mismatch repair protein with restriction endonuclease-like domain K03573 mutH; DNA mismatch repair protein MutH
D XBJ1_4151 uvrD; DNA-dependent ATPase I and helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D XBJ1_2870 sbcB; exonuclease I, 3'--> 5'-specific; deoxyribophosphodiesterase K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D XBJ1_2585 xseA; exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D XBJ1_1657 xseB; exonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D XBJ1_3423 recJ; ssDNA exonuclease, 5'--> 3'-specific, Mg-dependent K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D XBJ1_3902 ssb; ssDNA-binding protein controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein
D XBJ1_3380 ssb; ssDNA-binding protein controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein
D XBJ1_1171 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XBJ1_1545 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XBJ1_0604 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D XBJ1_0002 dnaN; DNA polymerase III, beta-subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D XBJ1_1611 dnaX; DNA polymerase III, tau and gamma subunits; DNA elongation factor III K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D XBJ1_3208 holA; DNA polymerase III, delta subunit, probably ATP hydrolase K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D XBJ1_2851 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D XBJ1_0654 putative DNA-directed DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D XBJ1_3075 dnaQ; DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D XBJ1_2558 holE; DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D XBJ1_0445 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D XBJ1_3552 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D XBJ1_0236 DNA ligase (modular protein) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D XBJ1_3119 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D XBJ1_0055 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:xbo03440]
D XBJ1_3423 recJ; ssDNA exonuclease, 5'--> 3'-specific, Mg-dependent K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D XBJ1_3902 ssb; ssDNA-binding protein controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein
D XBJ1_3380 ssb; ssDNA-binding protein controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein
D XBJ1_1171 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XBJ1_1545 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XBJ1_0003 recF; gap repair protein with nucleoside triP hydrolase domain, part of RecFOR complex that targets RecA to ssDNA-dsDNA junction K03629 recF; DNA replication and repair protein RecF
D XBJ1_3146 recO; gap repair protein, part of RecFOR complex that targets RecA to ssDNA-dsDNA junction K03584 recO; DNA repair protein RecO (recombination protein O)
D XBJ1_1609 recR; gap repair protein with type I DNA topoisomerase domain, part of RecFOR complex that targets RecA to ssDNA-dsDNA junction K06187 recR; recombination protein RecR
D XBJ1_3287 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA
D XBJ1_4096 polA; multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) K02335 polA; DNA polymerase I [EC:2.7.7.7]
D XBJ1_2266 ruvA; Holliday junction helicase, subunit A K03550 ruvA; holliday junction DNA helicase RuvA
D XBJ1_2267 ruvB; Holliday junction helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D XBJ1_2265 ruvC; Holliday junction nuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D XBJ1_0231 recG; DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D XBJ1_3699 recB; exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D XBJ1_3697 recC; exonuclease V, gamma chain with recB and recD: 5' and 3' nuclease, ATPase, recombinase, helicase K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D XBJ1_3700 recD; exonuclease V, alpha chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D XBJ1_0604 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D XBJ1_0002 dnaN; DNA polymerase III, beta-subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D XBJ1_1611 dnaX; DNA polymerase III, tau and gamma subunits; DNA elongation factor III K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D XBJ1_3208 holA; DNA polymerase III, delta subunit, probably ATP hydrolase K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D XBJ1_2851 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D XBJ1_0654 putative DNA-directed DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D XBJ1_3075 dnaQ; DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D XBJ1_2558 holE; DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D XBJ1_0445 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D XBJ1_3552 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D XBJ1_4280 priA; primosomal protein N' (factor Y) directs replication fork assembly at D-loops, ATP-dependent K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D XBJ1_0330 priB; primosomal replication protein N K02686 priB; primosomal replication protein N
D XBJ1_1613 priC; primosomal replication protein N'' K04067 priC; primosomal replication protein N''
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:xbo03250]
D XBJ1_4092 ppiA; peptidyl-prolyl cis-trans isomerase A (rotamase A) K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:xbo02010]
D XBJ1_3133 cysP; thiosulfate transport protein (ABC superfamily, peri_bind) K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D XBJ1_4301 sbp; sulfate transport protein (ABC superfamily, peri_bind) K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D XBJ1_3132 cysU; thiosulfate transport protein (ABC superfamily, membrane) K02046 cysU; sulfate/thiosulfate transport system permease protein
D XBJ1_3131 cysW; thiosulfate permease W protein (ABC superfamily, membrane) K02047 cysW; sulfate/thiosulfate transport system permease protein
D XBJ1_3129 cysA; sulfate permease A protein, chromate resistance (ABC superfamily, atp_bind) K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D XBJ1_1032 modA; molybdate transport protein (ABC superfamily, peri_bind) K02020 modA; molybdate transport system substrate-binding protein
D XBJ1_1031 modB; molybdate transport protein (ABC superfamily, membrane) K02018 modB; molybdate transport system permease protein
D XBJ1_1030 modC; molybdate transport protein (ABC superfamily, atp_bind) K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D XBJ1_1036 modF; molybdenum transport protein (ABC superfamily, atp_bind) K05776 modF; molybdate transport system ATP-binding protein
D XBJ1_3633 Periplasmic ferric iron-binding protein AfuA K02012 afuA; iron(III) transport system substrate-binding protein
D XBJ1_3632 Ferric transport system permease protein fbpB K02011 afuB; iron(III) transport system permease protein
D XBJ1_3631 afuC; ferric transport protein (ABC superfamily, atp_bind) K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D XBJ1_3687 tbpA; thiamin transport protein (ABC superfamily, peri_bind) K02064 thiB; thiamine transport system substrate-binding protein
D XBJ1_3686 thiP; thiamin transport protein (ABC superfamily, membrane) K02063 thiP; thiamine transport system permease protein
D XBJ1_3685 thiQ; thiamin transport protein (ABC superfamily, atp_bind) K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D XBJ1_0474 potD; spermidine/putrescine transport protein (ABC superfamily, peri_bind) K11069 potD; spermidine/putrescine transport system substrate-binding protein
D XBJ1_2139 ABC transporter, periplasmic binding protein (modular protein) K11069 potD; spermidine/putrescine transport system substrate-binding protein
D XBJ1_0473 potC; spermidine/putrescine transport protein (ABC superfamily, membrane) K11070 potC; spermidine/putrescine transport system permease protein
D XBJ1_0472 potB; spermidine/putrescine transport protein (ABC superfamily, membrane) K11071 potB; spermidine/putrescine transport system permease protein
D XBJ1_0471 potA; spermidine/putrescine transport protein (ABC superfamily, atp_bind) K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D XBJ1_3228 proX; glycine/betaine/proline transport protein (ABC superfamily, peri_bind) K02002 proX; glycine betaine/proline transport system substrate-binding protein
D XBJ1_3227 proW; glycine/betaine/proline transport protein (ABC superfamily, membrane) K02001 proW; glycine betaine/proline transport system permease protein
D XBJ1_3226 proV; glycine/betaine/proline transport protein (ABC superfamily, atp_bind) K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D XBJ1_4046 malE; maltose transport protein, chemotaxis (ABC superfamily, peri_bind) K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D XBJ1_4045 malF; maltose transport protein (ABC superfamily, membrane) K10109 malF; maltose/maltodextrin transport system permease protein
D XBJ1_4044 malG; maltose transport protein (ABC superfamily, membrane) K10110 malG; maltose/maltodextrin transport system permease protein
D XBJ1_4048 malK; bifunctional: maltose transport protein (ABC superfamily, atp_bind) (N-terminal); phenotypic repressor of mal operon (C-terminal) K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D XBJ1_3833 yrbC; putative transport protein (ABC superfamily, atp_bind and membrane) K07323 mlaC; phospholipid transport system substrate-binding protein
D XBJ1_3832 yrbD; putative transport protein (ABC superfamily, peri_bind) K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D XBJ1_3831 yrbE; putative transport protein (ABC superfamily, membrane) K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D XBJ1_3834 conserved hypothetical protein K07122 mlaB; phospholipid transport system transporter-binding protein
D XBJ1_3830 yrbF; putative transport protein (ABC superfamily, atp_bind) K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D XBJ1_0040 rbsB; D-ribose transport protein (ABC superfamily, peri_bind) K10439 rbsB; ribose transport system substrate-binding protein
D XBJ1_0039 rbsC; high-affinity D-ribose transport protein (ABC superfamily, membrane) K10440 rbsC; ribose transport system permease protein
D XBJ1_0038 rbsA; high-affinity D-ribose transport protein (ABC superfamily, atp_bind) K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D XBJ1_0037 rbsD; membrane-associated component of high-affinity D-ribose transport system, membrane K06726 rbsD; D-ribose pyranase [EC:5.4.99.62]
D XBJ1_0188 pstS; high-affinity phosphate transport protein (ABC superfamily, peri_bind) K02040 pstS; phosphate transport system substrate-binding protein
D XBJ1_0189 pstC; high-affinity phosphate transport protein (ABC superfamily, membrane) K02037 pstC; phosphate transport system permease protein
D XBJ1_0190 pstA; high-affinity phosphate transport protein (ABC superfamily, membrane) K02038 pstA; phosphate transport system permease protein
D XBJ1_0191 pstB; high-affinity phosphate transport protein (ABC superfamily, atp_bind) K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D XBJ1_0903 artI; arginine transport protein (ABC superfamily, peri_bind) K09997 artI; arginine transport system substrate-binding protein
D XBJ1_0905 artM; arginine transport protein (ABC superfamily, membrane) K09998 artM; arginine transport system permease protein
D XBJ1_0904 artQ; arginine transport protein (ABC superfamily, membrane) K09999 artQ; arginine transport system permease protein
D XBJ1_0902 artP; arginine transport protein (ABC superfamily, atp_bind) K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]
D XBJ1_3202 gltI; glutamate/aspartate transport protein (ABC superfamily, peri_bind) K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D XBJ1_3204 gltK; glutamate/aspartate transport protein (ABC superfamily, membrane) K10002 gltK; glutamate/aspartate transport system permease protein
D XBJ1_3203 gltJ; glutamate/aspartate transport protein (ABC superfamily, membrane) K10003 gltJ; glutamate/aspartate transport system permease protein
D XBJ1_3205 gltL; glutamate/aspartate transport protein (ABC superfamily, atp_bind) K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D XBJ1_0430 fliY; cysteine transport protein (ABC superfamily, peri_bind) K02424 tcyA; L-cystine transport system substrate-binding protein
D XBJ1_0435 putative cysteine transport protein (ABC superfamily, peri_bind) K02424 tcyA; L-cystine transport system substrate-binding protein
D XBJ1_0432 yecS; putative amino acid transport protein (ABC superfamily, membrane) K10009 tcyB; L-cystine transport system permease protein
D XBJ1_0431 yecC; putative amino acid transport protein (ABC superfamily, atp_bind) K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D XBJ1_0613 metQ; D-methionine transport protein (ABC superfamily, peri_bind) K02073 metQ; D-methionine transport system substrate-binding protein
D XBJ1_0614 metI; D-and L-methionine transport protein (ABC superfamily, membrane) K02072 metI; D-methionine transport system permease protein
D XBJ1_0615 metN; D-and L-methionine transport protein (ABC superfamily, atp_bind) K02071 metN; D-methionine transport system ATP-binding protein
D XBJ1_2423 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XBJ1_2465 mppA; periplasmic murein tripeptide transport protein; negative regulator of multiple antibiotic resistance K15580 oppA; oligopeptide transport system substrate-binding protein
D XBJ1_1692 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XBJ1_2424 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XBJ1_1693 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XBJ1_1694 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XBJ1_1695 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XBJ1_2422 oppB; oligopeptide transport protein (ABC superfamily, membrane) K15581 oppB; oligopeptide transport system permease protein
D XBJ1_2421 oppC; oligopeptide transport protein (ABC superfamily, membrane) K15582 oppC; oligopeptide transport system permease protein
D XBJ1_2420 oppD; oligopeptide transport protein (ABC superfamily, atp_bind) K15583 oppD; oligopeptide transport system ATP-binding protein
D XBJ1_2419 oppF; oligopeptide transport protein (ABC superfamily, atp_bind) K10823 oppF; oligopeptide transport system ATP-binding protein
D XBJ1_0246 dppA; dipeptide transport protein (ABC superfamily, peri_bind) K12368 dppA; dipeptide transport system substrate-binding protein
D XBJ1_0247 dppB; dipeptide transport protein 1 (ABC superfamily, membrane) K12369 dppB; dipeptide transport system permease protein
D XBJ1_0248 dppC; dipeptide transport protein 2 (ABC superfamily, membrane) K12370 dppC; dipeptide transport system permease protein
D XBJ1_0249 dppD; dipeptide transport protein (ABC superfamily, atp_bind) K12371 dppD; dipeptide transport system ATP-binding protein
D XBJ1_0250 dppF; dipeptide transport protein (ABC superfamily, atp_bind) K12372 dppF; dipeptide transport system ATP-binding protein
D XBJ1_2476 sapA; peptide transport protein (ABC superfamily, peri_bind) K19226 sapA; cationic peptide transport system substrate-binding protein
D XBJ1_2477 sapB; peptide transport protein (ABC superfamily, membrane) K19227 sapB; cationic peptide transport system permease protein
D XBJ1_2478 sapC; peptide transport protein (ABC superfamily, membrane) K19228 sapC; cationic peptide transport system permease protein
D XBJ1_2479 sapD; peptide transport protein (ABC superfamily, atp_bind) K19229 sapD; cationic peptide transport system ATP-binding protein
D XBJ1_2480 sapF; peptide transport protein (ABC superfamily, atp_bind) K19230 sapF; cationic peptide transport system ATP-binding protein
D XBJ1_1446 fepB; ferric enterobactin tranport protein (ABC superfamily, peri_bind) K23185 fepB; ferric enterobactin transport system substrate-binding protein
D XBJ1_3244 Ferric enterobactin binding periplasmic protein FepB K25286 fagD; iron-siderophore transport system substrate-binding protein
D XBJ1_1444 fepD; ferric enterobactin transport protein (ABC superfamily, membrane) K23186 fepD; iron-siderophore transport system permease protein
D XBJ1_3243 fepD; ferric enterobactin transport protein (ABC superfamily, membrane) K23186 fepD; iron-siderophore transport system permease protein
D XBJ1_1443 fepG; ferric enterobactin transport protein (ABC superfamily, membrane) K23187 fepG; iron-siderophore transport system permease protein
D XBJ1_3242 Ferric enterobactin transport system permease protein FepG K23187 fepG; iron-siderophore transport system permease protein
D XBJ1_1442 fepC; ferric enterobactin transport protein (ABC superfamily, atp_bind) K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D XBJ1_3241 fepC; ferric enterobactin transport protein (ABC superfamily, atp_bind) K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D XBJ1_3659 btuF; cyano-cobalamin transport protein (ABC superfamily, peri_bind) K06858 btuF; vitamin B12 transport system substrate-binding protein
D XBJ1_2538 btuC; vitamin B12 transport protein (ABC superfamily, membrane) K06073 btuC; vitamin B12 transport system permease protein
D XBJ1_2537 btuD; vitamin B12 transport protein (ABC superfamily, atp_bind) K06074 btuD; vitamin B12 transport system ATP-binding protein [EC:7.6.2.8]
D XBJ1_2228 znuA; high-affinity Zn transport protein (ABC superfamily, peri_bind) K09815 znuA; zinc transport system substrate-binding protein
D XBJ1_2226 znuB; high-affinity Zn transport protein (ABC superfamily, membrane) K09816 znuB; zinc transport system permease protein
D XBJ1_2227 znuC; high-affinity Zn transport protein (ABC superfamily, atp_bind) K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D XBJ1_2402 Periplasmic chelated iron-binding protein yfeA precursor K11604 sitA; manganese/iron transport system substrate-binding protein
D XBJ1_2404 Chelated iron transport system membrane protein yfeC K11605 sitC; manganese/iron transport system permease protein
D XBJ1_2405 Chelated iron transport system membrane protein yfeD K11606 sitD; manganese/iron transport system permease protein
D XBJ1_2403 Chelated iron transport system membrane protein yfeB K11607 sitB; manganese/iron transport system ATP-binding protein
D XBJ1_0839 Cobalt transport protein cbiN K02009 cbiN; cobalt/nickel transport protein
D XBJ1_0840 Protein cbiM K02007 cbiM; cobalt/nickel transport system permease protein
D XBJ1_0838 Cobalt transport protein cbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D XBJ1_0837 Cobalt import ATP-binding protein cbiO K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D XBJ1_2839 lolE; transport protein of outer membrane lipoproteins (ABC superfamily, membrane) K09808 lolC_E; lipoprotein-releasing system permease protein
D XBJ1_2841 lolC; transport protein of outer membrane lipoproteins (ABC superfamily, membrane) K09808 lolC_E; lipoprotein-releasing system permease protein
D XBJ1_2840 lolD; transport protein of outer membrane lipoproteins (ABC superfamily, atp_bind) K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D XBJ1_0448 yjgP; putative transmembrane protein, transport K07091 lptF; lipopolysaccharide export system permease protein
D XBJ1_0449 yjgQ; putative transmembrane protein, transport K11720 lptG; lipopolysaccharide export system permease protein
D XBJ1_3824 yhbG; putative transport protein (ABC superfamily, atp_bind) K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D XBJ1_0555 ftsX; integral membrane cell division protein K09811 ftsX; cell division transport system permease protein
D XBJ1_0554 ftsE; putative transport protein (ABC superfamily, atp_bind) K09812 ftsE; cell division transport system ATP-binding protein
D XBJ1_0810 msbA; lipid transport protein, flippase (ABC superfamily, membrane (N-terminal), atp_bind (C-terminal)) K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D XBJ1_1626 mdlA; putative transport protein, multidrug resistance-like (ABC superfamily, atp_bind) K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D XBJ1_1625 mdlB; putative transport protein, multidrug resistance-like (ABC superfamily, membrane (N-terminal), atp_bind (C-terminal)) K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D XBJ1_0489 Alkaline protease secretion ATP-binding protein aprD K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D XBJ1_0894 cydC; cysteine transport (export) protein (ABC superfamily, membrane (N-terminal), atp_bind (C-terminal)) K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D XBJ1_0893 cydD; cysteine transport (export) protein (ABC superfamily, membrane (N-terminal), atp_bind (C-terminal)) K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D XBJ1_2154 ABC transport protein XpsD (Fragment) (modular protein) K06160 pvdE; putative pyoverdin transport system ATP-binding/permease protein
C 02060 Phosphotransferase system (PTS) [PATH:xbo02060]
D XBJ1_3126 ptsI; PTS family enzyme I and Hpr components, PEP-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D XBJ1_3124 ptsH; PTS family Hpr protein, phosphohistidinoprotein-hexose phosphotransferase K02784 ptsH; phosphocarrier protein HPr
D XBJ1_3127 crr; PTS family enzyme IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D XBJ1_3174 nagE; PTS family enzyme IIC (N-terminal); enzyme IIB (center); enzyme IIA (C-terminal), N-acetylglucosamine-specific K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D XBJ1_0098 treB; PTS family enzyme IIBC, trehalose(maltose)-specific K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D XBJ1_4085 yfeV; putative PTS family enzyme IIBC with sucrose/glucose-specific domain K11192 murP; N-acetylmuramic acid PTS system EIICB component [EC:2.7.1.192]
D XBJ1_3727 chbA; PTS family enzyme IIA, cellobiose/arbutin/salicin sugar-specific K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D XBJ1_3729 chbB; PTS family enzyme IIB, cellobiose/arbutin/salicin sugar-specific K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D XBJ1_3728 PTS system, cellobiose-specific IIC component (CelB) K02761 celB; cellobiose PTS system EIIC component
D XBJ1_2565 manX; PTS family enzyme IIA (N-terminal); enzyme IIB (C-terminal), mannose-specific K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D XBJ1_2566 manY; PTS family enzyme IIC, mannose-specific K02795 manY; mannose PTS system EIIC component
D XBJ1_2567 manZ; PTS family enzyme IID, mannose-specific K02796 manZ; mannose PTS system EIID component
D XBJ1_2884 fruK; fructose-1-phosphate kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D XBJ1_3689 ptsP; PTS family enzyme I, transcriptional regulator (with NPR and NTR proteins) K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D XBJ1_3819 npr; NPr, phosphocarrier protein (HPr-like), nitrogen-related K08485 ptsO; phosphocarrier protein NPr
D XBJ1_3821 ptsN; PTS family enzyme IIA, sugar-specific, regulates N metabolism K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:xbo03070]
D XBJ1_1814 tolC; outer membrane channel; tolerance to colicin E1, segregation of daughter chromosomes, role in organic solvent tolerance K12340 tolC; outer membrane protein
D XBJ1_3336 bifunctional prepilin peptidase: leader peptidase; methyl transferase (General Secretory Pathway) (fragment) K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
D XBJ1_1677 secD; preprotein translocase, auxillary membrane component (General Secretory Pathway) K03072 secD; preprotein translocase subunit SecD
D XBJ1_1676 secF; preprotein translocase, auxillary membrane component (General Secretory Pathway) K03074 secF; preprotein translocase subunit SecF
D XBJ1_4060 secE; preprotein translocase, membrane component, transport across inner membrane (General Secretory Pathway) K03073 secE; preprotein translocase subunit SecE
D XBJ1_0365 secG; preprotein translocase, membrane component, transport across inner membrane (General Secretory Pathway) K03075 secG; preprotein translocase subunit SecG
D XBJ1_4221 secY; preprotein translocase, membrane component, transport across inner membrane (General Secretory Pathway) K03076 secY; preprotein translocase subunit SecY
D XBJ1_1678 yajC; preprotein translocase, auxillary membrane component (General Secretory Pathway) K03210 yajC; preprotein translocase subunit YajC
D XBJ1_4410 yidC; preprotein translocase, cooperates with SecYEG and SecDFyajC translocon, membrane component K03217 yidC; YidC/Oxa1 family membrane protein insertase
D XBJ1_3467 secA; preprotein translocase, ATPase secretion component (General Secretory Pathway) K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D XBJ1_3468 secM; secretion monitor, regulator of secA translation (General Secretory Pathway) K13301 secM; secretion monitor
D XBJ1_0553 ftsY; cell division protein: membrane binding (N-terminal); GTPase domain (C-terminal) K03110 ftsY; fused signal recognition particle receptor
D XBJ1_4332 secB; molecular chaperone in protein export, enhances activity of SecA (General Secretory Pathway) K03071 secB; preprotein translocase subunit SecB
D XBJ1_3270 ffh; 4.5S-RNP protein, GTP-binding export factor, part of signal recognition particle with 4.5 RNA K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D XBJ1_0509 tatA; twin-arginine translocase subunit, sec-independent protein export K03116 tatA; sec-independent protein translocase protein TatA
D XBJ1_0510 tatB; Involved in membrane translocation of periplasmic proteins that preserves folded structures and bound ligands K03117 tatB; sec-independent protein translocase protein TatB
D XBJ1_0511 tatC; twin-arginine translocase subunit, sec-independent protein export K03118 tatC; sec-independent protein translocase protein TatC
D XBJ1_0259 xhlB; XhlB (TpsB protein) K11017 shlB; hemolysin activation/secretion protein
D XBJ1_0258 xhlA; Hemolysin XhlA(TpsA-related protein) K11016 shlA; hemolysin
D XBJ1_1501 putative Vrg family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D XBJ1_2114 Conserved hypothetical protein (Vgr family protein, that may be secreted via SST VI system) K11904 vgrG; type VI secretion system secreted protein VgrG
D XBJ1_0278 Putative Rhs accessory genetic element (modular protein) K11904 vgrG; type VI secretion system secreted protein VgrG
D XBJ1_1308 VgrG K11904 vgrG; type VI secretion system secreted protein VgrG
D XBJ1_0181 conserved hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D XBJ1_0560 conserved hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D XBJ1_1087 conserved hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D XBJ1_1301 VgrG K11904 vgrG; type VI secretion system secreted protein VgrG
D XBJ1_2645 conserved hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D XBJ1_0261 Hemolysin-coregulated protein Hcp(probable Type VI secreted cytotoxin system component) K11903 hcp; type VI secretion system secreted protein Hcp
D XBJ1_2101 putative secretion system effector of SST VI cluster (Hcp family) K11903 hcp; type VI secretion system secreted protein Hcp
D XBJ1_0269 conserved hypothetical protein (probable lipoprotein of SST VI cluster) K11906 vasD; type VI secretion system protein VasD
D XBJ1_2108 conserved protein of unknown function (putative lipoprotein of SST VI cluster) K11906 vasD; type VI secretion system protein VasD
D XBJ1_0276 Conserved Hypothetical protein (probable component of SSt VI cluster) K11891 impL; type VI secretion system protein ImpL
D XBJ1_2105 Conserved hypothetical protein (ImcF domain protein precursor of SST VI cluster) K11891 impL; type VI secretion system protein ImpL
D XBJ1_0271 conserved hypothetical protein (probable component of SST VI cluster) K11892 impK; type VI secretion system protein ImpK
D XBJ1_2106 Conserved hypothetical protein with OmpA/MotB domains (probable component of SST VI cluster) K11892 impK; type VI secretion system protein ImpK
D XBJ1_0272 clpB; putative ClpA/B-type chaperone (Putative ATPase with chaperone activity; probable component of SST VI cluster) K11907 vasG; type VI secretion system protein VasG
D XBJ1_2096 putative ClpA/B-type chaperone (Putative ATPase with chaperone activity; probable component of SST VI cluster) K11907 vasG; type VI secretion system protein VasG
D XBJ1_1147 ppkA; serine/threonine protein kinase K11912 ppkA; serine/threonine-protein kinase PpkA [EC:2.7.11.1]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:xbo02020]
D XBJ1_1687 phoR; sensory histidine kinase in two-component regulatory system with PhoB, regulation of Pi uptake, senses Pi K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D XBJ1_1688 phoB; response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family) K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D XBJ1_0188 pstS; high-affinity phosphate transport protein (ABC superfamily, peri_bind) K02040 pstS; phosphate transport system substrate-binding protein
D XBJ1_2836 phoQ; sensory histidine kinase in two-component regulatory system with PhoP, regulates gene expression at low [Mg+], senses Mg+ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D XBJ1_2835 phoP; response regulator in two-component regulatory system with PhoQ, regulates gene expression at low [Mg+] (OmpR family) K07660 phoP; two-component system, OmpR family, response regulator PhoP
D XBJ1_0486 pagC; Virulence membrane protein pagC precursor K07804 pagC; putatice virulence related protein PagC
D XBJ1_0187 EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D XBJ1_0186 ompR; response regulator in two-component regulatory system with EnvZ, regulates ompF and ompC expression (OmpR family) K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D XBJ1_0794 ompN; outer membrane pore protein N, non-specific K09476 ompF; outer membrane pore protein F
D XBJ1_1704 ompN; outer membrane pore protein N, non-specific K09476 ompF; outer membrane pore protein F
D XBJ1_4312 cpxA; sensory histidine kinase in two-component regulatory system with CpxR, regulates genes involved in folding/degrading periplasmic proteins, senses changes in the cell envelope K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D XBJ1_4311 cpxR; response regulator in two-component regulatory system with CpxA, regulates genes involved in folding/degrading periplasmic proteins (OmpR family) K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D XBJ1_2733 baeS; sensory histidine kinase in two-component regulatory system wtih BaeR K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D XBJ1_2734 baeR; response regulator in two-component regulatory system with BaeS (OmpR family) K07664 baeR; two-component system, OmpR family, response regulator BaeR
D XBJ1_2730 mdtA; membrane protein inolved in drug resistance K07799 mdtA; membrane fusion protein, multidrug efflux system
D XBJ1_2731 mdtB; multidrug transport protein (RND family) K07788 mdtB; multidrug efflux pump
D XBJ1_2732 mdtC; multidrug transport protein, outer membrane (RND family) K07789 mdtC; multidrug efflux pump
D XBJ1_2536 arnB; putative PLP-dependent aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D XBJ1_1917 flhD; transcriptional regulator of flagellar class II biosynthesis, anaerobic respiration and the Entner-Doudoroff pathway, tetramer with FlhC K02403 flhD; flagellar transcriptional activator FlhD
D XBJ1_1918 flhC; transcriptional regulator of flagellar class II biosynthesis, anaerobic respiration and the Entner-Doudoroff pathway, tetramer with FlhD K02402 flhC; flagellar transcriptional activator FlhC
D XBJ1_1995 Flagellin K02406 fliC; flagellin
D XBJ1_1996 fliA; sigma F (sigma 28) factor of RNA polymerase, transcription of late flagellar genes (class 3a and 3b operons) K02405 fliA; RNA polymerase sigma factor FliA
D XBJ1_1919 motA; proton conductor component of motor, torque generator K02556 motA; chemotaxis protein MotA
D XBJ1_1070 kdpD; sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D XBJ1_1071 kdpE; response regulator in two-component regulatory system with KdpD, regulation of potassium translocation (OmpR family) K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D XBJ1_1067 kdpA; P-type ATPase, high-affinity potassium transport system, A chain K01546 kdpA; potassium-transporting ATPase potassium-binding subunit
D XBJ1_1068 kdpB; P-type ATPase, high-affinity potassium transport system, B chain, a phophatase-like domain K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6]
D XBJ1_1069 kdpC; P-type ATPase, high-affinity potassium transport system, C chain K01548 kdpC; potassium-transporting ATPase KdpC subunit
D XBJ1_3853 arcB; hybrid sensory histidine kinase in two-component regulatory system with ArcA, regulates respiration and fermentation, senses oxidized quinones K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D XBJ1_3517 arcA; response regulator in two-component regulatory system with ArcB (or CpxA), regulates respiratory and fermentative metabolism (OmpR family) K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D XBJ1_2972 Sensor protein K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D XBJ1_2973 qseB; response regulator in two-component regulatory system with QseC, regulates flagella and motility by quorum sensing (OmpR family) K07774 tctD; two-component system, OmpR family, response regulator TctD
D XBJ1_2974 TctC protein K07795 tctC; putative tricarboxylic transport membrane protein
D XBJ1_0001 dnaA; DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes K02313 dnaA; chromosomal replication initiator protein
D XBJ1_0395 putative D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D XBJ1_0940 sfcA; NAD-linked malate dehydrogenase K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D XBJ1_2123 conserved hypothetical protein K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D XBJ1_2592 narP; response regulator in two-component regulatory system with NarQ (or NarX), regulates anaerobic respiratory gene expression K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D XBJ1_0537 frdA; fumarate reductase, anaerobic, catalytic and NAD/flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D XBJ1_0536 frdB; fumarate reductase, anaerobic, Fe-S subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D XBJ1_0535 frdC; fumarate reductase, anaerobic, membrane anchor polypeptide K00246 frdC; succinate dehydrogenase subunit C
D XBJ1_0534 frdD; fumarate reductase, anaerobic, membrane anchor polypeptide K00247 frdD; succinate dehydrogenase subunit D
D XBJ1_2121 uhpC; membrane protein which senses glucose-6-phosphate, interacts with UhpB and UhpA, regulates uhpT expression K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D XBJ1_2122 uhpB; sensory histidine kinase in two-component regulatory sytem with UhpA, regulates uhptT expression K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D XBJ1_3090 uhpA; response regulator (activator) in two-component regulatory system wtih UhpB, regulates uhpT expression (LuxR/UhpA family) K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA
D XBJ1_3089 uhpT; hexose phosphate transport protein (MFS family) K07784 uhpT; MFS transporter, OPA family, hexose phosphate transport protein UhpT
D XBJ1_0612 rcsF; regulator in colanic acid synthesis; overexpression confers mucoid phenotype, increases capsule synthesis K06080 rcsF; RcsF protein
D XBJ1_0731 rcsC; hybrid sensory histidine kinase in two-component regulatory system with RcsB and YojN, regulates capsule biosynthesis, cell division genes, OsmC expression K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D XBJ1_0733 rcsD; putative sensory histidine kinase (phosphotransfer intermediate) associated with the RcsBC two-component regulatory system K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D XBJ1_0732 rcsB; response regulator (positive) in two-component regulatory system with RcsC and YojN, regulates capsule biosynthesis, cell division genes, OsmC expression (LuxR/UhpA familiy) K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D XBJ1_3656 Sensor protein BarA K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D XBJ1_2676 uvrY; putative regulator in two-component regulatory system with BarA (LuxR/UhpA familiy) K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D XBJ1_3285 csrA; carbon storage regulator, post-translational activator of flhDC expression, regulates biofilm formation, RNA-binding K03563 csrA; carbon storage regulator
D XBJ1_3865 ampC; beta-lactamase/D-ala carboxypeptidase; penicillin resistance, penicillin-binding protein (PBP) K01467 ampC; beta-lactamase class C [EC:3.5.2.6]
D XBJ1_0742 yraJ; putative outer membrane protein K07347 fimD; outer membrane usher protein
D XBJ1_1945 yraJ; putative outer membrane protein K07347 fimD; outer membrane usher protein
D XBJ1_2365 yraJ; putative outer membrane protein K07347 fimD; outer membrane usher protein
D XBJ1_0587 glnD; uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D XBJ1_3035 glnB; regulatory protein (P-II) for nitrogen assimilation by glutamine synthetase (ATase) K04751 glnB; nitrogen regulatory protein P-II 1
D XBJ1_0210 glnL; sensory kinase (soluble) in two-component regulatory system with GlnG, nitrogen regulation (nitrogen regulator II, NRII) K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D XBJ1_0209 glnG; response regulator in two-component regulatory system with GlnL, nitrogen regulation (EBP family) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D XBJ1_0211 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D XBJ1_3648 dctA; citrate and C4-dicarboxylic acids transport protein (DAACS family) K11103 dctA; aerobic C4-dicarboxylate transport protein
D XBJ1_3823 rpoN; sigma N (sigma 54) factor of RNA polymerase K03092 rpoN; RNA polymerase sigma-54 factor
D XBJ1_3039 yfhK; putative sensory kinase in regulatory system K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D XBJ1_3037 yfhA; putative response regulator in two-component regulatory system (EBP family) K07715 glrR; two-component system, NtrC family, response regulator GlrR
D XBJ1_1925 cheR; glutamate methyltransferase, chemotactic response regulator K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D XBJ1_1923 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D XBJ1_1924 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor
D XBJ1_1922 cheW; purine-binding chemotaxis protein; regulation K03408 cheW; purine-binding chemotaxis protein CheW
D XBJ1_1921 cheA; chemotactic sensory histidine kinase (soluble) in two-component regulatory system with CheB and CheY, senses chemotactic signal K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D XBJ1_1927 cheY; chemotactic response regulator in two-component regulatory system with CheA, transmits signals to FliM flagelllar motor component K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D XBJ1_1926 cheB; chemotactic response regulator; methylesterase, in two-component regulatory system with CheA, regulates chemotactic response K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D XBJ1_3205 gltL; glutamate/aspartate transport protein (ABC superfamily, atp_bind) K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D XBJ1_3204 gltK; glutamate/aspartate transport protein (ABC superfamily, membrane) K10002 gltK; glutamate/aspartate transport system permease protein
D XBJ1_3203 gltJ; glutamate/aspartate transport protein (ABC superfamily, membrane) K10003 gltJ; glutamate/aspartate transport system permease protein
D XBJ1_3202 gltI; glutamate/aspartate transport protein (ABC superfamily, peri_bind) K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D XBJ1_4089 crp; transcriptional regulator, cyclic AMP receptor protein (CAMP-binding family), interacts with RNAP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D XBJ1_3349 yneH; putative glutaminase/carboxypeptidase K01425 glsA; glutaminase [EC:3.5.1.2]
D XBJ1_1053 cydA; cytochrome d terminal oxidase, polypeptide subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D XBJ1_2126 cioA; ubiquinol oxidase subunit I, cyanide insensitive K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D XBJ1_1052 cydB; cytochrome d terminal oxidase, polypeptide subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D XBJ1_2125 cioB; ubiquinol oxidase subunit II, cyanide insensitive K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D XBJ1_1051 Protein ybgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D XBJ1_1092 RTX toxin ABC transporter (IM-ABC) protein RtxB K12530 rtxB; ATP-binding cassette, subfamily B, bacterial RtxB
D XBJ1_1093 RTX toxin ABC transporter protein (MFP) RtxD K12532 rtxD; membrane fusion protein, RTX toxin transport system
D XBJ1_1094 Putative RTX toxin secretion ATP-binding protein K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE
D XBJ1_1814 tolC; outer membrane channel; tolerance to colicin E1, segregation of daughter chromosomes, role in organic solvent tolerance K12340 tolC; outer membrane protein
D XBJ1_2410 putative Mcf protein (fragment) K19615 fitD; insecticidal toxin
D XBJ1_4176 rffE; UDP-N-acetyl glucosamine-2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D XBJ1_4175 rffD; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D XBJ1_1948 flgM; anti-FliA (anti-sigma) factor; also known as RflB protein K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:xbo02024]
D XBJ1_3281 luxS; quorum-sensing protein, produces autoinducer-acyl-homoserine lactone-signaling molecules K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D XBJ1_0321 hfq; host factor I for bacteriophage Q beta replication, plays a role in degradation of RNA transcripts K03666 hfq; host factor-I protein
D XBJ1_0410 Anthranilate synthase component 1 (Anthranilate synthase component I) K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D XBJ1_2279 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D XBJ1_2278 Anthranilate synthase component II (Glutamine amido-transferase) K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D XBJ1_0409 pabA; aminodeoxychorismate synthase subunit II, component of p-aminobenzoate synthase multienzyme complex K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D XBJ1_2512 aroH; 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase), tryptophan-repressible K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D XBJ1_1039 aroG; 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase, phenylalanine-repressible) K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D XBJ1_3264 aroF; 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase), tyrosine-repressible K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D XBJ1_3039 yfhK; putative sensory kinase in regulatory system K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D XBJ1_3037 yfhA; putative response regulator in two-component regulatory system (EBP family) K07715 glrR; two-component system, NtrC family, response regulator GlrR
D XBJ1_1917 flhD; transcriptional regulator of flagellar class II biosynthesis, anaerobic respiration and the Entner-Doudoroff pathway, tetramer with FlhC K02403 flhD; flagellar transcriptional activator FlhD
D XBJ1_1918 flhC; transcriptional regulator of flagellar class II biosynthesis, anaerobic respiration and the Entner-Doudoroff pathway, tetramer with FlhD K02402 flhC; flagellar transcriptional activator FlhC
D XBJ1_1071 kdpE; response regulator in two-component regulatory system with KdpD, regulation of potassium translocation (OmpR family) K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D XBJ1_4109 ydeV; putative sugar kinase, actin-like ATPase domain K11216 lsrK; autoinducer-2 kinase [EC:2.7.1.189]
D XBJ1_4108 lsrR; putative transcriptional repressor with DNA-binding Winged helix domain K11531 lsrR; lsr operon transcriptional repressor
D XBJ1_4104 lsrF; putative aldolase with ribulose-phoshate binding barrel K08321 lsrF; 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase [EC:2.3.1.245]
D XBJ1_4103 conserved hypothetical protein K11530 lsrG; (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase [EC:5.3.1.32]
D XBJ1_3489 putative long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase) (LACS) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D XBJ1_2242 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D XBJ1_4089 crp; transcriptional regulator, cyclic AMP receptor protein (CAMP-binding family), interacts with RNAP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D XBJ1_3996 zur; transcriptional repressor of Zn transport system (Fur family) K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D XBJ1_1516 putative Methyltransferase K20331 toxA; toxoflavin synthase [EC:2.1.1.349]
D XBJ1_2779 putative Methyltransferase K20331 toxA; toxoflavin synthase [EC:2.1.1.349]
D XBJ1_2296 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D XBJ1_3883 WD domain protein K20332 toxC; toxoflavin biosynthesis protein ToxC
D XBJ1_3881 conserved hypothetical protein K20333 toxD; toxoflavin biosynthesis protein ToxD
D XBJ1_1672 ribD; bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D XBJ1_2423 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XBJ1_2465 mppA; periplasmic murein tripeptide transport protein; negative regulator of multiple antibiotic resistance K15580 oppA; oligopeptide transport system substrate-binding protein
D XBJ1_1692 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XBJ1_2424 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XBJ1_1693 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XBJ1_1694 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XBJ1_1695 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XBJ1_2422 oppB; oligopeptide transport protein (ABC superfamily, membrane) K15581 oppB; oligopeptide transport system permease protein
D XBJ1_2421 oppC; oligopeptide transport protein (ABC superfamily, membrane) K15582 oppC; oligopeptide transport system permease protein
D XBJ1_2420 oppD; oligopeptide transport protein (ABC superfamily, atp_bind) K15583 oppD; oligopeptide transport system ATP-binding protein
D XBJ1_2419 oppF; oligopeptide transport protein (ABC superfamily, atp_bind) K10823 oppF; oligopeptide transport system ATP-binding protein
D XBJ1_4410 yidC; preprotein translocase, cooperates with SecYEG and SecDFyajC translocon, membrane component K03217 yidC; YidC/Oxa1 family membrane protein insertase
D XBJ1_4060 secE; preprotein translocase, membrane component, transport across inner membrane (General Secretory Pathway) K03073 secE; preprotein translocase subunit SecE
D XBJ1_0365 secG; preprotein translocase, membrane component, transport across inner membrane (General Secretory Pathway) K03075 secG; preprotein translocase subunit SecG
D XBJ1_4221 secY; preprotein translocase, membrane component, transport across inner membrane (General Secretory Pathway) K03076 secY; preprotein translocase subunit SecY
D XBJ1_1678 yajC; preprotein translocase, auxillary membrane component (General Secretory Pathway) K03210 yajC; preprotein translocase subunit YajC
D XBJ1_3467 secA; preprotein translocase, ATPase secretion component (General Secretory Pathway) K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D XBJ1_0553 ftsY; cell division protein: membrane binding (N-terminal); GTPase domain (C-terminal) K03110 ftsY; fused signal recognition particle receptor
D XBJ1_4332 secB; molecular chaperone in protein export, enhances activity of SecA (General Secretory Pathway) K03071 secB; preprotein translocase subunit SecB
D XBJ1_3270 ffh; 4.5S-RNP protein, GTP-binding export factor, part of signal recognition particle with 4.5 RNA K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:xbo02030]
D XBJ1_1923 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D XBJ1_1924 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor
D XBJ1_4046 malE; maltose transport protein, chemotaxis (ABC superfamily, peri_bind) K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D XBJ1_0040 rbsB; D-ribose transport protein (ABC superfamily, peri_bind) K10439 rbsB; ribose transport system substrate-binding protein
D XBJ1_0246 dppA; dipeptide transport protein (ABC superfamily, peri_bind) K12368 dppA; dipeptide transport system substrate-binding protein
D XBJ1_1921 cheA; chemotactic sensory histidine kinase (soluble) in two-component regulatory system with CheB and CheY, senses chemotactic signal K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D XBJ1_1922 cheW; purine-binding chemotaxis protein; regulation K03408 cheW; purine-binding chemotaxis protein CheW
D XBJ1_1927 cheY; chemotactic response regulator in two-component regulatory system with CheA, transmits signals to FliM flagelllar motor component K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D XBJ1_1928 cheZ; chemotactic response, CheY protein phophatase K03414 cheZ; chemotaxis protein CheZ
D XBJ1_1926 cheB; chemotactic response regulator; methylesterase, in two-component regulatory system with CheA, regulates chemotactic response K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D XBJ1_1925 cheR; glutamate methyltransferase, chemotactic response regulator K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D XBJ1_2705 fliG; flagellar biosynthesis; component of motor switching and energizing K02410 fliG; flagellar motor switch protein FliG
D XBJ1_2712 fliM; flagellar biosynthesis; component of motor switch and energizing K02416 fliM; flagellar motor switch protein FliM
D XBJ1_2713 fliN; flagellar biosynthesis; component of motor switch and energizing K02417 fliN; flagellar motor switch protein FliN
D XBJ1_1919 motA; proton conductor component of motor, torque generator K02556 motA; chemotaxis protein MotA
D XBJ1_1920 motB; enables flagellar motor rotation, linking torque machinery to cell wall K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:xbo02040]
D XBJ1_2703 fliE; flagellar biosynthesis; basal-body component K02408 fliE; flagellar hook-basal body complex protein FliE
D XBJ1_2704 fliF; flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein K02409 fliF; flagellar M-ring protein FliF
D XBJ1_2705 fliG; flagellar biosynthesis; component of motor switching and energizing K02410 fliG; flagellar motor switch protein FliG
D XBJ1_2706 fliH; putative flagellar biosynthesis; export of flagellar proteins K02411 fliH; flagellar assembly protein FliH
D XBJ1_2707 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D XBJ1_2708 fliJ; flagellar fliJ protein K02413 fliJ; flagellar protein FliJ
D XBJ1_2709 fliK; flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D XBJ1_2711 fliL; flagellar biosynthesis K02415 fliL; flagellar protein FliL
D XBJ1_2712 fliM; flagellar biosynthesis; component of motor switch and energizing K02416 fliM; flagellar motor switch protein FliM
D XBJ1_2713 fliN; flagellar biosynthesis; component of motor switch and energizing K02417 fliN; flagellar motor switch protein FliN
D XBJ1_2714 Protein mopB K02418 fliO; flagellar protein FliO/FliZ
D XBJ1_2715 fliP; flagellar biosynthesis K02419 fliP; flagellar biosynthesis protein FliP
D XBJ1_2716 fliQ; flagellar biosynthesis K02420 fliQ; flagellar biosynthesis protein FliQ
D XBJ1_2717 fliR; putative flagellar biosynthetic protein, regulator K02421 fliR; flagellar biosynthesis protein FliR
D XBJ1_1939 flhA; putative export protein for flagellar biosynthesis K02400 flhA; flagellar biosynthesis protein FlhA
D XBJ1_1938 flhB; putative part of export apparatus for flagellar proteins K02401 flhB; flagellar biosynthesis protein FlhB
D XBJ1_1949 flgA; flagellar biosynthesis; assembly of basal-body periplasmic P ring K02386 flgA; flagellar basal body P-ring formation protein FlgA
D XBJ1_1950 flgB; flagellar biosynthesis; cell-proximal portion of basal-body rod K02387 flgB; flagellar basal-body rod protein FlgB
D XBJ1_1951 flgC; flagellar biosynthesis; cell-proximal portion of basal-body rod K02388 flgC; flagellar basal-body rod protein FlgC
D XBJ1_1952 flgD; flagellar biosynthesis; initiation of hook assembly K02389 flgD; flagellar basal-body rod modification protein FlgD
D XBJ1_1953 flgE; flagellar biosynthesis; hook protein K02390 flgE; flagellar hook protein FlgE
D XBJ1_1954 flgF; flagellar biosynthesis; cell-proximal portion of basal-body rod K02391 flgF; flagellar basal-body rod protein FlgF
D XBJ1_1955 flgG; flagellar biosynthesis; cell-distal portion of basal-body rod K02392 flgG; flagellar basal-body rod protein FlgG
D XBJ1_1957 flgH; flagellar biosynthesis; basal-body outer-membrane L (lipopolysaccharide layer) ring protein K02393 flgH; flagellar L-ring protein FlgH
D XBJ1_1959 flgI; putative flagella basal body protein K02394 flgI; flagellar P-ring protein FlgI
D XBJ1_1960 flgJ; flagellar biosynthesis K02395 flgJ; peptidoglycan hydrolase FlgJ
D XBJ1_1961 flgK; flagellar biosynthesis; hook-filament junction protein 1 K02396 flgK; flagellar hook-associated protein 1
D XBJ1_1962 flgL; flagellar biosynthesis; hook-filament junction protein K02397 flgL; flagellar hook-associated protein 3 FlgL
D XBJ1_1995 Flagellin K02406 fliC; flagellin
D XBJ1_1994 fliD; flagellar biosynthesis; filament capping protein, enables filament assembly K02407 fliD; flagellar hook-associated protein 2
D XBJ1_1993 fliS; flagellar biosynthesis; repressor of class 3a and 3b operons (RflA activity) K02422 fliS; flagellar secretion chaperone FliS
D XBJ1_1992 fliT; putative flagellar biosynthesis; export chaperone for FliD K02423 fliT; flagellar protein FliT
D XBJ1_1919 motA; proton conductor component of motor, torque generator K02556 motA; chemotaxis protein MotA
D XBJ1_1920 motB; enables flagellar motor rotation, linking torque machinery to cell wall K02557 motB; chemotaxis protein MotB
D XBJ1_1948 flgM; anti-FliA (anti-sigma) factor; also known as RflB protein K02398 flgM; negative regulator of flagellin synthesis FlgM
D XBJ1_1947 flgN; flagellar biosynthesis; believed to be export chaperone for FlgK and FlgL K02399 flgN; flagellar biosynthesis protein FlgN
D XBJ1_0430 fliY; cysteine transport protein (ABC superfamily, peri_bind) K02424 tcyA; L-cystine transport system substrate-binding protein
D XBJ1_0435 putative cysteine transport protein (ABC superfamily, peri_bind) K02424 tcyA; L-cystine transport system substrate-binding protein
D XBJ1_1997 fliZ; putative regulator of FliA K02425 fliZ; regulator of sigma S factor FliZ
D XBJ1_1834 rpoD; sigma D (sigma 70) factor of RNA polymerase K03086 rpoD; RNA polymerase primary sigma factor
D XBJ1_1917 flhD; transcriptional regulator of flagellar class II biosynthesis, anaerobic respiration and the Entner-Doudoroff pathway, tetramer with FlhC K02403 flhD; flagellar transcriptional activator FlhD
D XBJ1_1918 flhC; transcriptional regulator of flagellar class II biosynthesis, anaerobic respiration and the Entner-Doudoroff pathway, tetramer with FlhD K02402 flhC; flagellar transcriptional activator FlhC
D XBJ1_3823 rpoN; sigma N (sigma 54) factor of RNA polymerase K03092 rpoN; RNA polymerase sigma-54 factor
D XBJ1_1996 fliA; sigma F (sigma 28) factor of RNA polymerase, transcription of late flagellar genes (class 3a and 3b operons) K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D XBJ1_3651 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:xbo01501]
D XBJ1_0794 ompN; outer membrane pore protein N, non-specific K09476 ompF; outer membrane pore protein F
D XBJ1_1704 ompN; outer membrane pore protein N, non-specific K09476 ompF; outer membrane pore protein F
D XBJ1_1642 ampG; muropeptide transport protein (MFS family) K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D XBJ1_2846 nagZ; beta N-acetyl-glucosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D XBJ1_3865 ampC; beta-lactamase/D-ala carboxypeptidase; penicillin resistance, penicillin-binding protein (PBP) K01467 ampC; beta-lactamase class C [EC:3.5.2.6]
D XBJ1_2423 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XBJ1_2465 mppA; periplasmic murein tripeptide transport protein; negative regulator of multiple antibiotic resistance K15580 oppA; oligopeptide transport system substrate-binding protein
D XBJ1_1692 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XBJ1_2424 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XBJ1_1693 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XBJ1_1694 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XBJ1_1695 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XBJ1_2422 oppB; oligopeptide transport protein (ABC superfamily, membrane) K15581 oppB; oligopeptide transport system permease protein
D XBJ1_2421 oppC; oligopeptide transport protein (ABC superfamily, membrane) K15582 oppC; oligopeptide transport system permease protein
D XBJ1_2420 oppD; oligopeptide transport protein (ABC superfamily, atp_bind) K15583 oppD; oligopeptide transport system ATP-binding protein
D XBJ1_2419 oppF; oligopeptide transport protein (ABC superfamily, atp_bind) K10823 oppF; oligopeptide transport system ATP-binding protein
D XBJ1_2301 Beta-lactamase (Penicillinase) [Contains: Beta-lactamase form I; Beta-lactamase form II] K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D XBJ1_1617 acrA; component of acridine efflux pump K03585 acrA; membrane fusion protein, multidrug efflux system
D XBJ1_1618 acrB; multidrug efflux pump (RND family) K18138 acrB; multidrug efflux pump
D XBJ1_1814 tolC; outer membrane channel; tolerance to colicin E1, segregation of daughter chromosomes, role in organic solvent tolerance K12340 tolC; outer membrane protein
D XBJ1_0065 mrcA; bifunctional penicillin-binding protein 1a: transglycosylase (N-terminal); transpeptidase (C-terminal) K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D XBJ1_3212 mrdA; cell elongation-specific transpeptidase of penicillin-binding protein 2 (peptidoglycan synthetase) K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D XBJ1_3482 ftsI; division-specific transpeptidase, penicillin-binding protein 3 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:xbo01502]
D XBJ1_0395 putative D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D XBJ1_3474 ddlB; D-alanine-D-alanine ligase B, affects cell division K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D XBJ1_0109 putative D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D XBJ1_2455 dadX; alanine racemase 2, PLP-binding, catabolic K01775 alr; alanine racemase [EC:5.1.1.1]
D XBJ1_3912 alr; alanine racemase 1, PLP-binding, biosynthetic K01775 alr; alanine racemase [EC:5.1.1.1]
D XBJ1_3480 murF; D-alanine:D-alanine-adding enzyme K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D XBJ1_3479 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D XBJ1_3476 murG; UDP-N-acetylglucosamine:N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:xbo01503]
D XBJ1_2836 phoQ; sensory histidine kinase in two-component regulatory system with PhoP, regulates gene expression at low [Mg+], senses Mg+ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D XBJ1_2835 phoP; response regulator in two-component regulatory system with PhoQ, regulates gene expression at low [Mg+] (OmpR family) K07660 phoP; two-component system, OmpR family, response regulator PhoP
D XBJ1_2536 arnB; putative PLP-dependent aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D XBJ1_2535 arnC; putative sugar transferase with nucleotide-diphospho-sugar transferase domain K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D XBJ1_2534 arnA; putative formyltransferase K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305]
D XBJ1_2533 PbgP4 protein K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-]
D XBJ1_2532 arnT; 4-amino-4-deoxy-L-arabinose transferase (lipid A modification) K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43]
D XBJ1_2530 Inner membrane protein yfbW K12962 arnE; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnE
D XBJ1_2529 yfbJ; putative membrane protein K12963 arnF; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnF
D XBJ1_2476 sapA; peptide transport protein (ABC superfamily, peri_bind) K19226 sapA; cationic peptide transport system substrate-binding protein
D XBJ1_2477 sapB; peptide transport protein (ABC superfamily, membrane) K19227 sapB; cationic peptide transport system permease protein
D XBJ1_2478 sapC; peptide transport protein (ABC superfamily, membrane) K19228 sapC; cationic peptide transport system permease protein
D XBJ1_2479 sapD; peptide transport protein (ABC superfamily, atp_bind) K19229 sapD; cationic peptide transport system ATP-binding protein
D XBJ1_2480 sapF; peptide transport protein (ABC superfamily, atp_bind) K19230 sapF; cationic peptide transport system ATP-binding protein
D XBJ1_0491 Secreted alkaline metalloproteinase K01406 prtC; serralysin [EC:3.4.24.40]
D XBJ1_0609 nlpE; outer membrane lipoprotein, involved in copper homeostasis and in adhesion K06079 cutF; copper homeostasis protein (lipoprotein)
D XBJ1_4312 cpxA; sensory histidine kinase in two-component regulatory system with CpxR, regulates genes involved in folding/degrading periplasmic proteins, senses changes in the cell envelope K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D XBJ1_4311 cpxR; response regulator in two-component regulatory system with CpxA, regulates genes involved in folding/degrading periplasmic proteins (OmpR family) K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D XBJ1_0318 amiB; N-acetylmuramoyl-l-alanine amidase II, a murein hydrolase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D XBJ1_3703 amiC; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D XBJ1_2506 ycfS; putative enzyme with LysM domain K19236 ycfS; L,D-transpeptidase YcfS
D XBJ1_4097 dsbA; periplasmic protein disulfide isomerase I, disulfide bond formation K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D XBJ1_4092 ppiA; peptidyl-prolyl cis-trans isomerase A (rotamase A) K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D XBJ1_1617 acrA; component of acridine efflux pump K03585 acrA; membrane fusion protein, multidrug efflux system
D XBJ1_1618 acrB; multidrug efflux pump (RND family) K18138 acrB; multidrug efflux pump
D XBJ1_1814 tolC; outer membrane channel; tolerance to colicin E1, segregation of daughter chromosomes, role in organic solvent tolerance K12340 tolC; outer membrane protein
D XBJ1_0601 lpxA; UDP-N-acetylglucosamine acetyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:xbo01000]
C 01001 Protein kinases [BR:xbo01001]
D XBJ1_1147 ppkA; serine/threonine protein kinase K11912 ppkA; serine/threonine-protein kinase PpkA [EC:2.7.11.1]
D XBJ1_1484 putative protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D XBJ1_1687 phoR; sensory histidine kinase in two-component regulatory system with PhoB, regulation of Pi uptake, senses Pi K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D XBJ1_2836 phoQ; sensory histidine kinase in two-component regulatory system with PhoP, regulates gene expression at low [Mg+], senses Mg+ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D XBJ1_0187 EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D XBJ1_4312 cpxA; sensory histidine kinase in two-component regulatory system with CpxR, regulates genes involved in folding/degrading periplasmic proteins, senses changes in the cell envelope K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D XBJ1_2733 baeS; sensory histidine kinase in two-component regulatory system wtih BaeR K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D XBJ1_1070 kdpD; sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D XBJ1_3853 arcB; hybrid sensory histidine kinase in two-component regulatory system with ArcA, regulates respiration and fermentation, senses oxidized quinones K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D XBJ1_2972 Sensor protein K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D XBJ1_2123 conserved hypothetical protein K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D XBJ1_2122 uhpB; sensory histidine kinase in two-component regulatory sytem with UhpA, regulates uhptT expression K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D XBJ1_0733 rcsD; putative sensory histidine kinase (phosphotransfer intermediate) associated with the RcsBC two-component regulatory system K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D XBJ1_0731 rcsC; hybrid sensory histidine kinase in two-component regulatory system with RcsB and YojN, regulates capsule biosynthesis, cell division genes, OsmC expression K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D XBJ1_3656 Sensor protein BarA K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D XBJ1_0376 yehU; putative sensory kinase in two-component regulatory system K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D XBJ1_0210 glnL; sensory kinase (soluble) in two-component regulatory system with GlnG, nitrogen regulation (nitrogen regulator II, NRII) K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D XBJ1_3039 yfhK; putative sensory kinase in regulatory system K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D XBJ1_1921 cheA; chemotactic sensory histidine kinase (soluble) in two-component regulatory system with CheB and CheY, senses chemotactic signal K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:xbo01009]
D XBJ1_4302 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D XBJ1_1606 htpG; chaperone Hsp90, heat shock protein C 62.5 K04079 HSP90A; molecular chaperone HtpG
D XBJ1_3529 serB; 3-phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:xbo01002]
D XBJ1_1725 lspA; prolipoprotein signal peptidase (SPase II) K03101 lspA; signal peptidase II [EC:3.4.23.36]
D XBJ1_3336 bifunctional prepilin peptidase: leader peptidase; methyl transferase (General Secretory Pathway) (fragment) K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
D XBJ1_1667 Pyrrolidone-carboxylate peptidase 1 (5-oxoprolyl-peptidase 1) (Pyroglutamyl-peptidase I 1) (PGP-I 1) (Pyrase 1) K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3]
D XBJ1_2583 guaA; GMP synthetase (glutamine aminotransferase) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D XBJ1_2893 spr; suppresses thermosensitivity of prc mutants at low osmolality (lipoprotein) K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D XBJ1_2523 lipoprotein (fragment) K13695 nlpC; probable lipoprotein NlpC
D XBJ1_2959 purF; amidophosphoribosyltransferase (PRPP amidotransferase) K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D XBJ1_3852 gltB; glutamate synthase, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D XBJ1_0019 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D XBJ1_4320 conserved hypothetical protein K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D XBJ1_3770 conserved hypothetical protein K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D XBJ1_0153 Peptidase C56, PfpI K05520 yhbO; deglycase [EC:3.5.1.124]
D XBJ1_2506 ycfS; putative enzyme with LysM domain K19236 ycfS; L,D-transpeptidase YcfS
D XBJ1_0799 ycbB; putative carboxypeptidasewith PGDB-like domain K21470 ycbB; L,D-transpeptidase YcbB
D XBJ1_1037 conserved hypothetical protein; putative membrane protein K07052 K07052; CAAX protease family protein
D XBJ1_0791 pepN; aminopeptidase N, a cysteinylglycinase K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D XBJ1_0093 prlC; oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D XBJ1_0491 Secreted alkaline metalloproteinase K01406 prtC; serralysin [EC:3.4.24.40]
D XBJ1_0395 putative D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D XBJ1_3963 19 K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D XBJ1_3698 ptrA; protease III K01407 ptrA; protease III [EC:3.4.24.55]
D XBJ1_0252 yhjJ; putative peptidase with LuxS/MPP-like metallohydrolase domain K07263 pqqL; zinc protease [EC:3.4.24.-]
D XBJ1_0447 pepA; aminopeptidase A, a cyteinylglycinase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D XBJ1_3021 pepB; aminopeptidase B, a cysteinylglycinase K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D XBJ1_2271 Peptidase M19, renal dipeptidase precursor K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D XBJ1_2595 dapE; N-succinyl-diaminopimelate deacylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D XBJ1_3301 pepD; aminopeptidase D (aminoacyl-histidine dipeptidase) K01270 pepD; dipeptidase D [EC:3.4.13.-]
D XBJ1_2229 putative peptidase protein YebA K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D XBJ1_0588 map; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D XBJ1_3618 methionine aminopeptidase (fragment) K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D XBJ1_0519 pepQ; proline dipeptidase K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
D XBJ1_3439 pepP; proline aminopeptidase P II K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D XBJ1_2185 putative Thermostable carboxypeptidase 1 (Carboxypeptidase Taq) K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19]
D XBJ1_0362 ftsH; ATP-dependent zinc-metallo protease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D XBJ1_2550 htpX; heat shock protein, integral membrane protein K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D XBJ1_0878 putative metalloprotease yggG K07387 K07387; metalloprotease [EC:3.4.24.-]
D XBJ1_2626 Complete genome; segment 10/17 K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]
D XBJ1_0596 ecfE; membrane-associated protease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D XBJ1_3839 degQ; serine endoprotease K04772 degQ; serine protease DegQ [EC:3.4.21.-]
D XBJ1_3838 degS; periplasmic serine endoprotease K04691 hhoB; serine protease DegS [EC:3.4.21.-]
D XBJ1_2587 ptrB; protease II K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D XBJ1_0912 dacC; D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D XBJ1_3215 dacA; D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D XBJ1_0450 ampH; beta-lactamase/D-ala carboxypeptidase, penicillin-binding protein K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-]
D XBJ1_0358 dacB; D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 4 K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D XBJ1_1637 clpP; proteolytic subunit of clpA-clpP ATP-dependent serine protease K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D XBJ1_1739 clpP; proteolytic subunit of clpA-clpP ATP-dependent serine protease K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D XBJ1_2045 ClpP protease K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D XBJ1_1635 lon; DNA-binding ATP-dependent protease La; heat shock K-protein K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D XBJ1_0780 ycbZ; putative ATP-dependent protease K04770 lonH; Lon-like ATP-dependent protease [EC:3.4.21.-]
D XBJ1_3997 lexA; transcriptional repressor for SOS response (signal peptidase of LexA family) K01356 lexA; repressor LexA [EC:3.4.21.88]
D XBJ1_3149 lepB; leader peptidase (signal peptidase I), serine protease K03100 lepB; signal peptidase I [EC:3.4.21.89]
D XBJ1_2559 Proline iminopeptidase (PIP) (Prolyl aminopeptidase) (PAP) K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D XBJ1_2551 prc; carboxy-terminal protease for penicillin-binding protein 3 K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D XBJ1_2447 sppA; protease IV, a signal peptide peptidase K04773 sppA; protease IV [EC:3.4.21.-]
D XBJ1_2285 sohB; putative peptidase K04774 sohB; serine protease SohB [EC:3.4.21.-]
D XBJ1_0141 glpG; putative membrane protein, member of glp regulon K02441 glpG; rhomboid protease GlpG [EC:3.4.21.105]
D XBJ1_2161 putative Muramoyltetrapeptide carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D XBJ1_0678 Sb5 K06904 GP4; Escherichia/Staphylococcus phage prohead protease
D XBJ1_1267 Sb5 K06904 GP4; Escherichia/Staphylococcus phage prohead protease
D XBJ1_3950 Capsid protease K06904 GP4; Escherichia/Staphylococcus phage prohead protease
D XBJ1_4284 hslV; peptidase component of the HslUV protease K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D XBJ1_1684 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D XBJ1_2736 yegQ; putative protease K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D XBJ1_3815 pmbA; putative enzyme for maturation of Microcin B17 and degradation of CcdA K03592 pmbA; PmbA protein
D XBJ1_3810 tldD; putative enzyme for maturation of Microcin B17 and degradation of CcdA with winged helix domain K03568 tldD; TldD protein
D XBJ1_1360 eco; ecotin, a serine protease inhibitor K08276 eco; ecotin
D XBJ1_3019 conserved hypothetical protein; putative exported protein K06894 yfhM; alpha-2-macroglobulin
D XBJ1_0324 hflC; with HflK, part of modulator for protease specific for FtsH phage lambda cII repressor K04087 hflC; modulator of FtsH protease HflC
D XBJ1_0323 hflK; with HflC, part of modulator for protease specific for FtsH phage lambda cII repressor K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:xbo01003]
D XBJ1_3856 mtgA; peptidoglycan transglycosylase, biosynthetic K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D XBJ1_3018 pbpC; transglycosylase of penicillin-binding protein 1c K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D XBJ1_3664 mrcB; bifunctional penicillin-binding protein 1b: glycosyl transferase (N-terminal); transpeptidase (C-terminal) K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D XBJ1_0065 mrcA; bifunctional penicillin-binding protein 1a: transglycosylase (N-terminal); transpeptidase (C-terminal) K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D XBJ1_4167 rffM; putative UDP-N-acetyl-D-mannosaminuronic acid transferase, with FMN-linked oxidoreductase domain K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180]
D XBJ1_4169 rffT; TDP-Fuc4NAc:lipid II transferase K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325]
D XBJ1_4178 rfe; UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:xbo01005]
D XBJ1_0601 lpxA; UDP-N-acetylglucosamine acetyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D XBJ1_0602 lpxB; tetraacyldisaccharide-1-P synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D XBJ1_3470 lpxC; UDP-3-O-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D XBJ1_0599 lpxD; UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D XBJ1_3095 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D XBJ1_0809 lpxK; tetraacyldisaccharide 4' kinase (lipid A 4'kinase) K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D XBJ1_1895 lpxL; lauroyl transferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D XBJ1_2230 lpxM; myristoyl transferase in lipid A biosynthesis, suppressor of htrB (lpxL) K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D XBJ1_2892 yeiU; putative phosphatase K19803 lpxT; Kdo2-lipid A phosphotransferase [EC:2.7.4.29]
D XBJ1_4349 waaA; 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D XBJ1_2532 arnT; 4-amino-4-deoxy-L-arabinose transferase (lipid A modification) K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43]
D XBJ1_2205 kdsA; 3-deoxy-D-manno-octulosonic acid 8-P synthetase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D XBJ1_0807 kdsB; CTP:CMP-3-deoxy-D-manno-octulosonate transferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D XBJ1_3827 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, KDO biosynthesis (E. coli B strain) K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D XBJ1_3828 yrbH; putative isomerase with phosphosugar-binding domain K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D XBJ1_4340 rfaC; ADP-heptose; LPS heptosyl transferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D XBJ1_4350 Lipopolysaccharide core biosynthesis glycosyl transferase kdtX K12984 waaE; (heptosyl)LPS beta-1,4-glucosyltransferase [EC:2.4.1.-]
D XBJ1_4339 rfaF; ADP-heptose; LPS heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D XBJ1_4347 Lipopolysaccharide core biosynthesis protein RfaG (Glucosyltransferase I) K02844 waaG; UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-]
D XBJ1_4353 O-antigen ligase K02847 waaL; O-antigen ligase [EC:2.4.99.26]
D XBJ1_4346 rfaQ; lipopolysaccharide core biosynthesis; modification of heptose region of core K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D XBJ1_3329 lpcA; D-sedoheptulose 7-phosphate isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D XBJ1_0626 gmhB; D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D XBJ1_1822 rfaE; putative bifunctional ADP-L-glycero-D-manno-heptose synthase: putaive kinase (N-terminal); sugar nucleotide transferase (C-terminal) K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D XBJ1_4338 rfaD; ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D XBJ1_4168 wzyE; putative ECA polymerization protein K02853 wzyE; enterobacterial common antigen polymerase [EC:2.4.99.27]
D XBJ1_4324 hypothetical protein; putative membrane protein K26858 wzy; O-antigen polymerase [EC:2.4.99.27]
D XBJ1_4178 rfe; UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:xbo01011]
D XBJ1_3836 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D XBJ1_4253 murB; UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D XBJ1_3475 murC; UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D XBJ1_3478 murD; UDP-N-acetylmuramoylalanine-D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D XBJ1_3481 murE; UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D XBJ1_3474 ddlB; D-alanine-D-alanine ligase B, affects cell division K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D XBJ1_0109 putative D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D XBJ1_2455 dadX; alanine racemase 2, PLP-binding, catabolic K01775 alr; alanine racemase [EC:5.1.1.1]
D XBJ1_3912 alr; alanine racemase 1, PLP-binding, biosynthetic K01775 alr; alanine racemase [EC:5.1.1.1]
D XBJ1_4259 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D XBJ1_2161 putative Muramoyltetrapeptide carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D XBJ1_3479 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D XBJ1_3476 murG; UDP-N-acetylglucosamine:N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D XBJ1_0910 ybjG; putative phosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D XBJ1_2219 mviN; putative virulence factor K03980 murJ; putative peptidoglycan lipid II flippase
D XBJ1_0065 mrcA; bifunctional penicillin-binding protein 1a: transglycosylase (N-terminal); transpeptidase (C-terminal) K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D XBJ1_3664 mrcB; bifunctional penicillin-binding protein 1b: glycosyl transferase (N-terminal); transpeptidase (C-terminal) K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D XBJ1_3018 pbpC; transglycosylase of penicillin-binding protein 1c K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D XBJ1_3212 mrdA; cell elongation-specific transpeptidase of penicillin-binding protein 2 (peptidoglycan synthetase) K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D XBJ1_3482 ftsI; division-specific transpeptidase, penicillin-binding protein 3 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D XBJ1_0912 dacC; D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D XBJ1_3215 dacA; D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D XBJ1_0358 dacB; D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 4 K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D XBJ1_0450 ampH; beta-lactamase/D-ala carboxypeptidase, penicillin-binding protein K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-]
D XBJ1_3856 mtgA; peptidoglycan transglycosylase, biosynthetic K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D XBJ1_2506 ycfS; putative enzyme with LysM domain K19236 ycfS; L,D-transpeptidase YcfS
D XBJ1_0799 ycbB; putative carboxypeptidasewith PGDB-like domain K21470 ycbB; L,D-transpeptidase YcbB
D XBJ1_0395 putative D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D XBJ1_2893 spr; suppresses thermosensitivity of prc mutants at low osmolality (lipoprotein) K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D XBJ1_2229 putative peptidase protein YebA K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D XBJ1_3963 19 K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D XBJ1_3524 slt; lytic murein transglycosylase, soluble K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D XBJ1_3706 mltA; membrane-bound lytic murein transglycosylase A K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D XBJ1_2380 putative lipoprotein precursor K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D XBJ1_3354 mltC; lytic murein transglycosylase C, membrane-bound K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29]
D XBJ1_3071 mltD; lytic murein transglycosylase C, membrane-bound K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D XBJ1_2400 conserved hypothetical protein K08308 mltE; peptidoglycan lytic transglycosylase E [EC:4.2.2.29]
D XBJ1_3041 yfhD; putative protein with periplasmic binding protein domain and lysozyme domain K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29]
D XBJ1_2853 conserved hypothetical protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D XBJ1_3214 rlpA; a minor lipoprotein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D XBJ1_0318 amiB; N-acetylmuramoyl-l-alanine amidase II, a murein hydrolase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D XBJ1_3703 amiC; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D XBJ1_2746 ybjR; putative amidase K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D XBJ1_3458 ampD; N-acetyl-anhydromuramyl-L-alanine amidase K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
D XBJ1_2504 lpp; murein lipoprotein, links outer and inner membranes K06078 lpp; murein lipoprotein
C 01004 Lipid biosynthesis proteins [BR:xbo01004]
D XBJ1_2860 fabD; malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D XBJ1_2696 putative [Acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D XBJ1_3898 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D XBJ1_2861 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III; acetylCoA ACP transacylase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D XBJ1_3900 hypothetical protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D XBJ1_3894 putative 3-oxoacyl-[acyl-carrier-protein] synthase K18473 fabY; acetoacetyl-[acyl-carrier protein] synthase [EC:2.3.1.180]
D XBJ1_2975 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D XBJ1_2855 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D XBJ1_1403 3-ketoacyl-CoA reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D XBJ1_2859 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D XBJ1_2950 3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D XBJ1_0781 fabA; beta-hydroxydecanoyl thioester dehydrase (trans-2-decenoyl-ACP isomerase) K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D XBJ1_0600 fabZ; (3R)-hydroxymyristol acyl carrier protein dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D XBJ1_2481 fabI; enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D XBJ1_1589 tesA; multifunctional: acyl-CoA thioesterase I; protease I; lysophospholipaseL(I) K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D XBJ1_2413 yciA; putative enzyme with thioesterase/thiol ester dehydrase-isomerase domain K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D XBJ1_1631 putative acyl-CoA thioester hydrolase ybaW K12500 tesC; thioesterase III [EC:3.1.2.-]
D XBJ1_0050 acs; acetyl-CoA synthetase, has propionyl-CoA synthetase activity K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D XBJ1_1347 prpE; putative acetyl-CoA synthetase of the propionate catabolism operon with firefly luciferase-like ATPase domain K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D XBJ1_3489 putative long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase) (LACS) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D XBJ1_2242 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D XBJ1_3999 plsB; glycerolphosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D XBJ1_2862 plsX; fatty acid/phospholipid synthesis protein, methyltransferase domain K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D XBJ1_1829 ygiH; putative membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D XBJ1_1808 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:xbo01008]
D XBJ1_2951 putative Glutamate-1-semialdehyde 2,1-aminomutase K15329 pksE; trans-AT polyketide synthase, acyltransferase and oxidoreductase domains
D XBJ1_1435 entB; 2,3-dihydro-2,3-dihydroxybenzoate synthetase (isochorismatase) (N-terminal); aryl carrier protein (C-terminal) (enterobactin synthase multienzyme complex component) K01252 entB; bifunctional isochorismate lyase / aryl carrier protein [EC:3.3.2.1 6.3.2.14]
D XBJ1_2612 entB; 2,3-dihydro-2,3-dihydroxybenzoate synthetase (isochorismatase) (N-terminal); aryl carrier protein (C-terminal) (enterobactin synthase multienzyme complex component) K01252 entB; bifunctional isochorismate lyase / aryl carrier protein [EC:3.3.2.1 6.3.2.14]
D XBJ1_3508 NrgA K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-]
D XBJ1_2611 entE; 2,3-dihydroxybenzoate-AMP ligase, component of the enterobactin synthase multienzyme complex K02363 entE; 2,3-dihydroxybenzoate---[aryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.71]
D XBJ1_1441 Synthetase CbsF K24101 vabF; L-arginine---[L-arginyl-carrier protein] ligase [EC:6.2.1.63]
D XBJ1_0108 putative aspartate/glutamate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01006 Prenyltransferases [BR:xbo01006]
D XBJ1_1658 ispA; geranyltranstransferase (=farnesyldiphosphate synthase) K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D XBJ1_0353 ispB; octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D XBJ1_0594 ispU; undecaprenyl pyrophosphate synthetase (di-trans,poly-cis-decaprenylcistransferase) K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D XBJ1_0320 miaA; delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D XBJ1_4286 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D XBJ1_4000 ubiA; p-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D XBJ1_1650 cyoE; protoheme IX farnesyltransferase (heme O biosynthesis) K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:xbo01007]
D XBJ1_3116 gltX; glutamate tRNA synthetase, catalytic subunit K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D XBJ1_1110 glnS; glutamine tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D XBJ1_3668 yadB; putative glutamyl t-RNA synthetase with nucleotidylyl transferase domain K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D XBJ1_2486 tyrS; tyrosine tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D XBJ1_0052 trpS; tryptophan tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D XBJ1_3093 cysS; cysteine tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D XBJ1_2222 argS; arginine tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D XBJ1_0935 metG; methionine tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D XBJ1_1726 ileS; isoleucine tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D XBJ1_0444 valS; valine tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D XBJ1_2165 leuS; leucine tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D XBJ1_3206 leuS; leucine tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D XBJ1_3421 lysS; lysine tRNA synthetase, constitutive K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D XBJ1_2140 putative Lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D XBJ1_2262 aspS; aspartate tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D XBJ1_2159 putative Asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D XBJ1_0793 asnS; asparagine tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D XBJ1_3006 hisS; histidine tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D XBJ1_0243 glyQ; glycine tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D XBJ1_0244 glyS; glycine tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D XBJ1_0886 serS; serine tRNA synthetase; also charges selenocystein tRNA with serine K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D XBJ1_0610 proS; proline tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D XBJ1_2166 putative Proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D XBJ1_2545 thrS; threonine tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D XBJ1_3286 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D XBJ1_0483 putative Predicted metal-dependent hydrolases K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D XBJ1_2541 pheS; phenylalanine tRNA synthetase, alpha-subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D XBJ1_2540 pheT; phenylalanine tRNA synthetase, beta-subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D XBJ1_0796 aspC; aspartate aminotransferase, PLP-dependent K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D XBJ1_0241 avtA; valine-pyruvate aminotransferase K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66]
D XBJ1_2928 yfbQ; putative PLP-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D XBJ1_3911 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D XBJ1_0918 hisC; histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D XBJ1_4337 kbl; 2-amino-3-ketobutyrate CoA ligase (glycine acetyltransferase) K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D XBJ1_1024 bioF; 7-keto-8-aminopelargonic acid synthetase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D XBJ1_2942 argM; succinylornithine transaminase, also has acetylornitine transaminase activity, PLP-dependent K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81]
D XBJ1_0083 goaG; 4-aminobutyrate aminotransferase, PLP-dependent K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D XBJ1_1026 bioA; 7,8-diaminopelargonic acid synthetase, PLP-dependent K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D XBJ1_3661 hemL; glutamate-1-semialdehyde aminotransferase (aminomutase), PLP-dependent K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D XBJ1_4193 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D XBJ1_0817 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D XBJ1_2536 arnB; putative PLP-dependent aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D XBJ1_4316 Glutamine--scyllo-inositol transaminase K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D XBJ1_4171 rffA; TDP-4-oxo-6-deoxy-D-glucose transaminase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:xbo00194]
D XBJ1_0021 atpC; membrane-bound ATP synthase, F1 sector, epsilon-subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D XBJ1_0022 atpD; membrane-bound ATP synthase, F1 sector, beta-subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D XBJ1_0023 atpG; membrane-bound ATP synthase, F1 sector, gamma-subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D XBJ1_0024 atpA; membrane-bound ATP synthase, F1 sector, alpha-subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D XBJ1_0025 atpH; membrane-bound ATP synthase, F1 sector, delta-subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D XBJ1_0026 atpF; membrane-bound ATP synthase, F0 sector, subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D XBJ1_0027 atpE; membrane-bound ATP synthase, F0 sector, subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D XBJ1_0028 atpB; membrane-bound ATP synthase, F0 sector, subunit a, important for FO assembly K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D XBJ1_0029 atpI; membrane-bound ATP synthase subunit, F1-F0-type proton-ATPase K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:xbo03000]
D XBJ1_0875 Regulator of the 4HPA-hydroxylase operon K02508 hpaA; AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein
D XBJ1_2745 soxS; transcriptional activator of superoxide response regulon (AraC/XylS family) K13631 soxS; AraC family transcriptional regulator, mar-sox-rob regulon activator
D XBJ1_3520 rob; transcriptional activator for resistance to antibiotics, organic solvents and heavy metals (AraC/XylS family) (right origin-binding protein) K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D XBJ1_1399 Exoenzyme S synthesis regulatory protein exsA K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA
D XBJ1_0494 gcvA; transcriptional regulator (postitive) of cleavage of glycine (LysR family) K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D XBJ1_4190 ilvY; transcriptional activator for isoleucine and valine synthesis (LysR family) K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D XBJ1_0498 metR; transcriptional regulator of methionine biosynthesis (LysR family) K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D XBJ1_1730 nhaR; transcriptional activator of cation transport (LysR family) K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D XBJ1_4266 oxyR; transcriptional regulator of oxidative stress, regulates intracellular hydrogen peroxide (LysR family) K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D XBJ1_3446 argP; inhibitor of replication initiation; transcriptional regulator of dnaA and argK (LysR family) K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D XBJ1_3490 leuO; putative transcriptional regulator of leucine biosynthesis with periplasmic binding protein domain (LysR family) K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D XBJ1_2290 cysB; transcriptional regulator of biosynthesis of L-cysteine and regulator of sulfur assimilation (LysR familiy) K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D XBJ1_4198 HTH-type transcriptional regulator hdfR (H-NS-depdendent flhDC regulator) K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
D XBJ1_0140 glpR; transcriptional repressor for the dissimilation of sn-glycerol 3-phosphate (DeoR family) K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D XBJ1_0042 rbsR; transcriptional repressor for ribose metabolism (GalR/LacI family) K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D XBJ1_4282 cytR; transcriptional repressor for genes of nucleoside catabolism and recycling (GalR/LacI family) K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D XBJ1_3486 fruR; transcriptional regulator of the control of carbon and energy metabolism (GalR/LacI family) K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D XBJ1_2496 purR; transcriptional repressor for de novo purine nucleotide synthesis (GalR/LacI family) K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D XBJ1_3724 gntR; transcriptional repressor for gluconate utilization (GalR/LacI familiy) K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D XBJ1_2986 Histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D XBJ1_2457 fadR; transcriptional regulator (positive regulator of fabB and fabA, negative regulator of fad), with acyl-CoA (GntR family) K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D XBJ1_3456 pdhR; transcriptional repressor for pyruvate dehydrogenase complex (GntR family) K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D XBJ1_0081 putative GntR-family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D XBJ1_4122 Transcriptional regulator, GntR family (fragment) K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D XBJ1_3306 betI; transcriptional repressor for the cellular response to osmotic stress (TetR/AcrR family) K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D XBJ1_1616 acrR; transcriptional repressor for multidrug efflux pump (TetR/AcrR family) K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D XBJ1_4364 ttk; putative transcriptional regulator of dUTPase subunit with homeodomain-like DNA binding domain (TetR/AcrR family) K05501 slmA; TetR/AcrR family transcriptional regulator
D XBJ1_2394 Transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D XBJ1_1101 TetR; bacterial regulatory protein K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon
D XBJ1_4264 fabR; putative regulator with homeodomain-like DNA binding domain with homeodomain-like DNA binding domain (TetR/AcrR family) K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D XBJ1_0970 ybiH; putative transcriptional repressor with homeodomain-like DNA binding domain (TetR/AcrR family) K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D XBJ1_0033 asnC; transcriptional regulator of asparagine biosynthesis (AsnC family) K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D XBJ1_0890 lrp; transcriptional regulator of lrp regulon and for high-affinity branched-chain amino acid transport system (AsnC family) K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D XBJ1_1628 ybaO; putative transcriptional regulator (AsnC familiy) K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D XBJ1_4039 malT; transcriptional activator of maltose utilization, binds maltotriose (inducer) and ATP (LysR familiy) K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D XBJ1_2490 slyA; transcriptional activator for hemolysin (MarR family) K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D XBJ1_3232 mprA; transcriptional repressor of multidrug resistance pump (MarR family) K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D XBJ1_1594 cueR; transcriptional repressor for CopA a copper exporting ATPase (MerR family) K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D XBJ1_4215 zntR; Zn(II)-responsive transcriptional regulator, regulates Zn export (MerR family) K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D XBJ1_1108 fur; ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D XBJ1_3996 zur; transcriptional repressor of Zn transport system (Fur family) K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D XBJ1_4004 iclR; transcriptional repressor for glyoxylate bypass (IclR family) K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D XBJ1_4089 crp; transcriptional regulator, cyclic AMP receptor protein (CAMP-binding family), interacts with RNAP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D XBJ1_2353 fnr; transcriptional regulator of aerobic, anaerobic respiration, osmotic balance (CAMP-binding family) K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D XBJ1_3029 iscR; repressor of the iscRSUA operon, involved in assembly of Fe-S clusters K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D XBJ1_0326 conserved hypothetical protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D XBJ1_0481 putative transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
D XBJ1_2232 yebK; putative transcriptional regulator with phosphosugar-binding domain K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D XBJ1_4252 birA; bifunctional: biotin-[acetylCoA carboxylase] holoenzyme synthetase; transcriptional repressor of biotin synthesis (BirA family) K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D XBJ1_3790 fis; DNA-binding protein for site-specific recombination and inversion, transcription of rRNA and tRNA operons, and DNA replication K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D XBJ1_3523 trpR; transcriptional repressor for tryptophan biosynthesis (TrpR family) K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D XBJ1_1343 prpR; transcriptional activator of propionate catabolism (EBP family) K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D XBJ1_0350 sfsB; transcriptional activator of maltose metabolism K07724 ner; Ner family transcriptional regulator
D XBJ1_3561 DNA-binding protein Ner K07724 ner; Ner family transcriptional regulator
D XBJ1_1540 sfsB; transcriptional activator of maltose metabolism K07724 ner; Ner family transcriptional regulator
D XBJ1_3383 transcriptional activator of maltose metabolism (modular protein) K07724 ner; Ner family transcriptional regulator
D XBJ1_4114 transcriptional activator of maltose metabolism (modular protein) K07724 ner; Ner family transcriptional regulator
D XBJ1_3787 hypothetical protein K07724 ner; Ner family transcriptional regulator
D XBJ1_3788 transcriptional activator of maltose metabolism (fragment) K07724 ner; Ner family transcriptional regulator
D XBJ1_3527 nadR; transcriptional regulator of NAD biosynthesis; regulator of PnuC activity; NMN adenylyltransferase K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D XBJ1_1035 modE; transcriptional repressor for molybdate uptake K02019 modE; molybdate transport system regulatory protein
D XBJ1_1417 conserved hypothetical protein K07727 K07727; putative transcriptional regulator
D XBJ1_3015 Transcriptional regulator, XRE family K07727 K07727; putative transcriptional regulator
D XBJ1_3560 MunI regulatory protein (fragment) K07729 K07729; putative transcriptional regulator
D XBJ1_4278 metJ; transcriptional repressor for methionine biosynthesis (MetJ family) K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D XBJ1_1998 putA; multifunctional: transcriptional repressor of proline utilization; proline dehydrogenase; pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D XBJ1_3188 relB; Qin prophage; part of two-component toxin-antitoxin system with RelE, transcriptional repressor of relBE operon K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D XBJ1_3895 conserved hypothetical protein K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D XBJ1_1640 bolA; transcriptional activator of morphogenic pathway (BolA family), important in general stress response K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D XBJ1_0513 rfaH; transcriptional activator affecting biosynthesis, assembly and export of lipopolysaccharide core, F pilin, and haemolysin K05785 rfaH; transcriptional antiterminator RfaH
D XBJ1_0348 argR; transcriptional repressor of arginine synthesis (ArgR familiy) K03402 argR; transcriptional regulator of arginine metabolism
D XBJ1_3177 nagC; transcriptional repressor of genes for catabolic enzymes (NagC/XylR (ROK) family) K02565 nagC; N-acetylglucosamine repressor
D XBJ1_2321 dgsA; transcriptional repressor for glucose uptake and glycolysis, global repressor of carbohydrate metabolism (NagC/XylR (ROK) family) K15545 mlc; transcriptional regulator of PTS gene
D XBJ1_2469 tyrR; transcriptional regulator of aromatic amino acid biosynthesis and aromatic amino acid transport (EBP family) K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D XBJ1_2629 gcvR; transcriptional repressor for cleavage of glycine K03567 gcvR; glycine cleavage system transcriptional repressor
D XBJ1_0116 paaX; transcriptional repressor for phenylacetic acid degradation K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D XBJ1_2475 pspF; transcriptional activator of phage shock proteins (EBP family) K03974 pspF; psp operon transcriptional activator
D XBJ1_2472 pspC; transcriptional activator of the psp operon with PspB, phage shock protein K03973 pspC; phage shock protein C
D XBJ1_4108 lsrR; putative transcriptional repressor with DNA-binding Winged helix domain K11531 lsrR; lsr operon transcriptional repressor
D XBJ1_3816 rnk; regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase
D XBJ1_1317 alpA; CP4-57 prophage; transcriptional acitvator of a P4-like cryptic prophage K07733 alpA; prophage regulatory protein
D XBJ1_2655 alpA; putative prophage regulatory protein K07733 alpA; prophage regulatory protein
D XBJ1_2671 putative phage-related protein K07733 alpA; prophage regulatory protein
D XBJ1_3366 alpA; CP4-57 prophage; transcriptional acitvator of a P4-like cryptic prophage K07733 alpA; prophage regulatory protein
D XBJ1_0706 Prophage CP4-57 regulatory K07733 alpA; prophage regulatory protein
D XBJ1_3339 conserved hypothetical protein K07735 algH; putative transcriptional regulator
D XBJ1_3667 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D XBJ1_1673 putative transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains K07738 nrdR; transcriptional repressor NrdR
D XBJ1_3297 crl; transcriptional regulator of cryptic genes for curli formation and fibronectin binding K11926 crl; sigma factor-binding protein Crl
D XBJ1_0414 rtcR; sigma N (sigma 54)-dependent transcriptional activator of RNA 3'-terminal phosphate cyclase (EBP familiy) K14414 rtcR; transcriptional regulatory protein RtcR
D XBJ1_3485 Protein mraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:xbo03021]
D XBJ1_4217 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D XBJ1_4054 rpoB; RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D XBJ1_4053 rpoC; RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D XBJ1_0234 rpoZ; RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D XBJ1_1834 rpoD; sigma D (sigma 70) factor of RNA polymerase K03086 rpoD; RNA polymerase primary sigma factor
D XBJ1_3581 rpoS; sigma S (sigma 38) factor of RNA polymerase, major sigma factor during stationary phase K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D XBJ1_3154 rpoE; sigma E (sigma 24) factor of RNA polymerase, response to periplasmic stress (TetR/ArcR family) K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D XBJ1_0556 rpoH; sigma H (sigma 32) factor of RNA polymerase; transcription of heat shock and stress proteins K03089 rpoH; RNA polymerase sigma-32 factor
D XBJ1_3823 rpoN; sigma N (sigma 54) factor of RNA polymerase K03092 rpoN; RNA polymerase sigma-54 factor
D XBJ1_1996 fliA; sigma F (sigma 28) factor of RNA polymerase, transcription of late flagellar genes (class 3a and 3b operons) K02405 fliA; RNA polymerase sigma factor FliA
D XBJ1_1796 hepA; ATPase associated with RNA polymerase and transcriptional activator K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
D XBJ1_0367 nusA; transcription pausing; L factor K02600 nusA; transcription termination/antitermination protein NusA
D XBJ1_1670 nusB; transcription termination; L factor K03625 nusB; transcription antitermination protein NusB
D XBJ1_4059 nusG; component in transcription antitermination K02601 nusG; transcription termination/antitermination protein NusG
D XBJ1_3846 sspA; stringent starvation protein A, regulator of transcription K03599 sspA; stringent starvation protein A
D XBJ1_3847 sspB; stringent starvation protein B K03600 sspB; stringent starvation protein B
D XBJ1_3153 rseA; anti sigma E (sigma 24) factor, negative regulator K03597 rseA; sigma-E factor negative regulatory protein RseA
D XBJ1_3152 rseB; anti sigma E (sigma 24) factor, negative regulator K03598 rseB; sigma-E factor negative regulatory protein RseB
D XBJ1_3151 rseC; regulator of sigma E (sigma 24) factor K03803 rseC; sigma-E factor negative regulatory protein RseC
D XBJ1_3667 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D XBJ1_0359 greA; transcription elongation factor, cleaves 3' nucleotide of paused mRNA K03624 greA; transcription elongation factor GreA
D XBJ1_0185 greB; transcription elongation factor and transcript cleavage K04760 greB; transcription elongation factor GreB
D XBJ1_4179 rho; transcription termination factor Rho; polarity suppressor K03628 rho; transcription termination factor Rho
D XBJ1_0608 rof; modulator of Rho-dependent transcription termination K19000 rof; Rho-binding antiterminator
C 03019 Messenger RNA biogenesis [BR:xbo03019]
D XBJ1_2867 rne; RNase E: endoribonuclease for rRNA processing and mRNA degradation K08300 rne; ribonuclease E [EC:3.1.26.12]
D XBJ1_3806 rng; RNase G (ribonuclease G) K08301 rng; ribonuclease G [EC:3.1.26.-]
D XBJ1_3148 rnc; RNase III, ds RNA K03685 rnc; ribonuclease III [EC:3.1.26.3]
D XBJ1_0327 rnr; RNase R, 3'-5' exoribonuclease K12573 rnr; ribonuclease R [EC:3.1.13.1]
D XBJ1_4132 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D XBJ1_4184 rhlB; putative ATP-dependent helicase with nucleoside triP hydrolase domain K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D XBJ1_0969 rhlE; putative ATP-dependent RNA helicase with P-loop hydrolase domain K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D XBJ1_0374 deaD; cold-shock DeaD box ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D XBJ1_4144 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D XBJ1_3651 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D XBJ1_0372 pnp; polynucleotide phosphorylase, has polyadenylase activity K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D XBJ1_4179 rho; transcription termination factor Rho; polarity suppressor K03628 rho; transcription termination factor Rho
D XBJ1_4302 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D XBJ1_1742 dnaK; chaperone Hsp70 in DNA biosynthesis/cell division K04043 dnaK; molecular chaperone DnaK
D XBJ1_3570 groL; chaperone Hsp60 (GroEL), part of GroE chaperone system K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D XBJ1_0321 hfq; host factor I for bacteriophage Q beta replication, plays a role in degradation of RNA transcripts K03666 hfq; host factor-I protein
D XBJ1_2069 ppk; polyphosphate kinase, component of RNA degradosome K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D XBJ1_3669 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D XBJ1_3688 nudH; nucleotide hydrolase, acts on adenosine(5')-pentaphospho-(5')-adenosine (Nudix family) K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D XBJ1_3285 csrA; carbon storage regulator, post-translational activator of flhDC expression, regulates biofilm formation, RNA-binding K03563 csrA; carbon storage regulator
D XBJ1_4287 menG; putative methyltransferase protein in menaquinone biosynthesis K02553 rraA; regulator of ribonuclease activity A
D XBJ1_0428 conserved hypothetical protein K09893 rraB; regulator of ribonuclease activity B
D XBJ1_3820 conserved hypothetical protein K06958 rapZ; RNase adapter protein RapZ
D XBJ1_2368 hrpA; helicase, ATP-dependent K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
D XBJ1_3665 hrpB; helicase, ATP-dependent K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:xbo03011]
D XBJ1_0814 rpsA; 30S ribosomal subunit protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D XBJ1_0589 rpsB; 30S ribosomal subunit protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D XBJ1_4235 rpsC; 30S ribosomal subunit protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D XBJ1_4218 rpsD; 30S ribosomal subunit protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D XBJ1_4224 rpsE; 30S ribosomal subunit protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D XBJ1_0329 rpsF; 30S ribosomal subunit protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D XBJ1_4064 rpsG; 30S ribosomal subunit protein S7, initiates assembly K02992 RP-S7; small subunit ribosomal protein S7
D XBJ1_4227 rpsH; 30S ribosomal subunit protein S8, and regulator K02994 RP-S8; small subunit ribosomal protein S8
D XBJ1_3845 rpsI; 30S ribosomal subunit protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D XBJ1_4242 rpsJ; 30S ribosomal subunit protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D XBJ1_4219 rpsK; 30S ribosomal subunit protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D XBJ1_4065 rpsL; 30S ribosomal subunit protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D XBJ1_4220 rpsM; 30S ribosomal subunit protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D XBJ1_4228 rpsN; 30S ribosomal subunit protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D XBJ1_0371 rpsO; 30S ribosomal subunit protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D XBJ1_3269 rpsP; 30S ribosomal subunit protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D XBJ1_4232 rpsQ; 30S ribosomal subunit protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D XBJ1_0331 rpsR; 30S ribosomal subunit protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D XBJ1_4237 rpsS; 30S ribosomal subunit protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D XBJ1_1729 rpsT; 30S ribosomal subunit protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D XBJ1_1832 rpsU; 30S ribosomal subunit protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D XBJ1_4057 rplA; 50S ribosomal subunit protein L1, regulates synthesis of L1 and L11 K02863 RP-L1; large subunit ribosomal protein L1
D XBJ1_4238 rplB; 50S ribosomal subunit protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D XBJ1_4241 rplC; 50S ribosomal subunit protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D XBJ1_4240 rplD; 50S ribosomal subunit protein L4, regulates expression of S10 operon K02926 RP-L4; large subunit ribosomal protein L4
D XBJ1_4229 rplE; 50S ribosomal subunit protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D XBJ1_4226 rplF; 50S ribosomal subunit protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D XBJ1_0332 rplI; 50S ribosomal subunit protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D XBJ1_4056 rplJ; 50S ribosomal subunit protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D XBJ1_4058 rplK; 50S ribosomal subunit protein L11, N-terminal believed to regulate RelA K02867 RP-L11; large subunit ribosomal protein L11
D XBJ1_4055 rplL; 50S ribosomal subunit protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D XBJ1_3844 rplM; 50S ribosomal subunit protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D XBJ1_4231 rplN; 50S ribosomal subunit protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D XBJ1_4222 rplO; 50S ribosomal subunit protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D XBJ1_4234 rplP; 50S ribosomal subunit protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D XBJ1_4216 rplQ; 50S ribosomal subunit protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D XBJ1_4225 rplR; 50S ribosomal subunit protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D XBJ1_3266 rplS; 50S ribosomal subunit protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D XBJ1_2542 rplT; 50S ribosomal subunit protein L20, also posttranslational autoregulator K02887 RP-L20; large subunit ribosomal protein L20
D XBJ1_0355 rplU; 50S ribosomal subunit protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D XBJ1_4236 rplV; 50S ribosomal subunit protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D XBJ1_4239 rplW; 50S ribosomal subunit protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D XBJ1_4230 rplX; 50S ribosomal subunit protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D XBJ1_0356 rpmA; 50S ribosomal subunit protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D XBJ1_4359 rpmB; 50S ribosomal subunit protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D XBJ1_4233 rpmC; 50S ribosomal subunit protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D XBJ1_4223 rpmD; 50S ribosomal subunit protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D XBJ1_4279 rpmE; 50S ribosomal subunit protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D XBJ1_2863 rpmF; 50S ribosomal subunit protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D XBJ1_4358 rpmG; 50S ribosomal subunit protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D XBJ1_4413 rpmH; 50S ribosomal subunit protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D XBJ1_2543 rpmI; 50S ribosomal subunit protein A K02916 RP-L35; large subunit ribosomal protein L35
D XBJ1_2898 rplY; 50S ribosomal subunit protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D XBJ1_0047 5S ribosomal RNA protein K01985 5SrRNA; 5S ribosomal RNA
D XBJ1_4012 5S ribosomal RNA protein K01985 5SrRNA; 5S ribosomal RNA
D XBJ1_4255 5S ribosomal RNA protein K01985 5SrRNA; 5S ribosomal RNA
D XBJ1_4200 5S ribosomal RNA protein K01985 5SrRNA; 5S ribosomal RNA
D XBJ1_0527 5S ribosomal RNA protein K01985 5SrRNA; 5S ribosomal RNA
D XBJ1_0629 5S ribosomal RNA protein K01985 5SrRNA; 5S ribosomal RNA
D XBJ1_3254 5S ribosomal RNA protein K01985 5SrRNA; 5S ribosomal RNA
D XBJ1_4254 5S ribosomal RNA protein K01985 5SrRNA; 5S ribosomal RNA
D XBJ1_rRNA0029 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XBJ1_rRNA0005 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XBJ1_rRNA0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XBJ1_rRNA0009 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XBJ1_rRNA0024 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XBJ1_rRNA0020 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XBJ1_rRNA0016 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XBJ1_rRNA0007 LSU_RRNA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XBJ1_rRNA0018 LSU_RRNA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XBJ1_rRNA0022 LSU_RRNA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XBJ1_rRNA0011 LSU_RRNA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XBJ1_rRNA0027 LSU_RRNA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XBJ1_rRNA0003 LSU_RRNA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XBJ1_rRNA0014 LSU_RRNA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:xbo03009]
D XBJ1_3148 rnc; RNase III, ds RNA K03685 rnc; ribonuclease III [EC:3.1.26.3]
D XBJ1_4132 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D XBJ1_3147 era; GTPase believed to be involved in coordination of cell cycle, energy metabolism, cell division K03595 era; GTPase
D XBJ1_0357 obgE; putative GTP-binding protein with nucleoside triP hydrolase domain K03979 obgE; GTPase [EC:3.6.5.-]
D XBJ1_3667 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D XBJ1_0367 nusA; transcription pausing; L factor K02600 nusA; transcription termination/antitermination protein NusA
D XBJ1_1670 nusB; transcription termination; L factor K03625 nusB; transcription antitermination protein NusB
D XBJ1_4059 nusG; component in transcription antitermination K02601 nusG; transcription termination/antitermination protein NusG
D XBJ1_2896 rsuA; 16S rRNA pseudouridylate 516 synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D XBJ1_1802 ksgA; S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, kasugamycin resistance K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D XBJ1_4212 rsmB; 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D XBJ1_3553 rsmC; 16S RNA m2G1207 methylase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D XBJ1_0551 yhhF; putative methyltransferase with SAM-dependent methyltransferase domain K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D XBJ1_3337 conserved hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D XBJ1_0030 gidB; glucose-inhibited division protein, contains S-adenosyl-L-methionine-dependent methyltransferase domain K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D XBJ1_3484 mraW; S-adenosyl-dependent methyl transferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D XBJ1_3861 yraL; putative enzyme with Cobalt precorrin-4 methyltransferase domain K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D XBJ1_0092 yhiQ; putative methyltransferase with SAM-dependent methyltransferase domain K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D XBJ1_2570 rrmA; 23S rRNA m1G745 methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D XBJ1_0328 putative tRNA/rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D XBJ1_0361 ftsJ; 23 S rRNA methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D XBJ1_3211 conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D XBJ1_4112 conserved hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D XBJ1_0787 ycbY; putative methyltransferase with S-adenosyl-L-methionine-dependent methyltransferase domain K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D XBJ1_0492 ygdE; putative RNA 2'-O-ribose methyltransferase, SAM-dependent domain K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D XBJ1_3011 yfgB; putative pyruvate formate lyase activating enzyme 2 K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D XBJ1_3655 rumA; 23S rRNA m5U1939 methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D XBJ1_0906 ybjF; putative tRNA (uracil-5-)-methyltransferase with S-adenosyl-L-methionine-dependent methyltransferase domain K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D XBJ1_1797 rluA; 23S rRNA pseudouridylate 746 synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D XBJ1_2282 Ribosomal large subunit pseudouridine synthase B (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D XBJ1_2866 rluC; 23S rRNA pseudouridylate synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D XBJ1_3259 rluD; pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA) K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D XBJ1_2829 Ribosomal large subunit pseudouridine synthase E (rRNA-uridine isomerase E) (rRNA pseudouridylate synthase E) K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D XBJ1_2224 Ribosomal large subunit pseudouridine synthase F (rRNA-uridine isomerase F) (rRNA pseudouridylate synthase F) K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D XBJ1_3248 yfiF; putative tRNA/rRNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D XBJ1_3551 rimI; modification of 30S ribosomal subunit protein S18; acetylation of N-terminal alanine K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D XBJ1_2218 rimJ; acetylation of N-terminal alanine of 30S ribosomal subunit protein S5 K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
D XBJ1_3268 rimM; 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM
D XBJ1_0819 conserved hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D XBJ1_3792 prmA; methylation of 50S ribosomal subunit protein L11 K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D XBJ1_2982 prmB; N5-glutamine methyltransferase, modifies ribosomal protein L3 K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D XBJ1_2837 ycfD; putative enzyme with RmlC-like domain K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D XBJ1_2867 rne; RNase E: endoribonuclease for rRNA processing and mRNA degradation K08300 rne; ribonuclease E [EC:3.1.26.12]
D XBJ1_3806 rng; RNase G (ribonuclease G) K08301 rng; ribonuclease G [EC:3.1.26.-]
D XBJ1_3340 putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D XBJ1_0374 deaD; cold-shock DeaD box ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D XBJ1_3156 srmB; ATP-dependent RNA helicase K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
D XBJ1_4131 yjeQ; putative enzyme with 2 nucleoside triP hydrolase domains K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D XBJ1_3003 der; GTP-binding protein, essential for cell growth K03977 engA; GTPase
D XBJ1_0322 hflX; putative GTPase subunit of protease with nucleoside triP hydrolase domain, together with HflC-HflK involved in stability of phage lambda cII repressor K03665 hflX; GTPase
D XBJ1_4207 yrdC; putative RNA-binding protein with unique protein fold, with YrdC/RibB domain K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D XBJ1_0233 spoT; bifunctional: (p)ppGpp synthetase II; guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D XBJ1_0369 rbfA; ribosome-binding factor, role in processing of 10S rRNA K02834 rbfA; ribosome-binding factor A
D XBJ1_0366 YhbC-like protein (fragment) K09748 rimP; ribosome maturation factor RimP
D XBJ1_1157 ybcJ; putative RNA-binding protein K14761 rlbA; ribosome-associated protein
D XBJ1_3210 conserved hypothetical protein K09710 ybeB; ribosome-associated protein
D XBJ1_3199 putative metal-dependent hydrolase K07042 ybeY; probable rRNA maturation factor
D XBJ1_0360 yhbY; putative RNA binding protein K07574 yhbY; RNA-binding protein
D XBJ1_3814 yjgA; putative transport protein (ABC superfamily, atp_bind) K09889 yjgA; ribosome-associated protein
D XBJ1_0782 rmf; ribosome modulation factor K03812 rmf; ribosome modulation factor
D XBJ1_3822 yhbH; putative sigma N (sigma 54) modulator K05808 hpf; ribosome hibernation promoting factor
D XBJ1_3261 yfiA; ribosome associated factor, stabilizes ribosomes against dissociation K05809 raiA; ribosome-associated inhibitor A
D XBJ1_2194 ychF; putative GTP-binding protein with nucleoside triP hydrolase domain K06942 ychF; ribosome-binding ATPase
D XBJ1_2864 conserved hypothetical protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:xbo03016]
D XBJ1_0413 elaC; binuclear zinc phosphodiesterase K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D XBJ1_1827 cca; tRNA nucleotidyl transferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D XBJ1_0417 rtcB; putative PLP-dependent transferase K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D XBJ1_3116 gltX; glutamate tRNA synthetase, catalytic subunit K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D XBJ1_0610 proS; proline tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D XBJ1_2166 putative Proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D XBJ1_1726 ileS; isoleucine tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D XBJ1_2165 leuS; leucine tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D XBJ1_3206 leuS; leucine tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D XBJ1_0935 metG; methionine tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D XBJ1_1110 glnS; glutamine tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D XBJ1_2222 argS; arginine tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D XBJ1_3421 lysS; lysine tRNA synthetase, constitutive K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D XBJ1_2140 putative Lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D XBJ1_2262 aspS; aspartate tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D XBJ1_3286 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D XBJ1_0483 putative Predicted metal-dependent hydrolases K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D XBJ1_2159 putative Asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D XBJ1_0793 asnS; asparagine tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D XBJ1_2545 thrS; threonine tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D XBJ1_0886 serS; serine tRNA synthetase; also charges selenocystein tRNA with serine K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D XBJ1_3093 cysS; cysteine tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D XBJ1_0444 valS; valine tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D XBJ1_3006 hisS; histidine tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D XBJ1_2541 pheS; phenylalanine tRNA synthetase, alpha-subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D XBJ1_2540 pheT; phenylalanine tRNA synthetase, beta-subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D XBJ1_2486 tyrS; tyrosine tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D XBJ1_0052 trpS; tryptophan tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D XBJ1_0226 dtd; D-Tyr-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D XBJ1_2849 ycfF; putative inhibitor of protein kinase C, contains a transferase domain K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D XBJ1_3351 yggH; tRNA (m7G46) methyltransferase, SAM-dependent K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D XBJ1_0611 conserved hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D XBJ1_2965 truA; pseudouridylate synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D XBJ1_0370 truB; tRNA pseudouridine 5S synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D XBJ1_3601 truD; putative hydrogenase subunit K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D XBJ1_3028 iscS; cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D XBJ1_4207 yrdC; putative RNA-binding protein with unique protein fold, with YrdC/RibB domain K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D XBJ1_0320 miaA; delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D XBJ1_4409 mnmE; GTPase involved in tRNA modification and in thiophene and furan oxidation K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D XBJ1_0031 gidA; glucose-inhibited division protein, oxidoreductase-like with FAD/NAD(P)-binding domain K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D XBJ1_0334 cysQ; protein that acts on 3'-phosphoadenosine-5'-phosphosulfate with sugar phosphatase domain K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D XBJ1_4412 rnpA; RNase P, protein C5 component, processes tRNA, 4.5S RNA K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D XBJ1_2492 rnt; RNase T, degrades tRNA, has exonuclease and ssDNAse activity K03683 rnt; ribonuclease T [EC:3.1.13.-]
D XBJ1_4366 rph; RNase PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D XBJ1_2302 rnb; RNase II, mRNA degradation K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D XBJ1_2398 rnd; RNase D, processes tRNA precursor K03684 rnd; ribonuclease D [EC:3.1.13.5]
D XBJ1_0419 kptA; 2'-phosphotransferase K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-]
D XBJ1_3525 yjjK; putative transport protein (ABC superfamily, atp_bind) K06020 ettA; energy-dependent translational throttle protein EttA
D XBJ1_0243 glyQ; glycine tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D XBJ1_0244 glyS; glycine tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D XBJ1_3668 yadB; putative glutamyl t-RNA synthetase with nucleotidylyl transferase domain K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D XBJ1_1597 Protein ybaK K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D XBJ1_3042 tadA; TadA, tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D XBJ1_3925 dusA; tRNA-dihydrouridine synthase A K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D XBJ1_3791 dusB; tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D XBJ1_0968 dusC; tRNA-dihydrouridine synthase C K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
D XBJ1_3197 miaB; involved in methylthiolation of isopentenylated A37 derivatives in tRNA, Fe-S protein K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D XBJ1_2260 yecO; putative methyltransferase with S-adenosyl-L-methionine-dependent methyltransferase domain K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D XBJ1_2259 yecP; putative methyltransferase with S-adenosyl-L-methionine-dependent methyltransferase domain K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D XBJ1_0805 smtA; S-adenosylmethionine-dependent methyltransferase K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-]
D XBJ1_4262 trmA; tRNA (uracil-5-)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D XBJ1_3267 trmD; tRNA (guanine-7-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D XBJ1_3248 yfiF; putative tRNA/rRNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D XBJ1_3030 yfhQ; putative methyl transferase in Fe-S cluster assembly K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D XBJ1_4329 yibK; putative tRNA/rRNA methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D XBJ1_3155 yfiC; putative methyltransferase with S-adenosyl-L-methionine-dependent methyltransferase domain K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D XBJ1_0583 truC; pseudouridine synthase K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
D XBJ1_1797 rluA; 23S rRNA pseudouridylate 746 synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D XBJ1_2831 mnmA; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D XBJ1_2463 conserved hypothetical protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D XBJ1_0548 sirA; small ubiquitous RNA-binding protein required for normal growth, cytoplasmic K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D XBJ1_4066 conserved hypothetical protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D XBJ1_4067 conserved hypothetical protein K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D XBJ1_4068 putative intracellular sulfur oxidation protein (DsrE-like) K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D XBJ1_0761 yccK; putative anaerobic sulfite reductase gamma subunit K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D XBJ1_3026 iscA; putative regulator believed to be involved in Fe-S cluster assembly and activation K13628 iscA; iron-sulfur cluster assembly protein
D XBJ1_3430 ygfZ; putative enzyme K06980 ygfZ; tRNA-modifying protein YgfZ
D XBJ1_2976 putative peptidase K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D XBJ1_1680 queA; S-adenosylmethionine:tRNA (m6t6A37) ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D XBJ1_1630 ybaX; putative (aluminum) resistance protein with adenine nucleotide alpha hydrolase domain K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D XBJ1_3613 sscR; putative synthase with tetrahydrobiopterin biosynthesis-like domain K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D XBJ1_3614 ygcF; putative coenzyme PQQ synthesis protein with nitrogenase iron-molybdenum domain K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D XBJ1_0578 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D XBJ1_0316 putative electron transport protein yjeS K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D XBJ1_1402 conserved hypothetical protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D XBJ1_1679 tgt; tRNA-guanine transglycosylase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D XBJ1_1656 thiI; sulfur transfer protein (from cys to ThiS and from IscS to U8-tRNA) K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D XBJ1_0607 tilS; TilS, tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D XBJ1_2598 ypfI; putative acyl-CoA N-acyltransferase with nucleoside triphosphate hydrolase K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
D XBJ1_2238 yeaZ; putative glycoprotein endopeptidase, actin-like ATPase domain K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D XBJ1_1831 ygjD; putative O-sialoglycoprotein endopeptidase, with actin-like ATPase domain K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D XBJ1_0317 yjeE; putative enzyme with nucleoside triP hydrolase domain K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D XBJ1_3707 ygdL; putative Molybdenum cofactor biosynthesis protein MoeB, NAD(P)-binding K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D XBJ1_0327 rnr; RNase R, 3'-5' exoribonuclease K12573 rnr; ribonuclease R [EC:3.1.13.1]
D XBJ1_0372 pnp; polynucleotide phosphorylase, has polyadenylase activity K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:xbo03012]
D XBJ1_2300 Protein yciH K03113 EIF1; translation initiation factor 1
D XBJ1_0368 infB; protein chain initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D XBJ1_2544 protein chain initiation factor IF-3 (fragment) K02520 infC; translation initiation factor IF-3
D XBJ1_4077 yheS; putative transport protein (ABC superfamily, atp_bind) K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D XBJ1_0590 tsf; protein chain elongation factor EF-Ts K02357 tsf; elongation factor Ts
D XBJ1_4062 tufA; protein chain elongation factor EF-Tu (duplicate of tufB) K02358 tuf; elongation factor Tu
D XBJ1_4247 tufB; putative protein chain elongation factor EF-Tu; GTP-binding factor (duplicate of tufA) K02358 tuf; elongation factor Tu
D XBJ1_4063 fusA; protein chain elongation factor EF-G, GTP-binding K02355 fusA; elongation factor G
D XBJ1_2202 prfA; peptide chain release factor RF-1 K02835 prfA; peptide chain release factor 1
D XBJ1_0592 frr; ribosome releasing factor K02838 frr; ribosome recycling factor
D XBJ1_2203 prmC; N5-glutamine methyltransferase, modifies release factors RF-1 and RF-2 K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D XBJ1_2195 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D XBJ1_0897 infA; protein chain initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D XBJ1_3567 efp; elongation factor P (EF-P) K02356 efp; elongation factor P
D XBJ1_2888 yeiP; putative elongation factor K02356 efp; elongation factor P
D XBJ1_0539 poxA; putative lysyl-tRNA synthetase with Class II aaRS and biotin synthetase domains K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-]
D XBJ1_3568 yjeK; putative aminomutase K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-]
D XBJ1_2979 putative transporting ATPase K09906 epmC; elongation factor P hydroxylase [EC:1.14.-.-]
D XBJ1_3422 prfB; peptide chain release factor RF-2 K02836 prfB; peptide chain release factor 2
D XBJ1_3549 prfC; putative peptide chain release factor RF-3; GTP-binding factor K02837 prfC; peptide chain release factor 3
D XBJ1_2751 putative peptide chain release factor (modular protein) K02839 prfH; peptide chain release factor
D XBJ1_4214 conserved hypothetical protein K09890 arfA; alternative ribosome-rescue factor
C 03110 Chaperones and folding catalysts [BR:xbo03110]
D XBJ1_0898 clpA; ATP-dependent specificity subunit of clpA-clpP serine protease K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D XBJ1_3257 clpB; ATP-dependent protease, Hsp 100, part of multi-chaperone system with DnaK, DnaJ, and GrpE K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D XBJ1_1636 clpX; ATPase, chaperone subunit of serine protease K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D XBJ1_4285 hslU; ATPase component of the HslUV protease, also functions as molecular chaperone K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D XBJ1_1606 htpG; chaperone Hsp90, heat shock protein C 62.5 K04079 HSP90A; molecular chaperone HtpG
D XBJ1_1742 dnaK; chaperone Hsp70 in DNA biosynthesis/cell division K04043 dnaK; molecular chaperone DnaK
D XBJ1_3024 hscA; chaperone (Hsp70 family), believed to be involved in assembly of Fe-S clusters K04044 hscA; molecular chaperone HscA
D XBJ1_3570 groL; chaperone Hsp60 (GroEL), part of GroE chaperone system K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D XBJ1_1741 dnaJ; heat shock protein (Hsp40), co-chaperone with DnaK K03686 dnaJ; molecular chaperone DnaJ
D XBJ1_1798 djlA; co-chaperone of DnbaK (DnaJ-like), implicated in regulation of colanic acid capsule K05801 djlA; DnaJ like chaperone protein
D XBJ1_3025 hscB; co-chaperone protein Hsc20, believed to be involved in assembly of Fe-S clusters K04082 hscB; molecular chaperone HscB
D XBJ1_0070 hslO; heat shock protein 33, redox regulated chaperone K04083 hslO; molecular chaperone Hsp33
D XBJ1_3159 grpE; Hsp 24 nucleotide exchange factor K03687 GRPE; molecular chaperone GrpE
D XBJ1_0069 hslR; heat shock protein 15, DNA/RNA-binding K04762 hslR; ribosome-associated heat shock protein Hsp15
D XBJ1_3571 groS; chaperone Hsp10 (GroES), part of GroE chaperone system K04078 groES; chaperonin GroES
D XBJ1_0362 ftsH; ATP-dependent zinc-metallo protease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D XBJ1_0028 atpB; membrane-bound ATP synthase, F0 sector, subunit a, important for FO assembly K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D XBJ1_4332 secB; molecular chaperone in protein export, enhances activity of SecA (General Secretory Pathway) K03071 secB; preprotein translocase subunit SecB
D XBJ1_4310 Periplasmic protein K06006 cpxP; periplasmic protein CpxP/Spy
D XBJ1_1706 hypB; hydrogenase-3 accessory protein for metallocenter assembly with P-loop containing NTP hydrolase domain K04652 hypB; hydrogenase nickel incorporation protein HypB
D XBJ1_1109 Chitobiase (Precursor) K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D XBJ1_4092 ppiA; peptidyl-prolyl cis-trans isomerase A (rotamase A) K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D XBJ1_3094 ppiB; peptidyl-prolyl cis-trans isomerase B (rotamase B) K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D XBJ1_1633 ppiD; peptidyl-prolyl cis-trans isomerase, for periplasmic folding of outer membrane proteins K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D XBJ1_4070 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D XBJ1_0333 fklB; FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase) K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D XBJ1_1724 fkpB; FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8]
D XBJ1_4072 slyD; FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D XBJ1_1800 surA; peptidyl-prolyl cis-trans isomerase (PPIase), involved in maturation of outer membrane proteins K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D XBJ1_4182 trxA; thioredoxin 1, redox factor K03671 TXN; thioredoxin
D XBJ1_1591 ybbN; putative thioredoxin protein with protein prenylyltransferase K05838 ybbN; putative thioredoxin
D XBJ1_0909 grxA; glutaredoxin 1 redox coenzyme for glutathione-dependent ribonucleotide reductase K03674 grxA; glutaredoxin 1
D XBJ1_2493 putative monothiol glutaredoxin ydhD K07390 grxD; monothiol glutaredoxin
D XBJ1_4097 dsbA; periplasmic protein disulfide isomerase I, disulfide bond formation K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D XBJ1_2460 dsbB; disulfide bond formation proteins (oxidoreductase) with quinone as electron acceptor, reoxidizes DsbA K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D XBJ1_3424 dsbC; protein disulfide isomerase II, activated by N-terminal of DsbD K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D XBJ1_1456 dipZ; thiol:disulfide interchange protein, cytochrome c-type biogenesis, electron carrier, N-terminal interacts with and activates DsbC K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
C 04131 Membrane trafficking [BR:xbo04131]
D XBJ1_3013 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D XBJ1_2452 gapA; glyceraldehyde-3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D XBJ1_1038 gpmA; phosphoglyceromutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D XBJ1_2503 pykF; pyruvate kinase I (formerly F), fructose-stimulated K00873 PK; pyruvate kinase [EC:2.7.1.40]
D XBJ1_2231 pykA; pyruvate kinase II, glucose-stimulated K00873 PK; pyruvate kinase [EC:2.7.1.40]
D XBJ1_1606 htpG; chaperone Hsp90, heat shock protein C 62.5 K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system [BR:xbo04121]
C 03051 Proteasome [BR:xbo03051]
D XBJ1_1606 htpG; chaperone Hsp90, heat shock protein C 62.5 K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:xbo03032]
D XBJ1_3074 rnhA; RNase HI, degrades RNA of DNA-RNA hybrids K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D XBJ1_4021 hupA; DNA-binding protein HU-alpha (HU-2), plays a role in DNA replication and in rpo translation K05787 hupA; DNA-binding protein HU-alpha
D XBJ1_1634 hupB; DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation K03530 hupB; DNA-binding protein HU-beta
D XBJ1_2539 ihfA; integration host factor (IHF), alpha subunit, DNA-bending protein, DNA replication K04764 ihfA; integration host factor subunit alpha
D XBJ1_0813 ihfB; integration host factor (IHF), beta subunit, site-specific recombination K05788 ihfB; integration host factor subunit beta
D XBJ1_0001 dnaA; DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes K02313 dnaA; chromosomal replication initiator protein
D XBJ1_1554 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D XBJ1_1190 Replicative DNA helicase (Replication protein gp12) K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D XBJ1_1251 Replicative DNA helicase (Replication protein gp12) K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D XBJ1_3370 dnaB; replicative DNA helicase; chromosome replication; chain elongation K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D XBJ1_3913 dnaB; replicative DNA helicase; chromosome replication; chain elongation K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D XBJ1_0468 chromosome replication (initiation and chain elongation) with nucleoside triP hydrolase domain (fragment) K02315 dnaC; DNA replication protein DnaC
D XBJ1_1250 conserved hypothetical protein K02315 dnaC; DNA replication protein DnaC
D XBJ1_1833 dnaG; DNA biosynthesis; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D XBJ1_3902 ssb; ssDNA-binding protein controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein
D XBJ1_3380 ssb; ssDNA-binding protein controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein
D XBJ1_1171 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XBJ1_1545 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XBJ1_0604 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D XBJ1_0002 dnaN; DNA polymerase III, beta-subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D XBJ1_0445 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D XBJ1_3208 holA; DNA polymerase III, delta subunit, probably ATP hydrolase K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D XBJ1_2851 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D XBJ1_0654 putative DNA-directed DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D XBJ1_3075 dnaQ; DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D XBJ1_1611 dnaX; DNA polymerase III, tau and gamma subunits; DNA elongation factor III K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D XBJ1_3552 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D XBJ1_2558 holE; DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D XBJ1_0603 rnhB; RNAse HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D XBJ1_4096 polA; multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) K02335 polA; DNA polymerase I [EC:2.7.7.7]
D XBJ1_0236 DNA ligase (modular protein) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D XBJ1_3119 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D XBJ1_2317 tus; replication termination protein K10748 tus; DNA replication terminus site-binding protein
D XBJ1_0055 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D XBJ1_1075 seqA; negative modulator of replication initiation K03645 seqA; negative modulator of initiation of replication
D XBJ1_2624 hda; regulatory factor involved in inactivation of DnaA K10763 hda; DnaA-homolog protein
D XBJ1_0730 gyrA; DNA gyrase, subunit A, type II topoisomerase K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D XBJ1_0004 gyrB; DNA gyrase, subunit B (type II topoisomerase) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D XBJ1_1809 parC; DNA topoisomerase IV, subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D XBJ1_1810 parE; DNA topoisomerase IV, subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D XBJ1_2289 topA; DNA topoisomerase type I, omega protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D XBJ1_1548 topB; DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
D XBJ1_2443 topB; DNA topoisomerase III, type 1 K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
D XBJ1_3377 DNA topoisomerase 3 (DNA topoisomerase III) K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:xbo03036]
D XBJ1_3148 rnc; RNase III, ds RNA K03685 rnc; ribonuclease III [EC:3.1.26.3]
D XBJ1_2432 hns; transcriptional regulator, DNA-binding protein HLP-II (HU, BH2, HD, NS), increases DNA thermal stability K03746 hns; DNA-binding protein H-NS
D XBJ1_4021 hupA; DNA-binding protein HU-alpha (HU-2), plays a role in DNA replication and in rpo translation K05787 hupA; DNA-binding protein HU-alpha
D XBJ1_1634 hupB; DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation K03530 hupB; DNA-binding protein HU-beta
D XBJ1_2539 ihfA; integration host factor (IHF), alpha subunit, DNA-bending protein, DNA replication K04764 ihfA; integration host factor subunit alpha
D XBJ1_0813 ihfB; integration host factor (IHF), beta subunit, site-specific recombination K05788 ihfB; integration host factor subunit beta
D XBJ1_3520 rob; transcriptional activator for resistance to antibiotics, organic solvents and heavy metals (AraC/XylS family) (right origin-binding protein) K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D XBJ1_0001 dnaA; DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes K02313 dnaA; chromosomal replication initiator protein
D XBJ1_3858 yraO; putative phosphoheptose isomerase with phosphosugar-binding domain K12961 diaA; DnaA initiator-associating protein
D XBJ1_0764 conserved hypothetical protein K11940 hspQ; heat shock protein HspQ
D XBJ1_0962 dps; stress response DNA-binding protein with ferritin-like domain K04047 dps; starvation-inducible DNA-binding protein
D XBJ1_3790 fis; DNA-binding protein for site-specific recombination and inversion, transcription of rRNA and tRNA operons, and DNA replication K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D XBJ1_0321 hfq; host factor I for bacteriophage Q beta replication, plays a role in degradation of RNA transcripts K03666 hfq; host factor-I protein
D XBJ1_3446 argP; inhibitor of replication initiation; transcriptional regulator of dnaA and argK (LysR family) K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D XBJ1_0890 lrp; transcriptional regulator of lrp regulon and for high-affinity branched-chain amino acid transport system (AsnC family) K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D XBJ1_2899 yejK; nucleotide associated protein, present in spermidine nucleoids K06899 ndpA; nucleoid-associated protein
D XBJ1_0802 mukB; kinesin-like cell division protein involved in sister chromosome partitioning K03632 mukB; chromosome partition protein MukB
D XBJ1_0803 mukE; putative killing protein suppressor K03804 mukE; chromosome partition protein MukE
D XBJ1_0804 mukF; mukF protein (killing factor KICB) K03633 mukF; chromosome partition protein MukF
D XBJ1_3472 ftsA; cell division protein with ATPase domain, involved in recruitment of FtsK to Z ring K03590 ftsA; cell division protein FtsA
D XBJ1_3604 ftsB; cell division protein K05589 ftsB; cell division protein FtsB
D XBJ1_0554 ftsE; putative transport protein (ABC superfamily, atp_bind) K09812 ftsE; cell division transport system ATP-binding protein
D XBJ1_3482 ftsI; division-specific transpeptidase, penicillin-binding protein 3 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D XBJ1_0889 putative cell division protein, required for chromosome partitioning (FstK) K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D XBJ1_3483 ftsL; cell division protein; ingrowth of wall at septum K03586 ftsL; cell division protein FtsL
D XBJ1_4283 ftsN; essential cell division protein, epimerase-or mutase-like K03591 ftsN; cell division protein FtsN
D XBJ1_3473 ftsQ; cell division protein; ingrowth of wall at septum K03589 ftsQ; cell division protein FtsQ
D XBJ1_3477 ftsW; essential cell division gene, stablilzes FtsZ ring, required for PBP2 expression K03588 ftsW; cell division protein FtsW
D XBJ1_0555 ftsX; integral membrane cell division protein K09811 ftsX; cell division transport system permease protein
D XBJ1_3471 ftsZ; tubulin-like GTP-binding protein and GTPase, forms circumferential ring in cell division K03531 ftsZ; cell division protein FtsZ
D XBJ1_3120 zipA; cell division protein involved in FtsK recruitment to Z ring K03528 zipA; cell division protein ZipA
D XBJ1_3441 conserved hypothetical protein K09888 zapA; cell division protein ZapA
D XBJ1_4288 conserved hypothetical protein K09892 zapB; cell division protein ZapB
D XBJ1_0789 conserved hypothetical protein K18657 zapC; cell division protein ZapC
D XBJ1_3463 conserved hypothetical protein K18778 zapD; cell division protein ZapD
D XBJ1_3843 yhcM; putative ATPase, with nucleoside triP hydrolase domain K06916 zapE; cell division protein ZapE
D XBJ1_0318 amiB; N-acetylmuramoyl-l-alanine amidase II, a murein hydrolase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D XBJ1_3703 amiC; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D XBJ1_1617 acrA; component of acridine efflux pump K03585 acrA; membrane fusion protein, multidrug efflux system
D XBJ1_2383 minC; cell division inhibitor, inhibits FtsZ ring formation K03610 minC; septum site-determining protein MinC
D XBJ1_2384 minD; cell division inhibitor, membrane ATPase, activates MinC K03609 minD; septum site-determining protein MinD
D XBJ1_2385 minE; cell division topological specificity factor, reverses MinC inhibition of FtsZ ring formation K03608 minE; cell division topological specificity factor
D XBJ1_0777 Cell division inhibitor SulA K13053 sulA; cell division inhibitor SulA
D XBJ1_4364 ttk; putative transcriptional regulator of dUTPase subunit with homeodomain-like DNA binding domain (TetR/AcrR family) K05501 slmA; TetR/AcrR family transcriptional regulator
D XBJ1_1075 seqA; negative modulator of replication initiation K03645 seqA; negative modulator of initiation of replication
D XBJ1_3802 mreB; split gene in K-12 with ATPase domain, associated with mecillinam resistance, cell shape K03569 mreB; rod shape-determining protein MreB and related proteins
D XBJ1_3803 mreC; rod shape-determining protein K03570 mreC; rod shape-determining protein MreC
D XBJ1_3804 mreD; rod shape-determining protein K03571 mreD; rod shape-determining protein MreD
D XBJ1_3213 mrdB; rod shape-determining membrane protein; cell elongation K05837 rodA; rod shape determining protein RodA
D XBJ1_1809 parC; DNA topoisomerase IV, subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D XBJ1_1810 parE; DNA topoisomerase IV, subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D XBJ1_0031 gidA; glucose-inhibited division protein, oxidoreductase-like with FAD/NAD(P)-binding domain K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D XBJ1_0030 gidB; glucose-inhibited division protein, contains S-adenosyl-L-methionine-dependent methyltransferase domain K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D XBJ1_4153 xerC; site-specific tyrosine recombinase K03733 xerC; integrase/recombinase XerC
D XBJ1_3425 xerD; site-specific tyrosine recombinase K04763 xerD; integrase/recombinase XerD
D XBJ1_2355 Integrase/recombinase K04763 xerD; integrase/recombinase XerD
D XBJ1_0934 mrp; putative ATP-binding protein with nucleotide triphosphate hydrolase domain K03593 mrp; ATP-binding protein involved in chromosome partitioning
D XBJ1_4093 yihA; putative GTPase with nucleoside triP hydrolase domain, involved in coordination of cell cycle K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:xbo03400]
D XBJ1_3222 ogt; methylated-DNA--protein-cysteine methyltransferase (6-O-methylguanine-DNA methyltransferase) (O-6-methylguanine-DNA-alkyltransferase) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D XBJ1_3158 ung; uracil-DNA-glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D XBJ1_3352 mutY; adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D XBJ1_2303 nth; endonuclease III; DNA glycosylase/apyrimidinic (AP) lyase, acts on 5-formyluracil and 5-hydroxymethyluracil K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D XBJ1_3465 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D XBJ1_2886 Nudix hydrolase 1 (AtNUDT1) (NADH pyrophosphatase) (DHNTP pyrophosphohydrolase) (Dihydroneopterin triphosphate pyrophosphohydrolase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D XBJ1_4363 dut; deoxyuridinetriphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D XBJ1_3045 putative DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D XBJ1_0242 tag; 3-methyl-adenine DNA glycosylase I, constitutive K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D XBJ1_4352 mutM; formamidopyrimidine DNA glycosylase, also acts on 5-formyluracil and 5-hydroxymethyluracil K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D XBJ1_2442 xthA; exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D XBJ1_2883 nfo; endonuclease IV, with intrinsic 3'-5' exonuclease activity K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D XBJ1_4023 nfi; endonuclease V (deoxyinosine 3'endoduclease) K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D XBJ1_3423 recJ; ssDNA exonuclease, 5'--> 3'-specific, Mg-dependent K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D XBJ1_0236 DNA ligase (modular protein) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D XBJ1_3119 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D XBJ1_4096 polA; multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) K02335 polA; DNA polymerase I [EC:2.7.7.7]
D XBJ1_3903 uvrA; DNA excision repair enzyme subunit, with UvrBC K03701 uvrA; excinuclease ABC subunit A
D XBJ1_0981 uvrB; ATP-dependent DNA excision repair enzyme UvrAC K03702 uvrB; excinuclease ABC subunit B
D XBJ1_2675 uvrC; DNA exisiton repair enzyme together with UvrAB K03703 uvrC; excinuclease ABC subunit C
D XBJ1_4151 uvrD; DNA-dependent ATPase I and helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D XBJ1_4054 rpoB; RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D XBJ1_4053 rpoC; RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D XBJ1_4217 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D XBJ1_0234 rpoZ; RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D XBJ1_2843 mfd; transcription-repair ATP-dependent coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D XBJ1_3579 mutS; methyl-directed mismatch repair, recognizes exocyclic adducts of guanosine K03555 mutS; DNA mismatch repair protein MutS
D XBJ1_0319 mutL; enzyme in methyl-directed mismatch repair, stimulates binding of Vsr and MutS to heteroduplex DNA K03572 mutL; DNA mismatch repair protein MutL
D XBJ1_3495 mutH; putative methyl-directed mismatch repair protein with restriction endonuclease-like domain K03573 mutH; DNA mismatch repair protein MutH
D XBJ1_2870 sbcB; exonuclease I, 3'--> 5'-specific; deoxyribophosphodiesterase K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D XBJ1_2585 xseA; exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D XBJ1_1657 xseB; exonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D XBJ1_0604 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D XBJ1_0002 dnaN; DNA polymerase III, beta-subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D XBJ1_0445 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D XBJ1_3208 holA; DNA polymerase III, delta subunit, probably ATP hydrolase K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D XBJ1_2851 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D XBJ1_0654 putative DNA-directed DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D XBJ1_3075 dnaQ; DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D XBJ1_1611 dnaX; DNA polymerase III, tau and gamma subunits; DNA elongation factor III K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D XBJ1_3552 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D XBJ1_2558 holE; DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D XBJ1_3902 ssb; ssDNA-binding protein controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein
D XBJ1_3380 ssb; ssDNA-binding protein controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein
D XBJ1_1171 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XBJ1_1545 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XBJ1_0055 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D XBJ1_3699 recB; exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D XBJ1_3697 recC; exonuclease V, gamma chain with recB and recD: 5' and 3' nuclease, ATPase, recombinase, helicase K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D XBJ1_3700 recD; exonuclease V, alpha chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D XBJ1_3287 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA
D XBJ1_2266 ruvA; Holliday junction helicase, subunit A K03550 ruvA; holliday junction DNA helicase RuvA
D XBJ1_2267 ruvB; Holliday junction helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D XBJ1_2265 ruvC; Holliday junction nuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D XBJ1_1196 rusA; DLP12 prophage; endodeoxyribonuclease RUS (Holliday junction resolvase) K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
D XBJ1_4280 priA; primosomal protein N' (factor Y) directs replication fork assembly at D-loops, ATP-dependent K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D XBJ1_0330 priB; primosomal replication protein N K02686 priB; primosomal replication protein N
D XBJ1_1613 priC; primosomal replication protein N'' K04067 priC; primosomal replication protein N''
D XBJ1_1690 sbcC; ATP-dependent dsDNA exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50
D XBJ1_1689 sbcD; ATP-dependent dsDNA exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11
D XBJ1_3528 radA; putative ATP-dependent protease, with nucleoside triP hydrolase and multiheme cytochrome domains, DNA repair protein K04485 radA; DNA repair protein RadA/Sms
D XBJ1_0003 recF; gap repair protein with nucleoside triP hydrolase domain, part of RecFOR complex that targets RecA to ssDNA-dsDNA junction K03629 recF; DNA replication and repair protein RecF
D XBJ1_0231 recG; DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D XBJ1_3146 recO; gap repair protein, part of RecFOR complex that targets RecA to ssDNA-dsDNA junction K03584 recO; DNA repair protein RecO (recombination protein O)
D XBJ1_1609 recR; gap repair protein with type I DNA topoisomerase domain, part of RecFOR complex that targets RecA to ssDNA-dsDNA junction K06187 recR; recombination protein RecR
D XBJ1_3161 recN; protein used in recombination and DNA repair with nucleoside triphosphate hydrolase domain K03631 recN; DNA repair protein RecN (Recombination protein N)
D XBJ1_1703 rdgC; putative ribonuclease involved in removal of stalled replication fork with Rh-like domain K03554 rdgC; recombination associated protein RdgC
D XBJ1_3755 conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1
D XBJ1_2897 yejH; putative ATP-dependent helicase with nucleoside triP hydrolase domain K19789 radD; DNA repair protein RadD
D XBJ1_0730 gyrA; DNA gyrase, subunit A, type II topoisomerase K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D XBJ1_0004 gyrB; DNA gyrase, subunit B (type II topoisomerase) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D XBJ1_2289 topA; DNA topoisomerase type I, omega protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D XBJ1_4021 hupA; DNA-binding protein HU-alpha (HU-2), plays a role in DNA replication and in rpo translation K05787 hupA; DNA-binding protein HU-alpha
D XBJ1_1634 hupB; DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation K03530 hupB; DNA-binding protein HU-beta
D XBJ1_3790 fis; DNA-binding protein for site-specific recombination and inversion, transcription of rRNA and tRNA operons, and DNA replication K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D XBJ1_2539 ihfA; integration host factor (IHF), alpha subunit, DNA-bending protein, DNA replication K04764 ihfA; integration host factor subunit alpha
D XBJ1_0813 ihfB; integration host factor (IHF), beta subunit, site-specific recombination K05788 ihfB; integration host factor subunit beta
D XBJ1_4144 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D XBJ1_2432 hns; transcriptional regulator, DNA-binding protein HLP-II (HU, BH2, HD, NS), increases DNA thermal stability K03746 hns; DNA-binding protein H-NS
D XBJ1_3302 dinB; DNA polymerase IV, devoid of proofreading, damage-inducible protein P K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D XBJ1_3997 lexA; transcriptional repressor for SOS response (signal peptidase of LexA family) K01356 lexA; repressor LexA [EC:3.4.21.88]
D XBJ1_1795 polB; DNA polymerase II and 3'-> 5' exonuclease K02336 polB; DNA polymerase II [EC:2.7.7.7]
D XBJ1_4382 dinD; DNA-damage-inducible protein, part of SOS response K14623 dinD; DNA-damage-inducible protein D
D XBJ1_1391 DinI-like protein in retron EC67 K12149 dinI; DNA-damage-inducible protein I
D XBJ1_4186 rep; Rep helicase, a single-stranded DNA-dependent ATPase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D XBJ1_0766 helD; DNA helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4]
D XBJ1_0964 dinG; LexA-regulated (SOS) repair enzyme K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D XBJ1_2237 yoaA; putative ATP-dependent helicase with nucleotide triphosphate hydrolase domain, SOS repair K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D XBJ1_0728 nrdA; ribonucleoside diphosphate reductase 1, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D XBJ1_0727 nrdB; ribonucleoside-diphosphate reductase 1, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:xbo03029]
D XBJ1_0368 infB; protein chain initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D XBJ1_2544 protein chain initiation factor IF-3 (fragment) K02520 infC; translation initiation factor IF-3
D XBJ1_0590 tsf; protein chain elongation factor EF-Ts K02357 tsf; elongation factor Ts
D XBJ1_4062 tufA; protein chain elongation factor EF-Tu (duplicate of tufB) K02358 tuf; elongation factor Tu
D XBJ1_4247 tufB; putative protein chain elongation factor EF-Tu; GTP-binding factor (duplicate of tufA) K02358 tuf; elongation factor Tu
D XBJ1_4063 fusA; protein chain elongation factor EF-G, GTP-binding K02355 fusA; elongation factor G
D XBJ1_3147 era; GTPase believed to be involved in coordination of cell cycle, energy metabolism, cell division K03595 era; GTPase
D XBJ1_2486 tyrS; tyrosine tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D XBJ1_2165 leuS; leucine tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D XBJ1_3206 leuS; leucine tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D XBJ1_2262 aspS; aspartate tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D XBJ1_2222 argS; arginine tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D XBJ1_3902 ssb; ssDNA-binding protein controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein
D XBJ1_3380 ssb; ssDNA-binding protein controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein
D XBJ1_1171 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XBJ1_1545 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XBJ1_0597 ecfK; putative outer membrane antigen K07277 SAM50; outer membrane protein insertion porin family
D XBJ1_1742 dnaK; chaperone Hsp70 in DNA biosynthesis/cell division K04043 dnaK; molecular chaperone DnaK
D XBJ1_3159 grpE; Hsp 24 nucleotide exchange factor K03687 GRPE; molecular chaperone GrpE
D XBJ1_3570 groL; chaperone Hsp60 (GroEL), part of GroE chaperone system K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D XBJ1_3571 groS; chaperone Hsp10 (GroES), part of GroE chaperone system K04078 groES; chaperonin GroES
D XBJ1_1741 dnaJ; heat shock protein (Hsp40), co-chaperone with DnaK K03686 dnaJ; molecular chaperone DnaJ
D XBJ1_3028 iscS; cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D XBJ1_3025 hscB; co-chaperone protein Hsc20, believed to be involved in assembly of Fe-S clusters K04082 hscB; molecular chaperone HscB
D XBJ1_2493 putative monothiol glutaredoxin ydhD K07390 grxD; monothiol glutaredoxin
D XBJ1_0934 mrp; putative ATP-binding protein with nucleotide triphosphate hydrolase domain K03593 mrp; ATP-binding protein involved in chromosome partitioning
D XBJ1_1650 cyoE; protoheme IX farnesyltransferase (heme O biosynthesis) K02257 COX10; heme o synthase [EC:2.5.1.141]
D XBJ1_4410 yidC; preprotein translocase, cooperates with SecYEG and SecDFyajC translocon, membrane component K03217 yidC; YidC/Oxa1 family membrane protein insertase
D XBJ1_1606 htpG; chaperone Hsp90, heat shock protein C 62.5 K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:xbo02000]
D XBJ1_0810 msbA; lipid transport protein, flippase (ABC superfamily, membrane (N-terminal), atp_bind (C-terminal)) K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D XBJ1_1626 mdlA; putative transport protein, multidrug resistance-like (ABC superfamily, atp_bind) K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D XBJ1_1625 mdlB; putative transport protein, multidrug resistance-like (ABC superfamily, membrane (N-terminal), atp_bind (C-terminal)) K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D XBJ1_1092 RTX toxin ABC transporter (IM-ABC) protein RtxB K12530 rtxB; ATP-binding cassette, subfamily B, bacterial RtxB
D XBJ1_1094 Putative RTX toxin secretion ATP-binding protein K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE
D XBJ1_0489 Alkaline protease secretion ATP-binding protein aprD K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D XBJ1_0894 cydC; cysteine transport (export) protein (ABC superfamily, membrane (N-terminal), atp_bind (C-terminal)) K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D XBJ1_0893 cydD; cysteine transport (export) protein (ABC superfamily, membrane (N-terminal), atp_bind (C-terminal)) K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D XBJ1_2154 ABC transport protein XpsD (Fragment) (modular protein) K06160 pvdE; putative pyoverdin transport system ATP-binding/permease protein
D XBJ1_0786 uup; putative transport protein (ABC superfamily, atp_bind) K15738 uup; ABC transport system ATP-binding/permease protein
D XBJ1_3133 cysP; thiosulfate transport protein (ABC superfamily, peri_bind) K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D XBJ1_4301 sbp; sulfate transport protein (ABC superfamily, peri_bind) K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D XBJ1_3132 cysU; thiosulfate transport protein (ABC superfamily, membrane) K02046 cysU; sulfate/thiosulfate transport system permease protein
D XBJ1_3131 cysW; thiosulfate permease W protein (ABC superfamily, membrane) K02047 cysW; sulfate/thiosulfate transport system permease protein
D XBJ1_3129 cysA; sulfate permease A protein, chromate resistance (ABC superfamily, atp_bind) K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D XBJ1_1032 modA; molybdate transport protein (ABC superfamily, peri_bind) K02020 modA; molybdate transport system substrate-binding protein
D XBJ1_1031 modB; molybdate transport protein (ABC superfamily, membrane) K02018 modB; molybdate transport system permease protein
D XBJ1_1030 modC; molybdate transport protein (ABC superfamily, atp_bind) K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D XBJ1_1036 modF; molybdenum transport protein (ABC superfamily, atp_bind) K05776 modF; molybdate transport system ATP-binding protein
D XBJ1_3633 Periplasmic ferric iron-binding protein AfuA K02012 afuA; iron(III) transport system substrate-binding protein
D XBJ1_3632 Ferric transport system permease protein fbpB K02011 afuB; iron(III) transport system permease protein
D XBJ1_3631 afuC; ferric transport protein (ABC superfamily, atp_bind) K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D XBJ1_3687 tbpA; thiamin transport protein (ABC superfamily, peri_bind) K02064 thiB; thiamine transport system substrate-binding protein
D XBJ1_3686 thiP; thiamin transport protein (ABC superfamily, membrane) K02063 thiP; thiamine transport system permease protein
D XBJ1_3685 thiQ; thiamin transport protein (ABC superfamily, atp_bind) K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D XBJ1_0474 potD; spermidine/putrescine transport protein (ABC superfamily, peri_bind) K11069 potD; spermidine/putrescine transport system substrate-binding protein
D XBJ1_2139 ABC transporter, periplasmic binding protein (modular protein) K11069 potD; spermidine/putrescine transport system substrate-binding protein
D XBJ1_0473 potC; spermidine/putrescine transport protein (ABC superfamily, membrane) K11070 potC; spermidine/putrescine transport system permease protein
D XBJ1_0472 potB; spermidine/putrescine transport protein (ABC superfamily, membrane) K11071 potB; spermidine/putrescine transport system permease protein
D XBJ1_0471 potA; spermidine/putrescine transport protein (ABC superfamily, atp_bind) K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D XBJ1_3228 proX; glycine/betaine/proline transport protein (ABC superfamily, peri_bind) K02002 proX; glycine betaine/proline transport system substrate-binding protein
D XBJ1_3227 proW; glycine/betaine/proline transport protein (ABC superfamily, membrane) K02001 proW; glycine betaine/proline transport system permease protein
D XBJ1_3226 proV; glycine/betaine/proline transport protein (ABC superfamily, atp_bind) K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D XBJ1_4046 malE; maltose transport protein, chemotaxis (ABC superfamily, peri_bind) K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D XBJ1_4045 malF; maltose transport protein (ABC superfamily, membrane) K10109 malF; maltose/maltodextrin transport system permease protein
D XBJ1_4044 malG; maltose transport protein (ABC superfamily, membrane) K10110 malG; maltose/maltodextrin transport system permease protein
D XBJ1_4048 malK; bifunctional: maltose transport protein (ABC superfamily, atp_bind) (N-terminal); phenotypic repressor of mal operon (C-terminal) K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D XBJ1_0040 rbsB; D-ribose transport protein (ABC superfamily, peri_bind) K10439 rbsB; ribose transport system substrate-binding protein
D XBJ1_0039 rbsC; high-affinity D-ribose transport protein (ABC superfamily, membrane) K10440 rbsC; ribose transport system permease protein
D XBJ1_0038 rbsA; high-affinity D-ribose transport protein (ABC superfamily, atp_bind) K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D XBJ1_3832 yrbD; putative transport protein (ABC superfamily, peri_bind) K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D XBJ1_3831 yrbE; putative transport protein (ABC superfamily, membrane) K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D XBJ1_3830 yrbF; putative transport protein (ABC superfamily, atp_bind) K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D XBJ1_3833 yrbC; putative transport protein (ABC superfamily, atp_bind and membrane) K07323 mlaC; phospholipid transport system substrate-binding protein
D XBJ1_3834 conserved hypothetical protein K07122 mlaB; phospholipid transport system transporter-binding protein
D XBJ1_0188 pstS; high-affinity phosphate transport protein (ABC superfamily, peri_bind) K02040 pstS; phosphate transport system substrate-binding protein
D XBJ1_0189 pstC; high-affinity phosphate transport protein (ABC superfamily, membrane) K02037 pstC; phosphate transport system permease protein
D XBJ1_0190 pstA; high-affinity phosphate transport protein (ABC superfamily, membrane) K02038 pstA; phosphate transport system permease protein
D XBJ1_0191 pstB; high-affinity phosphate transport protein (ABC superfamily, atp_bind) K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D XBJ1_0903 artI; arginine transport protein (ABC superfamily, peri_bind) K09997 artI; arginine transport system substrate-binding protein
D XBJ1_0905 artM; arginine transport protein (ABC superfamily, membrane) K09998 artM; arginine transport system permease protein
D XBJ1_0904 artQ; arginine transport protein (ABC superfamily, membrane) K09999 artQ; arginine transport system permease protein
D XBJ1_0902 artP; arginine transport protein (ABC superfamily, atp_bind) K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]
D XBJ1_3202 gltI; glutamate/aspartate transport protein (ABC superfamily, peri_bind) K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D XBJ1_3204 gltK; glutamate/aspartate transport protein (ABC superfamily, membrane) K10002 gltK; glutamate/aspartate transport system permease protein
D XBJ1_3203 gltJ; glutamate/aspartate transport protein (ABC superfamily, membrane) K10003 gltJ; glutamate/aspartate transport system permease protein
D XBJ1_3205 gltL; glutamate/aspartate transport protein (ABC superfamily, atp_bind) K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D XBJ1_0430 fliY; cysteine transport protein (ABC superfamily, peri_bind) K02424 tcyA; L-cystine transport system substrate-binding protein
D XBJ1_0435 putative cysteine transport protein (ABC superfamily, peri_bind) K02424 tcyA; L-cystine transport system substrate-binding protein
D XBJ1_0432 yecS; putative amino acid transport protein (ABC superfamily, membrane) K10009 tcyB; L-cystine transport system permease protein
D XBJ1_0431 yecC; putative amino acid transport protein (ABC superfamily, atp_bind) K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D XBJ1_0613 metQ; D-methionine transport protein (ABC superfamily, peri_bind) K02073 metQ; D-methionine transport system substrate-binding protein
D XBJ1_0614 metI; D-and L-methionine transport protein (ABC superfamily, membrane) K02072 metI; D-methionine transport system permease protein
D XBJ1_0615 metN; D-and L-methionine transport protein (ABC superfamily, atp_bind) K02071 metN; D-methionine transport system ATP-binding protein
D XBJ1_0193 putative amino acid-binding protein (ABC superfamily, peri_bind) K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D XBJ1_0194 putative glutamate/aspartate transport protein (ABC superfamily, membrane) K02029 ABC.PA.P; polar amino acid transport system permease protein
D XBJ1_0195 putative high-affinity glutamine transport protein (ABC superfamily, membrane) K02029 ABC.PA.P; polar amino acid transport system permease protein
D XBJ1_2423 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XBJ1_2465 mppA; periplasmic murein tripeptide transport protein; negative regulator of multiple antibiotic resistance K15580 oppA; oligopeptide transport system substrate-binding protein
D XBJ1_1692 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XBJ1_2424 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XBJ1_1693 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XBJ1_1694 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XBJ1_1695 oppA; oligopeptide transport protein (ABC superfamily, peri_bind) K15580 oppA; oligopeptide transport system substrate-binding protein
D XBJ1_2422 oppB; oligopeptide transport protein (ABC superfamily, membrane) K15581 oppB; oligopeptide transport system permease protein
D XBJ1_2421 oppC; oligopeptide transport protein (ABC superfamily, membrane) K15582 oppC; oligopeptide transport system permease protein
D XBJ1_2420 oppD; oligopeptide transport protein (ABC superfamily, atp_bind) K15583 oppD; oligopeptide transport system ATP-binding protein
D XBJ1_2419 oppF; oligopeptide transport protein (ABC superfamily, atp_bind) K10823 oppF; oligopeptide transport system ATP-binding protein
D XBJ1_0246 dppA; dipeptide transport protein (ABC superfamily, peri_bind) K12368 dppA; dipeptide transport system substrate-binding protein
D XBJ1_0247 dppB; dipeptide transport protein 1 (ABC superfamily, membrane) K12369 dppB; dipeptide transport system permease protein
D XBJ1_0248 dppC; dipeptide transport protein 2 (ABC superfamily, membrane) K12370 dppC; dipeptide transport system permease protein
D XBJ1_0249 dppD; dipeptide transport protein (ABC superfamily, atp_bind) K12371 dppD; dipeptide transport system ATP-binding protein
D XBJ1_0250 dppF; dipeptide transport protein (ABC superfamily, atp_bind) K12372 dppF; dipeptide transport system ATP-binding protein
D XBJ1_2476 sapA; peptide transport protein (ABC superfamily, peri_bind) K19226 sapA; cationic peptide transport system substrate-binding protein
D XBJ1_2477 sapB; peptide transport protein (ABC superfamily, membrane) K19227 sapB; cationic peptide transport system permease protein
D XBJ1_2478 sapC; peptide transport protein (ABC superfamily, membrane) K19228 sapC; cationic peptide transport system permease protein
D XBJ1_2479 sapD; peptide transport protein (ABC superfamily, atp_bind) K19229 sapD; cationic peptide transport system ATP-binding protein
D XBJ1_2480 sapF; peptide transport protein (ABC superfamily, atp_bind) K19230 sapF; cationic peptide transport system ATP-binding protein
D XBJ1_2515 Hemin-binding periplasmic protein hmuT precursor K25132 hmuT; heme transport system substrate-binding protein
D XBJ1_2516 btuC; vitamin B12 transport protein (ABC superfamily, membrane) K25133 hmuU; heme transport system permease protein
D XBJ1_2517 Hemin transport system ATP-binding protein hmuV K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5]
D XBJ1_1446 fepB; ferric enterobactin tranport protein (ABC superfamily, peri_bind) K23185 fepB; ferric enterobactin transport system substrate-binding protein
D XBJ1_3244 Ferric enterobactin binding periplasmic protein FepB K25286 fagD; iron-siderophore transport system substrate-binding protein
D XBJ1_1444 fepD; ferric enterobactin transport protein (ABC superfamily, membrane) K23186 fepD; iron-siderophore transport system permease protein
D XBJ1_3243 fepD; ferric enterobactin transport protein (ABC superfamily, membrane) K23186 fepD; iron-siderophore transport system permease protein
D XBJ1_1443 fepG; ferric enterobactin transport protein (ABC superfamily, membrane) K23187 fepG; iron-siderophore transport system permease protein
D XBJ1_3242 Ferric enterobactin transport system permease protein FepG K23187 fepG; iron-siderophore transport system permease protein
D XBJ1_1442 fepC; ferric enterobactin transport protein (ABC superfamily, atp_bind) K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D XBJ1_3241 fepC; ferric enterobactin transport protein (ABC superfamily, atp_bind) K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D XBJ1_3347 conserved hypothetical protein; putative exported protein K25282 yclQ; iron-siderophore transport system substrate-binding protein
D XBJ1_3647 conserved hypothetical protein; putative exported protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D XBJ1_2878 conserved hypothetical protein; putative exported protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D XBJ1_2877 putative FecCD-family membrane transport protein (Inner membrane permease of iron/siderophore ABC transporter) K02015 ABC.FEV.P; iron complex transport system permease protein
D XBJ1_2876 putative ferric enterobactin transport protein (ABC superfamily, atp_bind) K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D XBJ1_3659 btuF; cyano-cobalamin transport protein (ABC superfamily, peri_bind) K06858 btuF; vitamin B12 transport system substrate-binding protein
D XBJ1_2538 btuC; vitamin B12 transport protein (ABC superfamily, membrane) K06073 btuC; vitamin B12 transport system permease protein
D XBJ1_2537 btuD; vitamin B12 transport protein (ABC superfamily, atp_bind) K06074 btuD; vitamin B12 transport system ATP-binding protein [EC:7.6.2.8]
D XBJ1_2228 znuA; high-affinity Zn transport protein (ABC superfamily, peri_bind) K09815 znuA; zinc transport system substrate-binding protein
D XBJ1_2226 znuB; high-affinity Zn transport protein (ABC superfamily, membrane) K09816 znuB; zinc transport system permease protein
D XBJ1_2227 znuC; high-affinity Zn transport protein (ABC superfamily, atp_bind) K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D XBJ1_2402 Periplasmic chelated iron-binding protein yfeA precursor K11604 sitA; manganese/iron transport system substrate-binding protein
D XBJ1_2404 Chelated iron transport system membrane protein yfeC K11605 sitC; manganese/iron transport system permease protein
D XBJ1_2405 Chelated iron transport system membrane protein yfeD K11606 sitD; manganese/iron transport system permease protein
D XBJ1_2403 Chelated iron transport system membrane protein yfeB K11607 sitB; manganese/iron transport system ATP-binding protein
D XBJ1_0839 Cobalt transport protein cbiN K02009 cbiN; cobalt/nickel transport protein
D XBJ1_0838 Cobalt transport protein cbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D XBJ1_0840 Protein cbiM K02007 cbiM; cobalt/nickel transport system permease protein
D XBJ1_0837 Cobalt import ATP-binding protein cbiO K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D XBJ1_0448 yjgP; putative transmembrane protein, transport K07091 lptF; lipopolysaccharide export system permease protein
D XBJ1_0449 yjgQ; putative transmembrane protein, transport K11720 lptG; lipopolysaccharide export system permease protein
D XBJ1_3824 yhbG; putative transport protein (ABC superfamily, atp_bind) K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D XBJ1_0974 ybhR; putative transport protein (ABC superfamily, membrane) K25180 ybhR; drug efflux transport system permease protein
D XBJ1_0973 ybhS; putative transport protein (ABC superfamily, membrane) K25181 ybhS; drug efflux transport system permease protein
D XBJ1_0972 ybhF; putative transport protein (ABC superfamily, atp_bind) K25182 ybhF; drug efflux transport system ATP-binding protein
D XBJ1_0971 ybhG; putative multidrug resistance membrane protein K25183 ybhG; membrane fusion protein YbhG
D XBJ1_2839 lolE; transport protein of outer membrane lipoproteins (ABC superfamily, membrane) K09808 lolC_E; lipoprotein-releasing system permease protein
D XBJ1_2841 lolC; transport protein of outer membrane lipoproteins (ABC superfamily, membrane) K09808 lolC_E; lipoprotein-releasing system permease protein
D XBJ1_2840 lolD; transport protein of outer membrane lipoproteins (ABC superfamily, atp_bind) K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D XBJ1_0555 ftsX; integral membrane cell division protein K09811 ftsX; cell division transport system permease protein
D XBJ1_0554 ftsE; putative transport protein (ABC superfamily, atp_bind) K09812 ftsE; cell division transport system ATP-binding protein
D XBJ1_2181 conserved hypothetical protein; putative membrane protein K25154 evrC; viologen exporter family transport system permease protein
D XBJ1_2180 putative ABC-2 type transport system permease protein K25155 evrB; viologen exporter family transport system permease protein
D XBJ1_2179 ABC transporter K25156 evrA; viologen exporter family transport system ATP-binding protein
D XBJ1_3679 yadH; putative transport protein (ABC superfamily, membrane) K01992 ABC-2.P; ABC-2 type transport system permease protein
D XBJ1_2944 conserved hypothetical protein; putative membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D XBJ1_2945 ABC Transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D XBJ1_3680 yadG; putative transport protein (ABC superfamily, atp_bind) K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D XBJ1_1145 putative ABC transporter, permease K02004 ABC.CD.P; putative ABC transport system permease protein
D XBJ1_1587 ybbP; putative membrane protein K02004 ABC.CD.P; putative ABC transport system permease protein
D XBJ1_1588 ybbA; putative transport protein (ABC superfamily, atp_bind) K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D XBJ1_1146 lolD; putative ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D XBJ1_3526 putative Phosphonate-transporting ATPase K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D XBJ1_2312 yfeH; putative membrane protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D XBJ1_3650 conserved hypothetical protein; putative membrane protein K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D XBJ1_2502 mdtK; multidrug transport protein (MATE family) K26939 norM; MATE family, multidrug efflux pump
D XBJ1_3630 Putative multidrug efflux transporter K26937 dinF; MATE family, multidrug efflux pump
D XBJ1_1744 putative permease (MFS superfamily) K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D XBJ1_1585 conserved hypothetical protein; putative membrane protein K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter
D XBJ1_0874 yfaV; putative transport protein (MFS family) K02511 hpaX; MFS transporter, ACS family, 4-hydroxyphenylacetate permease
D XBJ1_3032 hcaT; putative 3-phenylpropionic acid transport protein (MFS family) K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D XBJ1_3089 uhpT; hexose phosphate transport protein (MFS family) K07784 uhpT; MFS transporter, OPA family, hexose phosphate transport protein UhpT
D XBJ1_0542 glpT; sn-glycerol-3-phosphate transport protein (MFS family) K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter
D XBJ1_2121 uhpC; membrane protein which senses glucose-6-phosphate, interacts with UhpB and UhpA, regulates uhpT expression K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D XBJ1_3289 ygeD; putative efflux protein, resistance protein K08227 lplT; MFS transporter, LPLT family, lysophospholipid transporter
D XBJ1_1445 entS; putative transport protein (POT family) K08225 entS; MFS transporter, ENTS family, enterobactin (siderophore) exporter
D XBJ1_1642 ampG; muropeptide transport protein (MFS family) K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D XBJ1_2895 bcr; bicyclomycin/multidrug transport protein (MFS family) K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D XBJ1_4292 emrD; multidrug transport protein (MFS family) K08154 emrD; MFS transporter, DHA1 family, 2-module integral membrane pump EmrD
D XBJ1_2216 mdtH; multidrug transport protein (MFS family) K08162 mdtH; MFS transporter, DHA1 family, multidrug resistance protein
D XBJ1_3303 putative transporter K18553 cmlR; MFS transporter, DHA1 family, chloramphenicol resistance protein
D XBJ1_1118 ydhP; putative transmembrane efflux protein K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D XBJ1_0158 Major facilitator superfamily K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D XBJ1_0383 Major facilitator superfamily K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D XBJ1_2347 conserved hypothetical protein; putative membrane protein K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D XBJ1_3733 putative efflux protein K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D XBJ1_3235 emrB; multidrug transport protein (MFS family) K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D XBJ1_3432 putative methyl viologen resistance protein (MFS superfamily) K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein
D XBJ1_0011 hypothetical protein; putative membrane protein K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein
D XBJ1_1600 fsr; fosmidomycin/multidrug transport protein (MFS family) K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein
D XBJ1_2319 ynfM; putative transport protein (MFS family) K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D XBJ1_3875 putative transport protein K08219 UMF2; MFS transporter, UMF2 family, putative MFS family transporter protein
D XBJ1_3126 ptsI; PTS family enzyme I and Hpr components, PEP-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D XBJ1_3689 ptsP; PTS family enzyme I, transcriptional regulator (with NPR and NTR proteins) K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D XBJ1_3124 ptsH; PTS family Hpr protein, phosphohistidinoprotein-hexose phosphotransferase K02784 ptsH; phosphocarrier protein HPr
D XBJ1_3819 npr; NPr, phosphocarrier protein (HPr-like), nitrogen-related K08485 ptsO; phosphocarrier protein NPr
D XBJ1_3127 crr; PTS family enzyme IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D XBJ1_3174 nagE; PTS family enzyme IIC (N-terminal); enzyme IIB (center); enzyme IIA (C-terminal), N-acetylglucosamine-specific K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D XBJ1_0098 treB; PTS family enzyme IIBC, trehalose(maltose)-specific K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D XBJ1_4085 yfeV; putative PTS family enzyme IIBC with sucrose/glucose-specific domain K11192 murP; N-acetylmuramic acid PTS system EIICB component [EC:2.7.1.192]
D XBJ1_3727 chbA; PTS family enzyme IIA, cellobiose/arbutin/salicin sugar-specific K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D XBJ1_3729 chbB; PTS family enzyme IIB, cellobiose/arbutin/salicin sugar-specific K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D XBJ1_3728 PTS system, cellobiose-specific IIC component (CelB) K02761 celB; cellobiose PTS system EIIC component
D XBJ1_2565 manX; PTS family enzyme IIA (N-terminal); enzyme IIB (C-terminal), mannose-specific K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D XBJ1_2566 manY; PTS family enzyme IIC, mannose-specific K02795 manY; mannose PTS system EIIC component
D XBJ1_2567 manZ; PTS family enzyme IID, mannose-specific K02796 manZ; mannose PTS system EIID component
D XBJ1_3821 ptsN; PTS family enzyme IIA, sugar-specific, regulates N metabolism K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D XBJ1_1358 aqpZ; water channel (aquaporin Z) (MIP family) K06188 aqpZ; aquaporin Z
D XBJ1_4290 glpF; MIP channel, glycerol diffusion K02440 glpF; glycerol uptake facilitator
D XBJ1_1622 amtB; ammonium transport protein (Amt family) K03320 amt; ammonium transporter, Amt family
D XBJ1_0913 yliJ; putative glutathione S-transferase with thioredoxin-like domain and glutathione S-transferase, C-terminal domain K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D XBJ1_1348 putative glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D XBJ1_3846 sspA; stringent starvation protein A, regulator of transcription K03599 sspA; stringent starvation protein A
D XBJ1_1152 conserved hypothetical protein K07114 yfbK; Ca-activated chloride channel homolog
D XBJ1_0820 focA; formate transport protein (formate channel 1) (FNT family) K06212 focA; formate transporter
D XBJ1_1615 kefA; mechanosensitive channel protein (MscS family) K05802 mscK; potassium-dependent mechanosensitive channel
D XBJ1_4129 yjeP; putative periplasmic binding protein K22051 mscM; miniconductance mechanosensitive channel
D XBJ1_3450 mscS; mechanosensitive channel protein (MscS family) K03442 mscS; small conductance mechanosensitive channel
D XBJ1_2067 putative divalent cation transport protein (divalent cation transporter) K06213 mgtE; magnesium transporter
D XBJ1_1919 motA; proton conductor component of motor, torque generator K02556 motA; chemotaxis protein MotA
D XBJ1_1920 motB; enables flagellar motor rotation, linking torque machinery to cell wall K02557 motB; chemotaxis protein MotB
D XBJ1_1714 exbB; TonB complex protein K03561 exbB; biopolymer transport protein ExbB
D XBJ1_1713 exbD; ExbD/TolR-family transport protein (TonB-complex protein) K03559 exbD; biopolymer transport protein ExbD
D XBJ1_1047 tolQ; inner membrane protein required for outer membrane integrity, uptake of group A colicins and phage DNA K03562 tolQ; biopolymer transport protein TolQ
D XBJ1_1046 tolR; tol protein, role in outer membrane integrity, uptake of group A colicins (TonB-independent), and phage DNA K03560 tolR; biopolymer transport protein TolR
D XBJ1_4150 corA; Mg2+/Ni2+/Co2+ transport protein (Mg transport system I) (MIT family) K03284 corA; magnesium transporter
D XBJ1_2464 ydaN; putative membrane associated protein K16074 zntB; zinc transporter
D XBJ1_3220 Crc interacts with Csp affecting chromosome condensation (fragment) K06199 crcB; fluoride exporter
D XBJ1_0338 ytfL; putative hemolysin-related membrane protein with CBS regulatory domain K03699 tlyC; magnesium and cobalt exporter, CNNM family
D XBJ1_3272 conserved hypothetical protein; putative membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D XBJ1_0794 ompN; outer membrane pore protein N, non-specific K09476 ompF; outer membrane pore protein F
D XBJ1_1704 ompN; outer membrane pore protein N, non-specific K09476 ompF; outer membrane pore protein F
D XBJ1_4049 lamB; maltoporin, high-affinity receptor for maltose and maltoseoligosaccharides; phage lambda receptor K02024 lamB; maltoporin
D XBJ1_0778 ompA; outer membrane protein 3a (II*;G;d) K03286 TC.OOP; OmpA-OmpF porin, OOP family
D XBJ1_0722 ail; Attachment invasion locus K16078 ail; attachment invasion locus protein
D XBJ1_2995 fadL; outer membrane porin, transport of long-chain fatty acids, sensitivity to phage T2 K06076 fadL; long-chain fatty acid transport protein
D XBJ1_0742 yraJ; putative outer membrane protein K07347 fimD; outer membrane usher protein
D XBJ1_1945 yraJ; putative outer membrane protein K07347 fimD; outer membrane usher protein
D XBJ1_2365 yraJ; putative outer membrane protein K07347 fimD; outer membrane usher protein
D XBJ1_1768 Extracellular serine protease precursor K12685 ssp; subtilase-type serine protease [EC:3.4.21.-]
D XBJ1_2343 Extracellular serine protease precursor K12685 ssp; subtilase-type serine protease [EC:3.4.21.-]
D XBJ1_2197 Lipase 1 precursor (Triacylglycerol lipase) K12686 apeE; outer membrane lipase/esterase
D XBJ1_2728 Outer membrane esterase(lipase) K12686 apeE; outer membrane lipase/esterase
D XBJ1_2575 putative Outer membrane autotransporter barrel K19231 bmaC; fibronectin-binding autotransporter adhesin
D XBJ1_4260 btuB; outer membrane porin: vitamin B12/cobalamin transport, receptor for E colicins, bacteriophage BF23 K16092 btuB; vitamin B12 transporter
D XBJ1_3245 FhuE receptor (Outer-membrane receptor for ferric iron uptake) K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid
D XBJ1_2875 cirA; outer membrane pore protein, receptor for colicin I, requires TonB K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D XBJ1_4407 heme receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D XBJ1_2586 Colicin Js-sensitive receptor protein (cjrC) K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D XBJ1_3311 TonB-dependent heme receptor A precursor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D XBJ1_2513 Hemin receptor precursor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D XBJ1_2338 putative outer membrane copper receptor (OprC) K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D XBJ1_1438 fhuA; Outer membrane protein receptor (Fe receptor) K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D XBJ1_0487 Alkaline protease secretion protein aprF K12538 hasF; outer membrane protein, type I secretion system
D XBJ1_1814 tolC; outer membrane channel; tolerance to colicin E1, segregation of daughter chromosomes, role in organic solvent tolerance K12340 tolC; outer membrane protein
D XBJ1_0597 ecfK; putative outer membrane antigen K07277 SAM50; outer membrane protein insertion porin family
D XBJ1_3004 yfgL; putative serine/threonine protein kinase with quinoprotein alcohol dehydrogenase domain K17713 bamB; outer membrane protein assembly factor BamB
D XBJ1_2631 nlpB; lipoprotein-34 K07287 bamC; outer membrane protein assembly factor BamC
D XBJ1_3260 ecfD; putative lipoprotein with tetratricopeptide repeats (TPR) domain K05807 bamD; outer membrane protein assembly factor BamD
D XBJ1_3162 smpA; small membrane protein A K06186 bamE; outer membrane protein assembly factor BamE
D XBJ1_0341 ytfM; putative outer membrane protein K07278 tamA; translocation and assembly module TamA
D XBJ1_0342 conserved hypothetical protein; putative exported protein K09800 tamB; translocation and assembly module TamB
D XBJ1_0929 hypothetical protein K21449 ata; trimeric autotransporter adhesin
D XBJ1_2377 conserved hypothetical protein K21449 ata; trimeric autotransporter adhesin
D XBJ1_3825 yhbN; putative transport protein (ABC superfamily, peri_bind) K09774 lptA; lipopolysaccharide export system protein LptA
D XBJ1_3826 conserved hypothetical protein; putative exported protein K11719 lptC; lipopolysaccharide export system protein LptC
D XBJ1_1799 imp; organic solvent tolerance K04744 lptD; LPS-assembly protein
D XBJ1_3207 rlpB; a minor lipoprotein K03643 lptE; LPS-assembly lipoprotein
D XBJ1_3200 ybeX; putative integral membrane protein with CBS regulatory domain K06189 corC; hemolysin (HlyC) family protein
D XBJ1_0936 yohJ; putative transmembrane protein K06518 cidA; holin-like protein
D XBJ1_2879 lysP; lysine-specific permease (APC family) K11733 lysP; lysine-specific permease
D XBJ1_2742 aroP; aromatic amino acid transport protein (APC family) K11734 aroP; aromatic amino acid transport protein AroP
D XBJ1_2776 cycA; D-alanine/D-serine/glycine transport protein (APC family) K11737 cycA; D-serine/D-alanine/glycine transporter
D XBJ1_3615 proY; proline transport protein (APC family) K16234 hutT; histidine transporter
D XBJ1_2983 proY; proline transport protein (APC family) K16234 hutT; histidine transporter
D XBJ1_2360 ydgI; putative arginine:ornithine antiporter (APC family) K03758 arcD; arginine:ornithine antiporter / lysine permease
D XBJ1_2248 aniC; putative putrescine/ornithine transport protein, cryptic (APC family) K03759 adiC; arginine:agmatine antiporter
D XBJ1_4303 yiiP; putative transport protein (CDF family) K13283 fieF; ferrous-iron efflux pump FieF
D XBJ1_1618 acrB; multidrug efflux pump (RND family) K18138 acrB; multidrug efflux pump
D XBJ1_2731 mdtB; multidrug transport protein (RND family) K07788 mdtB; multidrug efflux pump
D XBJ1_2732 mdtC; multidrug transport protein, outer membrane (RND family) K07789 mdtC; multidrug efflux pump
D XBJ1_3562 sugE; quarternary ammonium compound transport protein (SMR family) K11741 sugE; quaternary ammonium compound-resistance protein SugE
D XBJ1_2235 mdtI; multidrug transport protein (SMR superfamily) K11742 mdtI; spermidine export protein MdtI
D XBJ1_2234 mdtJ; multidrug transport protein (SMR superfamily) K11743 mdtJ; spermidine export protein MdtJ
D XBJ1_0960 rhtA; threonine and homoserine efflux protein (DMT family) K11939 rhtA; inner membrane transporter RhtA
D XBJ1_4149 rarD; chloramphenicol resistance K05786 rarD; chloramphenicol-sensitive protein RarD
D XBJ1_2530 Inner membrane protein yfbW K12962 arnE; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnE
D XBJ1_3722 gntT; high-affinity gluconate permease (GntP family) K06156 gntU; Gnt-I system low-affinity gluconate transporter
D XBJ1_1455 dcuA; anaerobic dicarboxylate transport protein (Dcu family) K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA
D XBJ1_3305 betT; high-affinity choline transport protein (BCCT family) K02168 betT; choline/glycine/proline betaine transport protein
D XBJ1_3829 yrbG; putative Na:Ca transport protein (CacA family) K07301 yrbG; cation:H+ antiporter
D XBJ1_0089 pitA; low-affinity phosphate transport protein (PiT family) K16322 pit; low-affinity inorganic phosphate transporter
D XBJ1_3793 panF; sodium:pantothenate symporter (SSS family) K14392 panF; sodium/pantothenate symporter
D XBJ1_1999 putP; major sodium:proline symporter (SSS family) K11928 putP; sodium/proline symporter
D XBJ1_0048 yjcG; putative transport protein (SSS family) K14393 actP; cation/acetate symporter
D XBJ1_3648 dctA; citrate and C4-dicarboxylic acids transport protein (DAACS family) K11103 dctA; aerobic C4-dicarboxylate transport protein
D XBJ1_3870 sstT; Na+:serine/threonine symporter (DAACS family) K07862 sstT; serine/threonine transporter
D XBJ1_0230 gltS; glutamate transport protein (GltS family) K03312 gltS; glutamate:Na+ symporter, ESS family
D XBJ1_1731 nhaA; sodium:proton antiporter (NhaA family) K03313 nhaA; Na+:H+ antiporter, NhaA family
D XBJ1_2458 nhaB; sodium:proton antiporter, regulator of intracellular pH (NhaB family) K03314 nhaB; Na+:H+ antiporter, NhaB family
D XBJ1_0496 yjcE; putative sodium:hydrogen antiporter (CPA1 family) K24163 nhaK; monovalent cation/hydrogen antiporter
D XBJ1_4075 kefB; potassium:proton antiporter (CPA2 family) K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D XBJ1_4076 kefG; putative electron transfer flavoprotein-NAD/FAD/quinone oxidoreductase K11748 kefG; glutathione-regulated potassium-efflux system ancillary protein KefG
D XBJ1_1601 ybaL; putative transport protein with NAD(P)-binding Rossmann-fold domain (CPA2 family) K26735 KEA4_5_6; K+:H+ antiporter
D XBJ1_0521 trkH; potassium transport protein, requires TrkE (Trk family) K03498 trkH; trk/ktr system potassium uptake protein
D XBJ1_3217 trkG; Rac prophage; Trk system potassium uptake K03498 trkH; trk/ktr system potassium uptake protein
D XBJ1_4213 trkA; potassium transport protein, NAD(P)-binding (Trk family) K03499 trkA; trk/ktr system potassium uptake protein
D XBJ1_0229 yicE; putative purine/xanthine transport protein (NCS2 family) K16345 xanP; xanthine permease XanP
D XBJ1_0495 yjcD; putative membrane protein K06901 pbuG; adenine/guanine/hypoxanthine permease
D XBJ1_0205 yieG; putative membrane protein K06901 pbuG; adenine/guanine/hypoxanthine permease
D XBJ1_2252 yeiM; putative transport protein (NUP family) K16324 psuT; putative pseudouridine transporter
D XBJ1_0734 tyrP; tyrosine-specific transport protein (HAAAP family) K03834 tyrP; tyrosine-specific transport protein
D XBJ1_2887 mtr; tryptophan-specific transport protein (HAAAP family) K03835 mtr; tryptophan-specific transport protein
D XBJ1_0911 sdaC; putative serine transport protein (HAAAP family) K03837 sdaC; serine transporter
D XBJ1_3624 yhaO; Inner membrane transport protein yhaO K26604 cyuP; cysteine uptake transport protein
D XBJ1_2206 ychM; putative transport protein (SulP family) K03321 TC.SULP; sulfate permease, SulP family
D XBJ1_4170 wzxE; O-antigen translocase in LPS biosynthesis K16693 wzxE; enterobacterial common antigen flippase
D XBJ1_2219 mviN; putative virulence factor K03980 murJ; putative peptidoglycan lipid II flippase
D XBJ1_1105 putative membrane protein K13936 mdcF; malonate transporter and related proteins
D XBJ1_3449 yggA; putative amino acid transport protein (LYSE family) K06895 lysE; L-lysine exporter family protein LysE/ArgO
D XBJ1_0616 putative amino acid efflux transmembrane protein K05835 rhtC; threonine efflux protein
D XBJ1_3229 ygaZ; putative amino acid transport protein K26605 azlC; branched chain amino acid efflux pump
D XBJ1_3230 ygaH; putative transport protein K26606 azlD; branched chain amino acid efflux pump
D XBJ1_2974 TctC protein K07795 tctC; putative tricarboxylic transport membrane protein
D XBJ1_0547 yhhQ; putative integral membrane protein K09125 yhhQ; queuosine precursor transporter
D XBJ1_0952 hypothetical protein; putative membrane protein K09125 yhhQ; queuosine precursor transporter
D XBJ1_1123 putative membrane protein K09125 yhhQ; queuosine precursor transporter
D XBJ1_3477 ftsW; essential cell division gene, stablilzes FtsZ ring, required for PBP2 expression K03588 ftsW; cell division protein FtsW
D XBJ1_2569 yebN; putative membrane protein, terpenoid synthase-like K23242 mntP; manganese efflux pump family protein
D XBJ1_3620 yjiY; carbon starvation protein K23676 btsT; pyruvate/proton symporter
D XBJ1_4408 TonB protein K03832 tonB; periplasmic protein TonB
D XBJ1_2588 TonB-like colicin Js sensitive putative membrane protein (cjrB) K03832 tonB; periplasmic protein TonB
D XBJ1_2414 tonB; energy transducer; uptake of iron, cyanocobalimin; sensitivity to phages, colicins K03832 tonB; periplasmic protein TonB
D XBJ1_1043 pal; required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA K03640 pal; peptidoglycan-associated lipoprotein
D XBJ1_1045 tolA; required for outer membrane integrity, uptake of group A colicins, role in translocation of filamenous phage DNA to cytoplasm, role in surface expression of O-antigen K03646 tolA; colicin import membrane protein
D XBJ1_1044 tolB; required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA K03641 tolB; TolB protein
D XBJ1_3234 emrA; multidrug resistance secretion protein K03543 emrA; membrane fusion protein, multidrug efflux system
D XBJ1_0488 Alkaline protease secretion protein aprE K12537 hasE; membrane fusion protein, type I secretion system
D XBJ1_1093 RTX toxin ABC transporter protein (MFP) RtxD K12532 rtxD; membrane fusion protein, RTX toxin transport system
D XBJ1_1617 acrA; component of acridine efflux pump K03585 acrA; membrane fusion protein, multidrug efflux system
D XBJ1_1033 conserved hypothetical protein; putative exported protein K25859 acrZ; accessory protein, multidrug efflux pump
D XBJ1_2730 mdtA; membrane protein inolved in drug resistance K07799 mdtA; membrane fusion protein, multidrug efflux system
D XBJ1_1040 pnuC; nucleoside/purine/pyrimidine transport protein (NMN family) K03811 pnuC; nicotinamide mononucleotide transporter
D XBJ1_0165 feoA; ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A
D XBJ1_0164 feoB; ferrous iron transport protein B (FeoB family) K04759 feoB; ferrous iron transport protein B
D XBJ1_0163 yhgG; putative transcriptional regulator with DNA-binding Winged helix domain K07490 feoC; ferrous iron transport protein C
D XBJ1_2555 yebZ; putative resistance protein K07245 pcoD; copper resistance protein D
D XBJ1_2556 Protein yobA precursor K07156 copC; copper resistance protein C
D XBJ1_2454 mipA; scaffolding protein for murein-synthesizing holoenzyme, outer membrane protein K07274 mipA; MipA family protein
C 02044 Secretion system [BR:xbo02044]
D XBJ1_1814 tolC; outer membrane channel; tolerance to colicin E1, segregation of daughter chromosomes, role in organic solvent tolerance K12340 tolC; outer membrane protein
D XBJ1_1092 RTX toxin ABC transporter (IM-ABC) protein RtxB K12530 rtxB; ATP-binding cassette, subfamily B, bacterial RtxB
D XBJ1_1094 Putative RTX toxin secretion ATP-binding protein K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE
D XBJ1_1093 RTX toxin ABC transporter protein (MFP) RtxD K12532 rtxD; membrane fusion protein, RTX toxin transport system
D XBJ1_0489 Alkaline protease secretion ATP-binding protein aprD K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D XBJ1_0488 Alkaline protease secretion protein aprE K12537 hasE; membrane fusion protein, type I secretion system
D XBJ1_0487 Alkaline protease secretion protein aprF K12538 hasF; outer membrane protein, type I secretion system
D XBJ1_3336 bifunctional prepilin peptidase: leader peptidase; methyl transferase (General Secretory Pathway) (fragment) K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
D XBJ1_3010 Complete genome; segment 5/17 K02656 pilF; type IV pilus assembly protein PilF
D XBJ1_3341 yggR; putative transport protein with P-loop containing NTP hydrolase domain K02669 pilT; twitching motility protein PilT
D XBJ1_3693 ppdA; prepilin peptidase-dependent protein A, possibly in type IV pilin biogenesis K02679 ppdA; prepilin peptidase dependent protein A
D XBJ1_3694 ppdB; prepilin peptidase-dependent protein B, possibly in type IV pilin biogenesis K02680 ppdB; prepilin peptidase dependent protein B
D XBJ1_3696 Prepilin peptidase dependent protein C K02681 ppdC; prepilin peptidase dependent protein C
D XBJ1_3459 ppdD; putative major component of type IV pilin, prelipin peptidase-dependent protein K02682 ppdD; prepilin peptidase dependent protein D
D XBJ1_3460 hofB; putative integral membrane protein involved in biogenesis of fimbriae (type IV pilin), protein transport, DNA uptake with P-loop containing NTP hydrolysis domain K02504 hofB; protein transport protein HofB
D XBJ1_3461 hofC; component in type IV pilin biogenesis, transmembrane protein K02505 hofC; protein transport protein HofC
D XBJ1_0064 conserved hypothetical protein K12288 hofM; pilus assembly protein HofM
D XBJ1_0062 conserved hypothetical protein K12289 hofN; pilus assembly protein HofN
D XBJ1_0061 conserved hypothetical protein K12290 hofO; pilus assembly protein HofO
D XBJ1_0060 putative transport protein, possibly in biosynthesis of type IV pilin (fragment) K02507 hofQ; protein transport protein HofQ
D XBJ1_3344 yggT; putative integral membrane resistance protein K02221 yggT; YggT family protein
D XBJ1_1632 putative DNA uptake protein and/or related DNA-binding protein K02237 comEA; competence protein ComEA
D XBJ1_0811 ycaI; putative recombination protein with metallo-hydrolase domain K02238 comEC; competence protein ComEC
D XBJ1_1939 flhA; putative export protein for flagellar biosynthesis K02400 flhA; flagellar biosynthesis protein FlhA
D XBJ1_1938 flhB; putative part of export apparatus for flagellar proteins K02401 flhB; flagellar biosynthesis protein FlhB
D XBJ1_2704 fliF; flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein K02409 fliF; flagellar M-ring protein FliF
D XBJ1_2706 fliH; putative flagellar biosynthesis; export of flagellar proteins K02411 fliH; flagellar assembly protein FliH
D XBJ1_2707 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D XBJ1_2713 fliN; flagellar biosynthesis; component of motor switch and energizing K02417 fliN; flagellar motor switch protein FliN
D XBJ1_2714 Protein mopB K02418 fliO; flagellar protein FliO/FliZ
D XBJ1_2715 fliP; flagellar biosynthesis K02419 fliP; flagellar biosynthesis protein FliP
D XBJ1_2716 fliQ; flagellar biosynthesis K02420 fliQ; flagellar biosynthesis protein FliQ
D XBJ1_2717 fliR; putative flagellar biosynthetic protein, regulator K02421 fliR; flagellar biosynthesis protein FliR
D XBJ1_1556 putative chromosome partitioning related protein K12055 K12055; chromosome partitioning related protein ParA
D XBJ1_3368 putative enzyme K12055 K12055; chromosome partitioning related protein ParA
D XBJ1_3387 putative plasmid transfer protein K12071 traD; conjugal transfer pilus assembly protein TraD
D XBJ1_1536 conserved hypothetical protein K12071 traD; conjugal transfer pilus assembly protein TraD
D XBJ1_3424 dsbC; protein disulfide isomerase II, activated by N-terminal of DsbD K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D XBJ1_1768 Extracellular serine protease precursor K12685 ssp; subtilase-type serine protease [EC:3.4.21.-]
D XBJ1_2343 Extracellular serine protease precursor K12685 ssp; subtilase-type serine protease [EC:3.4.21.-]
D XBJ1_2197 Lipase 1 precursor (Triacylglycerol lipase) K12686 apeE; outer membrane lipase/esterase
D XBJ1_2728 Outer membrane esterase(lipase) K12686 apeE; outer membrane lipase/esterase
D XBJ1_0259 xhlB; XhlB (TpsB protein) K11017 shlB; hemolysin activation/secretion protein
D XBJ1_0258 xhlA; Hemolysin XhlA(TpsA-related protein) K11016 shlA; hemolysin
D XBJ1_0276 Conserved Hypothetical protein (probable component of SSt VI cluster) K11891 impL; type VI secretion system protein ImpL
D XBJ1_2105 Conserved hypothetical protein (ImcF domain protein precursor of SST VI cluster) K11891 impL; type VI secretion system protein ImpL
D XBJ1_0271 conserved hypothetical protein (probable component of SST VI cluster) K11892 impK; type VI secretion system protein ImpK
D XBJ1_2106 Conserved hypothetical protein with OmpA/MotB domains (probable component of SST VI cluster) K11892 impK; type VI secretion system protein ImpK
D XBJ1_0270 conserved hypothetical protein (probable component of SST VI cluster) K11893 impJ; type VI secretion system protein ImpJ
D XBJ1_2107 conserved hypothetical protein, probable component of SST VI cluster K11893 impJ; type VI secretion system protein ImpJ
D XBJ1_0267 conserved hypothetical protein (probable component of the SST VI cluster) K11895 impH; type VI secretion system protein ImpH
D XBJ1_2097 conserved hypothetical protein (probable component of SST VI cluster) K11895 impH; type VI secretion system protein ImpH
D XBJ1_0266 conserved hypothetical protein (probable component of the SST VI cluster) K11896 impG; type VI secretion system protein ImpG
D XBJ1_1500 conserved hypothetical protein K11896 impG; type VI secretion system protein ImpG
D XBJ1_1088 hypothetical protein K11896 impG; type VI secretion system protein ImpG
D XBJ1_2098 conserved hypothetical protein (probable component of SST VI cluster) K11896 impG; type VI secretion system protein ImpG
D XBJ1_0182 conserved hypothetical protein K11896 impG; type VI secretion system protein ImpG
D XBJ1_0559 conserved hypothetical protein K11896 impG; type VI secretion system protein ImpG
D XBJ1_2099 conserved hypothetical protein (probable component of SST VI cluster) K11897 impF; type VI secretion system protein ImpF
D XBJ1_0264 conserved hypothetical protein (probable component of the SST VI cluster) K11900 impC; type VI secretion system protein ImpC
D XBJ1_2102 conserved hypothetical protein (probable component of SST VI cluster) K11900 impC; type VI secretion system protein ImpC
D XBJ1_0263 conserved hypothetical protein (probable component of the SST VI cluster) K11901 impB; type VI secretion system protein ImpB
D XBJ1_2103 conserved hypothetical protein (probable component of SST VI cluster) K11901 impB; type VI secretion system protein ImpB
D XBJ1_2104 conserved hypothetical protein (probable component of SST VI cluster) K11902 impA; type VI secretion system protein ImpA
D XBJ1_0261 Hemolysin-coregulated protein Hcp(probable Type VI secreted cytotoxin system component) K11903 hcp; type VI secretion system secreted protein Hcp
D XBJ1_2101 putative secretion system effector of SST VI cluster (Hcp family) K11903 hcp; type VI secretion system secreted protein Hcp
D XBJ1_1501 putative Vrg family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D XBJ1_2114 Conserved hypothetical protein (Vgr family protein, that may be secreted via SST VI system) K11904 vgrG; type VI secretion system secreted protein VgrG
D XBJ1_0278 Putative Rhs accessory genetic element (modular protein) K11904 vgrG; type VI secretion system secreted protein VgrG
D XBJ1_1308 VgrG K11904 vgrG; type VI secretion system secreted protein VgrG
D XBJ1_0181 conserved hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D XBJ1_0560 conserved hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D XBJ1_1087 conserved hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D XBJ1_1301 VgrG K11904 vgrG; type VI secretion system secreted protein VgrG
D XBJ1_2645 conserved hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D XBJ1_0265 conserved hypothetical protein (probable component of the SST VI cluster; lysozyme-related protein) K11905 K11905; type VI secretion system protein
D XBJ1_0269 conserved hypothetical protein (probable lipoprotein of SST VI cluster) K11906 vasD; type VI secretion system protein VasD
D XBJ1_2108 conserved protein of unknown function (putative lipoprotein of SST VI cluster) K11906 vasD; type VI secretion system protein VasD
D XBJ1_0272 clpB; putative ClpA/B-type chaperone (Putative ATPase with chaperone activity; probable component of SST VI cluster) K11907 vasG; type VI secretion system protein VasG
D XBJ1_2096 putative ClpA/B-type chaperone (Putative ATPase with chaperone activity; probable component of SST VI cluster) K11907 vasG; type VI secretion system protein VasG
D XBJ1_0275 Conserved hypothetical protein with ImpA domain(probable component of SST VI cluster) K11910 vasJ; type VI secretion system protein VasJ
D XBJ1_0277 Conserved hypothetical protein with ImpA domain(probable component of SST VI cluster) K11911 vasL; type VI secretion system protein VasL
D XBJ1_0268 Conserved hypothetical protein with FHA domain (probable component of SST VI cluster) K11894 impI; type VI secretion system protein ImpI
D XBJ1_0274 conserved hypothetical protein (probable component of the SST VI cluster) K11909 vasI; type VI secretion system protein VasI
D XBJ1_1147 ppkA; serine/threonine protein kinase K11912 ppkA; serine/threonine-protein kinase PpkA [EC:2.7.11.1]
D XBJ1_0744 putative fimbrial-like adhesin protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D XBJ1_1943 putative fimbrial-like adhesin protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D XBJ1_2363 putative fimbrial-like adhesin protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D XBJ1_0742 yraJ; putative outer membrane protein K07347 fimD; outer membrane usher protein
D XBJ1_1945 yraJ; putative outer membrane protein K07347 fimD; outer membrane usher protein
D XBJ1_2365 yraJ; putative outer membrane protein K07347 fimD; outer membrane usher protein
D XBJ1_3537 Usher protein K12518 papC; outer membrane usher protein PapC
D XBJ1_3536 Chaperone K12519 papD; chaperone protein PapD
D XBJ1_3467 secA; preprotein translocase, ATPase secretion component (General Secretory Pathway) K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D XBJ1_4332 secB; molecular chaperone in protein export, enhances activity of SecA (General Secretory Pathway) K03071 secB; preprotein translocase subunit SecB
D XBJ1_1677 secD; preprotein translocase, auxillary membrane component (General Secretory Pathway) K03072 secD; preprotein translocase subunit SecD
D XBJ1_4060 secE; preprotein translocase, membrane component, transport across inner membrane (General Secretory Pathway) K03073 secE; preprotein translocase subunit SecE
D XBJ1_1676 secF; preprotein translocase, auxillary membrane component (General Secretory Pathway) K03074 secF; preprotein translocase subunit SecF
D XBJ1_0365 secG; preprotein translocase, membrane component, transport across inner membrane (General Secretory Pathway) K03075 secG; preprotein translocase subunit SecG
D XBJ1_3468 secM; secretion monitor, regulator of secA translation (General Secretory Pathway) K13301 secM; secretion monitor
D XBJ1_4221 secY; preprotein translocase, membrane component, transport across inner membrane (General Secretory Pathway) K03076 secY; preprotein translocase subunit SecY
D XBJ1_3270 ffh; 4.5S-RNP protein, GTP-binding export factor, part of signal recognition particle with 4.5 RNA K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D XBJ1_0553 ftsY; cell division protein: membrane binding (N-terminal); GTPase domain (C-terminal) K03110 ftsY; fused signal recognition particle receptor
D XBJ1_1678 yajC; preprotein translocase, auxillary membrane component (General Secretory Pathway) K03210 yajC; preprotein translocase subunit YajC
D XBJ1_4410 yidC; preprotein translocase, cooperates with SecYEG and SecDFyajC translocon, membrane component K03217 yidC; YidC/Oxa1 family membrane protein insertase
D XBJ1_0509 tatA; twin-arginine translocase subunit, sec-independent protein export K03116 tatA; sec-independent protein translocase protein TatA
D XBJ1_0510 tatB; Involved in membrane translocation of periplasmic proteins that preserves folded structures and bound ligands K03117 tatB; sec-independent protein translocase protein TatB
D XBJ1_0511 tatC; twin-arginine translocase subunit, sec-independent protein export K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:xbo02042]
D XBJ1_2410 putative Mcf protein (fragment) K19615 fitD; insecticidal toxin
D XBJ1_1574 tccC; C component of insecticidal toxin complex (Tc) K11021 tccC; insecticidal toxin complex protein TccC
D XBJ1_3085 tccC3; C component of insecticidal toxin complex K11021 tccC; insecticidal toxin complex protein TccC
D XBJ1_1089 putative toxin RtxA protein K10953 rtxA; RTX toxin RtxA
D XBJ1_0338 ytfL; putative hemolysin-related membrane protein with CBS regulatory domain K03699 tlyC; magnesium and cobalt exporter, CNNM family
D XBJ1_3272 conserved hypothetical protein; putative membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D XBJ1_0258 xhlA; Hemolysin XhlA(TpsA-related protein) K11016 shlA; hemolysin
D XBJ1_0259 xhlB; XhlB (TpsB protein) K11017 shlB; hemolysin activation/secretion protein
C 02022 Two-component system [BR:xbo02022]
D XBJ1_1687 phoR; sensory histidine kinase in two-component regulatory system with PhoB, regulation of Pi uptake, senses Pi K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D XBJ1_1688 phoB; response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family) K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D XBJ1_2836 phoQ; sensory histidine kinase in two-component regulatory system with PhoP, regulates gene expression at low [Mg+], senses Mg+ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D XBJ1_2835 phoP; response regulator in two-component regulatory system with PhoQ, regulates gene expression at low [Mg+] (OmpR family) K07660 phoP; two-component system, OmpR family, response regulator PhoP
D XBJ1_0187 EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D XBJ1_0186 ompR; response regulator in two-component regulatory system with EnvZ, regulates ompF and ompC expression (OmpR family) K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D XBJ1_4312 cpxA; sensory histidine kinase in two-component regulatory system with CpxR, regulates genes involved in folding/degrading periplasmic proteins, senses changes in the cell envelope K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D XBJ1_4311 cpxR; response regulator in two-component regulatory system with CpxA, regulates genes involved in folding/degrading periplasmic proteins (OmpR family) K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D XBJ1_2733 baeS; sensory histidine kinase in two-component regulatory system wtih BaeR K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D XBJ1_2734 baeR; response regulator in two-component regulatory system with BaeS (OmpR family) K07664 baeR; two-component system, OmpR family, response regulator BaeR
D XBJ1_1070 kdpD; sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D XBJ1_1071 kdpE; response regulator in two-component regulatory system with KdpD, regulation of potassium translocation (OmpR family) K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D XBJ1_3853 arcB; hybrid sensory histidine kinase in two-component regulatory system with ArcA, regulates respiration and fermentation, senses oxidized quinones K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D XBJ1_3517 arcA; response regulator in two-component regulatory system with ArcB (or CpxA), regulates respiratory and fermentative metabolism (OmpR family) K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D XBJ1_2972 Sensor protein K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D XBJ1_2973 qseB; response regulator in two-component regulatory system with QseC, regulates flagella and motility by quorum sensing (OmpR family) K07774 tctD; two-component system, OmpR family, response regulator TctD
D XBJ1_2123 conserved hypothetical protein K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D XBJ1_2592 narP; response regulator in two-component regulatory system with NarQ (or NarX), regulates anaerobic respiratory gene expression K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D XBJ1_2122 uhpB; sensory histidine kinase in two-component regulatory sytem with UhpA, regulates uhptT expression K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D XBJ1_3090 uhpA; response regulator (activator) in two-component regulatory system wtih UhpB, regulates uhpT expression (LuxR/UhpA family) K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA
D XBJ1_0731 rcsC; hybrid sensory histidine kinase in two-component regulatory system with RcsB and YojN, regulates capsule biosynthesis, cell division genes, OsmC expression K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D XBJ1_0733 rcsD; putative sensory histidine kinase (phosphotransfer intermediate) associated with the RcsBC two-component regulatory system K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D XBJ1_0732 rcsB; response regulator (positive) in two-component regulatory system with RcsC and YojN, regulates capsule biosynthesis, cell division genes, OsmC expression (LuxR/UhpA familiy) K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D XBJ1_3656 Sensor protein BarA K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D XBJ1_2676 uvrY; putative regulator in two-component regulatory system with BarA (LuxR/UhpA familiy) K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D XBJ1_0376 yehU; putative sensory kinase in two-component regulatory system K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D XBJ1_0375 yehT; putative response regulator in two-component regulatory system K02477 K02477; two-component system, LytTR family, response regulator
D XBJ1_0210 glnL; sensory kinase (soluble) in two-component regulatory system with GlnG, nitrogen regulation (nitrogen regulator II, NRII) K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D XBJ1_0209 glnG; response regulator in two-component regulatory system with GlnL, nitrogen regulation (EBP family) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D XBJ1_3039 yfhK; putative sensory kinase in regulatory system K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D XBJ1_3037 yfhA; putative response regulator in two-component regulatory system (EBP family) K07715 glrR; two-component system, NtrC family, response regulator GlrR
D XBJ1_1921 cheA; chemotactic sensory histidine kinase (soluble) in two-component regulatory system with CheB and CheY, senses chemotactic signal K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D XBJ1_1927 cheY; chemotactic response regulator in two-component regulatory system with CheA, transmits signals to FliM flagelllar motor component K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D XBJ1_1926 cheB; chemotactic response regulator; methylesterase, in two-component regulatory system with CheA, regulates chemotactic response K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D XBJ1_2436 rssB; response regulator involved in protein turnover, controls stability of RpoS K02485 rssB; two-component system, response regulator
C 02035 Bacterial motility proteins [BR:xbo02035]
D XBJ1_1921 cheA; chemotactic sensory histidine kinase (soluble) in two-component regulatory system with CheB and CheY, senses chemotactic signal K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D XBJ1_1922 cheW; purine-binding chemotaxis protein; regulation K03408 cheW; purine-binding chemotaxis protein CheW
D XBJ1_1925 cheR; glutamate methyltransferase, chemotactic response regulator K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D XBJ1_1926 cheB; chemotactic response regulator; methylesterase, in two-component regulatory system with CheA, regulates chemotactic response K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D XBJ1_1927 cheY; chemotactic response regulator in two-component regulatory system with CheA, transmits signals to FliM flagelllar motor component K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D XBJ1_1928 cheZ; chemotactic response, CheY protein phophatase K03414 cheZ; chemotaxis protein CheZ
D XBJ1_1923 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D XBJ1_1924 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor
D XBJ1_2706 fliH; putative flagellar biosynthesis; export of flagellar proteins K02411 fliH; flagellar assembly protein FliH
D XBJ1_2707 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D XBJ1_2708 fliJ; flagellar fliJ protein K02413 fliJ; flagellar protein FliJ
D XBJ1_2714 Protein mopB K02418 fliO; flagellar protein FliO/FliZ
D XBJ1_2715 fliP; flagellar biosynthesis K02419 fliP; flagellar biosynthesis protein FliP
D XBJ1_2716 fliQ; flagellar biosynthesis K02420 fliQ; flagellar biosynthesis protein FliQ
D XBJ1_2717 fliR; putative flagellar biosynthetic protein, regulator K02421 fliR; flagellar biosynthesis protein FliR
D XBJ1_1939 flhA; putative export protein for flagellar biosynthesis K02400 flhA; flagellar biosynthesis protein FlhA
D XBJ1_1938 flhB; putative part of export apparatus for flagellar proteins K02401 flhB; flagellar biosynthesis protein FlhB
D XBJ1_2705 fliG; flagellar biosynthesis; component of motor switching and energizing K02410 fliG; flagellar motor switch protein FliG
D XBJ1_2712 fliM; flagellar biosynthesis; component of motor switch and energizing K02416 fliM; flagellar motor switch protein FliM
D XBJ1_2713 fliN; flagellar biosynthesis; component of motor switch and energizing K02417 fliN; flagellar motor switch protein FliN
D XBJ1_2704 fliF; flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein K02409 fliF; flagellar M-ring protein FliF
D XBJ1_1959 flgI; putative flagella basal body protein K02394 flgI; flagellar P-ring protein FlgI
D XBJ1_1949 flgA; flagellar biosynthesis; assembly of basal-body periplasmic P ring K02386 flgA; flagellar basal body P-ring formation protein FlgA
D XBJ1_1957 flgH; flagellar biosynthesis; basal-body outer-membrane L (lipopolysaccharide layer) ring protein K02393 flgH; flagellar L-ring protein FlgH
D XBJ1_2711 fliL; flagellar biosynthesis K02415 fliL; flagellar protein FliL
D XBJ1_2703 fliE; flagellar biosynthesis; basal-body component K02408 fliE; flagellar hook-basal body complex protein FliE
D XBJ1_2709 fliK; flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D XBJ1_1950 flgB; flagellar biosynthesis; cell-proximal portion of basal-body rod K02387 flgB; flagellar basal-body rod protein FlgB
D XBJ1_1951 flgC; flagellar biosynthesis; cell-proximal portion of basal-body rod K02388 flgC; flagellar basal-body rod protein FlgC
D XBJ1_1952 flgD; flagellar biosynthesis; initiation of hook assembly K02389 flgD; flagellar basal-body rod modification protein FlgD
D XBJ1_1954 flgF; flagellar biosynthesis; cell-proximal portion of basal-body rod K02391 flgF; flagellar basal-body rod protein FlgF
D XBJ1_1955 flgG; flagellar biosynthesis; cell-distal portion of basal-body rod K02392 flgG; flagellar basal-body rod protein FlgG
D XBJ1_1960 flgJ; flagellar biosynthesis K02395 flgJ; peptidoglycan hydrolase FlgJ
D XBJ1_1953 flgE; flagellar biosynthesis; hook protein K02390 flgE; flagellar hook protein FlgE
D XBJ1_1961 flgK; flagellar biosynthesis; hook-filament junction protein 1 K02396 flgK; flagellar hook-associated protein 1
D XBJ1_1962 flgL; flagellar biosynthesis; hook-filament junction protein K02397 flgL; flagellar hook-associated protein 3 FlgL
D XBJ1_1947 flgN; flagellar biosynthesis; believed to be export chaperone for FlgK and FlgL K02399 flgN; flagellar biosynthesis protein FlgN
D XBJ1_1995 Flagellin K02406 fliC; flagellin
D XBJ1_1994 fliD; flagellar biosynthesis; filament capping protein, enables filament assembly K02407 fliD; flagellar hook-associated protein 2
D XBJ1_1993 fliS; flagellar biosynthesis; repressor of class 3a and 3b operons (RflA activity) K02422 fliS; flagellar secretion chaperone FliS
D XBJ1_1992 fliT; putative flagellar biosynthesis; export chaperone for FliD K02423 fliT; flagellar protein FliT
D XBJ1_1917 flhD; transcriptional regulator of flagellar class II biosynthesis, anaerobic respiration and the Entner-Doudoroff pathway, tetramer with FlhC K02403 flhD; flagellar transcriptional activator FlhD
D XBJ1_1918 flhC; transcriptional regulator of flagellar class II biosynthesis, anaerobic respiration and the Entner-Doudoroff pathway, tetramer with FlhD K02402 flhC; flagellar transcriptional activator FlhC
D XBJ1_1996 fliA; sigma F (sigma 28) factor of RNA polymerase, transcription of late flagellar genes (class 3a and 3b operons) K02405 fliA; RNA polymerase sigma factor FliA
D XBJ1_1919 motA; proton conductor component of motor, torque generator K02556 motA; chemotaxis protein MotA
D XBJ1_1920 motB; enables flagellar motor rotation, linking torque machinery to cell wall K02557 motB; chemotaxis protein MotB
D XBJ1_0430 fliY; cysteine transport protein (ABC superfamily, peri_bind) K02424 tcyA; L-cystine transport system substrate-binding protein
D XBJ1_0435 putative cysteine transport protein (ABC superfamily, peri_bind) K02424 tcyA; L-cystine transport system substrate-binding protein
D XBJ1_1997 fliZ; putative regulator of FliA K02425 fliZ; regulator of sigma S factor FliZ
D XBJ1_1948 flgM; anti-FliA (anti-sigma) factor; also known as RflB protein K02398 flgM; negative regulator of flagellin synthesis FlgM
D XBJ1_3341 yggR; putative transport protein with P-loop containing NTP hydrolase domain K02669 pilT; twitching motility protein PilT
D XBJ1_3010 Complete genome; segment 5/17 K02656 pilF; type IV pilus assembly protein PilF
D XBJ1_0744 putative fimbrial-like adhesin protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D XBJ1_1943 putative fimbrial-like adhesin protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D XBJ1_2363 putative fimbrial-like adhesin protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D XBJ1_0742 yraJ; putative outer membrane protein K07347 fimD; outer membrane usher protein
D XBJ1_1945 yraJ; putative outer membrane protein K07347 fimD; outer membrane usher protein
D XBJ1_2365 yraJ; putative outer membrane protein K07347 fimD; outer membrane usher protein
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:xbo04812]
D XBJ1_3802 mreB; split gene in K-12 with ATPase domain, associated with mecillinam resistance, cell shape K03569 mreB; rod shape-determining protein MreB and related proteins
D XBJ1_3471 ftsZ; tubulin-like GTP-binding protein and GTPase, forms circumferential ring in cell division K03531 ftsZ; cell division protein FtsZ
D XBJ1_3472 ftsA; cell division protein with ATPase domain, involved in recruitment of FtsK to Z ring K03590 ftsA; cell division protein FtsA
D XBJ1_2383 minC; cell division inhibitor, inhibits FtsZ ring formation K03610 minC; septum site-determining protein MinC
D XBJ1_2384 minD; cell division inhibitor, membrane ATPase, activates MinC K03609 minD; septum site-determining protein MinD
D XBJ1_2385 minE; cell division topological specificity factor, reverses MinC inhibition of FtsZ ring formation K03608 minE; cell division topological specificity factor
C 04147 Exosome [BR:xbo04147]
D XBJ1_1606 htpG; chaperone Hsp90, heat shock protein C 62.5 K04079 HSP90A; molecular chaperone HtpG
D XBJ1_3651 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D XBJ1_2452 gapA; glyceraldehyde-3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D XBJ1_3082 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D XBJ1_2503 pykF; pyruvate kinase I (formerly F), fructose-stimulated K00873 PK; pyruvate kinase [EC:2.7.1.40]
D XBJ1_2231 pykA; pyruvate kinase II, glucose-stimulated K00873 PK; pyruvate kinase [EC:2.7.1.40]
D XBJ1_4092 ppiA; peptidyl-prolyl cis-trans isomerase A (rotamase A) K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D XBJ1_2271 Peptidase M19, renal dipeptidase precursor K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D XBJ1_1683 putative peroxiredoxin (Thioredoxin reductase) K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D XBJ1_3570 groL; chaperone Hsp60 (GroEL), part of GroE chaperone system K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D XBJ1_1742 dnaK; chaperone Hsp70 in DNA biosynthesis/cell division K04043 dnaK; molecular chaperone DnaK
D XBJ1_4002 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D XBJ1_2584 guaB; IMP dehydrogeanse K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D XBJ1_4062 tufA; protein chain elongation factor EF-Tu (duplicate of tufB) K02358 tuf; elongation factor Tu
D XBJ1_4247 tufB; putative protein chain elongation factor EF-Tu; GTP-binding factor (duplicate of tufA) K02358 tuf; elongation factor Tu
D XBJ1_2849 ycfF; putative inhibitor of protein kinase C, contains a transferase domain K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D XBJ1_2312 yfeH; putative membrane protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D XBJ1_3489 putative long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase) (LACS) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D XBJ1_2242 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D XBJ1_1605 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D XBJ1_1612 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D XBJ1_4268 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D XBJ1_4269 Argininosuccinate synthase (Citrulline--aspartate ligase) K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D XBJ1_3500 metB; cystathionine gamma-synthase, PLP-dependent K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D XBJ1_0346 fbp; fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D XBJ1_4291 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D XBJ1_0211 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D XBJ1_0512 hemB; 5-aminolevulinate dehydratase (porphobilinogen synthase) K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D XBJ1_3444 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D XBJ1_4018 purH; bifunctional: IMP cyclohydrolase (N-terminal); phosphoribosylaminoimidazolecarboxamide formyltransferase (C-terminal) K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D XBJ1_3453 lpd; dihydrolipoamide dehydrogenase, FAD/NAD(P)-binding, component of the 2-oxoglutarate dehydrogenase and the pyruvate dehydrogenase complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D XBJ1_2233 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D XBJ1_4297 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D XBJ1_1038 gpmA; phosphoglyceromutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:xbo02048]
D XBJ1_3755 conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1
D XBJ1_3756 conserved hypothetical protein K09951 cas2; CRISPR-associated protein Cas2
D XBJ1_3749 ygcB; putative enzyme with 4 nucleoside triP hydrolase domains K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D XBJ1_3750 conserved hypothetical protein K19123 casA; CRISPR system Cascade subunit CasA
D XBJ1_3751 conserved hypothetical protein K19046 casB; CRISPR system Cascade subunit CasB
D XBJ1_3752 conserved hypothetical protein K19124 casC; CRISPR system Cascade subunit CasC
D XBJ1_3753 Complete genome; segment 3/17 K19125 casD; CRISPR system Cascade subunit CasD
D XBJ1_3754 conserved hypothetical protein K19126 casE; CRISPR system Cascade subunit CasE
D XBJ1_0015 HsdR protein K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D XBJ1_1415 DEAD/DEAH box helicase, N-terminal K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D XBJ1_0016 Type I restriction-modification enzyme subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D XBJ1_1412 Putative restriction-modification system specificity determinant K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D XBJ1_0017 Type I restriction-modification enzyme subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D XBJ1_1413 putative type I restriction enzyme M protein K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D XBJ1_0055 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D XBJ1_1254 conserved hypothetical protein K07319 yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D XBJ1_1261 conserved hypothetical protein K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]
D XBJ1_2040 Gp74 K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]
D XBJ1_1303 conserved hypothetical protein K19048 symE; toxic protein SymE
D XBJ1_1288 conserved hypothetical protein K19048 symE; toxic protein SymE
D XBJ1_3104 hypothetical protein K19048 symE; toxic protein SymE
D XBJ1_0440 chpA; putative mediates thymineless death, part of proteic killer gene system, growth inhibitor A K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D XBJ1_0442 chpR; mediates thymineless death, part of proteic killer gene system, suppressor of inhibitory function of ChpA K07172 mazE; antitoxin MazE
D XBJ1_1577 pemK; plasmid stable inheritance protein K18841 chpB; mRNA interferase ChpB [EC:3.1.-.-]
D XBJ1_1578 putative plasmid-related protein K18842 chpS; antitoxin ChpS
D XBJ1_3187 relE; Qin prophage; part of two-component toxin-antitoxin system with RelB, transcriptional corepressor of relBE operon K06218 relE; mRNA interferase RelE/StbE
D XBJ1_3188 relB; Qin prophage; part of two-component toxin-antitoxin system with RelE, transcriptional repressor of relBE operon K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D XBJ1_3078 Toxin yoeB K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D XBJ1_3077 Antitoxin yefM K19159 yefM; antitoxin YefM
D XBJ1_4308 conserved hypothetical protein K19160 yafO; mRNA interferase YafO [EC:3.1.-.-]
D XBJ1_1620 hha; hemolysin expression modulator K05839 hha; haemolysin expression modulating protein
D XBJ1_1619 conserved hypothetical protein K19162 tomB; hha toxicity modulator TomB
D XBJ1_2472 pspC; transcriptional activator of the psp operon with PspB, phage shock protein K03973 pspC; phage shock protein C
D XBJ1_2473 pspB; regulatory gene for expression of the psp operon with PspC, phage shock protein K03970 pspB; phage shock protein B
D XBJ1_4380 Death on curing protein K07341 doc; death on curing protein
D XBJ1_4379 putative Prevent-host-death protein K19165 phd; antitoxin Phd
D XBJ1_4384 putative Prevent-host-death protein K19165 phd; antitoxin Phd
D XBJ1_1256 putative proteic killer suppression protein K07334 higB-1; toxin HigB-1
D XBJ1_1255 putative proteic killer active protein K21498 higA-1; antitoxin HigA-1
D XBJ1_1285 PilT protein, N-terminal K07062 fitB; toxin FitB [EC:3.1.-.-]
D XBJ1_1230 putative regulatory protein K21495 fitA; antitoxin FitA
D XBJ1_1899 conserved hypothetical protein K12148 bssS; biofilm regulator BssS
D XBJ1_3471 ftsZ; tubulin-like GTP-binding protein and GTPase, forms circumferential ring in cell division K03531 ftsZ; cell division protein FtsZ
D XBJ1_3802 mreB; split gene in K-12 with ATPase domain, associated with mecillinam resistance, cell shape K03569 mreB; rod shape-determining protein MreB and related proteins
D XBJ1_1809 parC; DNA topoisomerase IV, subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D XBJ1_1810 parE; DNA topoisomerase IV, subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D XBJ1_3116 gltX; glutamate tRNA synthetase, catalytic subunit K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D XBJ1_1541 conserved hypothetical protein K19167 abiQ; protein AbiQ
D XBJ1_1837 Conserved Hypothetical protein, similar to toxin ypjF of E. coli K18837 cbtA; cytoskeleton-binding toxin CbtA and related proteins
D XBJ1_1464 conserved hypothetical protein K18837 cbtA; cytoskeleton-binding toxin CbtA and related proteins
D XBJ1_1565 conserved hypothetical protein K18837 cbtA; cytoskeleton-binding toxin CbtA and related proteins
D XBJ1_1838 hypothetical protein K18838 cbeA; cytoskeleton bundling-enhancing protein CbeA and related proteins
D XBJ1_3427 conserved hypothetical protein K19168 cptA; toxin CptA
D XBJ1_3428 conserved hypothetical protein K09159 cptB; antitoxin CptB
D XBJ1_3028 iscS; cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels [BR:xbo04040]
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:xbo04090]
C 01504 Antimicrobial resistance genes [BR:xbo01504]
D XBJ1_0011 hypothetical protein; putative membrane protein K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein
D XBJ1_3303 putative transporter K18553 cmlR; MFS transporter, DHA1 family, chloramphenicol resistance protein
D XBJ1_0801 Antibiotic acetyltransferase K00638 catB; chloramphenicol O-acetyltransferase type B [EC:2.3.1.28]
D XBJ1_0111 Chloramphenicol acetyltransferase K00638 catB; chloramphenicol O-acetyltransferase type B [EC:2.3.1.28]
D XBJ1_3432 putative methyl viologen resistance protein (MFS superfamily) K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein
D XBJ1_3236 Uncharacterized low-complexity protein (fragment) K18555 qnr; fluoroquinolone resistance protein
D XBJ1_2301 Beta-lactamase (Penicillinase) [Contains: Beta-lactamase form I; Beta-lactamase form II] K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D XBJ1_0395 putative D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D XBJ1_2836 phoQ; sensory histidine kinase in two-component regulatory system with PhoP, regulates gene expression at low [Mg+], senses Mg+ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D XBJ1_2835 phoP; response regulator in two-component regulatory system with PhoQ, regulates gene expression at low [Mg+] (OmpR family) K07660 phoP; two-component system, OmpR family, response regulator PhoP
D XBJ1_1617 acrA; component of acridine efflux pump K03585 acrA; membrane fusion protein, multidrug efflux system
D XBJ1_1618 acrB; multidrug efflux pump (RND family) K18138 acrB; multidrug efflux pump
D XBJ1_1594 cueR; transcriptional repressor for CopA a copper exporting ATPase (MerR family) K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D XBJ1_1814 tolC; outer membrane channel; tolerance to colicin E1, segregation of daughter chromosomes, role in organic solvent tolerance K12340 tolC; outer membrane protein
D XBJ1_0794 ompN; outer membrane pore protein N, non-specific K09476 ompF; outer membrane pore protein F
D XBJ1_1704 ompN; outer membrane pore protein N, non-specific K09476 ompF; outer membrane pore protein F
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:xbo00537]
D XBJ1_2271 Peptidase M19, renal dipeptidase precursor K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins [BR:xbo03200]
D XBJ1_0689 putative Rac prophage; prophage lambda endopeptidase K14744 rzpD; prophage endopeptidase [EC:3.4.-.-]
D XBJ1_2810 putative endopeptidase (Protein gp15) K14744 rzpD; prophage endopeptidase [EC:3.4.-.-]
D XBJ1_1203 putative Rac prophage; prophage lambda endopeptidase K14744 rzpD; prophage endopeptidase [EC:3.4.-.-]
D XBJ1_1259 conserved hypothetical protein; putative exported protein K14744 rzpD; prophage endopeptidase [EC:3.4.-.-]
D XBJ1_1386 putative endopeptidase K14744 rzpD; prophage endopeptidase [EC:3.4.-.-]
D XBJ1_2036 putative endopeptidase (Protein gp15) K14744 rzpD; prophage endopeptidase [EC:3.4.-.-]
D XBJ1_2798 conserved hypothetical protein K14744 rzpD; prophage endopeptidase [EC:3.4.-.-]
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:xbo03100]
D XBJ1_tRNA0009 AlaTGC; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D XBJ1_tRNA0054 AlaTGC; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D XBJ1_tRNA0076 AlaTGC; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D XBJ1_tRNA0067 AlaTGC; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D XBJ1_tRNA0047 AlaGGC; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D XBJ1_tRNA0046 AlaGGC; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D XBJ1_tRNA0019 ArgTCT; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D XBJ1_tRNA0073 ArgCCG; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D XBJ1_tRNA0027 ArgCCT; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D XBJ1_tRNA0056 ArgACG; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D XBJ1_tRNA0057 ArgACG; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D XBJ1_tRNA0058 ArgACG; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D XBJ1_tRNA0024 AsnGTT; tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D XBJ1_tRNA0026 AsnGTT; tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D XBJ1_tRNA0025 AsnGTT; tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D XBJ1_tRNA0023 AsnGTT; tRNA-Val K14220 tRNA-Asn; tRNA Asn
D XBJ1_tRNA0011 AspGTC; tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D XBJ1_tRNA0075 AspGTC; tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D XBJ1_tRNA0038 AspGTC; tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D XBJ1_tRNA0035 CysGCA; tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D XBJ1_tRNA0053 GlnCTG; tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D XBJ1_tRNA0050 GlnTTG; tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D XBJ1_tRNA0051 GlnTTG; tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D XBJ1_tRNA0001 GluTTC; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D XBJ1_tRNA0010 GluTTC; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D XBJ1_tRNA0083 GluTTC; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D XBJ1_tRNA0079 GlyTCC; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D XBJ1_tRNA0036 GlyGCC; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D XBJ1_tRNA0069 GlyGCC; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D XBJ1_tRNA0003 GlyGCC; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D XBJ1_tRNA0004 GlyGCC; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D XBJ1_tRNA0018 PseudoGCC; tRNA-Val K14225 tRNA-Gly; tRNA Gly
D XBJ1_tRNA0072 HisGTG; tRNA-His K14226 tRNA-His; tRNA His
D XBJ1_tRNA0008 IleGAT; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D XBJ1_tRNA0055 IleGAT; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D XBJ1_tRNA0068 IleGAT; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D XBJ1_tRNA0077 IleGAT; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D XBJ1_tRNA0005 LeuGAG; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D XBJ1_tRNA0049 LeuTAG; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D XBJ1_tRNA0007 LeuCAA; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D XBJ1_tRNA0061 LeuCAG; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D XBJ1_tRNA0062 LeuCAG; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D XBJ1_tRNA0071 LeuCAG; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D XBJ1_tRNA0034 LeuTAA; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D XBJ1_tRNA0016 LysTTT; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D XBJ1_tRNA0042 LysTTT; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D XBJ1_tRNA0041 LysTTT; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D XBJ1_tRNA0040 LysTTT; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D XBJ1_tRNA0017 LysTTT; tRNA-OTHER K14229 tRNA-Lys; tRNA Lys
D XBJ1_tRNA0052 MetCAT; tRNA-Met K14230 tRNA-Met; tRNA Met
D XBJ1_tRNA0048 MetCAT; tRNA-Met K14230 tRNA-Met; tRNA Met
D XBJ1_tRNA0022 MetCAT; tRNA-Met K14230 tRNA-Met; tRNA Met
D XBJ1_tRNA0006 MetCAT; tRNA-Met K14230 tRNA-Met; tRNA Met
D XBJ1_tRNA0063 MetCAT; tRNA-Met K14230 tRNA-Met; tRNA Met
D XBJ1_tRNA0064 MetCAT; tRNA-Met K14230 tRNA-Met; tRNA Met
D XBJ1_tRNA0065 MetCAT; tRNA-Met K14230 tRNA-Met; tRNA Met
D XBJ1_tRNA0021 PheGAA; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D XBJ1_tRNA0060 PheGAA; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D XBJ1_tRNA0012 PheGAA; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D XBJ1_tRNA0020 PheGAA; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D XBJ1_tRNA0028 PheGAA; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D XBJ1_tRNA0066 PheGAA; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D XBJ1_tRNA0002 ProTGG; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D XBJ1_tRNA0070 ProTGG; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D XBJ1_tRNA0037 ProGGG; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D XBJ1_tRNA0013 SerTGA; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D XBJ1_tRNA0059 SerGCT; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D XBJ1_tRNA0029 SerGGA; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D XBJ1_tRNA0030 SerGGA; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D XBJ1_tRNA0015 SerTGA; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D XBJ1_tRNA0081 ThrTGT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D XBJ1_tRNA0082 ThrGGT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D XBJ1_tRNA0078 ThrGGT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D XBJ1_tRNA0014 ThrTGT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D XBJ1_tRNA0074 TrpCCA; tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D XBJ1_tRNA0031 TyrGTA; tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D XBJ1_tRNA0080 TyrGTA; tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D XBJ1_tRNA0039 ValTAC; tRNA-Val K14237 tRNA-Val; tRNA Val
D XBJ1_tRNA0043 ValTAC; tRNA-Val K14237 tRNA-Val; tRNA Val
D XBJ1_tRNA0045 ValTAC; tRNA-Val K14237 tRNA-Val; tRNA Val
D XBJ1_tRNA0044 ValTAC; tRNA-Val K14237 tRNA-Val; tRNA Val
D XBJ1_tRNA0032 ValGAC; tRNA-Val K14237 tRNA-Val; tRNA Val
D XBJ1_tRNA0033 ValGAC; tRNA-Val K14237 tRNA-Val; tRNA Val
D XBJ1_rRNA0029 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XBJ1_rRNA0005 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XBJ1_rRNA0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XBJ1_rRNA0009 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XBJ1_rRNA0024 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XBJ1_rRNA0020 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XBJ1_rRNA0016 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D XBJ1_rRNA0007 LSU_RRNA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XBJ1_rRNA0018 LSU_RRNA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XBJ1_rRNA0022 LSU_RRNA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XBJ1_rRNA0011 LSU_RRNA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XBJ1_rRNA0027 LSU_RRNA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XBJ1_rRNA0003 LSU_RRNA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XBJ1_rRNA0014 LSU_RRNA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D XBJ1_0047 5S ribosomal RNA protein K01985 5SrRNA; 5S ribosomal RNA
D XBJ1_4012 5S ribosomal RNA protein K01985 5SrRNA; 5S ribosomal RNA
D XBJ1_4255 5S ribosomal RNA protein K01985 5SrRNA; 5S ribosomal RNA
D XBJ1_4200 5S ribosomal RNA protein K01985 5SrRNA; 5S ribosomal RNA
D XBJ1_0527 5S ribosomal RNA protein K01985 5SrRNA; 5S ribosomal RNA
D XBJ1_0629 5S ribosomal RNA protein K01985 5SrRNA; 5S ribosomal RNA
D XBJ1_3254 5S ribosomal RNA protein K01985 5SrRNA; 5S ribosomal RNA
D XBJ1_4254 5S ribosomal RNA protein K01985 5SrRNA; 5S ribosomal RNA
D XBJ1_misc_RNA0001 ssrA; RNA ssrA (tmRNA) K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D XBJ1_1718 dkgA; 2,5-diketo-D-gluconate reductase A K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D XBJ1_0312 putative oxyreductase protein K04090 E1.2.7.8; indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8]
D XBJ1_3871 fadH; 2,4-dienoyl-CoA reductase, NADH and FMN-linked K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]
D XBJ1_0412 hypothetical protein K06137 pqqC; pyrroloquinoline-quinone synthase [EC:1.3.3.11]
D XBJ1_3924 qor; quinone oxidoreductase, NADPH-dependent K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D XBJ1_2155 mdaB; flavoprotein modulator of drug activity B K03923 mdaB; NADPH dehydrogenase (quinone) [EC:1.6.5.10]
D XBJ1_2341 putative Azoreductase K03206 azr; azobenzene reductase [EC:1.7.1.6]
D XBJ1_2369 azoR; NADH-azoreductase, FMN-dependent K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17]
D XBJ1_0340 msrA; peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D XBJ1_2451 msrB; methionine sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D XBJ1_2956 yfcG; putative glutathione S-transferase enzyme with thioredoxin-like domain K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D XBJ1_2628 bcp; thiol peroxidase, thioredoxin-dependent K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D XBJ1_2467 tpx; thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D XBJ1_0072 Protein yhhW K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D XBJ1_3034 hmp; bifunctional: nitric oxide dioxygenase (N-terminal); dihydropteridine reductase 2 (C-terminal) K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17]
D XBJ1_3239 siderophore biosynthetic enzyme K27501 alcA; putrescine N-hydroxylase [EC:1.14.13.252]
D XBJ1_2557 ftnA; cytoplasmic ferritin (iron storage protein) K02217 ftnA; ferritin [EC:1.16.3.2]
D XBJ1_4293 fpr; ferredoxin-NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D XBJ1_2625 yfgD; putative arsenate reductase with thioredoxin-like domain K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D XBJ1_0822 pflA; pyruvate formate lyase activating enzyme 1 K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D XBJ1_3583 pcm; L-isoaspartate protein carboxylmethyltransferase type II K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D XBJ1_2500 cfa; cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase) K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D XBJ1_0137 putative Acetyltransferase, GNAT family K22441 paiA; diamine N-acetyltransferase [EC:2.3.1.57]
D XBJ1_3201 cutE; apolipoprotein N-acyltransferase, copper homeostasis protein, inner membrane K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D XBJ1_0388 yhbS; putative acyl-CoA N-acyltransferase K03824 yhbS; putative acetyltransferase [EC:2.3.1.-]
D XBJ1_1771 conserved hypothetical protein K03826 yiaC; putative acetyltransferase [EC:2.3.1.-]
D XBJ1_3874 yjaB; putative acyltransferase K03827 yjaB; putative acetyltransferase [EC:2.3.1.-]
D XBJ1_0429 putative acetyltransferase K03828 yjgM; putative acetyltransferase [EC:2.3.1.-]
D XBJ1_0895 aat; leucyl, phenylalanyl-tRNA-protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D XBJ1_3249 conserved hypothetical protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25]
D XBJ1_3690 lgt; phosphatidylglycerol-prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D XBJ1_3318 apbE; putative thiamin biosynthesis lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D XBJ1_2511 conserved hypothetical protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D XBJ1_1823 glnE; adenylyl transferase for glutamine synthetase, regulates P-II (GlnB) and GlnK K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D XBJ1_1470 reverse transcriptase-like protein (fragment) K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D XBJ1_1283 hypothetical protein K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D XBJ1_4007 aceK; isocitrate dehydrogenase kinase/phosphatase K00906 aceK; isocitrate dehydrogenase kinase/phosphatase [EC:2.7.11.5 3.1.3.-]
D XBJ1_1439 fes; ferric enterobactin esterase K07214 fes; iron(III)-enterobactin esterase [EC:3.1.1.108]
D XBJ1_1048 Acyl-CoA thioester hydrolase ybgC K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D XBJ1_1194 pphA; serine/threonine-specific protein phosphatase 1, signals protein misfolding K07313 pphA; serine/threonine protein phosphatase 1 [EC:3.1.3.16]
D XBJ1_2280 Protein trpH K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D XBJ1_2990 sixA; phosphohistidine phosphatase K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D XBJ1_2256 DNA-specific endonuclease I (modular protein) K01150 endA; deoxyribonuclease I [EC:3.1.21.1]
D XBJ1_3544 yjjV; putative hydrolase with metallo-dependent hydrolase domain K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D XBJ1_2850 ycfH; putative metallo-dependent hydrolase (with domain) K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D XBJ1_1076 ybfF; putative enzyme with alpha/beta-Hydrolase domain K01175 ybfF; esterase [EC:3.1.-.-]
D XBJ1_3298 yafA; putative hydrolase with alpha/beta-hydrolase domain K11750 frsA; esterase FrsA [EC:3.1.-.-]
D XBJ1_1202 putative lysozyme (Lysis protein) (Muramidase) (Endolysin) (P13) K01185 E3.2.1.17; lysozyme [EC:3.2.1.17]
D XBJ1_1387 ydfQ; putative Qin prophage; lysozyme K01185 E3.2.1.17; lysozyme [EC:3.2.1.17]
D XBJ1_1258 putative lysozyme (Lysis protein) (Muramidase) (Endolysin) (P13) K01185 E3.2.1.17; lysozyme [EC:3.2.1.17]
D XBJ1_2799 putative lysozyme (Lysis protein) (Muramidase) (Endolysin) (P13) (fragment) K01185 E3.2.1.17; lysozyme [EC:3.2.1.17]
D XBJ1_3087 putative Serine-type D-Ala-D-Ala carboxypeptidase K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
D XBJ1_4210 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D XBJ1_3499 peptide deformylase (fragment) K01462 PDF; peptide deformylase [EC:3.5.1.88]
D XBJ1_0156 Cyclic imide hydrolase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D XBJ1_0392 conserved hypothetical protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D XBJ1_1824 conserved hypothetical protein K18446 ygiF; triphosphatase [EC:3.6.1.25]
D XBJ1_2865 conserved hypothetical protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]
D XBJ1_0036 yieN; putative transcriptional regulator K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D XBJ1_0645 conserved hypothetical protein K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D XBJ1_0484 Catabolic threonine dehydratase K22589 thadh; threo-3-hydroxy-L-aspartate ammonia-lyase [EC:4.3.1.16]
D XBJ1_3709 csdA; cysteine sulfinate desulfinase K01766 csdA; cysteine sulfinate desulfinase [EC:4.4.1.-]
D XBJ1_0347 mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D XBJ1_0408 putative o-succinylbenzoate--CoA ligase K27292 avaA6; 3-aminoavenalumate diazotase [EC:6.7.1.2]
D XBJ1_2306 rsxD; putative oxidoreductase, transmembrane protein K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D XBJ1_2307 rsxC; putative NADH dehydrogenase subunit/oxidoreductase K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D XBJ1_2308 rsxB; putative 4Fe-4S ferredoxin-type protein K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D XBJ1_3324 Na(+)-translocating NADH-quinone reductase subunit A (Na(+)-translocating NQR subunit A) (Na(+)-NQR subunit A) (NQR complex subunit A) (NQR-1 subunit A) K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1]
D XBJ1_3323 Na(+)-translocating NADH-quinone reductase subunit B (Na(+)-translocating NQR subunit B) (Na(+)-NQR subunit B) (NQR complex subunit B) (NQR-1 subunit B) K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1]
D XBJ1_3322 Na(+)-translocating NADH-quinone reductase subunit C (Na(+)-translocating NQR subunit C) (Na(+)-NQR subunit C) (NQR complex subunit C) (NQR-1 subunit C) K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1]
D XBJ1_3321 rsxE; putative NADH-quinone reductase, membrane protein K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1]
D XBJ1_3320 rsxA; putative oxidoreductase, inner membrane protein K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1]
D XBJ1_3319 Na(+)-translocating NADH-quinone reductase subunit F (Na(+)-translocating NQR subunit F) (Na(+)-NQR subunit F) (NQR complex subunit F) (NQR-1 subunit F) K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1]
D XBJ1_0549 zntA; Pb/Cd/Zn/Hg transporting ATPase (P-type ATPase family) K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
C 99981 Carbohydrate metabolism
D XBJ1_3666 sfsA; transcriptional regulator of maltose metabolism K06206 sfsA; sugar fermentation stimulation protein A
C 99982 Energy metabolism
D XBJ1_4402 fdhD; formate dehydrogenase formation protein K02379 fdhD; FdhD protein
D XBJ1_3023 fdx; [2FE-2S] ferredoxin, electron carrier protein, believed to be involved in assembly of Fe-S clusters K04755 fdx; ferredoxin, 2Fe-2S
D XBJ1_0726 conserved hypothetical protein K11107 yfaE; ferredoxin
D XBJ1_2305 Electron transport complex protein rnfG K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D XBJ1_2304 rsxE; putative NADH-quinone reductase, membrane protein K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D XBJ1_2309 rsxA; putative oxidoreductase, inner membrane protein K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D XBJ1_0032 mioC; FMN-binding protein, required for biotin synthase activity K06205 mioC; MioC protein
D XBJ1_3426 fldB; flavodoxin 2 K03840 fldB; flavodoxin II
D XBJ1_3027 iscU; putative Fe-S assembly protein K04488 iscU; nitrogen fixation protein NifU and related proteins
D XBJ1_1107 fldA; flavodoxin K03839 fldA; flavodoxin I
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D XBJ1_3121 cysZ; required for sulfate transport K06203 cysZ; CysZ protein
D XBJ1_3342 yggS; putative enzyme with PLP-binding domain K06997 yggS; PLP dependent protein
D XBJ1_3872 GCN5-related N-acetyltransferase K22479 argA; N-acetyltransferase
C 99986 Glycan metabolism
D XBJ1_2297 Inner membrane protein yciS K08992 lapA; lipopolysaccharide assembly protein A
D XBJ1_2298 conserved hypothetical protein K19804 lapB; lipopolysaccharide assembly protein B
C 99987 Cofactor metabolism
D XBJ1_4163 hemY; protein in late step of protoheme IX synthesis with TPR-like domain K02498 hemY; HemY protein
D XBJ1_0508 ubiB; 2-octaprenylphenol hydroxylase of ubiquinone biosynthetic pathway K03688 ubiB; ubiquinone biosynthesis protein
D XBJ1_0507 conserved hypothetical protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D XBJ1_1821 conserved hypothetical protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
D XBJ1_0387 yhbT; putative sterol carrier protein, SCP K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT
D XBJ1_4100 mobB; molybdopterin-guanine dinucleotide biosynthesis protein B, GTP-binding K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
C 99988 Secondary metabolism
D XBJ1_1807 sufI; repressor protein for FtsI with three cupredoxin-like domains K04753 sufI; suppressor of ftsI
C 99999 Others
D XBJ1_3864 yqjF; putative membrane protein K15977 K15977; putative oxidoreductase
D XBJ1_0403 conserved hypothetical protein; putative membrane protein K15977 K15977; putative oxidoreductase
D XBJ1_3250 yfiQ; putative acyl-CoA synthetase, NAD(P)-binding, ATP-binding K09181 yfiQ; acetyltransferase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D XBJ1_3812 conserved hypothetical protein K03623 yhcO; ribonuclease inhibitor
D XBJ1_0716 cspB; Qin prophage; cold shock protein K03704 cspA; cold shock protein
D XBJ1_1908 cspC; cold shock protein, transcription antiterminator, affects expression of rpoS and uspA K03704 cspA; cold shock protein
D XBJ1_0900 cspD; DNA replication inhibitor, nucleic acid-binding domain K03704 cspA; cold shock protein
D XBJ1_3575 cspG; low-temperature-responsive gene, nucleic acid-binding domain K03704 cspA; cold shock protein
D XBJ1_3221 cspE; RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA K03704 cspA; cold shock protein
D XBJ1_2741 cspC; cold shock protein, transcription antiterminator, affects expression of rpoS and uspA K03704 cspA; cold shock protein
D XBJ1_0705 putative anti-repressor protein K07741 antB; anti-repressor protein
D XBJ1_1623 glnK; regulatory protein (P-II 2) for nitrogen assimilation, regulates GlnL (NRII), GlnE (ATase), and AmtB (ammonium transporter) K04752 glnK; nitrogen regulatory protein P-II 2
D XBJ1_0184 Protein yhgF K06959 tex; protein Tex
C 99974 Translation
C 99975 Protein processing
D XBJ1_2374 hslJ; heat shock protein hslJ K03668 hslJ; heat shock protein HslJ
D XBJ1_0899 clpS; modulator of ClpA substrate specificity K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D XBJ1_1638 tig; peptidyl-prolyl cis/trans isomerase (trigger factor), molecular chaperone involved in cell division K03545 tig; trigger factor
D XBJ1_3165 smpB; trans-translation protein, binds tmRNA and tRNA K03664 smpB; SsrA-binding protein
D XBJ1_4196 yifB; putative enzyme (N-terminal); transcriptional regulator with P-loop containing NTP hydrolase domain (C-terminal) K07391 comM; magnesium chelatase family protein
D XBJ1_0143 nfuA; Fe/S biogenesis protein K07400 nfuA; Fe/S biogenesis protein NfuA
C 99976 Replication and repair
D XBJ1_0576 xni; exonuclease IX, 5'-3' exonuclease K01146 xni; protein Xni
D XBJ1_2803 conserved hypothetical protein K07454 K07454; putative restriction endonuclease
D XBJ1_0475 hypothetical protein K07454 K07454; putative restriction endonuclease
D XBJ1_4361 yicR; putative associated with replication fork, DNA repair protein K03630 radC; DNA repair protein RadC
D XBJ1_1840 yfjY; putative CP4-57 prophage; DNA repair protein K03630 radC; DNA repair protein RadC
D XBJ1_0505 DNA recombination protein RmuC K09760 rmuC; DNA recombination protein RmuC
D XBJ1_1414 putative DNA recombination protein; exported protein K09760 rmuC; DNA recombination protein RmuC
D XBJ1_1856 conserved hypothetical protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D XBJ1_3859 conserved hypothetical protein K07460 yraN; putative endonuclease
D XBJ1_0389 conserved hypothetical protein K07461 K07461; putative endonuclease
D XBJ1_4209 Protein smf K04096 smf; DNA processing protein
D XBJ1_1786 fimB; tyrosine recombinase, regulator of fimA K07357 fimB; type 1 fimbriae regulatory protein FimB
D XBJ1_3623 fimB; tyrosine recombinase, regulator of fimA K07357 fimB; type 1 fimbriae regulatory protein FimB
D XBJ1_0378 fimB; tyrosine recombinase, regulator of fimA K07357 fimB; type 1 fimbriae regulatory protein FimB
D XBJ1_1096 fimB; fimbriae regulatory protein K07357 fimB; type 1 fimbriae regulatory protein FimB
D XBJ1_1103 fimB; fimbriae regulatory protein K07357 fimB; type 1 fimbriae regulatory protein FimB
D XBJ1_3532 fimB; tyrosine recombinase, regulator of fimA K07357 fimB; type 1 fimbriae regulatory protein FimB
D XBJ1_1210 putative Terminase small subunit (G1P) K07474 xtmA; phage terminase small subunit
D XBJ1_0887 rarA; putative polynucleotide enzyme with nucleotide triphosphate hydrolase domain K07478 ycaJ; putative ATPase
D XBJ1_4208 yrdD; putative DNA topoisomerase K07479 yrdD; putative DNA topoisomerase
D XBJ1_0699 putative prophage primase K06919 K06919; putative DNA primase/helicase
D XBJ1_3970 conserved hypothetical protein K06919 K06919; putative DNA primase/helicase
D XBJ1_2668 putative phage primase K06919 K06919; putative DNA primase/helicase
D XBJ1_4376 Putative inner membrane protein (modular protein) K06919 K06919; putative DNA primase/helicase
D XBJ1_1318 putative prophage primase K06919 K06919; putative DNA primase/helicase
D XBJ1_2028 conserved hypothetical protein K06919 K06919; putative DNA primase/helicase
D XBJ1_1883 Putative prophage primase (fragment) K06919 K06919; putative DNA primase/helicase
D XBJ1_3365 Putative prophage primase (fragment) K06919 K06919; putative DNA primase/helicase
D XBJ1_3109 Insertion element iso-IS1n protein insB K07480 insB; insertion element IS1 protein InsB
D XBJ1_0149 Insertion element iso-IS1n protein insB K07480 insB; insertion element IS1 protein InsB
D XBJ1_3194 Insertion element IS1 2/3 protein insB K07480 insB; insertion element IS1 protein InsB
D XBJ1_3412 Insertion element iso-IS1n protein insB K07480 insB; insertion element IS1 protein InsB
D XBJ1_0300 Insertion element IS1 1/5/6 protein insB K07480 insB; insertion element IS1 protein InsB
D XBJ1_4306 Insertion element IS1 1/5/6 protein insB K07480 insB; insertion element IS1 protein InsB
D XBJ1_1134 hypothetical protein K07480 insB; insertion element IS1 protein InsB
D XBJ1_1407 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_1409 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_1321 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_1428 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_0161 transposase K07480 insB; insertion element IS1 protein InsB
D XBJ1_0285 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_1881 hypothetical protein K07480 insB; insertion element IS1 protein InsB
D XBJ1_0749 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_0461 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_0710 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_0882 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_0860 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_0862 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_1790 Insertion element IS1 2/3 protein insB K07480 insB; insertion element IS1 protein InsB
D XBJ1_0647 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_1583 insB; Insertion element protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_1708 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_1734 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_1754 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_1760 conserved hypothetical protein K07480 insB; insertion element IS1 protein InsB
D XBJ1_1761 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_1765 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_1853 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_1872 Insertion element iso-IS1n protein insB K07480 insB; insertion element IS1 protein InsB
D XBJ1_1983 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_1985 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_2391 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_2602 Insertion element iso-IS1n protein insB K07480 insB; insertion element IS1 protein InsB
D XBJ1_2574 Insertion element iso-IS1n protein insB K07480 insB; insertion element IS1 protein InsB
D XBJ1_2661 insB; insertion element protein (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_2681 Insertion element IS1 1/5/6 protein insB K07480 insB; insertion element IS1 protein InsB
D XBJ1_2683 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_2083 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_2090 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_3292 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_3171 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_3313 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_3356 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_3364 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_3405 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_3408 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_3273 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_2190 Insertion element iso-IS1n protein insB K07480 insB; insertion element IS1 protein InsB
D XBJ1_2818 hypothetical protein K07480 insB; insertion element IS1 protein InsB
D XBJ1_2820 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_2132 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_2171 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_3547 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_3592 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_3595 Insertion element IS1 2/3 protein insB K07480 insB; insertion element IS1 protein InsB
D XBJ1_3057 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_2969 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_3712 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_3771 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_3777 Insertion element iso-IS1n protein insB K07480 insB; insertion element IS1 protein InsB
D XBJ1_3778 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_3782 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_3892 transposase (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_3908 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_3921 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_4082 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_4120 Insertion element iso-IS1n protein insB (fragment) K07480 insB; insertion element IS1 protein InsB
D XBJ1_0434 transposase K07482 K07482; transposase, IS30 family
D XBJ1_1349 transposase K07482 K07482; transposase, IS30 family
D XBJ1_1740 transposase K07482 K07482; transposase, IS30 family
D XBJ1_2429 transposase K07482 K07482; transposase, IS30 family
D XBJ1_3918 transposase K07482 K07482; transposase, IS30 family
D XBJ1_1137 putative transposase (fragment) K07483 K07483; transposase
D XBJ1_1376 conserved hypothetical protein K07483 K07483; transposase
D XBJ1_0625 transposase (fragment) K07483 K07483; transposase
D XBJ1_2787 putative transposase K07483 K07483; transposase
D XBJ1_3107 conserved hypothetical protein K07483 K07483; transposase
D XBJ1_1559 putative transposase K07484 K07484; transposase
D XBJ1_1560 putative transposase (IS66 family element-like) K07484 K07484; transposase
D XBJ1_0287 transposase (fragment) K07484 K07484; transposase
D XBJ1_0288 transposase K07484 K07484; transposase
D XBJ1_0284 transposase (fragment) K07484 K07484; transposase
D XBJ1_0770 transposase K07484 K07484; transposase
D XBJ1_0771 transposase K07484 K07484; transposase
D XBJ1_0772 transposase (fragment) K07484 K07484; transposase
D XBJ1_1575 putative transposase (fragment) K07484 K07484; transposase
D XBJ1_0715 transposase K07486 K07486; transposase
D XBJ1_4300 transposase K07486 K07486; transposase
D XBJ1_4126 transposase K07486 K07486; transposase
D XBJ1_3179 transposase K07486 K07486; transposase
D XBJ1_1405 transposase K07486 K07486; transposase
D XBJ1_1330 transposase K07486 K07486; transposase
D XBJ1_1980 transposase (fragment) K07486 K07486; transposase
D XBJ1_1871 Insertion element IS1 1/2/3/5/6 protein insA (IS1a/IS1b/IS1c/IS1d) K07489 K07489; transposase
D XBJ1_2573 Insertion element IS1 1/2/3/5/6 protein insA (IS1a/IS1b/IS1c/IS1d) K07489 K07489; transposase
D XBJ1_2603 Insertion element IS1 1/2/3/5/6 protein insA (IS1a/IS1b/IS1c/IS1d) K07489 K07489; transposase
D XBJ1_3110 Insertion element IS1 1/2/3/5/6 protein insA (IS1a/IS1b/IS1c/IS1d) K07489 K07489; transposase
D XBJ1_3413 Insertion element iso-IS1N protein insA K07489 K07489; transposase
D XBJ1_2295 transposase (fragment) K07491 rayT; REP-associated tyrosine transposase
D XBJ1_2679 transposase (fragment) K07491 rayT; REP-associated tyrosine transposase
D XBJ1_3184 transposase (fragment) K07491 rayT; REP-associated tyrosine transposase
D XBJ1_1377 transposase (fragment) K07497 K07497; putative transposase
D XBJ1_1378 transposase (fragment) K07497 K07497; putative transposase
D XBJ1_0162 transposase (fragment) K07497 K07497; putative transposase
D XBJ1_0624 transposase (fragment) K07497 K07497; putative transposase
D XBJ1_2786 transposase K07497 K07497; putative transposase
D XBJ1_0876 transposase (fragment) K07498 K07498; putative transposase
D XBJ1_2387 transposase (fragment) K07498 K07498; putative transposase
D XBJ1_2615 transposase K07498 K07498; putative transposase
D XBJ1_2618 transposase K07498 K07498; putative transposase
D XBJ1_2685 transposase K07498 K07498; putative transposase
D XBJ1_2094 transposase K07498 K07498; putative transposase
D XBJ1_2911 transposase (fragment) K07498 K07498; putative transposase
C 99979 Viral proteins
C 99998 Others
D XBJ1_2474 pspA; negative regulatory gene for the psp opreon, phage shock protein K03969 pspA; phage shock protein A
D XBJ1_1610 conserved hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D XBJ1_4166 yifK; putative amino-acid transport protein (APC family) K03293 TC.AAT; amino acid transporter, AAT family
D XBJ1_2937 cycA; D-alanine/D-serine/glycine transport protein (APC family) K03293 TC.AAT; amino acid transporter, AAT family
D XBJ1_2120 yhiP; putative peptide transport protein (POT family) K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D XBJ1_0879 Transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D XBJ1_1937 putative alanine/glycine transport protein (AGCS family) K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D XBJ1_2747 yaaJ; putative alanine/glycine transport protein (AGCS family) K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D XBJ1_1685 brnQ; branched-chain amino acid transport system II (LIV-II) (LIVCS family) K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D XBJ1_4388 Cytosine/purines, uracil, thiamine, allantoin permease family protein (modular protein) K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family
D XBJ1_3543 nupX; putative transport protein (NUP family) K03317 TC.CNT; concentrative nucleoside transporter, CNT family
C 99978 Cell growth
D XBJ1_2412 yciB; putative membrane protein, intracellular septation protein K06190 ispZ; intracellular septation protein
D XBJ1_4334 envC; periplasmic protease K22719 envC; murein hydrolase activator
C 99993 Cell motility
D XBJ1_2848 ycfM; putative fibronectin-binding protein K07337 K07337; penicillin-binding protein activator
D XBJ1_0776 conserved hypothetical protein K07343 tfoX; DNA transformation protein and related proteins
D XBJ1_0580 syd; interacts with secY K15723 syd; SecY interacting protein Syd
C 99995 Signaling proteins
D XBJ1_3457 ampE; putative transmembrane protein, protease K03807 ampE; AmpE protein
D XBJ1_1781 terA; tellurium resistance protein K05792 terA; tellurite resistance protein TerA
D XBJ1_1784 terD; tellurium resistance protein K05795 terD; tellurium resistance protein TerD
D XBJ1_1785 terE; tellurium resistance protein K05795 terD; tellurium resistance protein TerD
D XBJ1_1780 terZ; tellurium resistance protein K05791 terZ; tellurium resistance protein TerZ
D XBJ1_2552 proQ; putative structural element which influences activation of ProP K03607 proQ; ProP effector
D XBJ1_0090 uspA; universal stress protein A, possibly linked to resistance to DNA-damage and respiratory uncoupling K06149 uspA; universal stress protein A
D XBJ1_2354 Universal stress protein E K14055 uspE; universal stress protein E
D XBJ1_2253 uspG; universal stress protein UP12, flavoprotein, ETFP adenine nucleotide-binding domain K11932 uspG; universal stress protein G
D XBJ1_0224 typA; GTP-binding elongation factor family protein with P-loop containing NTP hydrolase domain K06207 typA; GTP-binding protein
D XBJ1_2100 conserved hypothetical protein (probable component of SST VI cluster) K07169 K07169; FHA domain-containing protein
D XBJ1_3198 ybeZ; putative phosphate starvation-inducible protein (ATP-binding) with P-loop containing NTP hydrolase domain K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D XBJ1_1826 ecfG; putative membrane protein K07184 ygiM; SH3 domain protein
D XBJ1_3530 ytjB; membrane protein, transcribed divergently from serB K07186 smp; membrane protein
D XBJ1_1653 conserved hypothetical protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D XBJ1_0888 lolA; periplasmic chaperone effects translocation of lipoproteins from inner membrane to outer membrane K03634 lolA; outer membrane lipoprotein carrier protein
D XBJ1_2200 lolB; outer membrane component involved in lipoprotein localization K02494 lolB; outer membrane lipoprotein LolB
D XBJ1_2996 vacJ; lipoprotein precursor K04754 mlaA; phospholipid-binding lipoprotein MlaA
D XBJ1_4177 wzzE; modulator of enterobacterial common antigen (ECA) polysaccharide chain length K05790 wzzE; lipopolysaccharide biosynthesis protein WzzE
D XBJ1_2489 slyB; putative outer membrane lipoprotein K06077 slyB; outer membrane lipoprotein SlyB
D XBJ1_0598 skp; periplasmic molecular chaperone for outer membrane proteins K06142 hlpA; outer membrane protein
D XBJ1_3582 nlpD; lipoprotein K06194 nlpD; lipoprotein NlpD
D XBJ1_0373 nlpI; NlpI lipoprotein believed to be involved in cell division with transferase domain K05803 nlpI; lipoprotein NlpI
D XBJ1_2270 ompW; putative outer membrane protein W; colicin S4 receptor; transport protein K07275 ompW; outer membrane protein
D XBJ1_4406 conserved hypothetical protein K07280 K07280; outer membrane protein
D XBJ1_2239 yeaY; putative membrane protein K07285 slp; outer membrane lipoprotein
D XBJ1_1641 yajG; putative lipoprotein K07286 yajG; uncharacterized lipoprotein
D XBJ1_0931 asmA; suppressor of ompF assembly mutants K07289 asmA; AsmA protein
D XBJ1_1593 Inner membrane protein ybbJ K07340 ybbJ; inner membrane protein
D XBJ1_3008 putative HTH-type transcriptional regulator yfgA K15539 rodZ; cytoskeleton protein RodZ
C 99994 Others
D XBJ1_0192 phoU; transcriptional repressor for high-affinity phosphate uptake K02039 phoU; phosphate transport system protein
D XBJ1_4244 bfd; regulatory or redox component complexing with Bfr, in iron storage and mobility K02192 bfd; bacterioferritin-associated ferredoxin
D XBJ1_1782 putative Tellurite resistance protein (tellurium resistance protein) K05793 terB; tellurite resistance protein TerB
D XBJ1_1783 Tellurium resistance protein terC K05794 terC; tellurite resistance protein TerC
D XBJ1_2257 cutC; copper homeostasis protein K06201 cutC; copper homeostasis protein
D XBJ1_1803 Protein apaG K06195 apaG; ApaG protein
D XBJ1_4157 Protein cyaY K06202 cyaY; iron-sulfur cluster assembly protein CyaY
D XBJ1_2514 Hemin transport protein hmuS K07225 hmuS; putative hemin transport protein
B
B 09194 Poorly characterized
C 99996 General function prediction only
D XBJ1_2960 cvpA; membrane protein required for colicin V production K03558 cvpA; membrane protein required for colicin V production
D XBJ1_3711 Protein bax K03796 bax; Bax protein
D XBJ1_0784 pqiB; paraquat-inducible protein B K06192 pqiB; paraquat-inducible protein B
D XBJ1_3253 conserved hypothetical protein K05811 yfiM; putative lipoprotein
D XBJ1_3548 Osmotically inducible protein Y K04065 osmY; hyperosmotically inducible periplasmic protein
D XBJ1_0856 Protein secretion chaperonin K06878 K06878; tRNA-binding protein
D XBJ1_1748 conserved hypothetical protein K06886 glbN; hemoglobin
D XBJ1_3660 conserved hypothetical protein K15724 erpA; iron-sulfur cluster insertion protein
D XBJ1_2548 ydjM; putative LexA regulated gene, SOS response K07038 K07038; inner membrane protein
D XBJ1_0133 putative phosphotriesterase with metallo-dependent hydrolase domain (modular protein) K07048 PTER; phosphotriesterase-related protein
D XBJ1_0257 yhjD; putative membrane protein K07058 K07058; membrane protein
D XBJ1_3572 fxsA; suppress F exclusion of bacteriophage T7 K07113 fxsA; UPF0716 protein FxsA
D XBJ1_3708 conserved hypothetical protein K02426 sufE; cysteine desulfuration protein SufE
D XBJ1_1897 conserved hypothetical protein K07146 K07146; UPF0176 protein
D XBJ1_2832 conserved hypothetical protein K07153 hflD; high frequency lysogenization protein
D XBJ1_2187 putative Arsenical resistance protein ArsH K11811 arsH; arsenical resistance protein ArsH
D XBJ1_3240 Ferric iron reductase protein FhuF K13255 fhuF; ferric iron reductase protein FhuF
D XBJ1_4071 Protein slyX K03745 slyX; SlyX protein
D XBJ1_3518 Protein creA K05805 creA; CreA protein
D XBJ1_3644 Protein sprT K02742 sprT; SprT protein
D XBJ1_2961 Protein dedD K03749 dedD; DedD protein
D XBJ1_0056 damX; putative membrane protein K03112 damX; DamX protein
D XBJ1_0942 sanA; putative vancomycin sensitivity, oxidoreductase K03748 sanA; SanA protein
D XBJ1_2964 dedA; putative integral membrane protein K03975 dedA; membrane-associated protein
D XBJ1_0785 pqiA; paraquat-inducible protein A, membrane K03808 pqiA; paraquat-inducible protein A
D XBJ1_2470 ycjF; putative membrane protein K08990 ycjF; putative membrane protein
D XBJ1_0550 conserved hypothetical protein; putative membrane protein K08993 yhhL; putative membrane protein
D XBJ1_2437 conserved hypothetical protein K09858 K09858; SEC-C motif domain protein
D XBJ1_4050 malM; periplasmic protein of mal regulon K05775 malM; maltose operon periplasmic protein
D XBJ1_0963 putative alkylphosphonate uptake protein in phosphonate metabolism (fragment) K06193 phnA; protein PhnA
C 99997 Function unknown
D XBJ1_2754 hypothetical protein; putative exported protein K06867 K06867; uncharacterized protein
D XBJ1_3358 conserved hypothetical protein K06887 K06887; uncharacterized protein
D XBJ1_0172 conserved hypothetical protein K06887 K06887; uncharacterized protein
D XBJ1_0658 putative Haemolysin co-regulated protein (putative Hcp) K06887 K06887; uncharacterized protein
D XBJ1_2665 putative haemolysin co-regulated protein (Hcp-like) K06887 K06887; uncharacterized protein
D XBJ1_3710 hypothetical protein K06887 K06887; uncharacterized protein
D XBJ1_0074 conserved hypothetical protein K06887 K06887; uncharacterized protein
D XBJ1_0975 ybhL; putative transport protein K06890 K06890; uncharacterized protein
D XBJ1_1384 Baseplate assembly protein W (GpW) K06903 W; Bacteriophage baseplate protein W
D XBJ1_1363 putative phage protein (D protein) (modular protein) K06905 D; Bacteriophage probable baseplate hub protein
D XBJ1_1364 Putative phage tail protein K06906 gpU; phage tail protein
D XBJ1_1369 Major tail sheath protein (Protein FI) K06907 FI; Bacteriophage tail sheath protein
D XBJ1_1368 Major tail tube protein (Protein FII) K06908 FII; Bacteriophage tail tube protein
D XBJ1_2471 conserved hypothetical protein K06918 K06918; uncharacterized protein
D XBJ1_3114 ykgJ; putative ferredoxin K06940 K06940; uncharacterized protein
D XBJ1_1847 ykfA; putative CP4-6 prophage; GTP-binding factor K06946 K06946; uncharacterized protein
D XBJ1_3043 conserved hypothetical protein K06950 K06950; uncharacterized protein
D XBJ1_2549 ydjN; putative transport protein K06956 K06956; uncharacterized protein
D XBJ1_3556 conserved hypothetical protein K06995 K06995; uncharacterized protein
D XBJ1_1811 yqiA; putative enzyme with alpha/beta-hydrolase-like domain K07000 K07000; uncharacterized protein
D XBJ1_2901 yejM; putative phosphatase/sulphatase K07014 K07014; uncharacterized protein
D XBJ1_1743 yaaH; putative regulator, integral membrane protein K07034 K07034; uncharacterized protein
D XBJ1_2178 hypothetical protein K07045 K07045; uncharacterized protein
D XBJ1_4074 conserved hypothetical protein K07070 K07070; uncharacterized protein
D XBJ1_2957 yfcH; putative cell division inhibitor, NAD(P)-binding K07071 K07071; uncharacterized protein
D XBJ1_0418 conserved hypothetical protein K07074 K07074; uncharacterized protein
D XBJ1_2980 yfcA; putative membrane protein K07090 K07090; uncharacterized protein
D XBJ1_0335 Protein ytfJ precursor K07109 K07109; uncharacterized protein
D XBJ1_3860 yraM; putative enzyme with 3 periplasmic binding protein-like domains K07121 K07121; uncharacterized protein
D XBJ1_0858 putative Beta-lactamase K07126 K07126; uncharacterized protein
D XBJ1_3920 conserved hypothetical protein K07126 K07126; uncharacterized protein
D XBJ1_0018 ATPase, AAA+ superfamily K07133 K07133; uncharacterized protein
D XBJ1_2261 yecN; putative membrane protein K07136 K07136; uncharacterized protein
D XBJ1_0788 ycbX; putative 2Fe-2S protein with ferredoxin-like NADP-linked domain and 2Fe-2S ferredoxin-like domain K07140 K07140; MOSC domain-containing protein
D XBJ1_0943 yeiB; putative flavoprotein K07148 K07148; uncharacterized protein
D XBJ1_4411 conserved hypothetical protein K08998 K08998; uncharacterized protein
D XBJ1_3216 conserved hypothetical protein K09158 K09158; uncharacterized protein
D XBJ1_2378 conserved hypothetical protein K09160 K09160; uncharacterized protein
D XBJ1_4034 conserved hypothetical protein K09702 K09702; uncharacterized protein
D XBJ1_0100 conserved hypothetical protein K09768 K09768; uncharacterized protein
D XBJ1_0808 Protein ycaR K09791 K09791; uncharacterized protein
D XBJ1_1361 conserved hypothetical protein K09794 K09794; uncharacterized protein
D XBJ1_3715 conserved hypothetical protein K09795 K09795; uncharacterized protein
D XBJ1_4335 conserved hypothetical protein; putative exported protein K09798 K09798; uncharacterized protein
D XBJ1_3163 conserved hypothetical protein K09801 K09801; uncharacterized protein
D XBJ1_2869 conserved hypothetical protein K09802 K09802; uncharacterized protein
D XBJ1_3447 conserved hypothetical protein; putative exported protein K09807 K09807; uncharacterized protein
D XBJ1_3873 conserved hypothetical protein K09824 virK; uncharacterized protein
D XBJ1_3317 conserved hypothetical protein; putative exported protein K05952 K05952; uncharacterized protein
D XBJ1_0783 conserved hypothetical protein; putative exported protein K09857 K09857; uncharacterized protein
D XBJ1_3512 yaaA; putative membrane protein K09861 K09861; uncharacterized protein
D XBJ1_3464 conserved hypothetical protein K09862 K09862; uncharacterized protein
D XBJ1_4022 conserved hypothetical protein K09891 K09891; uncharacterized protein
D XBJ1_0207 putative cytoplasmic protein K09894 K09894; uncharacterized protein
D XBJ1_3440 conserved hypothetical protein K09895 K09895; uncharacterized protein
D XBJ1_4197 yifE; putative transcriptional regulator with pssR K09897 K09897; uncharacterized protein
D XBJ1_4087 conserved hypothetical protein K09898 K09898; uncharacterized protein
D XBJ1_2933 putative cytoplasmic protein K09899 K09899; uncharacterized protein
D XBJ1_2418 conserved hypothetical protein K09901 K09901; uncharacterized protein
D XBJ1_2382 Protein ycgL K09902 K09902; uncharacterized protein
D XBJ1_2900 conserved hypothetical protein K09904 K09904; uncharacterized protein
D XBJ1_2223 Protein yecM K09907 K09907; uncharacterized protein
D XBJ1_3841 putative cytochrome d ubiquinol oxidase subunit III (Cytochrome bd-I oxidase subunit III) K09908 K09908; uncharacterized protein
D XBJ1_3451 conserved hypothetical protein K09910 K09910; uncharacterized protein
D XBJ1_0779 putative cytoplasmic protein K09911 K09911; uncharacterized protein
D XBJ1_2450 conserved hypothetical protein K09916 K09916; uncharacterized protein
D XBJ1_2561 conserved hypothetical protein K09917 K09917; uncharacterized protein
D XBJ1_4154 conserved hypothetical protein K09921 K09921; uncharacterized protein
D XBJ1_3350 conserved hypothetical protein K09923 K09923; uncharacterized protein
D XBJ1_3117 conserved hypothetical protein K09954 K09954; uncharacterized protein
D XBJ1_1212 putative Gp5 K09961 K09961; uncharacterized protein
D XBJ1_1596 conserved hypothetical protein K09973 K09973; uncharacterized protein
D XBJ1_2128 putative cold-shock induced protein K09975 K09975; uncharacterized protein
D XBJ1_2370 conserved hypothetical protein; putative exported protein K09978 K09978; uncharacterized protein
D XBJ1_0391 conserved hypothetical protein K09979 K09979; uncharacterized protein
!
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 5, 2024