+F Repair protein KO #

  DNA Repair and Recombination Proteins - Xenorhabdus bovienii SS-2004

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D XBJ1_3222 ogt; methylated-DNA--protein-cysteine methyltransferase (6-O-methylguanine-DNA methyltransferase) (O-6-methylguanine-DNA-alkyltransferase) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E XBJ1_3158 ung; uracil-DNA-glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E XBJ1_3352 mutY; adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E XBJ1_2303 nth; endonuclease III; DNA glycosylase/apyrimidinic (AP) lyase, acts on 5-formyluracil and 5-hydroxymethyluracil K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D XBJ1_3465 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D XBJ1_2886 Nudix hydrolase 1 (AtNUDT1) (NADH pyrophosphatase) (DHNTP pyrophosphohydrolase) (Dihydroneopterin triphosphate pyrophosphohydrolase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D XBJ1_4363 dut; deoxyuridinetriphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D XBJ1_3222 ogt; methylated-DNA--protein-cysteine methyltransferase (6-O-methylguanine-DNA methyltransferase) (O-6-methylguanine-DNA-alkyltransferase) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E XBJ1_3158 ung; uracil-DNA-glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E XBJ1_3045 putative DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E XBJ1_3352 mutY; adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E XBJ1_0242 tag; 3-methyl-adenine DNA glycosylase I, constitutive K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E XBJ1_4352 mutM; formamidopyrimidine DNA glycosylase, also acts on 5-formyluracil and 5-hydroxymethyluracil K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E XBJ1_2303 nth; endonuclease III; DNA glycosylase/apyrimidinic (AP) lyase, acts on 5-formyluracil and 5-hydroxymethyluracil K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E XBJ1_2442 xthA; exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E XBJ1_2883 nfo; endonuclease IV, with intrinsic 3'-5' exonuclease activity K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E XBJ1_4023 nfi; endonuclease V (deoxyinosine 3'endoduclease) K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E XBJ1_3423 recJ; ssDNA exonuclease, 5'--> 3'-specific, Mg-dependent K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E XBJ1_0236 DNA ligase (modular protein) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E XBJ1_3119 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E XBJ1_4096 polA; multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E XBJ1_3903 uvrA; DNA excision repair enzyme subunit, with UvrBC K03701 uvrA; excinuclease ABC subunit A E XBJ1_0981 uvrB; ATP-dependent DNA excision repair enzyme UvrAC K03702 uvrB; excinuclease ABC subunit B E XBJ1_2675 uvrC; DNA exisiton repair enzyme together with UvrAB K03703 uvrC; excinuclease ABC subunit C E XBJ1_4151 uvrD; DNA-dependent ATPase I and helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E XBJ1_4096 polA; multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) K02335 polA; DNA polymerase I [EC:2.7.7.7] E XBJ1_0236 DNA ligase (modular protein) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E XBJ1_3119 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F XBJ1_4054 rpoB; RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F XBJ1_4053 rpoC; RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F XBJ1_4217 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F XBJ1_0234 rpoZ; RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F XBJ1_2843 mfd; transcription-repair ATP-dependent coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E XBJ1_3579 mutS; methyl-directed mismatch repair, recognizes exocyclic adducts of guanosine K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E XBJ1_0319 mutL; enzyme in methyl-directed mismatch repair, stimulates binding of Vsr and MutS to heteroduplex DNA K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E XBJ1_3495 mutH; putative methyl-directed mismatch repair protein with restriction endonuclease-like domain K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E XBJ1_2870 sbcB; exonuclease I, 3'--> 5'-specific; deoxyribophosphodiesterase K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E XBJ1_2585 xseA; exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E XBJ1_1657 xseB; exonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E XBJ1_0604 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E XBJ1_0002 dnaN; DNA polymerase III, beta-subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E XBJ1_0445 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E XBJ1_3208 holA; DNA polymerase III, delta subunit, probably ATP hydrolase K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E XBJ1_2851 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E XBJ1_0654 putative DNA-directed DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E XBJ1_3075 dnaQ; DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E XBJ1_1611 dnaX; DNA polymerase III, tau and gamma subunits; DNA elongation factor III K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E XBJ1_3552 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] E XBJ1_2558 holE; DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D DNA ligase E XBJ1_0236 DNA ligase (modular protein) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E XBJ1_3119 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E XBJ1_4151 uvrD; DNA-dependent ATPase I and helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E XBJ1_3902 ssb; ssDNA-binding protein controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein E XBJ1_3380 ssb; ssDNA-binding protein controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein E XBJ1_1171 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E XBJ1_1545 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E XBJ1_0055 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E XBJ1_3699 recB; exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E XBJ1_3697 recC; exonuclease V, gamma chain with recB and recD: 5' and 3' nuclease, ATPase, recombinase, helicase K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E XBJ1_3700 recD; exonuclease V, alpha chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E XBJ1_3287 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA E XBJ1_2266 ruvA; Holliday junction helicase, subunit A K03550 ruvA; holliday junction DNA helicase RuvA E XBJ1_2267 ruvB; Holliday junction helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E XBJ1_2265 ruvC; Holliday junction nuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E XBJ1_1196 rusA; DLP12 prophage; endodeoxyribonuclease RUS (Holliday junction resolvase) K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E XBJ1_4280 priA; primosomal protein N' (factor Y) directs replication fork assembly at D-loops, ATP-dependent K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E XBJ1_0330 priB; primosomal replication protein N K02686 priB; primosomal replication protein N E XBJ1_1613 priC; primosomal replication protein N'' K04067 priC; primosomal replication protein N'' E XBJ1_2870 sbcB; exonuclease I, 3'--> 5'-specific; deoxyribophosphodiesterase K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E XBJ1_1690 sbcC; ATP-dependent dsDNA exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E XBJ1_1689 sbcD; ATP-dependent dsDNA exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E XBJ1_3287 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA E XBJ1_3528 radA; putative ATP-dependent protease, with nucleoside triP hydrolase and multiheme cytochrome domains, DNA repair protein K04485 radA; DNA repair protein RadA/Sms E XBJ1_0003 recF; gap repair protein with nucleoside triP hydrolase domain, part of RecFOR complex that targets RecA to ssDNA-dsDNA junction K03629 recF; DNA replication and repair protein RecF E XBJ1_0231 recG; DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E XBJ1_3423 recJ; ssDNA exonuclease, 5'--> 3'-specific, Mg-dependent K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E XBJ1_3146 recO; gap repair protein, part of RecFOR complex that targets RecA to ssDNA-dsDNA junction K03584 recO; DNA repair protein RecO (recombination protein O) E XBJ1_1609 recR; gap repair protein with type I DNA topoisomerase domain, part of RecFOR complex that targets RecA to ssDNA-dsDNA junction K06187 recR; recombination protein RecR E XBJ1_3161 recN; protein used in recombination and DNA repair with nucleoside triphosphate hydrolase domain K03631 recN; DNA repair protein RecN (Recombination protein N) E XBJ1_1703 rdgC; putative ribonuclease involved in removal of stalled replication fork with Rh-like domain K03554 rdgC; recombination associated protein RdgC E XBJ1_2266 ruvA; Holliday junction helicase, subunit A K03550 ruvA; holliday junction DNA helicase RuvA E XBJ1_2267 ruvB; Holliday junction helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E XBJ1_2265 ruvC; Holliday junction nuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E XBJ1_3755 conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1 E XBJ1_2897 yejH; putative ATP-dependent helicase with nucleoside triP hydrolase domain K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E XBJ1_1690 sbcC; ATP-dependent dsDNA exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E XBJ1_1689 sbcD; ATP-dependent dsDNA exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F XBJ1_0730 gyrA; DNA gyrase, subunit A, type II topoisomerase K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F XBJ1_0004 gyrB; DNA gyrase, subunit B (type II topoisomerase) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F XBJ1_2289 topA; DNA topoisomerase type I, omega protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F XBJ1_4021 hupA; DNA-binding protein HU-alpha (HU-2), plays a role in DNA replication and in rpo translation K05787 hupA; DNA-binding protein HU-alpha F XBJ1_1634 hupB; DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F XBJ1_3423 recJ; ssDNA exonuclease, 5'--> 3'-specific, Mg-dependent K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F XBJ1_3146 recO; gap repair protein, part of RecFOR complex that targets RecA to ssDNA-dsDNA junction K03584 recO; DNA repair protein RecO (recombination protein O) F XBJ1_1609 recR; gap repair protein with type I DNA topoisomerase domain, part of RecFOR complex that targets RecA to ssDNA-dsDNA junction K06187 recR; recombination protein RecR F XBJ1_0236 DNA ligase (modular protein) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] F XBJ1_3119 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F XBJ1_3790 fis; DNA-binding protein for site-specific recombination and inversion, transcription of rRNA and tRNA operons, and DNA replication K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F XBJ1_2539 ihfA; integration host factor (IHF), alpha subunit, DNA-bending protein, DNA replication K04764 ihfA; integration host factor subunit alpha F XBJ1_0813 ihfB; integration host factor (IHF), beta subunit, site-specific recombination K05788 ihfB; integration host factor subunit beta E Supressor F XBJ1_2870 sbcB; exonuclease I, 3'--> 5'-specific; deoxyribophosphodiesterase K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F XBJ1_4144 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F XBJ1_3903 uvrA; DNA excision repair enzyme subunit, with UvrBC K03701 uvrA; excinuclease ABC subunit A F XBJ1_0981 uvrB; ATP-dependent DNA excision repair enzyme UvrAC K03702 uvrB; excinuclease ABC subunit B F XBJ1_2432 hns; transcriptional regulator, DNA-binding protein HLP-II (HU, BH2, HD, NS), increases DNA thermal stability K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D XBJ1_3302 dinB; DNA polymerase IV, devoid of proofreading, damage-inducible protein P K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D XBJ1_3287 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA D XBJ1_3997 lexA; transcriptional repressor for SOS response (signal peptidase of LexA family) K01356 lexA; repressor LexA [EC:3.4.21.88] D XBJ1_3161 recN; protein used in recombination and DNA repair with nucleoside triphosphate hydrolase domain K03631 recN; DNA repair protein RecN (Recombination protein N) D XBJ1_1795 polB; DNA polymerase II and 3'-> 5' exonuclease K02336 polB; DNA polymerase II [EC:2.7.7.7] D XBJ1_3902 ssb; ssDNA-binding protein controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein D XBJ1_3380 ssb; ssDNA-binding protein controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein D XBJ1_1171 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D XBJ1_1545 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D XBJ1_4382 dinD; DNA-damage-inducible protein, part of SOS response K14623 dinD; DNA-damage-inducible protein D D XBJ1_1391 DinI-like protein in retron EC67 K12149 dinI; DNA-damage-inducible protein I B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D XBJ1_4186 rep; Rep helicase, a single-stranded DNA-dependent ATPase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D XBJ1_0766 helD; DNA helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4] D XBJ1_0964 dinG; LexA-regulated (SOS) repair enzyme K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D XBJ1_2237 yoaA; putative ATP-dependent helicase with nucleotide triphosphate hydrolase domain, SOS repair K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D XBJ1_3465 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D XBJ1_2886 Nudix hydrolase 1 (AtNUDT1) (NADH pyrophosphatase) (DHNTP pyrophosphohydrolase) (Dihydroneopterin triphosphate pyrophosphohydrolase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D XBJ1_4363 dut; deoxyuridinetriphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D XBJ1_0728 nrdA; ribonucleoside diphosphate reductase 1, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D XBJ1_0727 nrdB; ribonucleoside-diphosphate reductase 1, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024