+F Repair protein KO #

  DNA Repair and Recombination Proteins - Xenorhabdus bovienii CS03

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D XBW1_3590 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E XBW1_1651 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E XBW1_3705 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E XBW1_2052 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D XBW1_3900 mutT; Mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D XBW1_2515 Nudix hydrolase 1 (modular protein) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D XBW1_4709 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D XBW1_3590 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D XBW1_2295 Transcriptional regulator, AraC family K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E XBW1_1651 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E XBW1_1753 putative DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E XBW1_3705 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E XBW1_0260 tag; DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E XBW1_4698 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E XBW1_2052 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E XBW1_2235 xthA; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E XBW1_2513 nfo; putative endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E XBW1_0437 nfi; Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E XBW1_3862 recJ; Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E XBW1_1819 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E XBW1_0265 ligB; DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E XBW1_0369 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E XBW1_4103 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E XBW1_3458 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B E XBW1_2885 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E XBW1_4504 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E XBW1_0369 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E XBW1_1819 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E XBW1_0265 ligB; DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F XBW1_0409 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F XBW1_0410 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F XBW1_4572 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F XBW1_0267 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F XBW1_2473 mfd; Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E XBW1_4036 mutS; DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E XBW1_4463 mutL; DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E XBW1_3928 mutH; DNA mismatch repair protein mutH K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E XBW1_2502 sbcB; Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E XBW1_2376 xseA; Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E XBW1_0960 xseB; Exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] E XBW1_0864 exoX; Putative DNA-directed DNA polymerase K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] D DNA polymerase III holoenzyme E XBW1_4157 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E XBW1_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E XBW1_4338 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E XBW1_3574 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E XBW1_2483 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E XBW1_1436 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E XBW1_1031 Putative DNA-directed DNA polymerase from phage K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E XBW1_0913 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E XBW1_1132 holD; DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] E XBW1_2356 holE; DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D DNA ligase E XBW1_1819 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E XBW1_0265 ligB; DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E XBW1_4504 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E XBW1_1382 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E XBW1_1212 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E XBW1_3743 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E XBW1_4102 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E XBW1_1301 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E XBW1_mp0147 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E XBW1_0057 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E XBW1_4207 recB; Exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E XBW1_4209 recC; Exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E XBW1_4206 recD; Exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E XBW1_3647 recA; Protein recA K03553 recA; recombination protein RecA E XBW1_1943 ruvA; Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E XBW1_1944 ruvB; Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E XBW1_1942 ruvC; Crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E XBW1_4632 priA; Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E XBW1_4450 priB; Primosomal replication protein n K02686 priB; primosomal replication protein N E XBW1_0915 priC; Primosomal replication protein N'' K04067 priC; primosomal replication protein N'' E XBW1_2502 sbcB; Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E XBW1_0991 sbcC; Nuclease sbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E XBW1_0990 sbcD; Nuclease sbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E XBW1_3647 recA; Protein recA K03553 recA; recombination protein RecA E XBW1_1110 radA; DNA repair protein radA K04485 radA; DNA repair protein RadA/Sms E XBW1_0003 recF; DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF E XBW1_0270 recG; ATP-dependent DNA helicase recG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E XBW1_3862 recJ; Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E XBW1_1667 recO; DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O) E XBW1_0911 recR; Recombination protein recR K06187 recR; recombination protein RecR E XBW1_1648 recN; DNA repair protein recN K03631 recN; DNA repair protein RecN (Recombination protein N) E XBW1_mp0148 rdgC; Recombination-associated protein rdgC K03554 rdgC; recombination associated protein RdgC E XBW1_1003 rdgC; Recombination-associated protein rdgC K03554 rdgC; recombination associated protein RdgC E XBW1_1943 ruvA; Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E XBW1_1944 ruvB; Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E XBW1_1942 ruvC; Crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E XBW1_2526 conserved protein of unknown function K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E XBW1_0991 sbcC; Nuclease sbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E XBW1_0990 sbcD; Nuclease sbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F XBW1_2763 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F XBW1_0004 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F XBW1_2031 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F XBW1_0439 hupA; DNA-binding protein HU-alpha K05787 hupA; DNA-binding protein HU-alpha F XBW1_0938 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F XBW1_3862 recJ; Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F XBW1_1667 recO; DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O) F XBW1_0911 recR; Recombination protein recR K06187 recR; recombination protein RecR F XBW1_1819 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] F XBW1_0265 ligB; DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F XBW1_0526 fis; DNA-binding protein fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F XBW1_3015 ihfA; Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F XBW1_3322 ihfB; Integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F XBW1_2502 sbcB; Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F XBW1_4495 recQ; ATP-dependent DNA helicase recQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F XBW1_4103 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F XBW1_3458 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B F XBW1_2225 hns; DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D XBW1_3658 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D XBW1_3647 recA; Protein recA K03553 recA; recombination protein RecA D XBW1_4121 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D XBW1_1648 recN; DNA repair protein recN K03631 recN; DNA repair protein RecN (Recombination protein N) D XBW1_0693 polB; DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D XBW1_1382 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D XBW1_1212 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D XBW1_3743 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D XBW1_4102 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D XBW1_1301 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D XBW1_1589 DinI-like protein in retron EC67 K12149 dinI; DNA-damage-inducible protein I B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D XBW1_4542 rep; ATP-dependent DNA helicase rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D XBW1_3255 helD; Helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4] D XBW1_1958 yoaA; putative ATP-dependent helicase yoaA K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D XBW1_3441 dinG; putative ATP-dependent helicase dinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D XBW1_3900 mutT; Mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D XBW1_2515 Nudix hydrolase 1 (modular protein) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D XBW1_4709 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D XBW1_2761 nrdA; Ribonucleoside-diphosphate reductase 1 subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D XBW1_2759 nrdB; Ribonucleoside-diphosphate reductase 1 subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024