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Transfer RNA Biogenesis - Xanthomonas campestris pv. campestris B100
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
D xcc-b100_1899 Ribonuclease K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24]
C CCA adding factors
D xcc-b100_0790 cca; multifunctional CCA protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
D xcc-b100_4072 Conserved hypothetical protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D xcc-b100_1475 Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D xcc-b100_3716 unnamed protein product K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D xcc-b100_3183 unnamed protein product K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D xcc-b100_1541 unnamed protein product K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D xcc-b100_2958 unnamed protein product K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D xcc-b100_3531 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D xcc-b100_4045 unnamed protein product K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D xcc-b100_2141 lysyl-tRNA synthetase heat inducible K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D xcc-b100_1166 unnamed protein product K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D xcc-b100_2535 unnamed protein product K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D xcc-b100_2699 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D xcc-b100_1704 unnamed protein product K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D xcc-b100_2666 unnamed protein product K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D xcc-b100_1928 unnamed protein product K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D xcc-b100_3709 unnamed protein product K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D xcc-b100_2093 unnamed protein product K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D xcc-b100_1708 phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D xcc-b100_1709 phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D xcc-b100_4025 unnamed protein product K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D xcc-b100_4109 unnamed protein product K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
D xcc-b100_3918 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
C AARS associated factors
D xcc-b100_3356 Histidine triad-like protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
C Methyltransferases
D xcc-b100_1027 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
C Psudouridine synthases
D xcc-b100_1616 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D xcc-b100_1651 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D xcc-b100_2555 tRNA pseudouridine synthase D, probable K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
C Thiolation factors
C KEOPS/EKC complex
C Elongator complex
C Elongator related proteins
C Other tRNA modification factors
D xcc-b100_3937 Sua5/YciO/YrdC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D xcc-b100_2544 tRNA isopentenyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D xcc-b100_4464 tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D xcc-b100_0403 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
D xcc-b100_1271 sulfite synthesis pathway protein K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
C Other tRNA degradation factors
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AProkaryotic type
B 5'processing factors
C Ribonucrease P
D xcc-b100_4467 ribonuclease P, protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D xcc-b100_rna061 RNAseP K01978 rnpB; M1 RNA
B 3'processing and CCA adding factors
C 3'processing factors
D xcc-b100_2740 Ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D xcc-b100_0933 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D xcc-b100_1872 unnamed protein product K03684 rnd; ribonuclease D [EC:3.1.13.5]
D xcc-b100_1899 Ribonuclease K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24]
C CCA adding factors
D xcc-b100_0790 cca; multifunctional CCA protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
D xcc-b100_4072 Conserved hypothetical protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
C Other tRNA splicing factors
D xcc-b100_2978 conserved hypothetical protein K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
B tRNA transport factors
C tRNA export factors
D xcc-b100_3669 Putative ABC transporter ATP-binding protein (duplicated ATPase domains) K06020 ettA; energy-dependent translational throttle protein EttA
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D xcc-b100_1541 unnamed protein product K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D xcc-b100_3716 unnamed protein product K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D xcc-b100_4025 unnamed protein product K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D xcc-b100_4109 unnamed protein product K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D xcc-b100_1704 unnamed protein product K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D xcc-b100_3183 unnamed protein product K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D xcc-b100_2141 lysyl-tRNA synthetase heat inducible K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D xcc-b100_2535 unnamed protein product K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D xcc-b100_3709 unnamed protein product K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D xcc-b100_2958 unnamed protein product K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D xcc-b100_2666 unnamed protein product K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D xcc-b100_1166 unnamed protein product K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D xcc-b100_4290 glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D xcc-b100_4289 Glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D xcc-b100_1928 unnamed protein product K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D xcc-b100_1475 Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D xcc-b100_3531 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D xcc-b100_4045 unnamed protein product K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D xcc-b100_1708 phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D xcc-b100_1709 phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D xcc-b100_2093 unnamed protein product K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D xcc-b100_2699 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D xcc-b100_1885 glutamyl-tRNA synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
C Trans-editing factors
D xcc-b100_3918 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D xcc-b100_3495 conserved hypothetical protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
B tRNA modification factors
C Deaminases
D xcc-b100_2012 Putative cytidine / deoxycytidylate deaminase family protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
C Dihydorouridine synthases
D xcc-b100_4132 Putative dihydrouridine synthase K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D xcc-b100_3590 Putative TIM-barrel protein; NifR3 family K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
C Methylthiotransferases
D xcc-b100_1844 unnamed protein product K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
C Methyltransferases
D xcc-b100_1027 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D xcc-b100_3138 tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D xcc-b100_4464 tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D xcc-b100_1012 rlmB; 23S rRNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D xcc-b100_1902 tRNA/rRNA methyltransferase K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D xcc-b100_0230 RNA methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
C Psudouridine synthases
D xcc-b100_1616 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D xcc-b100_1651 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D xcc-b100_0247 pseudouridylate synthase K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
D xcc-b100_2555 tRNA pseudouridine synthase D, probable K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D xcc-b100_4405 Putative pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
C Thiolation factors
D xcc-b100_2263 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase methyltransferase. K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D xcc-b100_4304 putative PP-loop family ATPase K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D xcc-b100_2698 iscA; Putative iron-sulfur cluster assembly accessory protein K13628 iscA; iron-sulfur cluster assembly protein
D xcc-b100_2044 ygfZ; tRNA-modifying protein K06980 ygfZ; tRNA-modifying protein YgfZ
C KEOPS/EKC complex
C Other tRNA modification factors
D xcc-b100_0403 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D xcc-b100_2544 tRNA isopentenyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D xcc-b100_1793 S-adenosylmethionine:tRNAribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D xcc-b100_1183 Putative transcriptional regulator, ExsB family K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D xcc-b100_3761 6-pyruvoyl tetrahydrobiopterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D xcc-b100_1182 Putative radical activating enzyme K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D xcc-b100_3968 Conserved hypothetical protein K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D xcc-b100_1876 Putative iron-sulfur cluster-binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D xcc-b100_1794 queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D xcc-b100_1564 Putative cell cycle protein mesJ homolog. K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D xcc-b100_1225 Glycoprotease family protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D xcc-b100_3937 Sua5/YciO/YrdC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D xcc-b100_4001 O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D xcc-b100_1878 Conserved hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D xcc-b100_2873 NAD/FAD-binding protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
B tRNA degradation factors
C xcc-b100_2747 RNase R K12573 rnr; ribonuclease R [EC:3.1.13.1]
C xcc-b100_1653 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024